******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MOT1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:350621-351059 1.0000 100 chrVIII:450922-453098 1.0000 100 chrXV:135780-136847 1.0000 100 chrVII:319224-320134 1.0000 100 chrXI:457972-459358 1.0000 100 chrI:190248-192052 1.0000 100 chrIV:1488550-1490808 1.0000 100 chrXVI:821567-822427 1.0000 100 chrXIII:808074-808525 1.0000 100 chrVII:592122-593030 1.0000 100 chrVII:483364-483750 1.0000 100 chrXI:617690-619262 1.0000 100 chrIV:768268-769283 1.0000 100 chrIII:168063-168518 1.0000 100 chrXVI:455180-455375 1.0000 100 chrIV:1201549-1202107 1.0000 100 chrXII:201668-202942 1.0000 100 chrIX:393267-393766 1.0000 100 chrXIV:585388-586556 1.0000 100 chrIV:1079115-1080932 1.0000 100 chrXII:628232-628635 1.0000 100 chrIX:389619-390929 1.0000 100 chrII:326502-327172 1.0000 100 chrXII:95548-95862 1.0000 100 chrXVI:296904-298358 1.0000 100 chrVII:531395-531767 1.0000 100 chrXV:854032-854793 1.0000 100 chrXII:348006-348822 1.0000 100 chrVII:970218-970505 1.0000 100 chrXV:903569-905733 1.0000 100 chrXIII:225371-226668 1.0000 100 chrV:288178-288735 1.0000 100 chrXVI:622297-622885 1.0000 100 chrII:612242-614749 1.0000 100 chrIV:866283-867888 1.0000 100 chrXV:796674-798841 1.0000 100 chrIV:1016956-1017465 1.0000 100 chrXIV:24086-27147 1.0000 100 chrVII:271019-272192 1.0000 100 chrXII:873985-876872 1.0000 100 chrVIII:475497-475892 1.0000 100 chrX:745095-745195 1.0000 100 chrVII:427244-427743 1.0000 100 chrX:122175-122275 1.0000 100 chrXII:1003137-1004010 1.0000 100 chrXIII:372205-372748 1.0000 100 chrXIV:330843-332516 1.0000 100 chrXIV:783718-784315 1.0000 100 chrVII:541729-542146 1.0000 100 chrXVI:775203-776088 1.0000 100 chrXIII:170000-171291 1.0000 100 chrIX:197422-197958 1.0000 100 chrXV:710083-710542 1.0000 100 chrXIII:352097-353499 1.0000 100 chrVIII:34421-36213 1.0000 100 chrXII:234567-235215 1.0000 100 chrX:542596-542696 1.0000 100 chrVII:226787-228511 1.0000 100 chrXVI:408107-408274 1.0000 100 chrVII:95228-97249 1.0000 100 chrXI:615822-617488 1.0000 100 chrXII:975792-976094 1.0000 100 chrXII:328360-330166 1.0000 100 chrXI:282588-284477 1.0000 100 chrV:362457-363300 1.0000 100 chrIV:1183171-1184155 1.0000 100 chrVII:370681-371571 1.0000 100 chrXIII:510586-512048 1.0000 100 chrXIV:253177-254229 1.0000 100 chrIII:107097-108754 1.0000 100 chrXII:728977-730326 1.0000 100 chrVIII:134049-134718 1.0000 100 chrXI:339755-340993 1.0000 100 chrIII:149763-150171 1.0000 100 chrXIII:124081-124495 1.0000 100 chrII:87629-88586 1.0000 100 chrV:435383-435923 1.0000 100 chrXII:656850-657193 1.0000 100 chrIV:1277690-1279055 1.0000 100 chrXII:439651-442194 1.0000 100 chrVII:401368-401617 1.0000 100 chrXVI:572037-572588 1.0000 100 chrVI:226294-227325 1.0000 100 chrXIV:725899-726344 1.0000 100 chrVII:938912-940034 1.0000 100 chrXII:636620-639939 1.0000 100 chrII:88927-90502 1.0000 100 chrXII:1028255-1029766 1.0000 100 chrXV:1027714-1029448 1.0000 100 chrVIII:296953-297223 1.0000 100 chrVII:287128-287661 1.0000 100 chrXI:302712-303225 1.0000 100 chrXVI:172516-174092 1.0000 100 chrIV:359361-359778 1.0000 100 chrXV:282016-282951 1.0000 100 chrVII:845251-846098 1.0000 100 chrXVI:402685-407827 1.0000 100 chrXII:734602-734978 1.0000 100 chrXVI:810584-810870 1.0000 100 chrX:138947-139047 1.0000 100 chrVI:180657-181261 1.0000 100 chrXII:339808-341757 1.0000 100 chrXVI:642350-643306 1.0000 100 chrXIII:161640-164368 1.0000 100 chrXII:604421-605632 1.0000 100 chrXVI:769018-769494 1.0000 100 chrIV:464252-470444 1.0000 100 chrXVI:899976-900479 1.0000 100 chrIV:83356-83969 1.0000 100 chrXV:228154-228557 1.0000 100 chrXIII:253129-253908 1.0000 100 chrIX:256022-256606 1.0000 100 chrVI:183093-184227 1.0000 100 chrVII:255145-255688 1.0000 100 chrV:176920-177469 1.0000 100 chrXVI:927944-928379 1.0000 100 chrXV:670930-671625 1.0000 100 chrXIII:90981-92158 1.0000 100 chrIX:254170-254668 1.0000 100 chrXV:514208-514722 1.0000 100 chrVII:856522-857964 1.0000 100 chrXIII:810412-810818 1.0000 100 chrII:604167-607126 1.0000 100 chrIV:769541-770042 1.0000 100 chrV:486992-487625 1.0000 100 chrVII:649589-650902 1.0000 100 chrXVI:121754-124496 1.0000 100 chrXIV:61976-64751 1.0000 100 chrXV:967979-968838 1.0000 100 chrXI:46721-47003 1.0000 100 chrVII:786752-788714 1.0000 100 chrX:617695-617795 1.0000 100 chrXII:791396-791737 1.0000 100 chrXII:506084-507566 1.0000 100 chrIII:90797-91171 1.0000 100 chrXIII:861166-861735 1.0000 100 chrXIV:568058-568480 1.0000 100 chrIV:1461344-1461842 1.0000 100 chrVII:706892-707191 1.0000 100 chrXII:197799-199764 1.0000 100 chrII:59527-61140 1.0000 100 chrV:396252-398079 1.0000 100 chrIV:170481-170940 1.0000 100 chrXV:833241-833451 1.0000 100 chrX:621971-622071 1.0000 100 chrXIII:837750-838207 1.0000 100 chrVII:640649-642206 1.0000 100 chrXI:74439-74807 1.0000 100 chrXI:326414-327878 1.0000 100 chrVIII:173582-176627 1.0000 100 chrXIV:229535-230978 1.0000 100 chrVIII:125906-127784 1.0000 100 chrXIII:671911-674718 1.0000 100 chrXIII:168683-169007 1.0000 100 chrX:58859-58959 1.0000 100 chrI:166178-166885 1.0000 100 chrVII:738906-739702 1.0000 100 chrX:374178-374278 1.0000 100 chrXVI:481455-482025 1.0000 100 chrXII:712233-712709 1.0000 100 chrVIII:237751-238075 1.0000 100 chrXIII:420315-420774 1.0000 100 chrIV:340568-341656 1.0000 100 chrVII:438222-440107 1.0000 100 chrIV:802523-802835 1.0000 100 chrXII:645311-646159 1.0000 100 chrXIII:145987-147223 1.0000 100 chrVIII:410811-411721 1.0000 100 chrIV:1268540-1269664 1.0000 100 chrXV:232074-232865 1.0000 100 chrX:424237-424337 1.0000 100 chrIV:520736-521176 1.0000 100 chrXII:86932-87173 1.0000 100 chrXIV:301587-303843 1.0000 100 chrVIII:381353-383378 1.0000 100 chrXIV:660277-660909 1.0000 100 chrIV:306224-309560 1.0000 100 chrXIV:569516-570053 1.0000 100 chrX:569285-569385 1.0000 100 chrIX:315556-318642 1.0000 100 chrXII:1051970-1052202 1.0000 100 chrXVI:828923-829570 1.0000 100 chrVI:106503-107032 1.0000 100 chrI:71159-73606 1.0000 100 chrXVI:819350-820255 1.0000 100 chrXV:831175-832857 1.0000 100 chrXI:312576-314001 1.0000 100 chrII:234908-237461 1.0000 100 chrV:116089-118299 1.0000 100 chrIV:1300474-1302535 1.0000 100 chrIV:117198-118194 1.0000 100 chrVIII:74851-75909 1.0000 100 chrXII:962842-963254 1.0000 100 chrXII:282730-284109 1.0000 100 chrXVI:279945-282963 1.0000 100 chrIX:256824-258692 1.0000 100 chrXV:159140-161835 1.0000 100 chrXI:67805-70301 1.0000 100 chrIV:1175600-1176046 1.0000 100 chrIII:150950-151560 1.0000 100 chrXV:216323-216835 1.0000 100 chrXIV:104579-105652 1.0000 100 chrXIII:258859-259417 1.0000 100 chrXIV:628176-628719 1.0000 100 chrVII:700406-701149 1.0000 100 chrXII:280691-282491 1.0000 100 chrIV:913993-917137 1.0000 100 chrX:523827-523927 1.0000 100 chrVII:609269-611467 1.0000 100 chrV:77619-79458 1.0000 100 chrXVI:577736-579556 1.0000 100 chrIV:433593-434983 1.0000 100 chrXVI:502440-503262 1.0000 100 chrII:227000-227462 1.0000 100 chrXV:409053-409939 1.0000 100 chrXIII:67275-68103 1.0000 100 chrVI:53250-55932 1.0000 100 chrXVI:447331-448446 1.0000 100 chrXII:262953-263950 1.0000 100 chrXV:407544-408396 1.0000 100 chrIX:83768-85170 1.0000 100 chrIV:489777-490831 1.0000 100 chrXVI:643845-646195 1.0000 100 chrIV:491014-492557 1.0000 100 chrX:521495-521595 1.0000 100 chrXIV:95974-96462 1.0000 100 chrVII:122029-123312 1.0000 100 chrXII:890742-890995 1.0000 100 chrVII:397985-400131 1.0000 100 chrXIII:159145-159720 1.0000 100 chrVII:598498-601192 1.0000 100 chrXV:980153-981071 1.0000 100 chrV:438471-439002 1.0000 100 chrXV:882793-884258 1.0000 100 chrXII:459603-460690 1.0000 100 chrVII:115266-115756 1.0000 100 chrIII:201-1180 1.0000 100 chrVII:544414-545826 1.0000 100 chrXIII:650814-653614 1.0000 100 chrXIV:288425-289064 1.0000 100 chrII:266215-266718 1.0000 100 chrXII:231690-234384 1.0000 100 chrV:85017-87153 1.0000 100 chrVII:328428-329216 1.0000 100 chrIV:1095134-1095644 1.0000 100 chrIV:321737-323627 1.0000 100 chrXVI:744088-744606 1.0000 100 chrVIII:388653-389199 1.0000 100 chrXV:663502-664864 1.0000 100 chrIX:97252-97650 1.0000 100 chrXI:490778-491453 1.0000 100 chrXII:214629-215059 1.0000 100 chrIV:884297-884678 1.0000 100 chrV:130870-131436 1.0000 100 chrXII:1018102-1019529 1.0000 100 chrX:136039-136139 1.0000 100 chrXVI:718360-720115 1.0000 100 chrXVI:435631-436188 1.0000 100 chrIV:1466578-1468454 1.0000 100 chrXIII:195953-196291 1.0000 100 chrXV:622087-623298 1.0000 100 chrV:235347-235542 1.0000 100 chrV:443082-443333 1.0000 100 chrXVI:210019-210447 1.0000 100 chrXIII:222977-224128 1.0000 100 chrVII:805219-808258 1.0000 100 chrIV:619694-620222 1.0000 100 chrIV:1162923-1164932 1.0000 100 chrXIV:602065-602592 1.0000 100 chrXVI:653999-655042 1.0000 100 chrIV:43925-44560 1.0000 100 chrXII:951028-954793 1.0000 100 chrXIII:498729-501257 1.0000 100 chrII:644864-645440 1.0000 100 chrV:311351-312280 1.0000 100 chrVII:661566-662019 1.0000 100 chrVII:774133-774731 1.0000 100 chrIX:174909-175221 1.0000 100 chrXIII:539756-540799 1.0000 100 chrXII:196889-197533 1.0000 100 chrXIV:413517-414941 1.0000 100 chrXV:113522-113877 1.0000 100 chrIV:555407-557392 1.0000 100 chrVIII:358300-358761 1.0000 100 chrXII:793737-796830 1.0000 100 chrI:130631-132256 1.0000 100 chrX:360180-360280 1.0000 100 chrXI:381630-382428 1.0000 100 chrVII:797989-800392 1.0000 100 chrIV:229628-231834 1.0000 100 chrVIII:372717-373935 1.0000 100 chrIV:221055-222330 1.0000 100 chrXI:257783-260009 1.0000 100 chrII:642824-643073 1.0000 100 chrIX:177528-178558 1.0000 100 chrIV:1075122-1075762 1.0000 100 chrII:602668-603456 1.0000 100 chrV:235773-237219 1.0000 100 chrVII:479010-483124 1.0000 100 chrXV:226535-226863 1.0000 100 chrXVI:131766-132250 1.0000 100 chrVII:364859-367014 1.0000 100 chrIV:667709-668542 1.0000 100 chrII:197264-197828 1.0000 100 chrXII:809737-815731 1.0000 100 chrV:249800-250773 1.0000 100 chrIX:336012-336606 1.0000 100 chrXI:202535-203306 1.0000 100 chrXIII:625968-627107 1.0000 100 chrII:405683-406289 1.0000 100 chrXIII:407743-409377 1.0000 100 chrVIII:119708-121677 1.0000 100 chrXVI:309376-310342 1.0000 100 chrXIII:320957-321445 1.0000 100 chrXIV:715500-716628 1.0000 100 chrXIV:102586-102998 1.0000 100 chrIV:945792-946664 1.0000 100 chrVII:345384-346689 1.0000 100 chrVII:254197-254777 1.0000 100 chrXIV:499189-500841 1.0000 100 chrXIII:362939-363981 1.0000 100 chrVII:1048804-1050745 1.0000 100 chrV:305854-307690 1.0000 100 chrXIV:217283-217817 1.0000 100 chrIV:541248-542115 1.0000 100 chrX:294611-294711 1.0000 100 chrI:141598-143717 1.0000 100 chrXV:1048950-1049921 1.0000 100 chrXV:315795-316355 1.0000 100 chrVII:823354-823769 1.0000 100 chrXV:87340-88366 1.0000 100 chrXIV:405191-406075 1.0000 100 chrII:165102-165487 1.0000 100 chrX:647685-647785 1.0000 100 chrIII:127486-127963 1.0000 100 chrIX:386369-386918 1.0000 100 chrXIII:886775-889579 1.0000 100 chrXV:976385-976866 1.0000 100 chrXII:521411-522123 1.0000 100 chrXIV:721985-723281 1.0000 100 chrXIII:747318-748121 1.0000 100 chrII:333291-334121 1.0000 100 chrXIII:873624-874195 1.0000 100 chrVII:23933-25431 1.0000 100 chrXII:713131-713680 1.0000 100 chrXV:504996-506711 1.0000 100 chrXVI:689411-689933 1.0000 100 chrXI:158133-159327 1.0000 100 chrIV:721044-722122 1.0000 100 chrIV:1359463-1360855 1.0000 100 chrXV:977346-979835 1.0000 100 chrVII:779378-779760 1.0000 100 chrVI:224313-226031 1.0000 100 chrX:293697-293797 1.0000 100 chrIX:68271-69550 1.0000 100 chrXIII:131502-132087 1.0000 100 chrXV:461839-462110 1.0000 100 chrXI:163245-165458 1.0000 100 chrXVI:731600-732284 1.0000 100 chrXV:288079-288501 1.0000 100 chrII:679625-682720 1.0000 100 chrX:73467-73567 1.0000 100 chrXV:438481-439052 1.0000 100 chrIV:757491-758399 1.0000 100 chrVII:730975-731438 1.0000 100 chrXIII:219232-221175 1.0000 100 chrIV:568715-569339 1.0000 100 chrXVI:338706-341432 1.0000 100 chrXV:79735-82016 1.0000 100 chrII:306941-307610 1.0000 100 chrXV:619112-621299 1.0000 100 chrIII:227757-228340 1.0000 100 chrVII:1004032-1004411 1.0000 100 chrX:196205-196305 1.0000 100 chrVII:310559-312665 1.0000 100 chrVII:648762-649334 1.0000 100 chrXI:463378-465064 1.0000 100 chrVII:920176-920794 1.0000 100 chrX:569680-569780 1.0000 100 chrVII:561437-561716 1.0000 100 chrII:167774-169768 1.0000 100 chrXII:47637-49612 1.0000 100 chrV:266139-268195 1.0000 100 chrXI:517381-521735 1.0000 100 chrV:66450-69682 1.0000 100 chrV:298692-301613 1.0000 100 chrVII:515779-518988 1.0000 100 chrX:154611-154711 1.0000 100 chrIII:123382-123818 1.0000 100 chrXI:141703-144016 1.0000 100 chrIII:220317-222328 1.0000 100 chrIX:96457-97029 1.0000 100 chrIV:1269835-1271054 1.0000 100 chrIV:1351992-1353065 1.0000 100 chrXI:99048-100244 1.0000 100 chrVII:736202-736839 1.0000 100 chrX:378155-378255 1.0000 100 chrVI:191181-191753 1.0000 100 chrIX:325544-326080 1.0000 100 chrXIII:287976-289671 1.0000 100 chrXIV:349939-350613 1.0000 100 chrXVI:639562-641751 1.0000 100 chrX:354184-354284 1.0000 100 chrIV:488455-489248 1.0000 100 chrV:60808-62125 1.0000 100 chrV:260448-261294 1.0000 100 chrV:460541-462862 1.0000 100 chrXIII:123002-123886 1.0000 100 chrXIV:721153-721779 1.0000 100 chrIV:416896-417324 1.0000 100 chrIV:519660-519952 1.0000 100 chrX:414645-414745 1.0000 100 chrXI:162428-162667 1.0000 100 chrV:51645-53936 1.0000 100 chrVIII:132802-133365 1.0000 100 chrXIV:280879-283451 1.0000 100 chrIV:1305404-1306074 1.0000 100 chrV:99872-100280 1.0000 100 chrVI:75145-76376 1.0000 100 chrXIV:546570-547632 1.0000 100 chrXV:881564-882599 1.0000 100 chrX:453666-453766 1.0000 100 chrXIII:554800-558596 1.0000 100 chrX:380564-380664 1.0000 100 chrVII:970768-973692 1.0000 100 chrIV:1239304-1239822 1.0000 100 chrVI:157900-158248 1.0000 100 chrVII:411889-412589 1.0000 100 chrIII:77911-78855 1.0000 100 chrXIII:296803-298939 1.0000 100 chrVII:794154-794515 1.0000 100 chrVII:848688-849600 1.0000 100 chrX:517631-517731 1.0000 100 chrIV:216560-218081 1.0000 100 chrXIV:108422-109244 1.0000 100 chrX:390834-390934 1.0000 100 chrXI:219609-220158 1.0000 100 chrXIV:374664-375111 1.0000 100 chrII:413225-415808 1.0000 100 chrXVI:860146-860739 1.0000 100 chrXIV:65342-66796 1.0000 100 chrXI:307932-308701 1.0000 100 chrXV:340035-340569 1.0000 100 chrVII:882427-884347 1.0000 100 chrX:540728-540828 1.0000 100 chrXVI:879273-880553 1.0000 100 chrIII:57383-59866 1.0000 100 chrIX:183167-183681 1.0000 100 chrXV:961108-964318 1.0000 100 chrXI:261147-261972 1.0000 100 chrVII:726436-728031 1.0000 100 chrXV:424080-424652 1.0000 100 chrV:135220-136111 1.0000 100 chrXII:1011671-1013750 1.0000 100 chrXI:558651-559840 1.0000 100 chrXV:487443-487814 1.0000 100 chrIII:214070-214707 1.0000 100 chrXIV:442864-444758 1.0000 100 chrXIV:632504-632909 1.0000 100 chrIII:50742-52280 1.0000 100 chrVIII:62377-62918 1.0000 100 chrVIII:121926-122689 1.0000 100 chrXII:781004-781884 1.0000 100 chrXII:374217-374646 1.0000 100 chrVII:56332-58848 1.0000 100 chrVIII:466980-467294 1.0000 100 chrXII:903142-904423 1.0000 100 chrX:422720-422820 1.0000 100 chrXIII:300849-303766 1.0000 100 chrXII:610440-612047 1.0000 100 chrVI:137237-137732 1.0000 100 chrIX:230909-232903 1.0000 100 chrVII:440569-440923 1.0000 100 chrVI:210298-211040 1.0000 100 chrXV:1035536-1036235 1.0000 100 chrXII:513367-517024 1.0000 100 chrV:321958-323269 1.0000 100 chrXII:930321-932610 1.0000 100 chrI:138928-139346 1.0000 100 chrVIII:76109-76326 1.0000 100 chrXVI:692824-695478 1.0000 100 chrXV:464304-464926 1.0000 100 chrIX:23480-25300 1.0000 100 chrV:469219-469748 1.0000 100 chrXV:92693-94628 1.0000 100 chrII:45032-46370 1.0000 100 chrXIV:631524-631989 1.0000 100 chrV:434399-435138 1.0000 100 chrX:607768-607868 1.0000 100 chrXVI:579756-581246 1.0000 100 chrXV:677312-679193 1.0000 100 chrXII:252999-255245 1.0000 100 chrXII:368068-371467 1.0000 100 chrIV:330808-332938 1.0000 100 chrXVI:241510-242923 1.0000 100 chrIV:600556-602355 1.0000 100 chrIII:137307-139010 1.0000 100 chrXV:571710-572327 1.0000 100 chrXI:379446-379912 1.0000 100 chrV:550925-551560 1.0000 100 chrXVI:677907-679427 1.0000 100 chrX:531518-531618 1.0000 100 chrXIV:216114-216988 1.0000 100 chrXV:638961-639373 1.0000 100 chrXII:92424-92855 1.0000 100 chrII:144961-145481 1.0000 100 chrVII:533770-535158 1.0000 100 chrXIV:87372-90279 1.0000 100 chrII:299486-300277 1.0000 100 chrVII:930686-931143 1.0000 100 chrXV:493413-494865 1.0000 100 chrVI:95406-95953 1.0000 100 chrXIV:575098-577564 1.0000 100 chrX:538524-538624 1.0000 100 chrII:81496-83346 1.0000 100 chrV:335464-336939 1.0000 100 chrV:354809-355464 1.0000 100 chrXIII:120663-121045 1.0000 100 chrXI:333906-335005 1.0000 100 chrXIII:290574-291144 1.0000 100 chrXIV:415174-416251 1.0000 100 chrXI:84016-84425 1.0000 100 chrVII:205339-205769 1.0000 100 chrIV:118424-118732 1.0000 100 chrIX:427464-427771 1.0000 100 chrXVI:55889-56340 1.0000 100 chrVII:148088-149450 1.0000 100 chrXIV:251979-252451 1.0000 100 chrXVI:74931-77267 1.0000 100 chrVII:405463-405818 1.0000 100 chrVII:277085-278726 1.0000 100 chrVII:876174-879083 1.0000 100 chrXIII:667247-668182 1.0000 100 chrXIII:732104-733601 1.0000 100 chrXIV:505890-506853 1.0000 100 chrXII:919529-923194 1.0000 100 chrV:441867-442692 1.0000 100 chrX:120238-120338 1.0000 100 chrX:702008-702108 1.0000 100 chrIX:248515-251072 1.0000 100 chrIX:127200-130119 1.0000 100 chrX:650844-650944 1.0000 100 chrIV:1150509-1151154 1.0000 100 chrXVI:302761-304349 1.0000 100 chrV:301800-302019 1.0000 100 chrXIV:560148-560787 1.0000 100 chrXI:107011-110124 1.0000 100 chrX:156108-156208 1.0000 100 chrX:525932-526032 1.0000 100 chrXI:140727-141491 1.0000 100 chrIII:176815-179332 1.0000 100 chrXIII:549988-553253 1.0000 100 chrVIII:470375-471233 1.0000 100 chrVII:546689-547916 1.0000 100 chrXII:426909-427469 1.0000 100 chrXVI:193278-194634 1.0000 100 chrVII:557775-557944 1.0000 100 chrXIII:768177-768431 1.0000 100 chrXVI:794617-796184 1.0000 100 chrIII:241344-241994 1.0000 100 chrIII:295352-295933 1.0000 100 chrIX:380015-382786 1.0000 100 chrXV:841516-842925 1.0000 100 chrXII:804919-806833 1.0000 100 chrVIII:115791-116293 1.0000 100 chrXIII:480399-480823 1.0000 100 chrXV:594312-594613 1.0000 100 chrV:138495-141539 1.0000 100 chrXV:109190-111196 1.0000 100 chrXIII:572221-573266 1.0000 100 chrVI:167261-167659 1.0000 100 chrVIII:503931-506170 1.0000 100 chrIII:215449-215889 1.0000 100 chrX:348780-348880 1.0000 100 chrII:373930-376420 1.0000 100 chrVII:110297-110773 1.0000 100 chrV:281976-284289 1.0000 100 chrIV:811973-812713 1.0000 100 chrXV:252846-254695 1.0000 100 chrVIII:189848-191603 1.0000 100 chrX:89588-89688 1.0000 100 chrX:227716-227816 1.0000 100 chrXIII:914916-915579 1.0000 100 chrXVI:559987-560462 1.0000 100 chrXII:783785-784742 1.0000 100 chrIV:1449788-1451109 1.0000 100 chrXII:1001998-1002888 1.0000 100 chrXV:168012-168467 1.0000 100 chrIX:255004-255852 1.0000 100 chrIV:992699-993311 1.0000 100 chrIV:309783-310429 1.0000 100 chrII:255082-258015 1.0000 100 chrIV:589808-591269 1.0000 100 chrVII:344253-345116 1.0000 100 chrXVI:649097-649584 1.0000 100 chrIII:162532-164272 1.0000 100 chrXII:108266-108999 1.0000 100 chrXII:445564-447523 1.0000 100 chrX:204518-204618 1.0000 100 chrIX:370252-370583 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MOT1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MOT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MOT1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.297 C 0.203 G 0.203 T 0.297 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MOT1/background): A 0.299 C 0.201 G 0.201 T 0.299 ******************************************************************************** ******************************************************************************** MOTIF BSGGRATYGAACCSVGGAYCTYCVG MEME-1 width = 25 sites = 73 llr = 1280 E-value = 8.1e-231 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSGGRATYGAACCSVGGAYCTYCVG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :12:55:::aa:1:4:27:1:123: pos.-specific C 341::1:6:::a6532::6724543 probability G 356a52::a:::143681:111127 matrix T 3:1::2a4::::21:2:2417422: bits 2.3 * * 2.1 * * * 1.9 * * ** * 1.6 * * **** Relative 1.4 * * **** Entropy 1.2 * ****** * * * (25.3 bits) 0.9 * ** ****** * ** * 0.7 **** ******** ****** * 0.5 ***** **************** * 0.2 ************************* 0.0 ------------------------- Multilevel GGGGAATCGAACCCAGGACCTCCCG consensus TCA GT T TGCT T CTAAC sequence C G TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATYGAACCSVGGAYCTYCVG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------- chrIII:123382-123818 + 36 5.19e-14 TGGGGCGAGC CGGGACTCGAACCCGGGACCTCCCG CACCCTAAGC chrIX:183167-183681 + 75 2.96e-11 GTGGTCTCTA GCGGGATCGAACCGCTGATCCCCGC G chrII:197264-197828 - 38 2.96e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGC GTTATTAGCA chrV:443082-443333 + 54 2.96e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGC GTTATTAGCA chrXII:1051970-1052202 + 44 2.96e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGC GTTATTAGCA chrXII:92424-92855 - 28 4.10e-11 AGGGGCGAGC TGGGAATTGAACCCAGGGCCTCTCG CATGCTTTGT chrXIII:195953-196291 + 5 4.10e-11 GAGC TGGGAATTGAACCCAGGGCCTCTCG CATGCTTTGT chrVIII:388653-389199 + 26 4.10e-11 TGGGGCGAGC TGGGAATTGAACCCAGGGCCTCTCG CATGCTTTGT chrVIII:475497-475892 + 71 2.42e-10 ATGTTCCAAC CGAGGATCGAACTCGGGACCTTTGC CGTGT chrVIII:134049-134718 - 26 2.78e-10 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGG ATCAAAACCG chrIII:168063-168518 + 70 2.78e-10 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGG ATCAAA chrXIII:290574-291144 - 30 3.18e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACG GTGAAAGCGT chrXIII:320957-321445 + 5 3.18e-10 GAGT CCGGAATCGAACCGGAGACCTCTCC CATGCTAAGG chrVII:774133-774731 - 6 3.18e-10 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCC CATGC chrXVI:210019-210447 + 18 3.18e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACG GTGAAAGCGT chrVII:541729-542146 - 1 3.18e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACG chrIV:1016956-1017465 + 56 3.18e-10 ACTCCGAAGC GGGGAGTCGAACCCCGGTCTCCACG GTGAGAACGT chrXVI:860146-860739 - 24 3.63e-10 CTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACG ATGGCAACGT chrIV:488455-489248 + 5 3.63e-10 CAAC CGAGGTTCGAACTCGGGATCTTCGC CGTGTAAAGG chrVI:180657-181261 + 74 3.63e-10 CTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACG AT chrVII:845251-846098 - 62 3.63e-10 TTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACG ATGGCAACGT chrXVI:572037-572588 - 44 3.63e-10 TTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACG ATGGCAACGT chrII:326502-327172 + 14 3.63e-10 TTGATCCAAC CGAGGTTCGAACTCGGGATCTTCGC CGTGTAAAGG chrXVI:559987-560462 + 33 6.08e-10 ATGCGAATTC TGTGGATCGAACACAGGACCTCCAG ATAACTTGAC chrVII:440569-440923 + 29 6.08e-10 ATGCGAATTC TGTGGATCGAACACAGGACCTCCAG ATAACTTGAC chrIX:325544-326080 - 25 6.08e-10 TTGCTTCCAA TCGGATTTGAACCGATGATCTCCAC ATTACTAGTG chrVIII:358300-358761 + 7 6.08e-10 GAATTC TGTGGATCGAACACAGGACCTCCAG ATAACTTGAC chrIX:174909-175221 - 55 6.08e-10 TTGCTTCCAA TCGGATTTGAACCGATGATCTCCAC ATTACTAGTG chrIV:1095134-1095644 + 40 6.08e-10 ATGCGAACTC TGTGGATCGAACACAGGACCTCCAG ATATCTTGAC chrII:266215-266718 - 1 6.08e-10 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCAC chrIV:433593-434983 + 35 6.08e-10 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCAC ATTACTAGTG chrX:58859-58959 + 39 6.08e-10 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCAC ATTACTAGTG chrXVI:622297-622885 + 8 6.08e-10 CGAATTC TGTGGATCGAACACAGGACCTCCAG ATAACTTGAC chrX:374178-374278 + 52 7.81e-10 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTG ATTAGAAGTC chrV:469219-469748 - 64 8.82e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrX:378155-378255 - 65 8.82e-10 TTGATTTCGC CCAGGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrVII:823354-823769 - 11 8.82e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrV:438471-439002 - 54 8.82e-10 TTGATTTCGC CCAGGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrXIII:372205-372748 + 28 8.82e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrXIII:480399-480823 + 69 9.96e-10 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATG ATTAAGA chrXVI:769018-769494 + 10 9.96e-10 CTCCTCATA GGGGGCTCGAACCCCTGACATTTCG GTATCCTTGC chrXII:873985-876872 - 60 9.96e-10 ACTCCTCATA GGGGGCTCGAACCCCTGACATTTCG GTATCCTTGC chrIV:1201549-1202107 - 11 9.96e-10 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATG ATTAAGAGTC chrXIII:808074-808525 + 6 2.51e-09 CCCAC CCGGATTCGAACTGGGGTTGTTCGG ATCAGAACCG chrIV:884297-884678 - 23 5.86e-09 GTGCTCGAGG TGGGGTTTGAACCCACGACGGTCGC GTTGCTTTTA chrVI:210298-211040 + 9 8.73e-09 CTCCCGGG GGCGAGTCGAACGCCCGATCTCAAG ATTTCGTAGT chrXV:288079-288501 - 7 8.73e-09 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAG ATTTCG chrXIII:168683-169007 - 55 8.73e-09 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAG ATTTCGTAGT chrXIII:837750-838207 - 55 8.73e-09 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAG ATTTCGTAGT chrVI:137237-137732 + 61 1.06e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCG ATTAACAGTC chrVII:730975-731438 - 21 1.06e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCG ATTAACAGTC chrXIV:102586-102998 - 14 1.06e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCG ATTAACAGTC chrXV:228154-228557 - 66 1.06e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCG ATTAACAGTC chrXVI:810584-810870 - 39 1.06e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCG ATTAACAGTC chrXI:302712-303225 - 72 2.64e-08 CGGA CAGGAATTGAACCTGCAACCCTTCG ATTGCAATCT chrVII:287128-287661 + 15 2.64e-08 ATGAAACGGA CAGGAATTGAACCTGCAACCCTTCG ATTGCAATCT chrXII:374217-374646 - 13 3.13e-08 TCTTCCCCGC CAGGACTTGAACCTGGAATCTTCTG GTTCGTAGCC chrXV:340035-340569 + 56 3.13e-08 TCTTCCCCGC CAGGACTTGAACCTGGAATCTTCTG GTTCGTAGCC chrIV:619694-620222 + 70 3.13e-08 TCTTCCCCGC CAGGACTTGAACCTGGAATCTTCTG GTTCGT chrX:204518-204618 - 8 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCAC GCGACAA chrXII:426909-427469 - 31 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCAC GCGACAAGCG chrXV:571710-572327 - 28 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCAC GCGACAAGCG chrIV:568715-569339 - 25 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCAC GCGACAAGCG chrII:405683-406289 - 62 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCAC GCGACAAGCG chrVII:661566-662019 - 45 7.60e-08 ATGCCACCTG TCAGAATTGAACTAACGACCTTTGC ATTACAAGTG chrXVI:744088-744606 - 25 7.60e-08 TTGCCACCTG TCAGAATTGAACTAACGACCTTTGC ATTACAAGTG chrX:517631-517731 + 32 2.07e-07 TTAGCGCCGC TCGGTTTCGATCCGAGGACATCAGG GTTATGAGCC chrIII:149763-150171 - 41 2.07e-07 ATAGCGCCGC TCGGTTTCGATCCGAGGACATCAGG GTTATGAGCC chrXVI:435631-436188 + 43 2.22e-07 AAGCTCGCAC TCAGGATCGAACTAAGGACCAACAG ATTTGCAATC chrXII:280691-282491 + 25 5.31e-07 CAATGGTATC GCCGGATTGAAGCGATAATCCTTAG CGTCCTGAAC chrIV:519660-519952 + 46 6.32e-07 GGTTGTCCGC GCGAGTTCGAACCTCGCATCCTTCA ATAACTTATT chrX:424237-424337 - 13 6.32e-07 GGTTGTCCGC GCGAGTTCGAACCTCGCATCCTTCA GTATTTTTTG chrXIV:725899-726344 - 63 6.32e-07 GGTTGTCCGC GCGAGTTCGAACCTCGCATCCTTCA GTATTTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATYGAACCSVGGAYCTYCVG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123382-123818 5.2e-14 35_[+1]_40 chrIX:183167-183681 3e-11 74_[+1]_1 chrII:197264-197828 3e-11 37_[-1]_38 chrV:443082-443333 3e-11 53_[+1]_22 chrXII:1051970-1052202 3e-11 43_[+1]_32 chrXII:92424-92855 4.1e-11 27_[-1]_48 chrXIII:195953-196291 4.1e-11 4_[+1]_71 chrVIII:388653-389199 4.1e-11 25_[+1]_50 chrVIII:475497-475892 2.4e-10 70_[+1]_5 chrVIII:134049-134718 2.8e-10 25_[-1]_50 chrIII:168063-168518 2.8e-10 69_[+1]_6 chrXIII:290574-291144 3.2e-10 29_[-1]_46 chrXIII:320957-321445 3.2e-10 4_[+1]_71 chrVII:774133-774731 3.2e-10 5_[-1]_70 chrXVI:210019-210447 3.2e-10 17_[+1]_58 chrVII:541729-542146 3.2e-10 [-1]_75 chrIV:1016956-1017465 3.2e-10 55_[+1]_20 chrXVI:860146-860739 3.6e-10 23_[-1]_52 chrIV:488455-489248 3.6e-10 4_[+1]_71 chrVI:180657-181261 3.6e-10 73_[+1]_2 chrVII:845251-846098 3.6e-10 61_[-1]_14 chrXVI:572037-572588 3.6e-10 43_[-1]_32 chrII:326502-327172 3.6e-10 13_[+1]_62 chrXVI:559987-560462 6.1e-10 32_[+1]_43 chrVII:440569-440923 6.1e-10 28_[+1]_47 chrIX:325544-326080 6.1e-10 24_[-1]_51 chrVIII:358300-358761 6.1e-10 6_[+1]_69 chrIX:174909-175221 6.1e-10 54_[-1]_21 chrIV:1095134-1095644 6.1e-10 39_[+1]_36 chrII:266215-266718 6.1e-10 [-1]_75 chrIV:433593-434983 6.1e-10 34_[+1]_41 chrX:58859-58959 6.1e-10 38_[+1]_37 chrXVI:622297-622885 6.1e-10 7_[+1]_68 chrX:374178-374278 7.8e-10 51_[+1]_24 chrV:469219-469748 8.8e-10 63_[-1]_12 chrX:378155-378255 8.8e-10 64_[-1]_11 chrVII:823354-823769 8.8e-10 10_[-1]_65 chrV:438471-439002 8.8e-10 53_[-1]_22 chrXIII:372205-372748 8.8e-10 27_[+1]_48 chrXIII:480399-480823 1e-09 68_[+1]_7 chrXVI:769018-769494 1e-09 9_[+1]_66 chrXII:873985-876872 1e-09 59_[-1]_16 chrIV:1201549-1202107 1e-09 10_[-1]_65 chrXIII:808074-808525 2.5e-09 5_[+1]_70 chrIV:884297-884678 5.9e-09 22_[-1]_53 chrVI:210298-211040 8.7e-09 8_[+1]_67 chrXV:288079-288501 8.7e-09 6_[-1]_69 chrXIII:168683-169007 8.7e-09 54_[-1]_21 chrXIII:837750-838207 8.7e-09 54_[-1]_21 chrVI:137237-137732 1.1e-08 60_[+1]_15 chrVII:730975-731438 1.1e-08 20_[-1]_55 chrXIV:102586-102998 1.1e-08 13_[-1]_62 chrXV:228154-228557 1.1e-08 65_[-1]_10 chrXVI:810584-810870 1.1e-08 38_[-1]_37 chrXI:302712-303225 2.6e-08 71_[-1]_4 chrVII:287128-287661 2.6e-08 14_[+1]_61 chrXII:374217-374646 3.1e-08 12_[-1]_63 chrXV:340035-340569 3.1e-08 55_[+1]_20 chrIV:619694-620222 3.1e-08 69_[+1]_6 chrX:204518-204618 5.6e-08 7_[-1]_68 chrXII:426909-427469 5.6e-08 30_[-1]_45 chrXV:571710-572327 5.6e-08 27_[-1]_48 chrIV:568715-569339 5.6e-08 24_[-1]_51 chrII:405683-406289 5.6e-08 61_[-1]_14 chrVII:661566-662019 7.6e-08 44_[-1]_31 chrXVI:744088-744606 7.6e-08 24_[-1]_51 chrX:517631-517731 2.1e-07 31_[+1]_44 chrIII:149763-150171 2.1e-07 40_[-1]_35 chrXVI:435631-436188 2.2e-07 42_[+1]_33 chrXII:280691-282491 5.3e-07 24_[+1]_51 chrIV:519660-519952 6.3e-07 45_[+1]_30 chrX:424237-424337 6.3e-07 12_[-1]_63 chrXIV:725899-726344 6.3e-07 62_[-1]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATYGAACCSVGGAYCTYCVG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSGGRATYGAACCSVGGAYCTYCVG width=25 seqs=73 chrIII:123382-123818 ( 36) CGGGACTCGAACCCGGGACCTCCCG 1 chrIX:183167-183681 ( 75) GCGGGATCGAACCGCTGATCCCCGC 1 chrII:197264-197828 ( 38) GCGGGATCGAACCGCTGATCCCCGC 1 chrV:443082-443333 ( 54) GCGGGATCGAACCGCTGATCCCCGC 1 chrXII:1051970-1052202 ( 44) GCGGGATCGAACCGCTGATCCCCGC 1 chrXII:92424-92855 ( 28) TGGGAATTGAACCCAGGGCCTCTCG 1 chrXIII:195953-196291 ( 5) TGGGAATTGAACCCAGGGCCTCTCG 1 chrVIII:388653-389199 ( 26) TGGGAATTGAACCCAGGGCCTCTCG 1 chrVIII:475497-475892 ( 71) CGAGGATCGAACTCGGGACCTTTGC 1 chrVIII:134049-134718 ( 26) CCGGATTCGAACCGGGGTTGTCCGG 1 chrIII:168063-168518 ( 70) CCGGATTCGAACCGGGGTTGTCCGG 1 chrXIII:290574-291144 ( 30) GGGGAGTCGAACCCCGGTCTCCACG 1 chrXIII:320957-321445 ( 5) CCGGAATCGAACCGGAGACCTCTCC 1 chrVII:774133-774731 ( 6) CCGGAATCGAACCGGAGACCTCTCC 1 chrXVI:210019-210447 ( 18) GGGGAGTCGAACCCCGGTCTCCACG 1 chrVII:541729-542146 ( 1) GGGGAGTCGAACCCCGGTCTCCACG 1 chrIV:1016956-1017465 ( 56) GGGGAGTCGAACCCCGGTCTCCACG 1 chrXVI:860146-860739 ( 24) CCGGAATCGAACCGGGGGCCCAACG 1 chrIV:488455-489248 ( 5) CGAGGTTCGAACTCGGGATCTTCGC 1 chrVI:180657-181261 ( 74) CCGGAATCGAACCGGGGGCCCAACG 1 chrVII:845251-846098 ( 62) CCGGAATCGAACCGGGGGCCCAACG 1 chrXVI:572037-572588 ( 44) CCGGAATCGAACCGGGGGCCCAACG 1 chrII:326502-327172 ( 14) CGAGGTTCGAACTCGGGATCTTCGC 1 chrXVI:559987-560462 ( 33) TGTGGATCGAACACAGGACCTCCAG 1 chrVII:440569-440923 ( 29) TGTGGATCGAACACAGGACCTCCAG 1 chrIX:325544-326080 ( 25) TCGGATTTGAACCGATGATCTCCAC 1 chrVIII:358300-358761 ( 7) TGTGGATCGAACACAGGACCTCCAG 1 chrIX:174909-175221 ( 55) TCGGATTTGAACCGATGATCTCCAC 1 chrIV:1095134-1095644 ( 40) TGTGGATCGAACACAGGACCTCCAG 1 chrII:266215-266718 ( 1) TCGGATTTGAACCGATGATCTCCAC 1 chrIV:433593-434983 ( 35) TCGGATTTGAACCGATGATCTCCAC 1 chrX:58859-58959 ( 39) TCGGATTTGAACCGATGATCTCCAC 1 chrXVI:622297-622885 ( 8) TGTGGATCGAACACAGGACCTCCAG 1 chrX:374178-374278 ( 52) TGGGGGTCGAACCCATAATCTTCTG 1 chrV:469219-469748 ( 64) CCAGGATCGAACTGGGGACGTTCTG 1 chrX:378155-378255 ( 65) CCAGGATCGAACTGGGGACGTTCTG 1 chrVII:823354-823769 ( 11) CCAGGATCGAACTGGGGACGTTCTG 1 chrV:438471-439002 ( 54) CCAGGATCGAACTGGGGACGTTCTG 1 chrXIII:372205-372748 ( 28) CCAGGATCGAACTGGGGACGTTCTG 1 chrXIII:480399-480823 ( 69) GGGGGCTCGAACCCCTAACCTTATG 1 chrXVI:769018-769494 ( 10) GGGGGCTCGAACCCCTGACATTTCG 1 chrXII:873985-876872 ( 60) GGGGGCTCGAACCCCTGACATTTCG 1 chrIV:1201549-1202107 ( 11) GGGGGCTCGAACCCCTAACCTTATG 1 chrXIII:808074-808525 ( 6) CCGGATTCGAACTGGGGTTGTTCGG 1 chrIV:884297-884678 ( 23) TGGGGTTTGAACCCACGACGGTCGC 1 chrVI:210298-211040 ( 9) GGCGAGTCGAACGCCCGATCTCAAG 1 chrXV:288079-288501 ( 7) GGCGAGTCGAACGCCCGATCTCAAG 1 chrXIII:168683-169007 ( 55) GGCGAGTCGAACGCCCGATCTCAAG 1 chrXIII:837750-838207 ( 55) GGCGAGTCGAACGCCCGATCTCAAG 1 chrVI:137237-137732 ( 61) TGAGGGTTGAACTCACGATCTTGCG 1 chrVII:730975-731438 ( 21) TGAGGGTTGAACTCACGATCTTGCG 1 chrXIV:102586-102998 ( 14) TGAGGGTTGAACTCACGATCTTGCG 1 chrXV:228154-228557 ( 66) TGAGGGTTGAACTCACGATCTTGCG 1 chrXVI:810584-810870 ( 39) TGAGGGTTGAACTCACGATCTTGCG 1 chrXI:302712-303225 ( 72) CAGGAATTGAACCTGCAACCCTTCG 1 chrVII:287128-287661 ( 15) CAGGAATTGAACCTGCAACCCTTCG 1 chrXII:374217-374646 ( 13) CAGGACTTGAACCTGGAATCTTCTG 1 chrXV:340035-340569 ( 56) CAGGACTTGAACCTGGAATCTTCTG 1 chrIV:619694-620222 ( 70) CAGGACTTGAACCTGGAATCTTCTG 1 chrX:204518-204618 ( 8) GGGGAATTGAACCCCGATCTGGCAC 1 chrXII:426909-427469 ( 31) GGGGAATTGAACCCCGATCTGGCAC 1 chrXV:571710-572327 ( 28) GGGGAATTGAACCCCGATCTGGCAC 1 chrIV:568715-569339 ( 25) GGGGAATTGAACCCCGATCTGGCAC 1 chrII:405683-406289 ( 62) GGGGAATTGAACCCCGATCTGGCAC 1 chrVII:661566-662019 ( 45) TCAGAATTGAACTAACGACCTTTGC 1 chrXVI:744088-744606 ( 25) TCAGAATTGAACTAACGACCTTTGC 1 chrX:517631-517731 ( 32) TCGGTTTCGATCCGAGGACATCAGG 1 chrIII:149763-150171 ( 41) TCGGTTTCGATCCGAGGACATCAGG 1 chrXVI:435631-436188 ( 43) TCAGGATCGAACTAAGGACCAACAG 1 chrXII:280691-282491 ( 25) GCCGGATTGAAGCGATAATCCTTAG 1 chrIV:519660-519952 ( 46) GCGAGTTCGAACCTCGCATCCTTCA 1 chrX:424237-424337 ( 13) GCGAGTTCGAACCTCGCATCCTTCA 1 chrXIV:725899-726344 ( 63) GCGAGTTCGAACCTCGCATCCTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATYGAACCSVGGAYCTYCVG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 45600 bayes= 9.43465 E= 8.1e-231 -1283 65 77 20 -213 112 129 -1283 -45 -155 168 -213 -286 -1283 225 -1283 80 -1283 117 -345 68 -87 -7 -45 -1283 -1283 -1283 174 -1283 165 -1283 31 -1283 -1283 231 -1283 174 -1283 -1283 -1283 170 -1283 -1283 -345 -1283 229 -387 -1283 -213 168 -187 -36 -286 129 83 -145 25 71 65 -1283 -345 -7 152 -54 -64 -229 193 -1283 131 -1283 -107 -86 -1283 152 -1283 51 -245 180 -71 -128 -444 29 -129 114 -213 112 -155 51 -45 129 -155 -45 -6 83 3 -99 -286 58 171 -1283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATYGAACCSVGGAYCTYCVG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 73 E= 8.1e-231 0.000000 0.315068 0.342466 0.342466 0.068493 0.438356 0.493151 0.000000 0.219178 0.068493 0.643836 0.068493 0.041096 0.000000 0.958904 0.000000 0.520548 0.000000 0.452055 0.027397 0.479452 0.109589 0.191781 0.219178 0.000000 0.000000 0.000000 1.000000 0.000000 0.630137 0.000000 0.369863 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.972603 0.000000 0.000000 0.027397 0.000000 0.986301 0.013699 0.000000 0.068493 0.643836 0.054795 0.232877 0.041096 0.493151 0.356164 0.109589 0.356164 0.328767 0.315068 0.000000 0.027397 0.191781 0.575342 0.205479 0.191781 0.041096 0.767123 0.000000 0.739726 0.000000 0.095890 0.164384 0.000000 0.575342 0.000000 0.424658 0.054795 0.698630 0.123288 0.123288 0.013699 0.246575 0.082192 0.657534 0.068493 0.438356 0.068493 0.424658 0.219178 0.493151 0.068493 0.219178 0.287671 0.356164 0.205479 0.150685 0.041096 0.301370 0.657534 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATYGAACCSVGGAYCTYCVG MEME-1 regular expression -------------------------------------------------------------------------------- [GTC][GC][GA]G[AG][AT]T[CT]GAAC[CT][CG][ACG][GT]GA[CT]C[TC][CT][CAT][CAG][GC] -------------------------------------------------------------------------------- Time 353.03 secs. ******************************************************************************** ******************************************************************************** MOTIF ARTCWGRCGCCTTAAMCMACTNGGCCAAG MEME-2 width = 29 sites = 27 llr = 618 E-value = 1.5e-099 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAAMCMACTNGGCCAAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a4:13:4::::2:9741481:2:3:1761 pos.-specific C ::172117:9a:::16941722:199:23 probability G :632174:a::::12::21::3961:::6 matrix T ::6:42:3:1:8a::::::1831:::321 bits 2.3 * * 2.1 * * 1.9 * *** * * 1.6 * *** * * * ** Relative 1.4 * *** ** * * ** Entropy 1.2 ** * ******* ** * * ** (33.0 bits) 0.9 ** * * ******* ** *** * *** 0.7 **** * ********** *** ***** * 0.5 **** **************** ***** * 0.2 **** **************** ******* 0.0 ----------------------------- Multilevel AGTCTGGCGCCTTAACCAACTGGGCCAAG consensus AG A AT A C T A TTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAAMCMACTNGGCCAAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXI:84016-84425 - 43 4.31e-14 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAAC CCTCCATACA chrIII:127486-127963 - 47 4.31e-14 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCATG GAGTCATTTT chrXII:962842-963254 + 24 4.31e-14 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAAC CCTCCGTCGA chrX:424237-424337 + 63 4.31e-14 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAAC CCTCCATCT chrXI:74439-74807 - 56 4.31e-14 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCATG GAGTCTAATT chrXV:228154-228557 - 31 4.31e-14 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCATG GAGTCTAATA chrXVI:810584-810870 - 4 4.31e-14 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCATG GAG chrII:197264-197828 - 3 2.54e-13 CCGCGTTATT AGCACGGTGCCTTAACCAACTGGGCCAAG AG chrXIV:602065-602592 - 39 2.54e-13 CCGCGTTATT AGCACGGTGCCTTAACCAACTGGGCCAAG AGACCATTGT chrXII:734602-734978 - 67 2.54e-13 TTATT AGCACGGTGCCTTAACCAACTGGGCCAAG AGACCAAACT chrVII:205339-205769 - 22 6.03e-12 ATATTTCTTG AATCAGGCGCCTTAGACCGCTCGGCCAAA CAACCACTTA chrXII:628232-628635 - 5 6.03e-12 TATTTTCTTG AATCAGGCGCCTTAGACCGCTCGGCCAAA CAAC chrXI:379446-379912 - 56 1.38e-11 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCTATTA chrV:469219-469748 - 29 1.38e-11 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCAATTA chrX:378155-378255 - 30 1.38e-11 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCTATTA chrV:438471-439002 - 19 1.38e-11 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCTAATT chrXIII:372205-372748 + 59 1.38e-11 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCAGGTT chrVI:167261-167659 - 33 1.89e-10 GATAAATTAC AGTCTTGCGCCTTAAACCAACTTGGCTAC CGAGAGTCGT chrVI:210298-211040 + 54 1.89e-10 GGTAAATTAC AGTCTTGCGCCTTAAACCAACTTGGCTAC CGAGAGTCGT chrXIII:168683-169007 - 6 1.89e-10 GATAAATTAC AGTCTTGCGCCTTAAACCAACTTGGCTAC CGAGA chrXIII:837750-838207 - 6 1.89e-10 GGTAAATTAC AGTCTTGCGCCTTAAACCAACTTGGCTAC CGAGA chrIX:174909-175221 - 20 6.67e-10 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATAG AAGCTCGTAC chrIV:433593-434983 + 66 6.67e-10 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATAG AAGCTT chrX:58859-58959 + 70 6.67e-10 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATAG AA chrIV:488455-489248 + 36 8.08e-10 TCGCCGTGTA AAGGCGACGTCTTGAACCACTGGACCATT GGACCGGAAA chrII:326502-327172 + 45 8.08e-10 TCGCCGTGTA AAGGCGACGTCTTGAACCACTGGACCATT GGACCCGGAA chrVIII:132802-133365 + 42 9.05e-09 AAAGATTTCT AATCTTTCGCCTTAACCACTCGGCCAAGT TGCCACTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAAMCMACTNGGCCAAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:84016-84425 4.3e-14 42_[-2]_29 chrIII:127486-127963 4.3e-14 46_[-2]_25 chrXII:962842-963254 4.3e-14 23_[+2]_48 chrX:424237-424337 4.3e-14 62_[+2]_9 chrXI:74439-74807 4.3e-14 55_[-2]_16 chrXV:228154-228557 4.3e-14 30_[-2]_41 chrXVI:810584-810870 4.3e-14 3_[-2]_68 chrII:197264-197828 2.5e-13 2_[-2]_69 chrXIV:602065-602592 2.5e-13 38_[-2]_33 chrXII:734602-734978 2.5e-13 66_[-2]_5 chrVII:205339-205769 6e-12 21_[-2]_50 chrXII:628232-628635 6e-12 4_[-2]_67 chrXI:379446-379912 1.4e-11 55_[-2]_16 chrV:469219-469748 1.4e-11 28_[-2]_43 chrX:378155-378255 1.4e-11 29_[-2]_42 chrV:438471-439002 1.4e-11 18_[-2]_53 chrXIII:372205-372748 1.4e-11 58_[+2]_13 chrVI:167261-167659 1.9e-10 32_[-2]_39 chrVI:210298-211040 1.9e-10 53_[+2]_18 chrXIII:168683-169007 1.9e-10 5_[-2]_66 chrXIII:837750-838207 1.9e-10 5_[-2]_66 chrIX:174909-175221 6.7e-10 19_[-2]_52 chrIV:433593-434983 6.7e-10 65_[+2]_6 chrX:58859-58959 6.7e-10 69_[+2]_2 chrIV:488455-489248 8.1e-10 35_[+2]_36 chrII:326502-327172 8.1e-10 44_[+2]_27 chrVIII:132802-133365 9e-09 41_[+2]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAAMCMACTNGGCCAAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARTCWGRCGCCTTAAMCMACTNGGCCAAG width=29 seqs=27 chrXI:84016-84425 ( 43) AGTCTGCCGCCTTAGACCACTCGGCCAAC 1 chrIII:127486-127963 ( 47) AGTCGCACGCCTTAACCAACTTGGCCATG 1 chrXII:962842-963254 ( 24) AGTCTGCCGCCTTAGACCACTCGGCCAAC 1 chrX:424237-424337 ( 63) AGTCTGCCGCCTTAGACCACTCGGCCAAC 1 chrXI:74439-74807 ( 56) AGTCGCACGCCTTAACCAACTTGGCCATG 1 chrXV:228154-228557 ( 31) AGTCGCACGCCTTAACCAACTTGGCCATG 1 chrXVI:810584-810870 ( 4) AGTCGCACGCCTTAACCAACTTGGCCATG 1 chrII:197264-197828 ( 3) AGCACGGTGCCTTAACCAACTGGGCCAAG 1 chrXIV:602065-602592 ( 39) AGCACGGTGCCTTAACCAACTGGGCCAAG 1 chrXII:734602-734978 ( 67) AGCACGGTGCCTTAACCAACTGGGCCAAG 1 chrVII:205339-205769 ( 22) AATCAGGCGCCTTAGACCGCTCGGCCAAA 1 chrXII:628232-628635 ( 5) AATCAGGCGCCTTAGACCGCTCGGCCAAA 1 chrXI:379446-379912 ( 56) AAGCAGATGCCATAACCGACTAGACCACG 1 chrV:469219-469748 ( 29) AAGCAGATGCCATAACCGACTAGACCACG 1 chrX:378155-378255 ( 30) AAGCAGATGCCATAACCGACTAGACCACG 1 chrV:438471-439002 ( 19) AAGCAGATGCCATAACCGACTAGACCACG 1 chrXIII:372205-372748 ( 59) AAGCAGATGCCATAACCGACTAGACCACG 1 chrVI:167261-167659 ( 33) AGTCTTGCGCCTTAAACCAACTTGGCTAC 1 chrVI:210298-211040 ( 54) AGTCTTGCGCCTTAAACCAACTTGGCTAC 1 chrXIII:168683-169007 ( 6) AGTCTTGCGCCTTAAACCAACTTGGCTAC 1 chrXIII:837750-838207 ( 6) AGTCTTGCGCCTTAAACCAACTTGGCTAC 1 chrIX:174909-175221 ( 20) AGTGTGGCGCCTTACCAACTTGGCCATAG 1 chrIV:433593-434983 ( 66) AGTGTGGCGCCTTACCAACTTGGCCATAG 1 chrX:58859-58959 ( 70) AGTGTGGCGCCTTACCAACTTGGCCATAG 1 chrIV:488455-489248 ( 36) AAGGCGACGTCTTGAACCACTGGACCATT 1 chrII:326502-327172 ( 45) AAGGCGACGTCTTGAACCACTGGACCATT 1 chrVIII:132802-133365 ( 42) AATCTTTCGCCTTAACCACTCGGCCAAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAAMCMACTNGGCCAAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.2123 E= 1.5e-099 174 -1140 -1140 -1140 31 -1140 165 -1140 -1140 -85 37 107 -143 181 -12 -1140 -21 -12 -44 45 -1140 -44 173 -69 45 -85 114 -301 -1140 181 -1140 -1 -1140 -1140 231 -1140 -1140 220 -1140 -201 -1140 231 -1140 -1140 -69 -1140 -1140 145 -1140 -1140 -1140 174 163 -1140 -144 -1140 123 -85 -12 -1140 45 156 -1140 -1140 -143 214 -1140 -1140 45 102 -12 -1140 138 -44 -144 -1140 -101 181 -1140 -101 -1140 -12 -1140 145 -69 -12 73 -1 -1140 -1140 208 -101 -21 -44 156 -1140 -1140 208 -44 -1140 -101 208 -1140 -1140 131 -1140 -1140 -21 89 -12 -244 -43 -201 37 147 -143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAAMCMACTNGGCCAAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 27 E= 1.5e-099 1.000000 0.000000 0.000000 0.000000 0.370370 0.000000 0.629630 0.000000 0.000000 0.111111 0.259259 0.629630 0.111111 0.703704 0.185185 0.000000 0.259259 0.185185 0.148148 0.407407 0.000000 0.148148 0.666667 0.185185 0.407407 0.111111 0.444444 0.037037 0.000000 0.703704 0.000000 0.296296 0.000000 0.000000 1.000000 0.000000 0.000000 0.925926 0.000000 0.074074 0.000000 1.000000 0.000000 0.000000 0.185185 0.000000 0.000000 0.814815 0.000000 0.000000 0.000000 1.000000 0.925926 0.000000 0.074074 0.000000 0.703704 0.111111 0.185185 0.000000 0.407407 0.592593 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.407407 0.407407 0.185185 0.000000 0.777778 0.148148 0.074074 0.000000 0.148148 0.703704 0.000000 0.148148 0.000000 0.185185 0.000000 0.814815 0.185185 0.185185 0.333333 0.296296 0.000000 0.000000 0.851852 0.148148 0.259259 0.148148 0.592593 0.000000 0.000000 0.851852 0.148148 0.000000 0.148148 0.851852 0.000000 0.000000 0.740741 0.000000 0.000000 0.259259 0.555556 0.185185 0.037037 0.222222 0.074074 0.259259 0.555556 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAAMCMACTNGGCCAAG MEME-2 regular expression -------------------------------------------------------------------------------- A[GA][TG]C[TA]G[GA][CT]GCCTTAA[CA]C[AC]ACT[GT]G[GA]CC[AT][AT][GC] -------------------------------------------------------------------------------- Time 675.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGYKYAGTBGGTAKMRCGYYMGG MEME-3 width = 24 sites = 21 llr = 439 E-value = 3.4e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGYKYAGTBGGTAKMRCGYYMGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8::::a2:::::a:44:1::4:2 pos.-specific C :::6:5::12:1:::6:a:34631 probability G :2a:6::8:4a62:6:6:6:::76 matrix T a::445::94:28:4:::276::: bits 2.3 * * * 2.1 * * * 1.9 * * * * * * 1.6 * * * * * * Relative 1.4 * * ** * * * * Entropy 1.2 ***** *** * ***** * (30.2 bits) 0.9 ********* ******** * ** 0.7 ********* ************** 0.5 ********* ************** 0.2 ************************ 0.0 ------------------------ Multilevel TAGCGTAGTGGGTAGCGCGTTCGG consensus TTC T T TAA TCCACA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGYKYAGTBGGTAKMRCGYYMGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrVII:115266-115756 + 34 1.70e-13 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTTCGG CTTTTAAGCG chrXVI:769018-769494 - 66 1.70e-13 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTTCGG CTTTTAAGCG chrIV:359361-359778 + 65 1.70e-13 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTTCGG CTTTTAAGCG chrXII:873985-876872 + 5 1.70e-13 TTGT TAGCTCAGTTGGTAGAGCGTTCGG CTTTTAAGCG chrXI:219609-220158 + 69 2.50e-11 ATAGGGCGTG TGGCGTAGTCGGTAGCGCGCTCCC TTAGCATG chrXIII:320957-321445 - 38 2.50e-11 ATCGGGCGTG TGGCGTAGTCGGTAGCGCGCTCCC TTAGCATGGG chrXII:656850-657193 - 5 2.50e-11 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCTCCC TTAG chrXIV:374664-375111 + 39 5.74e-11 TAAGCGGACT TAGCTCAGTTGGGAGAGCGCCAGA CTGAAGAAAA chrVIII:358300-358761 - 59 5.74e-11 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCCAGA CTGAAGAAAA chrVIII:237751-238075 - 46 5.74e-11 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCCAGA CTGAAGAAAA chrXVI:622297-622885 - 60 5.74e-11 TATGCGGATT TAGCTCAGTTGGGAGAGCGCCAGA CTGAAGAAAA chrV:249800-250773 + 57 1.21e-10 ACTGGTCCTA TAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrV:130870-131436 - 20 1.21e-10 AGAGGTTTTA TAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrIV:520736-521176 + 73 1.21e-10 TAGGGTCCTA TAGTGTAGTGGTTATCACTTTCGG TTTT chrXIII:808074-808525 - 38 1.21e-10 AAAGGTCCTA TAGTGTAGTGGTTATCACTTTCGG TTCTGATCCG chrII:350621-351059 + 44 1.21e-10 AAGGGTTTTA TAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrIV:1351992-1353065 - 30 3.67e-09 ATAGCCTTGT TGGCGCAATCGGTAGCGCGTATGA CTCTTAATCA chrIV:1175600-1176046 + 63 3.67e-09 AAAGCTTCAG TAGCTCAGTAGGAAGAGCGTCAGT CTCATAATCT chrIX:370252-370583 + 57 5.88e-09 TAATCCGATA TAGTGTAACGGCTATCACATCACG CTTTCACCGT chrII:644864-645440 + 72 5.88e-09 TTATCCGATA TAGTGTAACGGCTATCACATCACG CTTTC chrXVI:210019-210447 - 50 5.88e-09 TTGTCCGATA TAGTGTAACGGCTATCACATCACG CTTTCACCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGYKYAGTBGGTAKMRCGYYMGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:115266-115756 1.7e-13 33_[+3]_43 chrXVI:769018-769494 1.7e-13 65_[-3]_11 chrIV:359361-359778 1.7e-13 64_[+3]_12 chrXII:873985-876872 1.7e-13 4_[+3]_72 chrXI:219609-220158 2.5e-11 68_[+3]_8 chrXIII:320957-321445 2.5e-11 37_[-3]_39 chrXII:656850-657193 2.5e-11 4_[-3]_72 chrXIV:374664-375111 5.7e-11 38_[+3]_38 chrVIII:358300-358761 5.7e-11 58_[-3]_18 chrVIII:237751-238075 5.7e-11 45_[-3]_31 chrXVI:622297-622885 5.7e-11 59_[-3]_17 chrV:249800-250773 1.2e-10 56_[+3]_20 chrV:130870-131436 1.2e-10 19_[-3]_57 chrIV:520736-521176 1.2e-10 72_[+3]_4 chrXIII:808074-808525 1.2e-10 37_[-3]_39 chrII:350621-351059 1.2e-10 43_[+3]_33 chrIV:1351992-1353065 3.7e-09 29_[-3]_47 chrIV:1175600-1176046 3.7e-09 62_[+3]_14 chrIX:370252-370583 5.9e-09 56_[+3]_20 chrII:644864-645440 5.9e-09 71_[+3]_5 chrXVI:210019-210447 5.9e-09 49_[-3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGYKYAGTBGGTAKMRCGYYMGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGYKYAGTBGGTAKMRCGYYMGG width=24 seqs=21 chrVII:115266-115756 ( 34) TAGCTCAGTTGGTAGAGCGTTCGG 1 chrXVI:769018-769494 ( 66) TAGCTCAGTTGGTAGAGCGTTCGG 1 chrIV:359361-359778 ( 65) TAGCTCAGTTGGTAGAGCGTTCGG 1 chrXII:873985-876872 ( 5) TAGCTCAGTTGGTAGAGCGTTCGG 1 chrXI:219609-220158 ( 69) TGGCGTAGTCGGTAGCGCGCTCCC 1 chrXIII:320957-321445 ( 38) TGGCGTAGTCGGTAGCGCGCTCCC 1 chrXII:656850-657193 ( 5) TGGCGTAGTCGGTAGCGCGCTCCC 1 chrXIV:374664-375111 ( 39) TAGCTCAGTTGGGAGAGCGCCAGA 1 chrVIII:358300-358761 ( 59) TAGCTCAGTTGGGAGAGCGCCAGA 1 chrVIII:237751-238075 ( 46) TAGCTCAGTTGGGAGAGCGCCAGA 1 chrXVI:622297-622885 ( 60) TAGCTCAGTTGGGAGAGCGCCAGA 1 chrV:249800-250773 ( 57) TAGTGTAGTGGTTATCACTTTCGG 1 chrV:130870-131436 ( 20) TAGTGTAGTGGTTATCACTTTCGG 1 chrIV:520736-521176 ( 73) TAGTGTAGTGGTTATCACTTTCGG 1 chrXIII:808074-808525 ( 38) TAGTGTAGTGGTTATCACTTTCGG 1 chrII:350621-351059 ( 44) TAGTGTAGTGGTTATCACTTTCGG 1 chrIV:1351992-1353065 ( 30) TGGCGCAATCGGTAGCGCGTATGA 1 chrIV:1175600-1176046 ( 63) TAGCTCAGTAGGAAGAGCGTCAGT 1 chrIX:370252-370583 ( 57) TAGTGTAACGGCTATCACATCACG 1 chrII:644864-645440 ( 72) TAGTGTAACGGCTATCACATCACG 1 chrXVI:210019-210447 ( 50) TAGTGTAACGGCTATCACATCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGYKYAGTBGGTAKMRCGYYMGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 46200 bayes= 10.5974 E= 3.4e-055 -1104 -1104 -1104 174 144 -1104 -8 -1104 -1104 -1104 231 -1104 -1104 162 -1104 35 -1104 -1104 151 52 -1104 124 -1104 81 174 -1104 -1104 -1104 -65 -1104 201 -1104 -1104 -49 -1104 152 -265 -8 92 35 -1104 -1104 231 -1104 -1104 -49 162 -33 -265 -1104 -8 135 174 -1104 -1104 -1104 -1104 -1104 162 35 52 151 -1104 -1104 35 -1104 162 -1104 -1104 231 -1104 -1104 -106 -1104 162 -33 -1104 73 -1104 116 -265 92 -1104 93 35 151 -1104 -265 -1104 51 183 -1104 -33 -49 151 -265 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGYKYAGTBGGTAKMRCGYYMGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 21 E= 3.4e-055 0.000000 0.000000 0.000000 1.000000 0.809524 0.000000 0.190476 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.619048 0.000000 0.380952 0.000000 0.000000 0.571429 0.428571 0.000000 0.476190 0.000000 0.523810 1.000000 0.000000 0.000000 0.000000 0.190476 0.000000 0.809524 0.000000 0.000000 0.142857 0.000000 0.857143 0.047619 0.190476 0.380952 0.380952 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.619048 0.238095 0.047619 0.000000 0.190476 0.761905 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.619048 0.380952 0.428571 0.571429 0.000000 0.000000 0.380952 0.000000 0.619048 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.619048 0.238095 0.000000 0.333333 0.000000 0.666667 0.047619 0.380952 0.000000 0.571429 0.380952 0.571429 0.000000 0.047619 0.000000 0.285714 0.714286 0.000000 0.238095 0.142857 0.571429 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGYKYAGTBGGTAKMRCGYYMGG MEME-3 regular expression -------------------------------------------------------------------------------- TAG[CT][GT][TC]AGT[GT]G[GT]TA[GT][CA][GA]C[GT][TC][TC][CA][GC][GA] -------------------------------------------------------------------------------- Time 995.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:350621-351059 4.27e-13 43_[+3(1.21e-10)]_7_[-1(2.78e-10)]_\ 1 chrVIII:450922-453098 1.75e-02 100 chrXV:135780-136847 7.08e-01 100 chrVII:319224-320134 4.31e-01 100 chrXI:457972-459358 2.92e-01 100 chrI:190248-192052 3.41e-02 48_[+2(6.86e-05)]_23 chrIV:1488550-1490808 4.95e-01 100 chrXVI:821567-822427 8.68e-01 100 chrXIII:808074-808525 2.12e-12 5_[+1(2.51e-09)]_7_[-3(1.21e-10)]_\ 39 chrVII:592122-593030 6.17e-01 100 chrVII:483364-483750 2.04e-01 100 chrXI:617690-619262 9.96e-01 100 chrIV:768268-769283 1.29e-01 100 chrIII:168063-168518 4.86e-06 69_[+1(2.78e-10)]_6 chrXVI:455180-455375 6.13e-01 100 chrIV:1201549-1202107 2.64e-06 10_[-1(9.96e-10)]_65 chrXII:201668-202942 6.37e-01 100 chrIX:393267-393766 9.62e-01 100 chrXIV:585388-586556 7.25e-01 100 chrIV:1079115-1080932 9.21e-01 100 chrXII:628232-628635 1.78e-07 4_[-2(6.03e-12)]_67 chrIX:389619-390929 5.58e-01 100 chrII:326502-327172 1.38e-12 13_[+1(3.63e-10)]_6_[+2(8.08e-10)]_\ 27 chrXII:95548-95862 6.39e-01 100 chrXVI:296904-298358 1.33e-01 100 chrVII:531395-531767 3.77e-01 100 chrXV:854032-854793 1.99e-01 100 chrXII:348006-348822 6.07e-01 100 chrVII:970218-970505 1.46e-01 100 chrXV:903569-905733 4.13e-01 100 chrXIII:225371-226668 4.42e-01 100 chrV:288178-288735 3.27e-01 100 chrXVI:622297-622885 9.26e-14 7_[+1(6.08e-10)]_27_[-3(5.74e-11)]_\ 17 chrII:612242-614749 1.20e-01 100 chrIV:866283-867888 9.25e-02 100 chrXV:796674-798841 2.98e-01 100 chrIV:1016956-1017465 5.35e-07 55_[+1(3.18e-10)]_20 chrXIV:24086-27147 3.89e-01 100 chrVII:271019-272192 3.47e-03 66_[+2(8.03e-05)]_5 chrXII:873985-876872 1.03e-15 4_[+3(1.70e-13)]_31_[-1(9.96e-10)]_\ 16 chrVIII:475497-475892 3.48e-06 70_[+1(2.42e-10)]_5 chrX:745095-745195 5.86e-01 100 chrVII:427244-427743 2.47e-01 100 chrX:122175-122275 6.39e-01 100 chrXII:1003137-1004010 3.05e-02 25_[+3(5.90e-05)]_51 chrXIII:372205-372748 8.45e-15 27_[+1(8.82e-10)]_6_[+2(1.38e-11)]_\ 13 chrXIV:330843-332516 7.67e-01 100 chrXIV:783718-784315 5.39e-01 100 chrVII:541729-542146 4.17e-06 [-1(3.18e-10)]_75 chrXVI:775203-776088 2.74e-01 100 chrXIII:170000-171291 2.26e-01 100 chrIX:197422-197958 3.07e-01 100 chrXV:710083-710542 8.49e-01 100 chrXIII:352097-353499 3.54e-02 16_[-1(2.65e-05)]_59 chrVIII:34421-36213 8.40e-01 100 chrXII:234567-235215 8.50e-01 100 chrX:542596-542696 7.88e-01 100 chrVII:226787-228511 9.76e-01 100 chrXVI:408107-408274 6.63e-01 100 chrVII:95228-97249 8.29e-01 100 chrXI:615822-617488 7.59e-01 100 chrXII:975792-976094 6.44e-01 100 chrXII:328360-330166 1.00e+00 100 chrXI:282588-284477 5.03e-01 100 chrV:362457-363300 9.23e-01 100 chrIV:1183171-1184155 3.02e-01 100 chrVII:370681-371571 3.33e-01 100 chrXIII:510586-512048 6.29e-01 100 chrXIV:253177-254229 7.04e-01 100 chrIII:107097-108754 2.15e-01 100 chrXII:728977-730326 7.13e-01 100 chrVIII:134049-134718 3.11e-06 25_[-1(2.78e-10)]_50 chrXI:339755-340993 2.37e-01 100 chrIII:149763-150171 2.26e-04 40_[-1(2.07e-07)]_35 chrXIII:124081-124495 7.50e-01 100 chrII:87629-88586 8.46e-01 100 chrV:435383-435923 3.73e-01 100 chrXII:656850-657193 2.07e-07 4_[-3(2.50e-11)]_72 chrIV:1277690-1279055 1.42e-01 100 chrXII:439651-442194 2.44e-01 100 chrVII:401368-401617 8.85e-01 100 chrXVI:572037-572588 4.62e-07 43_[-1(3.63e-10)]_32 chrVI:226294-227325 5.49e-01 100 chrXIV:725899-726344 1.39e-03 62_[-1(6.32e-07)]_13 chrVII:938912-940034 7.00e-01 100 chrXII:636620-639939 1.15e-01 100 chrII:88927-90502 9.27e-01 100 chrXII:1028255-1029766 9.97e-01 100 chrXV:1027714-1029448 3.26e-01 100 chrVIII:296953-297223 6.50e-01 100 chrVII:287128-287661 1.71e-04 14_[+1(2.64e-08)]_61 chrXI:302712-303225 9.13e-05 71_[-1(2.64e-08)]_4 chrXVI:172516-174092 8.64e-01 100 chrIV:359361-359778 1.03e-09 64_[+3(1.70e-13)]_12 chrXV:282016-282951 1.81e-01 100 chrVII:845251-846098 1.79e-07 61_[-1(3.63e-10)]_14 chrXVI:402685-407827 4.52e-01 100 chrXII:734602-734978 1.86e-09 66_[-2(2.54e-13)]_5 chrXVI:810584-810870 2.13e-15 3_[-2(4.31e-14)]_6_[-1(1.06e-08)]_\ 37 chrX:138947-139047 9.69e-01 100 chrVI:180657-181261 2.59e-06 73_[+1(3.63e-10)]_2 chrXII:339808-341757 1.49e-01 100 chrXVI:642350-643306 2.39e-01 100 chrXIII:161640-164368 4.02e-01 100 chrXII:604421-605632 9.52e-01 100 chrXVI:769018-769494 1.03e-15 9_[+1(9.96e-10)]_31_[-3(1.70e-13)]_\ 11 chrIV:464252-470444 1.78e-01 100 chrXVI:899976-900479 5.61e-01 100 chrIV:83356-83969 8.83e-01 100 chrXV:228154-228557 5.12e-15 30_[-2(4.31e-14)]_6_[-1(1.06e-08)]_\ 10 chrXIII:253129-253908 6.92e-01 100 chrIX:256022-256606 9.02e-01 100 chrVI:183093-184227 1.69e-01 100 chrVII:255145-255688 9.87e-01 100 chrV:176920-177469 6.26e-01 100 chrXVI:927944-928379 1.00e-01 100 chrXV:670930-671625 4.55e-01 100 chrXIII:90981-92158 1.71e-02 13_[-2(2.58e-05)]_58 chrIX:254170-254668 8.97e-01 100 chrXV:514208-514722 9.11e-01 100 chrVII:856522-857964 7.91e-01 100 chrXIII:810412-810818 3.98e-01 100 chrII:604167-607126 5.64e-01 100 chrIV:769541-770042 8.31e-01 100 chrV:486992-487625 9.55e-02 100 chrVII:649589-650902 4.82e-01 100 chrXVI:121754-124496 7.76e-01 100 chrXIV:61976-64751 8.51e-01 100 chrXV:967979-968838 6.14e-01 100 chrXI:46721-47003 6.43e-01 100 chrVII:786752-788714 3.34e-01 100 chrX:617695-617795 7.69e-01 100 chrXII:791396-791737 2.06e-01 100 chrXII:506084-507566 1.97e-01 100 chrIII:90797-91171 6.18e-01 100 chrXIII:861166-861735 6.35e-01 100 chrXIV:568058-568480 9.44e-01 100 chrIV:1461344-1461842 8.61e-01 100 chrVII:706892-707191 9.22e-01 100 chrXII:197799-199764 9.14e-01 100 chrII:59527-61140 2.65e-01 100 chrV:396252-398079 6.48e-01 100 chrIV:170481-170940 7.80e-01 100 chrXV:833241-833451 5.47e-01 100 chrX:621971-622071 3.65e-01 100 chrXIII:837750-838207 6.15e-12 5_[-2(1.89e-10)]_20_[-1(8.73e-09)]_\ 21 chrVII:640649-642206 9.44e-01 100 chrXI:74439-74807 5.36e-10 55_[-2(4.31e-14)]_16 chrXI:326414-327878 1.00e-03 51_[+3(1.49e-05)]_25 chrVIII:173582-176627 9.35e-01 100 chrXIV:229535-230978 2.14e-02 70_[+2(2.46e-05)]_1 chrVIII:125906-127784 7.77e-01 100 chrXIII:671911-674718 4.15e-01 100 chrXIII:168683-169007 6.15e-12 5_[-2(1.89e-10)]_20_[-1(8.73e-09)]_\ 21 chrX:58859-58959 6.17e-14 38_[+1(6.08e-10)]_6_[+2(6.67e-10)]_\ 2 chrI:166178-166885 8.09e-01 100 chrVII:738906-739702 8.90e-01 100 chrX:374178-374278 1.59e-07 51_[+1(7.81e-10)]_24 chrXVI:481455-482025 1.44e-01 100 chrXII:712233-712709 5.25e-01 100 chrVIII:237751-238075 6.45e-08 45_[-3(5.74e-11)]_31 chrXIII:420315-420774 8.42e-01 100 chrIV:340568-341656 9.15e-01 100 chrVII:438222-440107 8.35e-01 100 chrIV:802523-802835 9.39e-01 100 chrXII:645311-646159 9.83e-01 100 chrXIII:145987-147223 3.04e-01 100 chrVIII:410811-411721 9.62e-01 100 chrIV:1268540-1269664 8.09e-01 100 chrXV:232074-232865 9.71e-01 100 chrX:424237-424337 2.92e-13 12_[-1(6.32e-07)]_25_[+2(4.31e-14)]_\ 9 chrIV:520736-521176 2.16e-07 72_[+3(1.21e-10)]_4 chrXII:86932-87173 3.71e-01 100 chrXIV:301587-303843 7.11e-01 100 chrVIII:381353-383378 7.99e-01 100 chrXIV:660277-660909 4.99e-02 100 chrIV:306224-309560 5.67e-01 100 chrXIV:569516-570053 7.74e-01 100 chrX:569285-569385 7.31e-01 100 chrIX:315556-318642 3.37e-01 100 chrXII:1051970-1052202 2.20e-07 43_[+1(2.96e-11)]_32 chrXVI:828923-829570 9.93e-02 100 chrVI:106503-107032 7.99e-01 100 chrI:71159-73606 1.79e-01 100 chrXVI:819350-820255 2.10e-01 100 chrXV:831175-832857 3.09e-01 100 chrXI:312576-314001 5.70e-01 100 chrII:234908-237461 5.87e-01 100 chrV:116089-118299 2.64e-01 100 chrIV:1300474-1302535 1.73e-01 100 chrIV:117198-118194 6.96e-01 100 chrVIII:74851-75909 8.08e-01 100 chrXII:962842-963254 1.93e-10 23_[+2(4.31e-14)]_48 chrXII:282730-284109 1.09e-01 100 chrXVI:279945-282963 5.29e-01 100 chrIX:256824-258692 7.58e-01 100 chrXV:159140-161835 4.95e-01 100 chrXI:67805-70301 5.75e-01 100 chrIV:1175600-1176046 2.16e-05 62_[+3(3.67e-09)]_14 chrIII:150950-151560 5.84e-01 100 chrXV:216323-216835 8.46e-01 100 chrXIV:104579-105652 9.67e-01 100 chrXIII:258859-259417 9.28e-01 100 chrXIV:628176-628719 6.72e-01 100 chrVII:700406-701149 2.12e-01 100 chrXII:280691-282491 6.16e-04 24_[+1(5.31e-07)]_51 chrIV:913993-917137 2.78e-04 40_[+3(3.73e-07)]_36 chrX:523827-523927 5.93e-01 100 chrVII:609269-611467 9.90e-01 100 chrV:77619-79458 6.27e-01 100 chrXVI:577736-579556 3.20e-01 100 chrIV:433593-434983 6.17e-14 34_[+1(6.08e-10)]_6_[+2(6.67e-10)]_\ 6 chrXVI:502440-503262 6.18e-02 100 chrII:227000-227462 1.79e-01 100 chrXV:409053-409939 6.77e-01 100 chrXIII:67275-68103 4.24e-01 100 chrVI:53250-55932 6.01e-01 100 chrXVI:447331-448446 6.26e-01 100 chrXII:262953-263950 8.94e-01 100 chrXV:407544-408396 6.20e-02 100 chrIX:83768-85170 2.64e-01 100 chrIV:489777-490831 3.76e-02 41_[-3(6.81e-05)]_35 chrXVI:643845-646195 6.63e-01 100 chrIV:491014-492557 7.56e-01 100 chrX:521495-521595 1.71e-02 100 chrXIV:95974-96462 5.31e-01 100 chrVII:122029-123312 2.55e-01 100 chrXII:890742-890995 7.97e-01 100 chrVII:397985-400131 5.07e-01 100 chrXIII:159145-159720 1.47e-01 100 chrVII:598498-601192 9.12e-01 100 chrXV:980153-981071 8.04e-01 100 chrV:438471-439002 8.45e-15 18_[-2(1.38e-11)]_6_[-1(8.82e-10)]_\ 22 chrXV:882793-884258 8.72e-01 100 chrXII:459603-460690 6.77e-01 100 chrVII:115266-115756 2.06e-09 33_[+3(1.70e-13)]_43 chrIII:201-1180 2.77e-01 100 chrVII:544414-545826 4.15e-01 100 chrXIII:650814-653614 5.08e-01 100 chrXIV:288425-289064 3.58e-01 100 chrII:266215-266718 9.81e-06 [-1(6.08e-10)]_75 chrXII:231690-234384 5.22e-02 30_[-3(7.50e-05)]_46 chrV:85017-87153 7.27e-01 100 chrVII:328428-329216 7.83e-01 100 chrIV:1095134-1095644 2.77e-06 39_[+1(6.08e-10)]_36 chrIV:321737-323627 7.88e-01 100 chrXVI:744088-744606 3.84e-04 24_[-1(7.60e-08)]_51 chrVIII:388653-389199 3.43e-08 25_[+1(4.10e-11)]_50 chrXV:663502-664864 6.17e-01 100 chrIX:97252-97650 4.78e-01 100 chrXI:490778-491453 8.25e-01 100 chrXII:214629-215059 8.57e-01 100 chrIV:884297-884678 4.41e-05 22_[-1(5.86e-09)]_53 chrV:130870-131436 1.46e-06 19_[-3(1.21e-10)]_57 chrXII:1018102-1019529 2.35e-01 100 chrX:136039-136139 9.77e-01 100 chrXVI:718360-720115 9.78e-01 100 chrXVI:435631-436188 3.57e-05 42_[+1(2.22e-07)]_33 chrIV:1466578-1468454 5.69e-01 100 chrXIII:195953-196291 1.35e-07 4_[+1(4.10e-11)]_71 chrXV:622087-623298 7.89e-01 100 chrV:235347-235542 9.69e-01 100 chrV:443082-443333 2.20e-07 53_[+1(2.96e-11)]_22 chrXVI:210019-210447 9.09e-12 17_[+1(3.18e-10)]_7_[-3(5.88e-09)]_\ 27 chrXIII:222977-224128 9.20e-01 100 chrVII:805219-808258 4.80e-01 100 chrIV:619694-620222 2.97e-04 69_[+1(3.13e-08)]_6 chrIV:1162923-1164932 5.61e-01 100 chrXIV:602065-602592 5.78e-17 38_[-2(2.54e-13)]_6_[-1(2.96e-11)]_\ 2 chrXVI:653999-655042 6.92e-01 100 chrIV:43925-44560 1.52e-01 100 chrXII:951028-954793 3.76e-01 100 chrXIII:498729-501257 9.96e-01 100 chrII:644864-645440 9.30e-06 71_[+3(5.88e-09)]_5 chrV:311351-312280 6.43e-01 100 chrVII:661566-662019 4.28e-04 44_[-1(7.60e-08)]_31 chrVII:774133-774731 2.03e-06 5_[-1(3.18e-10)]_70 chrIX:174909-175221 6.17e-14 19_[-2(6.67e-10)]_6_[-1(6.08e-10)]_\ 21 chrXIII:539756-540799 6.22e-01 100 chrXII:196889-197533 2.44e-02 100 chrXIV:413517-414941 1.59e-01 100 chrXV:113522-113877 7.44e-01 100 chrIV:555407-557392 5.15e-02 100 chrVIII:358300-358761 9.26e-14 6_[+1(6.08e-10)]_27_[-3(5.74e-11)]_\ 18 chrXII:793737-796830 9.57e-01 100 chrI:130631-132256 5.60e-01 100 chrX:360180-360280 8.80e-02 100 chrXI:381630-382428 6.74e-01 100 chrVII:797989-800392 7.57e-01 100 chrIV:229628-231834 7.37e-01 100 chrVIII:372717-373935 6.58e-01 100 chrIV:221055-222330 9.26e-01 100 chrXI:257783-260009 8.37e-01 100 chrII:642824-643073 8.62e-01 100 chrIX:177528-178558 5.19e-01 100 chrIV:1075122-1075762 5.15e-01 100 chrII:602668-603456 2.69e-01 100 chrV:235773-237219 9.43e-01 100 chrVII:479010-483124 2.50e-01 100 chrXV:226535-226863 2.37e-01 100 chrXVI:131766-132250 9.65e-01 100 chrVII:364859-367014 9.27e-01 100 chrIV:667709-668542 6.29e-01 100 chrII:197264-197828 5.78e-17 2_[-2(2.54e-13)]_6_[-1(2.96e-11)]_\ 38 chrXII:809737-815731 5.50e-01 100 chrV:249800-250773 1.38e-06 56_[+3(1.21e-10)]_20 chrIX:336012-336606 8.92e-01 100 chrXI:202535-203306 4.33e-01 100 chrXIII:625968-627107 1.02e-01 100 chrII:405683-406289 1.74e-05 61_[-1(5.57e-08)]_14 chrXIII:407743-409377 4.60e-01 100 chrVIII:119708-121677 3.18e-01 100 chrXVI:309376-310342 8.27e-01 100 chrXIII:320957-321445 4.39e-14 4_[+1(3.18e-10)]_8_[-3(2.50e-11)]_\ 39 chrXIV:715500-716628 9.57e-01 100 chrXIV:102586-102998 1.23e-04 13_[-1(1.06e-08)]_62 chrIV:945792-946664 6.46e-01 100 chrVII:345384-346689 1.93e-01 100 chrVII:254197-254777 5.73e-01 100 chrXIV:499189-500841 3.13e-01 100 chrXIII:362939-363981 7.23e-01 100 chrVII:1048804-1050745 3.38e-01 100 chrV:305854-307690 7.58e-01 100 chrXIV:217283-217817 4.32e-01 100 chrIV:541248-542115 1.02e-01 100 chrX:294611-294711 1.16e-01 100 chrI:141598-143717 2.01e-01 100 chrXV:1048950-1049921 9.11e-01 100 chrXV:315795-316355 1.33e-03 43_[-3(4.83e-06)]_33 chrVII:823354-823769 1.53e-05 10_[-1(8.82e-10)]_65 chrXV:87340-88366 8.87e-01 100 chrXIV:405191-406075 2.93e-02 100 chrII:165102-165487 1.85e-01 100 chrX:647685-647785 3.56e-01 100 chrIII:127486-127963 5.16e-10 46_[-2(4.31e-14)]_25 chrIX:386369-386918 9.23e-02 61_[+3(7.64e-05)]_15 chrXIII:886775-889579 9.26e-01 100 chrXV:976385-976866 2.25e-01 100 chrXII:521411-522123 3.42e-01 100 chrXIV:721985-723281 6.74e-01 100 chrXIII:747318-748121 3.66e-01 100 chrII:333291-334121 3.19e-01 100 chrXIII:873624-874195 4.74e-01 100 chrVII:23933-25431 1.34e-01 100 chrXII:713131-713680 9.82e-01 100 chrXV:504996-506711 9.78e-01 100 chrXVI:689411-689933 3.13e-01 100 chrXI:158133-159327 9.26e-01 100 chrIV:721044-722122 9.24e-01 100 chrIV:1359463-1360855 8.54e-01 100 chrXV:977346-979835 8.85e-01 100 chrVII:779378-779760 8.30e-01 100 chrVI:224313-226031 6.01e-02 100 chrX:293697-293797 2.50e-01 100 chrIX:68271-69550 8.88e-01 100 chrXIII:131502-132087 9.44e-01 100 chrXV:461839-462110 7.05e-01 100 chrXI:163245-165458 9.59e-01 100 chrXVI:731600-732284 1.52e-01 100 chrXV:288079-288501 4.31e-05 6_[-1(8.73e-09)]_69 chrII:679625-682720 5.93e-01 100 chrX:73467-73567 1.65e-01 100 chrXV:438481-439052 9.97e-01 100 chrIV:757491-758399 4.25e-01 100 chrVII:730975-731438 1.04e-04 20_[-1(1.06e-08)]_55 chrXIII:219232-221175 9.17e-01 100 chrIV:568715-569339 3.48e-04 24_[-1(5.57e-08)]_51 chrXVI:338706-341432 4.65e-01 100 chrXV:79735-82016 7.40e-01 100 chrII:306941-307610 6.93e-01 100 chrXV:619112-621299 2.00e-01 100 chrIII:227757-228340 3.76e-01 100 chrVII:1004032-1004411 8.99e-01 100 chrX:196205-196305 9.10e-01 100 chrVII:310559-312665 6.67e-01 100 chrVII:648762-649334 4.17e-02 100 chrXI:463378-465064 8.03e-02 100 chrVII:920176-920794 4.59e-01 100 chrX:569680-569780 8.08e-01 100 chrVII:561437-561716 9.93e-01 100 chrII:167774-169768 3.04e-01 100 chrXII:47637-49612 7.89e-01 100 chrV:266139-268195 6.45e-01 100 chrXI:517381-521735 4.70e-01 100 chrV:66450-69682 6.93e-02 100 chrV:298692-301613 3.91e-01 100 chrVII:515779-518988 9.17e-01 100 chrX:154611-154711 9.35e-01 100 chrIII:123382-123818 8.36e-10 35_[+1(5.19e-14)]_40 chrXI:141703-144016 6.07e-01 100 chrIII:220317-222328 9.85e-01 100 chrIX:96457-97029 5.71e-01 100 chrIV:1269835-1271054 2.77e-01 100 chrIV:1351992-1353065 7.24e-06 29_[-3(3.67e-09)]_47 chrXI:99048-100244 9.52e-01 100 chrVII:736202-736839 3.80e-01 100 chrX:378155-378255 8.45e-15 29_[-2(1.38e-11)]_6_[-1(8.82e-10)]_\ 11 chrVI:191181-191753 3.33e-01 100 chrIX:325544-326080 8.68e-06 24_[-1(6.08e-10)]_51 chrXIII:287976-289671 7.83e-01 100 chrXIV:349939-350613 1.20e-01 100 chrXVI:639562-641751 7.81e-01 100 chrX:354184-354284 7.89e-01 100 chrIV:488455-489248 1.38e-12 4_[+1(3.63e-10)]_6_[+2(8.08e-10)]_\ 36 chrV:60808-62125 9.67e-01 100 chrV:260448-261294 9.24e-02 100 chrV:460541-462862 7.87e-01 100 chrXIII:123002-123886 1.09e-01 100 chrXIV:721153-721779 7.78e-01 100 chrIV:416896-417324 2.22e-01 100 chrIV:519660-519952 2.85e-03 45_[+1(6.32e-07)]_30 chrX:414645-414745 6.78e-02 100 chrXI:162428-162667 3.18e-01 100 chrV:51645-53936 6.05e-01 100 chrVIII:132802-133365 1.68e-06 41_[+2(9.05e-09)]_30 chrXIV:280879-283451 2.71e-01 100 chrIV:1305404-1306074 9.81e-01 100 chrV:99872-100280 8.65e-01 100 chrVI:75145-76376 1.09e-01 100 chrXIV:546570-547632 1.11e-01 100 chrXV:881564-882599 9.26e-01 100 chrX:453666-453766 4.21e-01 100 chrXIII:554800-558596 1.50e-01 100 chrX:380564-380664 5.21e-02 100 chrVII:970768-973692 6.44e-01 100 chrIV:1239304-1239822 1.88e-01 100 chrVI:157900-158248 9.89e-01 100 chrVII:411889-412589 8.88e-01 100 chrIII:77911-78855 9.53e-02 100 chrXIII:296803-298939 7.11e-01 100 chrVII:794154-794515 9.97e-01 100 chrVII:848688-849600 9.19e-01 100 chrX:517631-517731 4.90e-05 31_[+1(2.07e-07)]_44 chrIV:216560-218081 9.12e-01 100 chrXIV:108422-109244 3.44e-01 100 chrX:390834-390934 6.91e-01 100 chrXI:219609-220158 2.52e-07 68_[+3(2.50e-11)]_8 chrXIV:374664-375111 5.01e-08 38_[+3(5.74e-11)]_38 chrII:413225-415808 7.17e-01 100 chrXVI:860146-860739 3.79e-06 23_[-1(3.63e-10)]_52 chrXIV:65342-66796 7.31e-01 100 chrXI:307932-308701 5.07e-01 100 chrXV:340035-340569 2.85e-04 55_[+1(3.13e-08)]_20 chrVII:882427-884347 5.44e-01 100 chrX:540728-540828 4.93e-01 100 chrXVI:879273-880553 1.66e-01 100 chrIII:57383-59866 1.98e-01 100 chrIX:183167-183681 5.87e-07 74_[+1(2.96e-11)]_1 chrXV:961108-964318 8.60e-01 100 chrXI:261147-261972 1.68e-01 100 chrVII:726436-728031 2.51e-01 100 chrXV:424080-424652 4.82e-01 100 chrV:135220-136111 7.72e-01 100 chrXII:1011671-1013750 9.50e-01 100 chrXI:558651-559840 3.54e-01 100 chrXV:487443-487814 2.48e-01 100 chrIII:214070-214707 7.53e-01 100 chrXIV:442864-444758 9.60e-01 100 chrXIV:632504-632909 5.02e-01 100 chrIII:50742-52280 2.48e-01 100 chrVIII:62377-62918 7.18e-01 100 chrVIII:121926-122689 8.20e-01 100 chrXII:781004-781884 7.25e-01 100 chrXII:374217-374646 2.50e-04 12_[-1(3.13e-08)]_63 chrVII:56332-58848 2.04e-01 100 chrVIII:466980-467294 8.85e-01 100 chrXII:903142-904423 4.61e-01 100 chrX:422720-422820 1.95e-01 100 chrXIII:300849-303766 8.10e-01 100 chrXII:610440-612047 6.91e-01 100 chrVI:137237-137732 1.01e-04 60_[+1(1.06e-08)]_15 chrIX:230909-232903 7.89e-01 100 chrVII:440569-440923 5.88e-06 28_[+1(6.08e-10)]_47 chrVI:210298-211040 6.15e-12 8_[+1(8.73e-09)]_20_[+2(1.89e-10)]_\ 18 chrXV:1035536-1036235 2.23e-02 72_[+1(1.63e-05)]_3 chrXII:513367-517024 9.21e-01 100 chrV:321958-323269 9.99e-01 100 chrXII:930321-932610 3.68e-03 56_[+1(1.69e-05)]_19 chrI:138928-139346 1.34e-01 100 chrVIII:76109-76326 4.88e-01 100 chrXVI:692824-695478 4.37e-02 100 chrXV:464304-464926 1.00e+00 100 chrIX:23480-25300 7.08e-01 100 chrV:469219-469748 8.45e-15 28_[-2(1.38e-11)]_6_[-1(8.82e-10)]_\ 12 chrXV:92693-94628 6.81e-01 100 chrII:45032-46370 8.30e-01 100 chrXIV:631524-631989 9.87e-01 100 chrV:434399-435138 2.96e-01 100 chrX:607768-607868 9.81e-01 100 chrXVI:579756-581246 5.25e-01 100 chrXV:677312-679193 7.57e-01 100 chrXII:252999-255245 4.90e-01 100 chrXII:368068-371467 2.02e-01 100 chrIV:330808-332938 2.49e-01 100 chrXVI:241510-242923 5.87e-01 100 chrIV:600556-602355 8.55e-01 100 chrIII:137307-139010 8.94e-02 44_[-2(9.17e-05)]_27 chrXV:571710-572327 3.48e-04 27_[-1(5.57e-08)]_48 chrXI:379446-379912 1.65e-07 55_[-2(1.38e-11)]_16 chrV:550925-551560 3.17e-01 100 chrXVI:677907-679427 2.02e-02 100 chrX:531518-531618 9.18e-01 100 chrXIV:216114-216988 8.62e-01 100 chrXV:638961-639373 6.66e-01 100 chrXII:92424-92855 5.70e-08 27_[-1(4.10e-11)]_48 chrII:144961-145481 3.07e-01 100 chrVII:533770-535158 9.37e-01 100 chrXIV:87372-90279 9.99e-01 100 chrII:299486-300277 3.97e-01 100 chrVII:930686-931143 8.48e-01 100 chrXV:493413-494865 4.76e-01 100 chrVI:95406-95953 2.74e-01 100 chrXIV:575098-577564 3.22e-01 100 chrX:538524-538624 6.87e-01 100 chrII:81496-83346 9.34e-01 100 chrV:335464-336939 1.07e-01 100 chrV:354809-355464 4.15e-01 100 chrXIII:120663-121045 8.20e-01 100 chrXI:333906-335005 2.92e-01 100 chrXIII:290574-291144 3.61e-06 29_[-1(3.18e-10)]_46 chrXIV:415174-416251 4.15e-01 100 chrXI:84016-84425 1.93e-10 42_[-2(4.31e-14)]_29 chrVII:205339-205769 9.19e-08 21_[-2(6.03e-12)]_50 chrIV:118424-118732 9.93e-01 100 chrIX:427464-427771 2.95e-01 100 chrXVI:55889-56340 2.80e-01 100 chrVII:148088-149450 4.96e-01 100 chrXIV:251979-252451 2.04e-01 100 chrXVI:74931-77267 7.68e-01 100 chrVII:405463-405818 6.06e-01 100 chrVII:277085-278726 3.35e-02 25_[-2(2.46e-05)]_46 chrVII:876174-879083 3.44e-01 100 chrXIII:667247-668182 2.48e-02 47_[+2(3.21e-05)]_24 chrXIII:732104-733601 1.95e-01 100 chrXIV:505890-506853 6.72e-01 100 chrXII:919529-923194 5.78e-04 46_[-1(9.47e-05)]_29 chrV:441867-442692 2.55e-01 100 chrX:120238-120338 3.94e-01 100 chrX:702008-702108 6.34e-01 100 chrIX:248515-251072 2.40e-01 100 chrIX:127200-130119 3.35e-01 100 chrX:650844-650944 4.18e-01 100 chrIV:1150509-1151154 3.33e-01 100 chrXVI:302761-304349 9.23e-01 100 chrV:301800-302019 4.08e-01 100 chrXIV:560148-560787 6.63e-01 100 chrXI:107011-110124 5.58e-01 100 chrX:156108-156208 5.12e-01 100 chrX:525932-526032 5.74e-01 100 chrXI:140727-141491 9.97e-01 100 chrIII:176815-179332 3.72e-01 100 chrXIII:549988-553253 4.28e-01 100 chrVIII:470375-471233 1.26e-01 100 chrVII:546689-547916 9.13e-01 100 chrXII:426909-427469 1.31e-04 30_[-1(5.57e-08)]_45 chrXVI:193278-194634 3.37e-01 100 chrVII:557775-557944 5.98e-01 100 chrXIII:768177-768431 9.13e-01 100 chrXVI:794617-796184 7.20e-01 100 chrIII:241344-241994 3.93e-01 100 chrIII:295352-295933 9.59e-01 100 chrIX:380015-382786 6.19e-01 100 chrXV:841516-842925 3.88e-01 100 chrXII:804919-806833 1.18e-01 1_[+2(4.94e-05)]_70 chrVIII:115791-116293 2.22e-01 100 chrXIII:480399-480823 6.25e-06 68_[+1(9.96e-10)]_7 chrXV:594312-594613 7.91e-01 100 chrV:138495-141539 9.96e-01 100 chrXV:109190-111196 9.86e-01 100 chrXIII:572221-573266 9.98e-01 100 chrVI:167261-167659 6.97e-07 32_[-2(1.89e-10)]_39 chrVIII:503931-506170 1.35e-01 100 chrIII:215449-215889 1.50e-01 100 chrX:348780-348880 7.09e-01 100 chrII:373930-376420 4.57e-01 100 chrVII:110297-110773 4.80e-01 100 chrV:281976-284289 8.33e-01 100 chrIV:811973-812713 1.71e-01 100 chrXV:252846-254695 7.30e-01 100 chrVIII:189848-191603 4.34e-01 100 chrX:89588-89688 9.41e-01 100 chrX:227716-227816 3.80e-01 100 chrXIII:914916-915579 8.46e-01 100 chrXVI:559987-560462 5.88e-06 32_[+1(6.08e-10)]_43 chrXII:783785-784742 1.96e-01 100 chrIV:1449788-1451109 9.13e-01 100 chrXII:1001998-1002888 9.60e-01 100 chrXV:168012-168467 5.45e-01 100 chrIX:255004-255852 2.44e-03 31_[+2(1.51e-05)]_40 chrIV:992699-993311 7.23e-01 100 chrIV:309783-310429 2.32e-01 100 chrII:255082-258015 9.62e-02 100 chrIV:589808-591269 9.33e-01 100 chrVII:344253-345116 9.95e-01 100 chrXVI:649097-649584 6.62e-01 100 chrIII:162532-164272 3.03e-01 100 chrXII:108266-108999 4.13e-01 100 chrXII:445564-447523 7.14e-01 100 chrX:204518-204618 2.61e-04 7_[-1(5.57e-08)]_68 chrIX:370252-370583 9.30e-06 56_[+3(5.88e-09)]_20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************