******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MIG2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:301126-301867 1.0000 100 chrVIII:126522-127803 1.0000 100 chrXIV:776558-777387 1.0000 100 chrVII:121986-122529 1.0000 100 chrXI:258495-259990 1.0000 100 chrI:190215-191045 1.0000 100 chrIV:1466564-1468422 1.0000 100 chrXVI:819319-821151 1.0000 100 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1.0000 100 chrV:438329-438966 1.0000 100 chrV:77578-79986 1.0000 100 chrIV:802595-802835 1.0000 100 chrIV:929286-930163 1.0000 100 chrVII:168396-169097 1.0000 100 chrXIII:388342-388582 1.0000 100 chrXII:713144-713597 1.0000 100 chrXV:113451-113878 1.0000 100 chrXII:370516-371565 1.0000 100 chrXIII:251850-252689 1.0000 100 chrVII:479141-482757 1.0000 100 chrXV:945907-949146 1.0000 100 chrVI:31664-32242 1.0000 100 chrVIII:74990-76549 1.0000 100 chrV:141036-141420 1.0000 100 chrVII:823361-823696 1.0000 100 chrXII:214702-215059 1.0000 100 chrXIV:282954-283456 1.0000 100 chrXII:780318-781862 1.0000 100 chrX:424289-424389 1.0000 100 chrXIII:498769-500773 1.0000 100 chrVI:221789-222022 1.0000 100 chrXIII:837716-838242 1.0000 100 chrXV:968099-968464 1.0000 100 chrIX:210684-210967 1.0000 100 chrII:332340-332708 1.0000 100 chrIV:117153-118212 1.0000 100 chrIV:1305102-1305800 1.0000 100 chrXIV:302633-303950 1.0000 100 chrXIII:320985-321430 1.0000 100 chrVII:413348-413665 1.0000 100 chrXV:424161-424683 1.0000 100 chrVII:185458-185922 1.0000 100 chrX:703279-703379 1.0000 100 chrIII:308675-308950 1.0000 100 chrIV:386440-387509 1.0000 100 chrXIII:540300-541376 1.0000 100 chrVI:162047-162389 1.0000 100 chrII:347411-347939 1.0000 100 chrXII:930589-931647 1.0000 100 chrVIII:296719-297220 1.0000 100 chrXI:322421-322746 1.0000 100 chrVIII:504254-504645 1.0000 100 chrIII:262700-263193 1.0000 100 chrXIV:501576-502746 1.0000 100 chrX:355206-355306 1.0000 100 chrIX:197363-198072 1.0000 100 chrVII:856544-857646 1.0000 100 chrIX:389426-390961 1.0000 100 chrX:374194-374294 1.0000 100 chrV:51794-53050 1.0000 100 chrXII:720607-721345 1.0000 100 chrXIII:368474-370254 1.0000 100 chrIII:168081-168535 1.0000 100 chrXV:493833-494490 1.0000 100 chrIX:68700-69821 1.0000 100 chrXV:287276-288442 1.0000 100 chrXII:440435-441752 1.0000 100 chrVIII:237754-238077 1.0000 100 chrX:58646-58746 1.0000 100 chrX:606234-606334 1.0000 100 chrVII:794133-794503 1.0000 100 chrV:396187-396540 1.0000 100 chrXV:340117-340582 1.0000 100 chrXIV:413597-416268 1.0000 100 chrIX:255103-257117 1.0000 100 chrXVI:404501-406542 1.0000 100 chrIV:434039-435083 1.0000 100 chrXI:630485-630909 1.0000 100 chrXVI:406722-407935 1.0000 100 chrVII:343668-345109 1.0000 100 chrIV:1016960-1017520 1.0000 100 chrIV:340445-341573 1.0000 100 chrII:300073-300264 1.0000 100 chrXV:622103-622369 1.0000 100 chrII:644971-645369 1.0000 100 chrVII:726472-726729 1.0000 100 chrV:550931-551610 1.0000 100 chrXV:571585-572168 1.0000 100 chrXV:110843-111190 1.0000 100 chrXV:83234-83406 1.0000 100 chrXIV:241432-242069 1.0000 100 chrXIII:302847-303106 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MIG2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MIG2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MIG2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MIG2/background): A 0.307 C 0.193 G 0.193 T 0.307 ******************************************************************************** ******************************************************************************** MOTIF HGYAAKCDKRAGRTCCBSGGTTCGAWYCC MEME-1 width = 29 sites = 61 llr = 1125 E-value = 1.9e-195 ******************************************************************************** -------------------------------------------------------------------------------- Motif HGYAAKCDKRAGRTCCBSGGTTCGAWYCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 32177::3147132:21:2::::2a3::1 pos.-specific C 21321271:112:17543::::a::25a6 probability G :5111332542661:2267a:::8:1::: matrix T 426:15:431:::63:3:1:aa:::45:3 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * * ****** * Entropy 1.2 * * ****** * (26.6 bits) 0.9 * ** * * ****** ** 0.7 * ** ** ******** *** 0.5 ***** ***** ** ******** *** 0.2 ******* ***************** *** 0.0 ----------------------------- Multilevel TGTAATCTGGAGGTCCCGGGTTCGATTCC consensus A CC GGATA CA TGTCA A AC T sequence C G AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYAAKCDKRAGRTCCBSGGTTCGAWYCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:860123-860697 + 50 1.30e-11 AATCCAACGT TGCCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrX:396393-396493 - 65 1.30e-11 CCAACGT TGCCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrVII:845302-846055 + 52 1.30e-11 AATCCAACGT TGCCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrX:531504-531604 + 38 1.30e-11 AATCCAACGT TGCCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrIV:83370-83846 + 21 1.30e-11 AATCCAACGT TGCCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrXII:214702-215059 - 64 1.51e-11 GCTTCCCT TGCAAGGAAGAGGTCATCGGTTCGATTCC GGTTGCGTCC chrXIV:374723-375090 + 64 2.02e-11 ACTTCGGTCA AGTCATCTGGAGGTCCTGTGTTCGATCCA CAGAGTTC chrX:374194-374294 - 30 4.08e-11 GCGTCTGACT TCTAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrII:405664-406203 + 27 4.08e-11 GCGTCTGACT TCTAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrIV:568525-569355 + 24 4.08e-11 GCGTCTGACT TCTAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrXIII:131598-132112 - 31 4.08e-11 GCGTCTGACT TCTAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrIX:325548-326096 + 9 5.35e-11 GCCACACT AGTAATGTGGAGATCATCGGTTCAAATCC GATTGGAAGC chrXIV:104611-105110 + 28 5.35e-11 GCGCCACACT AGTAATGTGGAGATCATCGGTTCAAATCC GATTGGAAGC chrXVI:581854-582404 + 16 6.12e-11 GCGTATGACT CTTAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrIX:299995-300498 - 43 6.12e-11 GCGTATGACT CTTAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrX:414753-414853 + 12 6.12e-11 GCGTATGACT CTTAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrVI:226432-226979 - 44 6.12e-11 GCGTATGACT CTTAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrVII:823361-823696 + 38 1.03e-10 GCATCTGCTT AACACGCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrVII:738806-739489 + 59 1.03e-10 GCACCGTGCT AATAACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrXIII:372191-372751 - 35 1.03e-10 GCATCTGCTT AACACGCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrVII:412119-412581 - 5 1.03e-10 GCATCTGCTT AACACGCAGAACGTCCCCAGTTCGATCCT GGGC chrXI:379454-379931 + 72 1.03e-10 GCATCTGCTT AACACGCAGAACGTCCCCAGTTCGATCCT chrXIII:420313-420844 - 71 1.03e-10 T AACACGCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrIII:168081-168535 - 54 1.33e-10 CACTTTCGGT TTTGATCCGGACAACCCCGGTTCGAATCC GGGTAGGACC chrXII:448438-448963 - 11 1.33e-10 CACTTTCGGT TTTGATCCGGACAACCCCGGTTCGAATCC GGGTAGGACC chrVIII:134073-134638 + 48 1.33e-10 CACTTTCGGT TTTGATCCGGACAACCCCGGTTCGAATCC GGGTAGGACC chrIV:1175586-1176101 + 69 1.70e-10 GCGTCAGTCT CATAATCTGAAGGTCGAGAGTTCGAACCT CCC chrXIII:572410-573477 - 1 1.70e-10 GCGTCAGTCT CATAATCTGAAGGTCGAGAGTTCGAACCT chrX:422731-422831 + 35 1.70e-10 GCGTCAGTCT CATAATCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrX:390846-390946 - 12 1.70e-10 GCGTCAGTCT CATAATCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrVII:440342-441172 - 20 2.45e-10 ACTTCGGTCA AGTTATCTGGAGGTCCTGTGTTCGATCCA CAGAATTCGC chrXIII:352114-352635 + 7 2.45e-10 CGGTCA AGTTATCTGGAGGTCCTGTGTTCGATCCA CAGAATTCGC chrV:130855-131410 - 11 2.45e-10 CACTTTCGGT TTTGATCCGAACAACCCCGGTTCGAATCC GGGTAAGACC chrIV:1016960-1017520 - 28 3.11e-10 CACATCACGT TCTCACCGTGGAGACCGGGGTTCGACTCC CCGCTTCGGA chrXIII:195937-196289 - 16 3.11e-10 AGGAAGACAA AGCATGCGAGAGGCCCTGGGTTCAATTCC CAGCTCGCCC chrVIII:388701-389196 - 6 3.11e-10 AGGAAGACAA AGCATGCGAGAGGCCCTGGGTTCAATTCC CAGCT chrIX:370262-370593 + 72 3.49e-10 CACATCACGC TTTCACCGTGGAGACCGGGGTTCGACTCC chrX:538528-538628 + 9 4.93e-10 GTCTCCCT CCTAAGGAGAAGACTGCGGGTTCGAGTCC CGTACGGAAC chrIV:884294-884677 + 19 4.93e-10 GGCCTTTAAA AGCAACGCGACCGTCGTGGGTTCAAACCC CACCTCGAGC chrXIII:320985-321430 - 1 9.56e-10 GCGCTCCCTT AGCATGGGAGAGGTCTCCGGTTCGATTCC chrVII:774143-774617 + 52 9.56e-10 GCGCTCCCTT AGCATGGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrIV:1095097-1095702 - 32 2.43e-09 ACTTTGGTCA AGATATCTGGAGGTCCTGTGTTCGATCCA CAGAGTTCGC chrXIII:837716-838242 + 48 5.24e-09 TTTACCACTA CGAAATCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrX:542762-542862 - 13 5.24e-09 TTTATCACTA CGAAATCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrXIII:168753-169004 + 16 5.24e-09 TTTATCACTA CGAAATCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrXV:110843-111190 - 7 1.08e-08 CATCCCACCC TTCCAAGGTGGGGACACGGGTTCGATTCT CGTACC chrXV:340117-340582 - 11 1.95e-08 GCGTCTGGCT ACGAACCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrXI:490762-491322 + 9 1.95e-08 GTCTGGCT ACGAACCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrVII:1004050-1004408 + 69 2.30e-08 GCGTTGCACT TGTAATGCAAAGGTCGTTAGTTCAATTCT GAC chrX:355206-355306 + 65 5.03e-08 AATGGGCGCT TGTCGCGTGCCAGATCGGGGTTCAATTCC CCGTCGC chrX:204526-204626 + 53 5.03e-08 AATGGGCGCT TGTCGCGTGCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrIX:336082-336639 - 50 5.03e-08 AATGGGCGCT TGTCGCGTGCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrXII:426798-427541 + 45 5.03e-08 AATGGGCGCT TGTCGCGTGCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrXIV:632511-632816 + 20 1.37e-07 GCGTGCGACT GTTAATCGCAAGATCGTGAGTTCAACCCT CACTGGGGTC chrII:347411-347939 + 22 1.91e-07 TAAGATCTGT TGGACGGTTGTCCGCGCGAGTTCGAACCT CGCATCCTTC chrII:9468-9863 + 12 1.91e-07 TAAGATCTGT TGGACGGTTGTCCGCGCGAGTTCGAACCT CGCATCCTTC chrIV:519664-519907 + 52 1.91e-07 TAAGATCTGT TGGACGGTTGTCCGCGCGAGTTCGAACCT CGCATCCTTC chrIII:149737-150180 + 44 2.98e-07 GCGCAGGGCT CATAACCCTGATGTCCTCGGATCGAAACC GAGCGGCGCT chrVIII:62622-62971 + 41 3.17e-07 TACACATCGT TGTGGCCGATGAAACCCTGGTTCGATTCT AGGAGATGGC chrXIII:388342-388582 + 13 4.30e-07 GTCCGACAGA AATAAGCTTTACTTTCCGGGTGCGAATCA GCCCGTTGCG chrXIII:225867-226687 - 67 1.24e-06 TTAGA AGCACGCTTGACGGTCTTGGTTCTAACTC TACCCTATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYAAKCDKRAGRTCCBSGGTTCGAWYCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:860123-860697 1.3e-11 49_[+1]_22 chrX:396393-396493 1.3e-11 64_[-1]_7 chrVII:845302-846055 1.3e-11 51_[+1]_20 chrX:531504-531604 1.3e-11 37_[+1]_34 chrIV:83370-83846 1.3e-11 20_[+1]_51 chrXII:214702-215059 1.5e-11 63_[-1]_8 chrXIV:374723-375090 2e-11 63_[+1]_8 chrX:374194-374294 4.1e-11 29_[-1]_42 chrII:405664-406203 4.1e-11 26_[+1]_45 chrIV:568525-569355 4.1e-11 23_[+1]_48 chrXIII:131598-132112 4.1e-11 30_[-1]_41 chrIX:325548-326096 5.4e-11 8_[+1]_63 chrXIV:104611-105110 5.4e-11 27_[+1]_44 chrXVI:581854-582404 6.1e-11 15_[+1]_56 chrIX:299995-300498 6.1e-11 42_[-1]_29 chrX:414753-414853 6.1e-11 11_[+1]_60 chrVI:226432-226979 6.1e-11 43_[-1]_28 chrVII:823361-823696 1e-10 37_[+1]_34 chrVII:738806-739489 1e-10 58_[+1]_13 chrXIII:372191-372751 1e-10 34_[-1]_37 chrVII:412119-412581 1e-10 4_[-1]_67 chrXI:379454-379931 1e-10 71_[+1] chrXIII:420313-420844 1e-10 70_[-1]_1 chrIII:168081-168535 1.3e-10 53_[-1]_18 chrXII:448438-448963 1.3e-10 10_[-1]_61 chrVIII:134073-134638 1.3e-10 47_[+1]_24 chrIV:1175586-1176101 1.7e-10 68_[+1]_3 chrXIII:572410-573477 1.7e-10 [-1]_71 chrX:422731-422831 1.7e-10 34_[+1]_37 chrX:390846-390946 1.7e-10 11_[-1]_60 chrVII:440342-441172 2.5e-10 19_[-1]_52 chrXIII:352114-352635 2.5e-10 6_[+1]_65 chrV:130855-131410 2.5e-10 10_[-1]_61 chrIV:1016960-1017520 3.1e-10 27_[-1]_44 chrXIII:195937-196289 3.1e-10 15_[-1]_56 chrVIII:388701-389196 3.1e-10 5_[-1]_66 chrIX:370262-370593 3.5e-10 71_[+1] chrX:538528-538628 4.9e-10 8_[+1]_63 chrIV:884294-884677 4.9e-10 18_[+1]_53 chrXIII:320985-321430 9.6e-10 [-1]_71 chrVII:774143-774617 9.6e-10 51_[+1]_20 chrIV:1095097-1095702 2.4e-09 31_[-1]_40 chrXIII:837716-838242 5.2e-09 47_[+1]_24 chrX:542762-542862 5.2e-09 12_[-1]_59 chrXIII:168753-169004 5.2e-09 15_[+1]_56 chrXV:110843-111190 1.1e-08 6_[-1]_65 chrXV:340117-340582 2e-08 10_[-1]_61 chrXI:490762-491322 2e-08 8_[+1]_63 chrVII:1004050-1004408 2.3e-08 68_[+1]_3 chrX:355206-355306 5e-08 64_[+1]_7 chrX:204526-204626 5e-08 52_[+1]_19 chrIX:336082-336639 5e-08 49_[-1]_22 chrXII:426798-427541 5e-08 44_[+1]_27 chrXIV:632511-632816 1.4e-07 19_[+1]_52 chrII:347411-347939 1.9e-07 21_[+1]_50 chrII:9468-9863 1.9e-07 11_[+1]_60 chrIV:519664-519907 1.9e-07 51_[+1]_20 chrIII:149737-150180 3e-07 43_[+1]_28 chrVIII:62622-62971 3.2e-07 40_[+1]_31 chrXIII:388342-388582 4.3e-07 12_[+1]_59 chrXIII:225867-226687 1.2e-06 66_[-1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYAAKCDKRAGRTCCBSGGTTCGAWYCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HGYAAKCDKRAGRTCCBSGGTTCGAWYCC width=29 seqs=61 chrXVI:860123-860697 ( 50) TGCCATCGTTGGGCCCCCGGTTCGATTCC 1 chrX:396393-396493 ( 65) TGCCATCGTTGGGCCCCCGGTTCGATTCC 1 chrVII:845302-846055 ( 52) TGCCATCGTTGGGCCCCCGGTTCGATTCC 1 chrX:531504-531604 ( 38) TGCCATCGTTGGGCCCCCGGTTCGATTCC 1 chrIV:83370-83846 ( 21) TGCCATCGTTGGGCCCCCGGTTCGATTCC 1 chrXII:214702-215059 ( 64) TGCAAGGAAGAGGTCATCGGTTCGATTCC 1 chrXIV:374723-375090 ( 64) AGTCATCTGGAGGTCCTGTGTTCGATCCA 1 chrX:374194-374294 ( 30) TCTAATCAGAAGATTATGGGTTCGACCCC 1 chrII:405664-406203 ( 27) TCTAATCAGAAGATTATGGGTTCGACCCC 1 chrIV:568525-569355 ( 24) TCTAATCAGAAGATTATGGGTTCGACCCC 1 chrXIII:131598-132112 ( 31) TCTAATCAGAAGATTATGGGTTCGACCCC 1 chrIX:325548-326096 ( 9) AGTAATGTGGAGATCATCGGTTCAAATCC 1 chrXIV:104611-105110 ( 28) AGTAATGTGGAGATCATCGGTTCAAATCC 1 chrXVI:581854-582404 ( 16) CTTAATCATAAGGTTAGGGGTTCGAGCCC 1 chrIX:299995-300498 ( 43) CTTAATCATAAGGTTAGGGGTTCGAGCCC 1 chrX:414753-414853 ( 12) CTTAATCATAAGGTTAGGGGTTCGAGCCC 1 chrVI:226432-226979 ( 44) CTTAATCATAAGGTTAGGGGTTCGAGCCC 1 chrVII:823361-823696 ( 38) AACACGCAGAACGTCCCCAGTTCGATCCT 1 chrVII:738806-739489 ( 59) AATAACGCGGGGATCAGCGGTTCGATCCC 1 chrXIII:372191-372751 ( 35) AACACGCAGAACGTCCCCAGTTCGATCCT 1 chrVII:412119-412581 ( 5) AACACGCAGAACGTCCCCAGTTCGATCCT 1 chrXI:379454-379931 ( 72) AACACGCAGAACGTCCCCAGTTCGATCCT 1 chrXIII:420313-420844 ( 71) AACACGCAGAACGTCCCCAGTTCGATCCT 1 chrIII:168081-168535 ( 54) TTTGATCCGGACAACCCCGGTTCGAATCC 1 chrXII:448438-448963 ( 11) TTTGATCCGGACAACCCCGGTTCGAATCC 1 chrVIII:134073-134638 ( 48) TTTGATCCGGACAACCCCGGTTCGAATCC 1 chrIV:1175586-1176101 ( 69) CATAATCTGAAGGTCGAGAGTTCGAACCT 1 chrXIII:572410-573477 ( 1) CATAATCTGAAGGTCGAGAGTTCGAACCT 1 chrX:422731-422831 ( 35) CATAATCTGAAGGTCGAGAGTTCGAACCT 1 chrX:390846-390946 ( 12) CATAATCTGAAGGTCGAGAGTTCGAACCT 1 chrVII:440342-441172 ( 20) AGTTATCTGGAGGTCCTGTGTTCGATCCA 1 chrXIII:352114-352635 ( 7) AGTTATCTGGAGGTCCTGTGTTCGATCCA 1 chrV:130855-131410 ( 11) TTTGATCCGAACAACCCCGGTTCGAATCC 1 chrIV:1016960-1017520 ( 28) TCTCACCGTGGAGACCGGGGTTCGACTCC 1 chrXIII:195937-196289 ( 16) AGCATGCGAGAGGCCCTGGGTTCAATTCC 1 chrVIII:388701-389196 ( 6) AGCATGCGAGAGGCCCTGGGTTCAATTCC 1 chrIX:370262-370593 ( 72) TTTCACCGTGGAGACCGGGGTTCGACTCC 1 chrX:538528-538628 ( 9) CCTAAGGAGAAGACTGCGGGTTCGAGTCC 1 chrIV:884294-884677 ( 19) AGCAACGCGACCGTCGTGGGTTCAAACCC 1 chrXIII:320985-321430 ( 1) AGCATGGGAGAGGTCTCCGGTTCGATTCC 1 chrVII:774143-774617 ( 52) AGCATGGGAGAGGTCTCCGGTTCGATTCC 1 chrIV:1095097-1095702 ( 32) AGATATCTGGAGGTCCTGTGTTCGATCCA 1 chrXIII:837716-838242 ( 48) CGAAATCTTGAGATCGGGCGTTCGACTCG 1 chrX:542762-542862 ( 13) CGAAATCTTGAGATCGGGCGTTCGACTCG 1 chrXIII:168753-169004 ( 16) CGAAATCTTGAGATCGGGCGTTCGACTCG 1 chrXV:110843-111190 ( 7) TTCCAAGGTGGGGACACGGGTTCGATTCT 1 chrXV:340117-340582 ( 11) ACGAACCAGAAGATTCCAGGTTCAAGTCC 1 chrXI:490762-491322 ( 9) ACGAACCAGAAGATTCCAGGTTCAAGTCC 1 chrVII:1004050-1004408 ( 69) TGTAATGCAAAGGTCGTTAGTTCAATTCT 1 chrX:355206-355306 ( 65) TGTCGCGTGCCAGATCGGGGTTCAATTCC 1 chrX:204526-204626 ( 53) TGTCGCGTGCCAGATCGGGGTTCAATTCC 1 chrIX:336082-336639 ( 50) TGTCGCGTGCCAGATCGGGGTTCAATTCC 1 chrXII:426798-427541 ( 45) TGTCGCGTGCCAGATCGGGGTTCAATTCC 1 chrXIV:632511-632816 ( 20) GTTAATCGCAAGATCGTGAGTTCAACCCT 1 chrII:347411-347939 ( 22) TGGACGGTTGTCCGCGCGAGTTCGAACCT 1 chrII:9468-9863 ( 12) TGGACGGTTGTCCGCGCGAGTTCGAACCT 1 chrIV:519664-519907 ( 52) TGGACGGTTGTCCGCGCGAGTTCGAACCT 1 chrIII:149737-150180 ( 44) CATAACCCTGATGTCCTCGGATCGAAACC 1 chrVIII:62622-62971 ( 41) TGTGGCCGATGAAACCCTGGTTCGATTCT 1 chrXIII:388342-388582 ( 13) AATAAGCTTTACTTTCCGGGTGCGAATCA 1 chrXIII:225867-226687 ( 67) AGCACGCTTGACGGTCTTGGTTCTAACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYAAKCDKRAGRTCCBSGGTTCGAWYCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 9.41021 E= 1.9e-195 16 14 -355 47 -64 -56 135 -77 -223 61 -123 86 109 14 -123 -264 120 -39 -123 -223 -422 3 44 77 -1257 190 53 -1257 -14 -56 25 23 -142 -355 144 16 36 -156 114 -142 120 -123 -23 -264 -142 35 169 -422 2 -197 169 -422 -64 -56 -156 98 -1257 190 -1257 -14 -53 144 25 -323 -223 109 25 -6 -323 84 157 -264 -42 -197 177 -223 -1257 -1257 237 -1257 -422 -1257 -1257 168 -1257 -1257 -355 168 -1257 237 -1257 -1257 -53 -1257 200 -422 170 -1257 -1257 -1257 -14 -23 -75 53 -422 125 -1257 77 -1257 235 -1257 -422 -191 165 -197 -23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYAAKCDKRAGRTCCBSGGTTCGAWYCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 61 E= 1.9e-195 0.344262 0.213115 0.016393 0.426230 0.196721 0.131148 0.491803 0.180328 0.065574 0.295082 0.081967 0.557377 0.655738 0.213115 0.081967 0.049180 0.704918 0.147541 0.081967 0.065574 0.016393 0.196721 0.262295 0.524590 0.000000 0.721311 0.278689 0.000000 0.278689 0.131148 0.229508 0.360656 0.114754 0.016393 0.524590 0.344262 0.393443 0.065574 0.426230 0.114754 0.704918 0.081967 0.163934 0.049180 0.114754 0.245902 0.622951 0.016393 0.311475 0.049180 0.622951 0.016393 0.196721 0.131148 0.065574 0.606557 0.000000 0.721311 0.000000 0.278689 0.213115 0.524590 0.229508 0.032787 0.065574 0.409836 0.229508 0.295082 0.032787 0.344262 0.573770 0.049180 0.229508 0.049180 0.655738 0.065574 0.000000 0.000000 1.000000 0.000000 0.016393 0.000000 0.000000 0.983607 0.000000 0.000000 0.016393 0.983607 0.000000 1.000000 0.000000 0.000000 0.213115 0.000000 0.770492 0.016393 1.000000 0.000000 0.000000 0.000000 0.278689 0.163934 0.114754 0.442623 0.016393 0.459016 0.000000 0.524590 0.000000 0.983607 0.000000 0.016393 0.081967 0.606557 0.049180 0.262295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYAAKCDKRAGRTCCBSGGTTCGAWYCC MEME-1 regular expression -------------------------------------------------------------------------------- [TAC]G[TC][AC]A[TG][CG][TAG][GT][GA]A[GC][GA]T[CT][CGA][CTG][GC][GA]GTTC[GA]A[TA][TC]C[CT] -------------------------------------------------------------------------------- Time 354.61 secs. ******************************************************************************** ******************************************************************************** MOTIF WGSBBNBDTRGYBTAGTGGT MEME-2 width = 20 sites = 77 llr = 997 E-value = 6.3e-110 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGSBBNBDTRGYBTAGTGGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4:111213:4::::a3:::: pos.-specific C 1:43433::::532::11:1 probability G 18523325:6a:31:7:7a3 matrix T 42133343a::536::91:6 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 * * * ** * Entropy 1.2 * *** *** * (18.7 bits) 0.9 * **** ***** 0.7 ** **** ***** 0.5 ** ************* 0.2 ***** ************** 0.0 -------------------- Multilevel AGGCCCTGTGGCCTAGTGGT consensus T CTGGCA A TTC A G sequence GTTGT G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNBDTRGYBTAGTGGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrXII:92424-92723 + 24 1.65e-10 CAAGTTAATA AGGGCGTGTGGTCTAGTGGT ATGATTCTCG chrVIII:388701-389196 - 79 2.26e-10 CA TGGGCGTGTGGTCTAGTGGT ATGATTCTCG chrI:138937-139333 + 66 1.89e-09 TCAATTAGTA CGGGCGTGTGGTCTAGTGGT ATGATTCTCG chrXIV:546514-547678 + 47 1.89e-09 ACGAAATAAT CGGGCGTGTGGTCTAGTGGT ATGATTCTCG chrXII:656850-657219 - 4 6.61e-09 ACAAGAAAAT TGGGCGTGTGGCGTAGTCGG TAG chrVII:774143-774617 + 18 6.61e-09 ATCAATTAAT TGGGCGTGTGGCGTAGTCGG TAGCGCGCTC chrXII:605180-605631 - 59 9.58e-09 CTTTCGAAAA TGCTCGTGTAGCTCAGTGGT TAGAGCTTCG chrX:374194-374294 - 72 1.36e-08 ACAAATAGT AGCTCGCGTGGCGTAATGGC AACGCGTCTG chrXIII:808126-808517 - 28 1.36e-08 CAGAAGAAAA AGGTCCTATAGTGTAGTGGT TATCACTTTC chrXI:162441-162672 - 34 1.36e-08 AACAAATATT AGCTCGCGTGGCGTAATGGC AACGCGTCTG chrXIII:131598-132112 - 73 1.36e-08 AGAAATTT AGCTCGCGTGGCGTAATGGC AACGCGTCTG chrV:249789-250721 + 80 1.61e-08 ACAGTTGTAC TGGTCCTATAGTGTAGTGGT T chrVII:661502-661933 + 81 1.90e-08 GGTAAAAATT TGCCTCCTTAGCTTAGTGGT chrVII:1004050-1004408 + 36 1.90e-08 TTCAAGGGTT TGCCTCCTTAGCTTAGTGGT AGAGCGTTGC chrVI:162047-162389 + 59 2.62e-08 CAAGAAAACA AGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrXIII:320985-321430 - 44 2.62e-08 CAATACAAAT CGGGCGTGTGGCGTAGTCGG TAGCGCGCTC chrXVI:860123-860697 + 18 2.62e-08 GTAAATAACA AGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrVII:845302-846055 + 20 2.62e-08 ATAAATAACA AGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrX:531504-531604 + 6 2.62e-08 TAGTG AGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrX:378147-378247 + 47 5.50e-08 ATAAATTAAT AGGTTTCGTGGTCTAGTCGG TTATGGCATC chrXII:448438-448963 - 53 5.50e-08 CAAGAAGTTC CGGTCCTATAGTGTAGTGGT TATCACTTTC chrXI:379454-379931 + 37 5.50e-08 ACAGATTAAT AGGTTTCGTGGTCTAGTCGG TTATGGCATC chrVIII:134073-134638 + 15 5.50e-08 CAGTAAGTTC CGGTCCTATAGTGTAGTGGT TATCACTTTC chrXV:110843-111190 - 49 6.33e-08 ACAATTAACC CGGGCGGTTAGTGTAGTGGT TATCATCCCA chrVII:823361-823696 + 3 6.33e-08 AG TGGTTTCGTGGTCTAGTCGG TTATGGCATC chrXIII:372191-372751 - 79 6.33e-08 CC TGGTTTCGTGGTCTAGTCGG TTATGGCATC chrXIII:586511-586890 - 41 6.33e-08 CAACTTACTA TGGTTTCGTGGTCTAGTCGG TTATGGCATC chrVII:412119-412581 - 49 6.33e-08 ATCAAAAAAC TGGTTTCGTGGTCTAGTCGG TTATGGCATC chrX:424289-424389 - 42 7.26e-08 TTAAATAAGA TGGAGGGTTGGCCGAGTGGT CTAAGGCGGC chrXI:84026-84428 + 30 7.26e-08 AAAATTTGTA TGGAGGGTTGGCCGAGTGGT CTAAGGCGGC chrIII:227737-228217 + 14 8.31e-08 CAAATCGAAA TGGCACTATGGCCGAGTGGT TAAGGCGAGA chrXVI:572004-572514 + 59 9.48e-08 CACAATACTT CGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrV:130855-131410 - 53 9.48e-08 AATAATTAAG AGGTTTTATAGTGTAGTGGT TATCACTTTC chrIV:437568-438051 + 12 1.23e-07 ATCATTAGTA AGGCAACTTGGCCGAGTGGT TAAGGCGAAA chrIV:1150675-1151158 - 57 1.23e-07 AAAGTGTTTC AGTCCCAGTGGCCGAGTGGT TAAGGCGATG chrXII:167764-168331 - 10 1.39e-07 AATAGTCATA TGGCAACTTGGCCGAGTGGT TAAGGCGAA chrXIII:259045-259463 - 17 1.39e-07 CAAGTTAGTA TGGCAACTTGGCCGAGTGGT TAAGGCGAAA chrII:197173-197820 + 47 1.78e-07 CCAGTAATCA AGGTCTCTTGGCCCAGTTGG TTAAGGCACC chrVII:738806-739489 + 24 1.78e-07 CGAAAAAAAT AGGTCTCTTGGCCCAGTTGG TTAAGGCACC chrVII:422895-423339 + 24 2.00e-07 AACAGATAAG TGGTTGTTTGGCCGAGCGGT CTAAGGCGCC chrXIII:504624-505225 + 20 2.00e-07 AACAGATAAG TGGTTGTTTGGCCGAGCGGT CTAAGGCGCC chrIV:519664-519907 + 7 2.00e-07 ATTTTA CGGAGGGTTGGCCGAGTGGT CTAAGGCGGC chrIII:123491-123800 - 35 2.25e-07 TTTTCAAAGG AGGGCGTGTGGTCTAGAGGT ATGATTCTCG chrII:350602-351043 + 54 5.97e-07 ATCAATAAAA GGGTTTTATAGTGTAGTGGT TATCACTTTC chrVII:878591-879101 - 1 1.07e-06 TATTTCAAGA TGAAGCGGTGGCTCAATGGT chrXI:302698-303225 + 6 1.07e-06 CAAGA TGAAGCGGTGGCTCAATGGT AGAGCTTTCG chrX:415722-415822 - 69 1.07e-06 CAACAAAAGT TGAAGCGGTGGCTCAATGGT AGAGCTTTCG chrVII:287240-287661 - 37 1.07e-06 TATTTCAAGA TGAAGCGGTGGCTCAATGGT AGAGCTTTCG chrVII:121986-122529 + 61 1.07e-06 CCAACGAATT AGCCTTGTTGGCGCAATCGG TAGCGCGTAT chrXIV:374723-375090 + 12 1.17e-06 CAGAAAAATA AGCGGACTTAGCTCAGTTGG GAGAGCGCCA chrVIII:237754-238077 - 56 1.53e-06 ACAAATAGTA AGCGGATTTAGCTCAGTTGG GAGAGCGCCA chrVIII:358280-358809 - 57 1.53e-06 ACAAATAGTA AGCGGATTTAGCTCAGTTGG GAGAGCGCCA chrX:204526-204626 + 20 1.82e-06 CAACATAAAA ATCCGTGATAGTTTAATGGT CAGAATGGGC chrXII:426798-427541 + 12 1.82e-06 AGTGTTTCTT ATCCGTGATAGTTTAATGGT CAGAATGGGC chrX:355206-355306 + 32 1.98e-06 GCTTTGTTTC TTCCGTGATAGTTTAATGGT CAGAATGGGC chrII:405664-406203 + 76 1.98e-06 GCTTTGTTTC TTCCGTGATAGTTTAATGGT CAGAA chrVII:544407-544913 - 20 1.98e-06 CAGATATTTC TTCCGTGATAGTTTAATGGT CAGAATGGGC chrIV:568525-569355 + 73 1.98e-06 GCTTTGTTTC TTCCGTGATAGTTTAATGGT CAGAATGG chrX:517657-517757 - 42 1.98e-06 CATAAAAGTT AAGCGCCGTGGCGCAGTGGA AGCGCGCAGG chrIV:1175586-1176101 + 35 3.22e-06 TACAAAACAA AGCTTCAGTAGCTCAGTAGG AAGAGCGTCA chrXIII:572410-573477 - 44 3.22e-06 AATAACAGAC AGCTTCAGTAGCTCAGTAGG AAGAGCGTCA chrVIII:62622-62971 + 8 3.48e-06 AATCATA TGCCATCTTAGTATAGTGGT TAGTACACAT chrX:390846-390946 - 55 3.48e-06 CAAGAAATAG TGCTTCAGTAGCTCAGTAGG AAGAGCGTCA chrIV:1016960-1017520 - 70 4.04e-06 CCAAGGTACA ATCCGATGTAGTGTAACGGC TATCACATCA chrXV:340117-340582 - 54 4.04e-06 CTCAAGATCT GTTCCTCGTGGCCCAATGGT CACGGCGTCT chrII:159842-160201 - 35 4.04e-06 ATAGTCTTGT TTGTTGTTTGGCTGAGCGGC CGGACACACA chrIV:359366-359772 + 57 6.65e-06 CGAAGAACTC ATCCTTGTTAGCTCAGTTGG TAGAGCGTTC chrIII:149737-150180 + 11 6.65e-06 TTGTAATGTT GAGCGCCGTGGCGCAGTGGA AGCGCGCAGG chrIV:1075330-1075749 - 37 7.11e-06 TCCGTAATAT TGTTCCAATAGTGTAGCGGC TATCACGTTG chrII:644971-645369 + 46 8.11e-06 ATAAGTTATT ATCCGATATAGTGTAACGGC TATCACATCA chrIX:370262-370593 + 39 8.11e-06 ATAGATTATA ATCCGATATAGTGTAACGGC TATCACATCA chrX:115801-115901 - 34 8.11e-06 ACCGTTTATA ATCCGATATAGTGTAACGGC TATCACATCA chrXI:74444-74795 + 54 8.11e-06 TATAGCAATT AGACTCCATGGCCAAGTTGG TTAAGGCGTG chrXI:140713-141501 - 14 8.11e-06 ATCCTTTGTA ATCCGATATAGTGTAACGGC TATCACATCA chrIII:127507-127880 + 72 8.65e-06 CAAGATAAAA TGACTCCATGGCCAAGTTGG TTAAGGCGT chrV:305833-307467 - 35 1.25e-05 GTCCAAAAAA GGTTCCTGTAGCATAATGGT TAGCTAGATA chrXII:673498-674535 + 52 1.33e-05 AACTGCTGTC ATAACGCGTGGTGTTGTGGT TTTGCTTAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNBDTRGYBTAGTGGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:92424-92723 1.7e-10 23_[+2]_57 chrVIII:388701-389196 2.3e-10 78_[-2]_2 chrI:138937-139333 1.9e-09 65_[+2]_15 chrXIV:546514-547678 1.9e-09 46_[+2]_34 chrXII:656850-657219 6.6e-09 3_[-2]_77 chrVII:774143-774617 6.6e-09 17_[+2]_63 chrXII:605180-605631 9.6e-09 58_[-2]_22 chrX:374194-374294 1.4e-08 71_[-2]_9 chrXIII:808126-808517 1.4e-08 27_[-2]_53 chrXI:162441-162672 1.4e-08 33_[-2]_47 chrXIII:131598-132112 1.4e-08 72_[-2]_8 chrV:249789-250721 1.6e-08 79_[+2]_1 chrVII:661502-661933 1.9e-08 80_[+2] chrVII:1004050-1004408 1.9e-08 35_[+2]_45 chrVI:162047-162389 2.6e-08 58_[+2]_22 chrXIII:320985-321430 2.6e-08 43_[-2]_37 chrXVI:860123-860697 2.6e-08 17_[+2]_63 chrVII:845302-846055 2.6e-08 19_[+2]_61 chrX:531504-531604 2.6e-08 5_[+2]_75 chrX:378147-378247 5.5e-08 46_[+2]_34 chrXII:448438-448963 5.5e-08 52_[-2]_28 chrXI:379454-379931 5.5e-08 36_[+2]_44 chrVIII:134073-134638 5.5e-08 14_[+2]_66 chrXV:110843-111190 6.3e-08 48_[-2]_32 chrVII:823361-823696 6.3e-08 2_[+2]_78 chrXIII:372191-372751 6.3e-08 78_[-2]_2 chrXIII:586511-586890 6.3e-08 40_[-2]_40 chrVII:412119-412581 6.3e-08 48_[-2]_32 chrX:424289-424389 7.3e-08 41_[-2]_39 chrXI:84026-84428 7.3e-08 29_[+2]_51 chrIII:227737-228217 8.3e-08 13_[+2]_67 chrXVI:572004-572514 9.5e-08 58_[+2]_22 chrV:130855-131410 9.5e-08 52_[-2]_28 chrIV:437568-438051 1.2e-07 11_[+2]_69 chrIV:1150675-1151158 1.2e-07 56_[-2]_24 chrXII:167764-168331 1.4e-07 9_[-2]_71 chrXIII:259045-259463 1.4e-07 16_[-2]_64 chrII:197173-197820 1.8e-07 46_[+2]_34 chrVII:738806-739489 1.8e-07 23_[+2]_57 chrVII:422895-423339 2e-07 23_[+2]_57 chrXIII:504624-505225 2e-07 19_[+2]_61 chrIV:519664-519907 2e-07 6_[+2]_74 chrIII:123491-123800 2.2e-07 34_[-2]_46 chrII:350602-351043 6e-07 53_[+2]_27 chrVII:878591-879101 1.1e-06 [-2]_80 chrXI:302698-303225 1.1e-06 5_[+2]_75 chrX:415722-415822 1.1e-06 68_[-2]_12 chrVII:287240-287661 1.1e-06 36_[-2]_44 chrVII:121986-122529 1.1e-06 60_[+2]_20 chrXIV:374723-375090 1.2e-06 11_[+2]_69 chrVIII:237754-238077 1.5e-06 55_[-2]_25 chrVIII:358280-358809 1.5e-06 56_[-2]_24 chrX:204526-204626 1.8e-06 19_[+2]_61 chrXII:426798-427541 1.8e-06 11_[+2]_69 chrX:355206-355306 2e-06 31_[+2]_49 chrII:405664-406203 2e-06 75_[+2]_5 chrVII:544407-544913 2e-06 19_[-2]_61 chrIV:568525-569355 2e-06 72_[+2]_8 chrX:517657-517757 2e-06 41_[-2]_39 chrIV:1175586-1176101 3.2e-06 34_[+2]_46 chrXIII:572410-573477 3.2e-06 43_[-2]_37 chrVIII:62622-62971 3.5e-06 7_[+2]_73 chrX:390846-390946 3.5e-06 54_[-2]_26 chrIV:1016960-1017520 4e-06 69_[-2]_11 chrXV:340117-340582 4e-06 53_[-2]_27 chrII:159842-160201 4e-06 34_[-2]_46 chrIV:359366-359772 6.6e-06 56_[+2]_24 chrIII:149737-150180 6.6e-06 10_[+2]_70 chrIV:1075330-1075749 7.1e-06 36_[-2]_44 chrII:644971-645369 8.1e-06 45_[+2]_35 chrIX:370262-370593 8.1e-06 38_[+2]_42 chrX:115801-115901 8.1e-06 33_[-2]_47 chrXI:74444-74795 8.1e-06 53_[+2]_27 chrXI:140713-141501 8.1e-06 13_[-2]_67 chrIII:127507-127880 8.7e-06 71_[+2]_9 chrV:305833-307467 1.3e-05 34_[-2]_46 chrXII:673498-674535 1.3e-05 51_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNBDTRGYBTAGTGGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGSBBNBDTRGYBTAGTGGT width=20 seqs=77 chrXII:92424-92723 ( 24) AGGGCGTGTGGTCTAGTGGT 1 chrVIII:388701-389196 ( 79) TGGGCGTGTGGTCTAGTGGT 1 chrI:138937-139333 ( 66) CGGGCGTGTGGTCTAGTGGT 1 chrXIV:546514-547678 ( 47) CGGGCGTGTGGTCTAGTGGT 1 chrXII:656850-657219 ( 4) TGGGCGTGTGGCGTAGTCGG 1 chrVII:774143-774617 ( 18) TGGGCGTGTGGCGTAGTCGG 1 chrXII:605180-605631 ( 59) TGCTCGTGTAGCTCAGTGGT 1 chrX:374194-374294 ( 72) AGCTCGCGTGGCGTAATGGC 1 chrXIII:808126-808517 ( 28) AGGTCCTATAGTGTAGTGGT 1 chrXI:162441-162672 ( 34) AGCTCGCGTGGCGTAATGGC 1 chrXIII:131598-132112 ( 73) AGCTCGCGTGGCGTAATGGC 1 chrV:249789-250721 ( 80) TGGTCCTATAGTGTAGTGGT 1 chrVII:661502-661933 ( 81) TGCCTCCTTAGCTTAGTGGT 1 chrVII:1004050-1004408 ( 36) TGCCTCCTTAGCTTAGTGGT 1 chrVI:162047-162389 ( 59) AGCGCAAGTGGTTTAGTGGT 1 chrXIII:320985-321430 ( 44) CGGGCGTGTGGCGTAGTCGG 1 chrXVI:860123-860697 ( 18) AGCGCAAGTGGTTTAGTGGT 1 chrVII:845302-846055 ( 20) AGCGCAAGTGGTTTAGTGGT 1 chrX:531504-531604 ( 6) AGCGCAAGTGGTTTAGTGGT 1 chrX:378147-378247 ( 47) AGGTTTCGTGGTCTAGTCGG 1 chrXII:448438-448963 ( 53) CGGTCCTATAGTGTAGTGGT 1 chrXI:379454-379931 ( 37) AGGTTTCGTGGTCTAGTCGG 1 chrVIII:134073-134638 ( 15) CGGTCCTATAGTGTAGTGGT 1 chrXV:110843-111190 ( 49) CGGGCGGTTAGTGTAGTGGT 1 chrVII:823361-823696 ( 3) TGGTTTCGTGGTCTAGTCGG 1 chrXIII:372191-372751 ( 79) TGGTTTCGTGGTCTAGTCGG 1 chrXIII:586511-586890 ( 41) TGGTTTCGTGGTCTAGTCGG 1 chrVII:412119-412581 ( 49) TGGTTTCGTGGTCTAGTCGG 1 chrX:424289-424389 ( 42) TGGAGGGTTGGCCGAGTGGT 1 chrXI:84026-84428 ( 30) TGGAGGGTTGGCCGAGTGGT 1 chrIII:227737-228217 ( 14) TGGCACTATGGCCGAGTGGT 1 chrXVI:572004-572514 ( 59) CGCGCAAGTGGTTTAGTGGT 1 chrV:130855-131410 ( 53) AGGTTTTATAGTGTAGTGGT 1 chrIV:437568-438051 ( 12) AGGCAACTTGGCCGAGTGGT 1 chrIV:1150675-1151158 ( 57) AGTCCCAGTGGCCGAGTGGT 1 chrXII:167764-168331 ( 10) TGGCAACTTGGCCGAGTGGT 1 chrXIII:259045-259463 ( 17) TGGCAACTTGGCCGAGTGGT 1 chrII:197173-197820 ( 47) AGGTCTCTTGGCCCAGTTGG 1 chrVII:738806-739489 ( 24) AGGTCTCTTGGCCCAGTTGG 1 chrVII:422895-423339 ( 24) TGGTTGTTTGGCCGAGCGGT 1 chrXIII:504624-505225 ( 20) TGGTTGTTTGGCCGAGCGGT 1 chrIV:519664-519907 ( 7) CGGAGGGTTGGCCGAGTGGT 1 chrIII:123491-123800 ( 35) AGGGCGTGTGGTCTAGAGGT 1 chrII:350602-351043 ( 54) GGGTTTTATAGTGTAGTGGT 1 chrVII:878591-879101 ( 1) TGAAGCGGTGGCTCAATGGT 1 chrXI:302698-303225 ( 6) TGAAGCGGTGGCTCAATGGT 1 chrX:415722-415822 ( 69) TGAAGCGGTGGCTCAATGGT 1 chrVII:287240-287661 ( 37) TGAAGCGGTGGCTCAATGGT 1 chrVII:121986-122529 ( 61) AGCCTTGTTGGCGCAATCGG 1 chrXIV:374723-375090 ( 12) AGCGGACTTAGCTCAGTTGG 1 chrVIII:237754-238077 ( 56) AGCGGATTTAGCTCAGTTGG 1 chrVIII:358280-358809 ( 57) AGCGGATTTAGCTCAGTTGG 1 chrX:204526-204626 ( 20) ATCCGTGATAGTTTAATGGT 1 chrXII:426798-427541 ( 12) ATCCGTGATAGTTTAATGGT 1 chrX:355206-355306 ( 32) TTCCGTGATAGTTTAATGGT 1 chrII:405664-406203 ( 76) TTCCGTGATAGTTTAATGGT 1 chrVII:544407-544913 ( 20) TTCCGTGATAGTTTAATGGT 1 chrIV:568525-569355 ( 73) TTCCGTGATAGTTTAATGGT 1 chrX:517657-517757 ( 42) AAGCGCCGTGGCGCAGTGGA 1 chrIV:1175586-1176101 ( 35) AGCTTCAGTAGCTCAGTAGG 1 chrXIII:572410-573477 ( 44) AGCTTCAGTAGCTCAGTAGG 1 chrVIII:62622-62971 ( 8) TGCCATCTTAGTATAGTGGT 1 chrX:390846-390946 ( 55) TGCTTCAGTAGCTCAGTAGG 1 chrIV:1016960-1017520 ( 70) ATCCGATGTAGTGTAACGGC 1 chrXV:340117-340582 ( 54) GTTCCTCGTGGCCCAATGGT 1 chrII:159842-160201 ( 35) TTGTTGTTTGGCTGAGCGGC 1 chrIV:359366-359772 ( 57) ATCCTTGTTAGCTCAGTTGG 1 chrIII:149737-150180 ( 11) GAGCGCCGTGGCGCAGTGGA 1 chrIV:1075330-1075749 ( 37) TGTTCCAATAGTGTAGCGGC 1 chrII:644971-645369 ( 46) ATCCGATATAGTGTAACGGC 1 chrIX:370262-370593 ( 39) ATCCGATATAGTGTAACGGC 1 chrX:115801-115901 ( 34) ATCCGATATAGTGTAACGGC 1 chrXI:74444-74795 ( 54) AGACTCCATGGCCAAGTTGG 1 chrXI:140713-141501 ( 14) ATCCGATATAGTGTAACGGC 1 chrIII:127507-127880 ( 72) TGACTCCATGGCCAAGTTGG 1 chrV:305833-307467 ( 35) GGTTCCTGTAGCATAATGGT 1 chrXII:673498-674535 ( 52) ATAACGCGTGGTGTTGTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNBDTRGYBTAGTGGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 9.50924 E= 6.3e-110 52 -89 -189 39 -356 -1291 201 -66 -176 106 124 -256 -156 81 20 14 -224 97 63 -24 -56 50 43 -24 -124 69 11 19 -24 -1291 132 -24 -1291 -1291 -1291 170 39 -1291 163 -1291 -1291 -1291 237 -1291 -1291 143 -1291 65 -356 81 63 14 -356 28 -43 96 168 -1291 -1291 -456 -17 -1291 192 -1291 -456 -72 -1291 150 -298 -57 192 -156 -1291 -1291 237 -1291 -356 -57 50 90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNBDTRGYBTAGTGGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 77 E= 6.3e-110 0.441558 0.103896 0.051948 0.402597 0.025974 0.000000 0.779221 0.194805 0.090909 0.402597 0.454545 0.051948 0.103896 0.337662 0.220779 0.337662 0.064935 0.376623 0.298701 0.259740 0.207792 0.272727 0.259740 0.259740 0.129870 0.311688 0.207792 0.350649 0.259740 0.000000 0.480519 0.259740 0.000000 0.000000 0.000000 1.000000 0.402597 0.000000 0.597403 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.519481 0.000000 0.480519 0.025974 0.337662 0.298701 0.337662 0.025974 0.233766 0.142857 0.597403 0.987013 0.000000 0.000000 0.012987 0.272727 0.000000 0.727273 0.000000 0.012987 0.116883 0.000000 0.870130 0.038961 0.129870 0.727273 0.103896 0.000000 0.000000 1.000000 0.000000 0.025974 0.129870 0.272727 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNBDTRGYBTAGTGGT MEME-2 regular expression -------------------------------------------------------------------------------- [AT]G[GC][CTG][CGT][CGTA][TCG][GAT]T[GA]G[CT][CTG][TC]A[GA]TGG[TG] -------------------------------------------------------------------------------- Time 678.50 secs. ******************************************************************************** ******************************************************************************** MOTIF VAAAAAAAAAAAAAR MEME-3 width = 15 sites = 104 llr = 1009 E-value = 7.1e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif VAAAAAAAAAAAAAR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4a98a7778968965 pos.-specific C 4:::::1::1::1:1 probability G 2:1::2112:22:24 matrix T :::2:112::2::2: bits 2.4 2.1 1.9 1.7 * Relative 1.4 * * * Entropy 1.2 ** * ** * (14.0 bits) 0.9 ** * ** ** 0.7 ***** *** ** * 0.5 *************** 0.2 *************** 0.0 --------------- Multilevel AAAAAAAAAAAAAAA consensus C G GG GG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAAAAAAAAAAAAAR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrVII:706905-707186 + 46 8.02e-09 TAATGAGGCC CAAAAAAAAAAAAAG AACATCTTCA chrII:478973-479634 + 19 2.08e-08 TTACTTGAAA CAAAAAAAAAAAAAA TGGAAAAAGC chrXIV:444534-444728 - 70 3.35e-08 GAAAATAACA AAAAAAAAAAAAAAG TCAATTTTCT chrX:58646-58746 + 56 5.88e-08 CAAGAGCGTG AAAAAAAAAAAAAAA AAAAAATTAA chrVI:221789-222022 + 21 1.82e-07 CATCATTTTC GAAAAAAAAAGAAAG TTGGAGCCGG chrV:18234-19230 + 64 1.82e-07 TTTAGATGTT GAAAAAAAAAGAAAG CGTTACAATG chrV:51794-53050 + 63 2.64e-07 AAGTGAAAAG CAAAAAAAAAAAATG ATAAAAATGA chrXIV:413597-416268 - 62 4.23e-07 TTAGGGGTAA CAAAAAAAAATAAAA TCAATAAAAA chrVIII:174911-176079 - 43 5.07e-07 CGAACAAAAT CAAAAACAAAAAAAG TGGTAATGAA chrII:415544-415905 - 86 6.34e-07 . AAAAAAAAAAGGAAA AACTTTATTT chrXIV:569625-570038 + 73 6.34e-07 ATTGCCAATG CAAAAAAAAAGAATG GTCTCTAGCG chrIV:884294-884677 - 59 6.34e-07 ACGCGTGTGA AAAAAAAAGAGAAAG TGCTCGAGGT chrXIV:282954-283456 - 31 7.43e-07 TTTTTTGTAT AAAAAAAAGAGAAAA AGAACACAAT chrIV:411021-411625 + 51 7.43e-07 CACGAAAGAA CAAAAAAAGAAGAAA ACAGAAGGCC chrX:538528-538628 - 54 9.08e-07 ATAAAGAAAC GAAAAAAAAAAAATA ATCAACGTTC chrIX:68220-68488 - 72 1.09e-06 ACACGGAGCA CAAAAAAAGAAAAAC CATACATCTT chrXVI:581854-582404 - 54 1.09e-06 ATAGACCATG CAATAAAAAAGAAAG CCCTGTAGGG chrIV:83370-83846 - 68 1.09e-06 AAACAATGTG GAAAAAGAAAAAAAA TTAAACTTGC chrXV:571585-572168 - 65 1.27e-06 CATATGATTT GAAAAAATAAAAAAA TGTTGCAGCA chrIX:197363-198072 - 5 1.27e-06 AATAGTCCCT AAAAAAAAAAGAATA AAAA chrVI:31080-31470 + 28 1.27e-06 GTGGCGTCCT GAAAAAAAAAGAAAC GTCTCAGAAC chrX:422731-422831 - 75 1.27e-06 GTTTAATTCA CAAAAAAAGAAAATG TGCTCCAGGG chrX:531504-531604 - 83 1.27e-06 TTC CAGAAAAAAAGAAAA GAAACTGCGC chrII:159842-160201 - 10 1.70e-06 CGGACACACA GAAAAAAAACAAAAG GGCTTTCGT chrXV:1003929-1004989 - 72 1.99e-06 GCGAGAACAG AAAAAAAAAATGAAG TAAAATATTG chrVIII:125949-126276 - 86 2.67e-06 . AAAAAAAAAAAACAG TGTAGGTGCA chrXIV:102587-103300 + 67 3.07e-06 TATATTCACA AAAAAGAAAATAAAA GTTAAAAATT chrV:311716-312275 + 41 4.09e-06 TGCGGTCTAA CAAAAACAGAGAAAA ACTTGGTACA chrIX:255103-257117 + 53 4.62e-06 TTTAACACAG AAATAAAAAAGGAAG ATTCAATCTT chrXIII:253389-253598 - 85 4.62e-06 C CAGAAAAAGAAAAGA GTAACCTAGG chrVII:323519-324621 - 28 5.29e-06 CAAAGGGCCT CAATAAAAAAAAAGC GCTGCGCTAC chrXII:592376-592707 + 12 5.29e-06 TAAAGATGGC AAAAAACAAAAAATA ATGAGAGCTA chrVII:648774-649357 + 72 5.29e-06 ATCTTCGGAT AAAAATAAAAAGAAG GCGATGAAAA chrIV:1095097-1095702 + 8 5.29e-06 TCACTGG GAAAAAATAAAAATG CGAACTCTGT chrXVI:821616-822227 - 44 5.96e-06 ACTCCCAAGT CAAAAACAACAAAAG AATGAAAGAA chrXIV:632511-632816 - 60 5.96e-06 AGACTATCTG AAATAAGAAAAAAAA CGACCCCAGT chrIV:1016960-1017520 + 3 6.75e-06 GA AAATAAAAAAGAAAC TCCGAAGCGG chrIV:1156294-1156638 + 40 6.75e-06 GTTGTTCCTC CTAAAAAAAAAAAAG ATTTCCTACC chrXIII:145915-146238 - 3 6.75e-06 TTATTTTATG AAAAAGCAAAAAAGG TA chrXVI:810589-811257 + 37 6.75e-06 GTTCAGAAAT AAATAAATAAAAAAA AATCTAGTAT chrXIII:131598-132112 + 1 6.75e-06 . CAAAAAAGAAGAAAC AAAGCACTCA chrVIII:401069-401341 - 67 6.75e-06 TTTTCATTAG GAGAAAAAAAGGAAA GATGCCCTGT chrXII:875165-876152 + 52 6.75e-06 ACTATGGTAA CAAAATAAAAAAATA GAGGGAGGGG chrIX:394840-395079 + 34 7.60e-06 AACTGAAAGG CAAAAAAGAAAAAGC CTTTTTTTTC chrXII:370516-371565 - 81 8.49e-06 CAAAG CAAAATAAAAGAAAC TTAATACGTT chrXIV:302633-303950 + 70 9.52e-06 ATCATTGAAC CAAAAGAAGAAGAAC CAATTCTTGC chrXII:780318-781862 - 44 9.52e-06 GAGACTGGAA CAAAAAAAACTAAGA ATACTTTCCC chrIV:802595-802835 + 54 9.52e-06 TTGTTAGAGT AAAAATAAAAAGAGG TCCTACCCGG chrXII:673498-674535 + 14 1.06e-05 TTACTTCATA CAATAGAAGAGAAAG AAACAGTCTC chrXI:578760-579392 + 73 1.19e-05 ATGCTAAAGA AAAAAAATGAAAATA AGTTTCAATT chrII:44967-45320 + 30 1.19e-05 TCAAAATTAG GAAAAAGAAATGAAG AACGATGAGC chrIV:541219-541922 + 38 1.33e-05 AGCACAATAA GAATAAGAAAAAAGA AAATCAGCAA chrV:354796-355368 + 63 1.33e-05 TGTCCTTCAG CAAAAGAAAAAGCAG TTGGGCTCCT chrIX:231832-232414 - 2 1.33e-05 CAGGGTTGGA AAGAATAAAAAAAAA A chrXV:464286-464916 - 43 1.48e-05 AGGGCCTTGA AAAAAATAAAAAATA TCTGTTACCC chrX:617715-617815 - 83 1.48e-05 ATA CAAAAAATAATGAGA GCTAAGGGAT chrXIII:352114-352635 - 52 1.48e-05 GAAAACGAAT GAAAAGTAAAAAAAA ATTAATGCGA chrVI:136833-137816 + 54 1.48e-05 CGCGAATTAA AAAAAAATAATAAAC TGGTTCATAG chrXII:732010-732304 - 79 1.48e-05 GAAAAAG CAAAAAATAATGAGA GCTAAGGGAT chrIV:1488538-1490409 - 12 1.63e-05 GAAGGGACCA AAGAAGGAAAAAAAA TATGTTGGAA chrXII:201126-201451 - 83 1.63e-05 GAC AAAAAACAAAAGAGC TAAAAATGGG chrVII:726472-726729 - 11 1.81e-05 CAGTTAATTT CAGAAGGAAAGAAAA TGTATAAGAA chrXIV:715467-716936 + 69 1.99e-05 AACACAGAGT AAGAAAAAGCAAAAG ATTTATCTCT chrXVI:172928-174140 - 68 1.99e-05 TTTTTCTATT CAAAAATGAAAAAAA TGTTAGCAAA chrXII:368659-370286 + 44 2.19e-05 CCTGTGTTTT GAAAAAAAACAACAG TAAAATAGGA chrXV:622103-622369 - 1 2.41e-05 AATAGATAGA CAAAGAAAAAGAAGA chrXII:713144-713597 + 6 2.41e-05 AACGG AAAAAAGAAAAGCAG TTAGTATGTA chrIV:975921-976719 + 48 2.41e-05 GCATTAGCTA AAAAAACAAAAACGG GTACGCTCTT chrXIII:168753-169004 - 60 2.41e-05 TAGGCCTGGA GAAAAAGGGAAAAAA AATATCTCCC chrXII:1028245-1028521 - 1 2.41e-05 ACAAGGAAGA AAGAAGGAAAAAAGG chrX:650593-650693 + 9 2.64e-05 CCCTTTTC AAGTAAATAAAAAAG CTTCCGTTCA chrXI:490762-491322 - 71 2.88e-05 CTCAATAACT GAAAAGATAATAAGA AAATTATAAA chrXIII:296822-298885 - 78 2.88e-05 AATTATAC GAAAATGAGAAAAAA ATCCATTCTT chrXV:384763-384951 - 1 3.15e-05 TACCACGGCG CTGAAAAAAAAAAAA chrXV:1048997-1049470 - 62 3.43e-05 TGGCCCATTG AAAAAAAAGCTGAAA CATTCGTAGC chrVIII:115821-116289 + 24 3.43e-05 TCTCTCGCTG AAAAAATTAAAGAAA AAAAATGTCC chrXIV:301017-302105 + 45 3.75e-05 CTTGCCCTTG AAAAATAAGATAAGA CCTCCGATTA chrXIII:222074-223868 + 1 4.08e-05 . AAGAAAATAAAGATA ATAAAAACGA chrXVI:586621-586942 + 28 4.08e-05 ACTTCTATGA CAATAATAAAAAATA ACCTTTCCAT chrII:332340-332708 - 86 4.43e-05 . GAATAAAAACAAAGC GGGAAACATG chrII:375105-375764 - 84 4.43e-05 GC AAATAAATGAAAATA CGTCTGATTT chrIX:23515-25281 + 60 4.43e-05 AATCCGGTAC CAATAGCAAAAGAGA ATTGTCTGTT chrXIV:493872-495962 - 5 4.43e-05 ATAGTAATTG AAATAAAAAATAATC CTGC chrVII:545078-546071 - 11 4.43e-05 TCATTGAATG AAAGAAAAAAGGATG CATGGAAATA chrXVI:731940-732282 + 3 4.43e-05 TA CAAAAAAGACAGAAC TTAATGAAAT chrVI:226432-226979 + 21 4.43e-05 TTGTTAGAGA AAAAAAGAGATAAGC CCTGTAGGGG chrXV:300306-302177 - 7 4.80e-05 GAATACTTTT CAATAGTAAAAAAGG GGGCGA chrII:9468-9863 - 47 4.80e-05 TAAATCATCA AAAAAAATACTGAAG GATGCGAGGT chrVI:224296-225353 - 2 4.80e-05 ACACACACGG ATAAAGAAAAAGAAA T chrXVI:689387-689873 - 64 5.19e-05 AAAATAATTT CAAAAAATAATACGA CACCAGCAGG chrII:88923-89489 - 39 5.60e-05 AAGCATATTT CAAGATAAGAAAAAA ATTCCGCAAC chrX:651907-652007 + 35 6.03e-05 TCTAACCGTT AAGAAGCTAAAAAAA GTGAAAGATT chrXIV:576711-577628 + 74 6.49e-05 AAATAAGTCT CAATAAAAGAAACTA GTTTCCGAAC chrXIII:306123-307201 - 74 6.49e-05 TTCACCACAC GAAAAGATGCGAAAG CACACCAAGC chrX:354169-354269 - 68 6.98e-05 TATAATCCTG CAAAATGGAAAGAAA TTATTAATTA chrX:606234-606334 - 67 8.04e-05 TTAGTTACAG GAAAAGGTAAAGATA CGATAAGAAA chrXII:214702-215059 + 23 8.04e-05 AAATTGTTAA AAATAAAGGAGAATA AAAGTAAAAA chrVII:930430-931142 + 33 8.60e-05 CCGGAAGAAC CAATAGATAATAATG ACGATAGCGC chrXV:832321-832824 - 31 9.21e-05 CCTAAGAATA AAATAGTAAAGGAAG CTATTGCTAC chrIV:322215-323590 + 28 9.21e-05 TTTCCAGAAA GAGAAACGAAGAAGA AGACGCCAAG chrVII:779383-779695 + 56 1.19e-04 GGATAAAATG GAAAGAATGAAAAGG AATTGTAACA chrIV:1075330-1075749 + 85 1.42e-04 TAGGATTCAT AAAGAACTAATAAAG G chrXV:281759-283057 - 25 1.59e-04 CAGTATCAGG ATATAAAAACGAAAA GGAATTCATA chrXII:48760-49202 + 37 1.59e-04 TTACAATGGA GAAGATAAGATAAAG TTAGCGGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAAAAAAAAAAAAAR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:706905-707186 8e-09 45_[+3]_40 chrII:478973-479634 2.1e-08 18_[+3]_67 chrXIV:444534-444728 3.4e-08 69_[-3]_16 chrX:58646-58746 5.9e-08 55_[+3]_30 chrVI:221789-222022 1.8e-07 20_[+3]_65 chrV:18234-19230 1.8e-07 63_[+3]_22 chrV:51794-53050 2.6e-07 62_[+3]_23 chrXIV:413597-416268 4.2e-07 61_[-3]_24 chrVIII:174911-176079 5.1e-07 42_[-3]_43 chrII:415544-415905 6.3e-07 85_[-3] chrXIV:569625-570038 6.3e-07 72_[+3]_13 chrIV:884294-884677 6.3e-07 58_[-3]_27 chrXIV:282954-283456 7.4e-07 30_[-3]_55 chrIV:411021-411625 7.4e-07 50_[+3]_35 chrX:538528-538628 9.1e-07 53_[-3]_32 chrIX:68220-68488 1.1e-06 71_[-3]_14 chrXVI:581854-582404 1.1e-06 53_[-3]_32 chrIV:83370-83846 1.1e-06 67_[-3]_18 chrXV:571585-572168 1.3e-06 64_[-3]_21 chrIX:197363-198072 1.3e-06 4_[-3]_81 chrVI:31080-31470 1.3e-06 27_[+3]_58 chrX:422731-422831 1.3e-06 74_[-3]_11 chrX:531504-531604 1.3e-06 82_[-3]_3 chrII:159842-160201 1.7e-06 9_[-3]_76 chrXV:1003929-1004989 2e-06 71_[-3]_14 chrVIII:125949-126276 2.7e-06 85_[-3] chrXIV:102587-103300 3.1e-06 66_[+3]_19 chrV:311716-312275 4.1e-06 40_[+3]_45 chrIX:255103-257117 4.6e-06 52_[+3]_33 chrXIII:253389-253598 4.6e-06 84_[-3]_1 chrVII:323519-324621 5.3e-06 27_[-3]_58 chrXII:592376-592707 5.3e-06 11_[+3]_74 chrVII:648774-649357 5.3e-06 71_[+3]_14 chrIV:1095097-1095702 5.3e-06 7_[+3]_78 chrXVI:821616-822227 6e-06 43_[-3]_42 chrXIV:632511-632816 6e-06 59_[-3]_26 chrIV:1016960-1017520 6.8e-06 2_[+3]_83 chrIV:1156294-1156638 6.8e-06 39_[+3]_46 chrXIII:145915-146238 6.8e-06 2_[-3]_83 chrXVI:810589-811257 6.8e-06 36_[+3]_49 chrXIII:131598-132112 6.8e-06 [+3]_85 chrVIII:401069-401341 6.8e-06 66_[-3]_19 chrXII:875165-876152 6.8e-06 51_[+3]_34 chrIX:394840-395079 7.6e-06 33_[+3]_52 chrXII:370516-371565 8.5e-06 80_[-3]_5 chrXIV:302633-303950 9.5e-06 69_[+3]_16 chrXII:780318-781862 9.5e-06 43_[-3]_42 chrIV:802595-802835 9.5e-06 53_[+3]_32 chrXII:673498-674535 1.1e-05 13_[+3]_72 chrXI:578760-579392 1.2e-05 72_[+3]_13 chrII:44967-45320 1.2e-05 29_[+3]_56 chrIV:541219-541922 1.3e-05 37_[+3]_48 chrV:354796-355368 1.3e-05 62_[+3]_23 chrIX:231832-232414 1.3e-05 1_[-3]_84 chrXV:464286-464916 1.5e-05 42_[-3]_43 chrX:617715-617815 1.5e-05 82_[-3]_3 chrXIII:352114-352635 1.5e-05 51_[-3]_34 chrVI:136833-137816 1.5e-05 53_[+3]_32 chrXII:732010-732304 1.5e-05 78_[-3]_7 chrIV:1488538-1490409 1.6e-05 11_[-3]_74 chrXII:201126-201451 1.6e-05 82_[-3]_3 chrVII:726472-726729 1.8e-05 10_[-3]_75 chrXIV:715467-716936 2e-05 68_[+3]_17 chrXVI:172928-174140 2e-05 67_[-3]_18 chrXII:368659-370286 2.2e-05 43_[+3]_42 chrXV:622103-622369 2.4e-05 [-3]_85 chrXII:713144-713597 2.4e-05 5_[+3]_80 chrIV:975921-976719 2.4e-05 47_[+3]_38 chrXIII:168753-169004 2.4e-05 59_[-3]_26 chrXII:1028245-1028521 2.4e-05 [-3]_85 chrX:650593-650693 2.6e-05 8_[+3]_77 chrXI:490762-491322 2.9e-05 70_[-3]_15 chrXIII:296822-298885 2.9e-05 77_[-3]_8 chrXV:384763-384951 3.2e-05 [-3]_85 chrXV:1048997-1049470 3.4e-05 61_[-3]_24 chrVIII:115821-116289 3.4e-05 23_[+3]_62 chrXIV:301017-302105 3.7e-05 44_[+3]_41 chrXIII:222074-223868 4.1e-05 [+3]_85 chrXVI:586621-586942 4.1e-05 27_[+3]_58 chrII:332340-332708 4.4e-05 85_[-3] chrII:375105-375764 4.4e-05 83_[-3]_2 chrIX:23515-25281 4.4e-05 59_[+3]_26 chrXIV:493872-495962 4.4e-05 4_[-3]_81 chrVII:545078-546071 4.4e-05 10_[-3]_75 chrXVI:731940-732282 4.4e-05 2_[+3]_83 chrVI:226432-226979 4.4e-05 20_[+3]_65 chrXV:300306-302177 4.8e-05 6_[-3]_79 chrII:9468-9863 4.8e-05 46_[-3]_39 chrVI:224296-225353 4.8e-05 1_[-3]_84 chrXVI:689387-689873 5.2e-05 63_[-3]_22 chrII:88923-89489 5.6e-05 38_[-3]_47 chrX:651907-652007 6e-05 34_[+3]_51 chrXIV:576711-577628 6.5e-05 73_[+3]_12 chrXIII:306123-307201 6.5e-05 73_[-3]_12 chrX:354169-354269 7e-05 67_[-3]_18 chrX:606234-606334 8e-05 66_[-3]_19 chrXII:214702-215059 8e-05 22_[+3]_63 chrVII:930430-931142 8.6e-05 32_[+3]_53 chrXV:832321-832824 9.2e-05 30_[-3]_55 chrIV:322215-323590 9.2e-05 27_[+3]_58 chrVII:779383-779695 0.00012 55_[+3]_30 chrIV:1075330-1075749 0.00014 84_[+3]_1 chrXV:281759-283057 0.00016 24_[-3]_61 chrXII:48760-49202 0.00016 36_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAAAAAAAAAAAAAR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VAAAAAAAAAAAAAR width=15 seqs=104 chrVII:706905-707186 ( 46) CAAAAAAAAAAAAAG 1 chrII:478973-479634 ( 19) CAAAAAAAAAAAAAA 1 chrXIV:444534-444728 ( 70) AAAAAAAAAAAAAAG 1 chrX:58646-58746 ( 56) AAAAAAAAAAAAAAA 1 chrVI:221789-222022 ( 21) GAAAAAAAAAGAAAG 1 chrV:18234-19230 ( 64) GAAAAAAAAAGAAAG 1 chrV:51794-53050 ( 63) CAAAAAAAAAAAATG 1 chrXIV:413597-416268 ( 62) CAAAAAAAAATAAAA 1 chrVIII:174911-176079 ( 43) CAAAAACAAAAAAAG 1 chrII:415544-415905 ( 86) AAAAAAAAAAGGAAA 1 chrXIV:569625-570038 ( 73) CAAAAAAAAAGAATG 1 chrIV:884294-884677 ( 59) AAAAAAAAGAGAAAG 1 chrXIV:282954-283456 ( 31) AAAAAAAAGAGAAAA 1 chrIV:411021-411625 ( 51) CAAAAAAAGAAGAAA 1 chrX:538528-538628 ( 54) GAAAAAAAAAAAATA 1 chrIX:68220-68488 ( 72) CAAAAAAAGAAAAAC 1 chrXVI:581854-582404 ( 54) CAATAAAAAAGAAAG 1 chrIV:83370-83846 ( 68) GAAAAAGAAAAAAAA 1 chrXV:571585-572168 ( 65) GAAAAAATAAAAAAA 1 chrIX:197363-198072 ( 5) AAAAAAAAAAGAATA 1 chrVI:31080-31470 ( 28) GAAAAAAAAAGAAAC 1 chrX:422731-422831 ( 75) CAAAAAAAGAAAATG 1 chrX:531504-531604 ( 83) CAGAAAAAAAGAAAA 1 chrII:159842-160201 ( 10) GAAAAAAAACAAAAG 1 chrXV:1003929-1004989 ( 72) AAAAAAAAAATGAAG 1 chrVIII:125949-126276 ( 86) AAAAAAAAAAAACAG 1 chrXIV:102587-103300 ( 67) AAAAAGAAAATAAAA 1 chrV:311716-312275 ( 41) CAAAAACAGAGAAAA 1 chrIX:255103-257117 ( 53) AAATAAAAAAGGAAG 1 chrXIII:253389-253598 ( 85) CAGAAAAAGAAAAGA 1 chrVII:323519-324621 ( 28) CAATAAAAAAAAAGC 1 chrXII:592376-592707 ( 12) AAAAAACAAAAAATA 1 chrVII:648774-649357 ( 72) AAAAATAAAAAGAAG 1 chrIV:1095097-1095702 ( 8) GAAAAAATAAAAATG 1 chrXVI:821616-822227 ( 44) CAAAAACAACAAAAG 1 chrXIV:632511-632816 ( 60) AAATAAGAAAAAAAA 1 chrIV:1016960-1017520 ( 3) AAATAAAAAAGAAAC 1 chrIV:1156294-1156638 ( 40) CTAAAAAAAAAAAAG 1 chrXIII:145915-146238 ( 3) AAAAAGCAAAAAAGG 1 chrXVI:810589-811257 ( 37) AAATAAATAAAAAAA 1 chrXIII:131598-132112 ( 1) CAAAAAAGAAGAAAC 1 chrVIII:401069-401341 ( 67) GAGAAAAAAAGGAAA 1 chrXII:875165-876152 ( 52) CAAAATAAAAAAATA 1 chrIX:394840-395079 ( 34) CAAAAAAGAAAAAGC 1 chrXII:370516-371565 ( 81) CAAAATAAAAGAAAC 1 chrXIV:302633-303950 ( 70) CAAAAGAAGAAGAAC 1 chrXII:780318-781862 ( 44) CAAAAAAAACTAAGA 1 chrIV:802595-802835 ( 54) AAAAATAAAAAGAGG 1 chrXII:673498-674535 ( 14) CAATAGAAGAGAAAG 1 chrXI:578760-579392 ( 73) AAAAAAATGAAAATA 1 chrII:44967-45320 ( 30) GAAAAAGAAATGAAG 1 chrIV:541219-541922 ( 38) GAATAAGAAAAAAGA 1 chrV:354796-355368 ( 63) CAAAAGAAAAAGCAG 1 chrIX:231832-232414 ( 2) AAGAATAAAAAAAAA 1 chrXV:464286-464916 ( 43) AAAAAATAAAAAATA 1 chrX:617715-617815 ( 83) CAAAAAATAATGAGA 1 chrXIII:352114-352635 ( 52) GAAAAGTAAAAAAAA 1 chrVI:136833-137816 ( 54) AAAAAAATAATAAAC 1 chrXII:732010-732304 ( 79) CAAAAAATAATGAGA 1 chrIV:1488538-1490409 ( 12) AAGAAGGAAAAAAAA 1 chrXII:201126-201451 ( 83) AAAAAACAAAAGAGC 1 chrVII:726472-726729 ( 11) CAGAAGGAAAGAAAA 1 chrXIV:715467-716936 ( 69) AAGAAAAAGCAAAAG 1 chrXVI:172928-174140 ( 68) CAAAAATGAAAAAAA 1 chrXII:368659-370286 ( 44) GAAAAAAAACAACAG 1 chrXV:622103-622369 ( 1) CAAAGAAAAAGAAGA 1 chrXII:713144-713597 ( 6) AAAAAAGAAAAGCAG 1 chrIV:975921-976719 ( 48) AAAAAACAAAAACGG 1 chrXIII:168753-169004 ( 60) GAAAAAGGGAAAAAA 1 chrXII:1028245-1028521 ( 1) AAGAAGGAAAAAAGG 1 chrX:650593-650693 ( 9) AAGTAAATAAAAAAG 1 chrXI:490762-491322 ( 71) GAAAAGATAATAAGA 1 chrXIII:296822-298885 ( 78) GAAAATGAGAAAAAA 1 chrXV:384763-384951 ( 1) CTGAAAAAAAAAAAA 1 chrXV:1048997-1049470 ( 62) AAAAAAAAGCTGAAA 1 chrVIII:115821-116289 ( 24) AAAAAATTAAAGAAA 1 chrXIV:301017-302105 ( 45) AAAAATAAGATAAGA 1 chrXIII:222074-223868 ( 1) AAGAAAATAAAGATA 1 chrXVI:586621-586942 ( 28) CAATAATAAAAAATA 1 chrII:332340-332708 ( 86) GAATAAAAACAAAGC 1 chrII:375105-375764 ( 84) AAATAAATGAAAATA 1 chrIX:23515-25281 ( 60) CAATAGCAAAAGAGA 1 chrXIV:493872-495962 ( 5) AAATAAAAAATAATC 1 chrVII:545078-546071 ( 11) AAAGAAAAAAGGATG 1 chrXVI:731940-732282 ( 3) CAAAAAAGACAGAAC 1 chrVI:226432-226979 ( 21) AAAAAAGAGATAAGC 1 chrXV:300306-302177 ( 7) CAATAGTAAAAAAGG 1 chrII:9468-9863 ( 47) AAAAAAATACTGAAG 1 chrVI:224296-225353 ( 2) ATAAAGAAAAAGAAA 1 chrXVI:689387-689873 ( 64) CAAAAAATAATACGA 1 chrII:88923-89489 ( 39) CAAGATAAGAAAAAA 1 chrX:651907-652007 ( 35) AAGAAGCTAAAAAAA 1 chrXIV:576711-577628 ( 74) CAATAAAAGAAACTA 1 chrXIII:306123-307201 ( 74) GAAAAGATGCGAAAG 1 chrX:354169-354269 ( 68) CAAAATGGAAAGAAA 1 chrX:606234-606334 ( 67) GAAAAGGTAAAGATA 1 chrXII:214702-215059 ( 23) AAATAAAGGAGAATA 1 chrVII:930430-931142 ( 33) CAATAGATAATAATG 1 chrXV:832321-832824 ( 31) AAATAGTAAAGGAAG 1 chrIV:322215-323590 ( 28) GAGAAACGAAGAAGA 1 chrVII:779383-779695 ( 56) GAAAGAATGAAAAGG 1 chrIV:1075330-1075749 ( 85) AAAGAACTAATAAAG 1 chrXV:281759-283057 ( 25) ATATAAAAACGAAAA 1 chrXII:48760-49202 ( 37) GAAGATAAGATAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAAAAAAAAAAAAAR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 10.1177 E= 7.1e-042 43 96 13 -1334 165 -1334 -1334 -300 151 -1334 -63 -1334 132 -1334 -233 -68 167 -1334 -332 -1334 125 -1334 -16 -168 119 -87 -63 -219 125 -1334 -133 -68 134 -1334 20 -1334 154 -87 -1334 -1334 93 -1334 32 -83 131 -1334 32 -1334 160 -152 -1334 -1334 98 -1334 13 -75 70 -52 92 -1334 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAAAAAAAAAAAAAR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 104 E= 7.1e-042 0.413462 0.375000 0.211538 0.000000 0.961538 0.000000 0.000000 0.038462 0.875000 0.000000 0.125000 0.000000 0.769231 0.000000 0.038462 0.192308 0.980769 0.000000 0.019231 0.000000 0.730769 0.000000 0.173077 0.096154 0.701923 0.105769 0.125000 0.067308 0.730769 0.000000 0.076923 0.192308 0.778846 0.000000 0.221154 0.000000 0.894231 0.105769 0.000000 0.000000 0.586538 0.000000 0.240385 0.173077 0.759615 0.000000 0.240385 0.000000 0.932692 0.067308 0.000000 0.000000 0.605769 0.000000 0.211538 0.182692 0.500000 0.134615 0.365385 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAAAAAAAAAAAAAR MEME-3 regular expression -------------------------------------------------------------------------------- [ACG]AAAAAAA[AG]A[AG][AG]A[AG][AG] -------------------------------------------------------------------------------- Time 988.31 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:301126-301867 8.09e-01 100 chrVIII:126522-127803 3.59e-01 100 chrXIV:776558-777387 2.00e-01 100 chrVII:121986-122529 5.03e-03 60_[+2(1.07e-06)]_20 chrXI:258495-259990 6.76e-01 100 chrI:190215-191045 2.34e-01 100 chrIV:1466564-1468422 1.13e-01 100 chrXVI:819319-821151 7.92e-01 100 chrXIII:551403-551758 4.60e-01 100 chrVII:437118-437942 2.54e-02 100 chrVII:328388-329381 4.81e-01 100 chrXI:333458-334955 8.55e-01 100 chrIV:720575-721637 2.39e-01 100 chrIII:149737-150180 7.14e-06 10_[+2(6.65e-06)]_13_[+1(2.98e-07)]_\ 28 chrXVI:310374-312708 2.47e-01 100 chrIV:1150675-1151158 3.18e-04 56_[-2(1.23e-07)]_24 chrXI:558584-559450 1.62e-01 100 chrIX:388131-389225 3.49e-01 100 chrXIV:518826-519123 2.83e-01 100 chrIV:1075330-1075749 1.04e-03 36_[-2(7.11e-06)]_44 chrXII:400017-403515 3.45e-01 100 chrIX:386515-386947 2.69e-01 100 chrII:255086-255696 4.44e-01 100 chrXI:431930-432919 1.19e-01 100 chrXVI:75152-76690 2.03e-01 100 chrVII:345817-346734 8.55e-02 24_[-1(5.10e-05)]_47 chrXV:631836-632052 3.50e-01 100 chrXII:201126-201451 1.12e-02 82_[-3(1.63e-05)]_3 chrVII:788146-788682 8.63e-01 100 chrXV:758881-759509 7.14e-01 100 chrXIII:161905-164343 2.47e-01 100 chrV:130855-131410 2.11e-10 10_[-1(2.45e-10)]_13_[-2(9.48e-08)]_\ 28 chrXVI:572004-572514 3.19e-04 58_[+2(9.48e-08)]_22 chrII:478973-479634 7.70e-05 18_[+3(2.08e-08)]_67 chrIV:884294-884677 8.80e-10 18_[+1(4.93e-10)]_11_[-3(6.34e-07)]_\ 27 chrXV:594312-594638 9.90e-01 100 chrIV:992684-993217 4.58e-01 100 chrXIII:731584-731812 6.02e-01 100 chrVI:226432-226979 1.20e-08 20_[+3(4.43e-05)]_8_[-1(6.12e-11)]_\ 28 chrXII:732010-732304 3.75e-03 78_[-3(1.48e-05)]_7 chrVIII:134073-134638 6.07e-11 14_[+2(5.50e-08)]_13_[+1(1.33e-10)]_\ 24 chrX:523624-523724 4.27e-03 44_[-1(6.47e-05)]_27 chrVII:287240-287661 3.21e-03 36_[-2(1.07e-06)]_44 chrVIII:388701-389196 8.23e-13 5_[-1(3.11e-10)]_44_[-2(2.26e-10)]_\ 2 chrXII:875165-876152 7.10e-03 51_[+3(6.75e-06)]_34 chrXIII:259045-259463 3.58e-04 16_[-2(1.39e-07)]_64 chrXIV:95993-96456 9.00e-01 100 chrXIV:632511-632816 6.98e-08 19_[+1(1.37e-07)]_11_[-3(5.96e-06)]_\ 26 chrVII:364056-364429 4.78e-01 100 chrXVI:731603-731763 5.29e-01 100 chrXIII:123020-123975 4.43e-01 100 chrIX:174748-175549 8.52e-01 100 chrXV:505039-505459 2.92e-01 100 chrXIII:253389-253598 6.85e-03 84_[-3(4.62e-06)]_1 chrVII:824138-826922 5.12e-01 100 chrXI:618765-619287 4.21e-01 100 chrX:390846-390946 3.22e-09 11_[-1(1.70e-10)]_14_[-2(3.48e-06)]_\ 26 chrVI:210433-210944 2.99e-01 100 chrXVI:214684-215228 9.81e-01 100 chrVI:136833-137816 1.43e-03 27_[+3(2.88e-05)]_11_[+3(1.48e-05)]_\ 32 chrXI:325962-327595 2.13e-01 100 chrXII:837636-839387 5.28e-01 100 chrXII:167764-168331 3.24e-04 9_[-2(1.39e-07)]_71 chrXI:67813-69037 5.65e-01 100 chrV:242022-242563 8.47e-01 100 chrIV:1095097-1095702 5.87e-08 7_[+3(5.29e-06)]_9_[-1(2.43e-09)]_\ 40 chrVII:205316-206071 2.58e-01 100 chrXIII:352114-352635 1.86e-08 6_[+1(2.45e-10)]_16_[-3(1.48e-05)]_\ 34 chrXIII:892902-895189 1.02e-01 100 chrIII:202-1686 2.17e-01 100 chrXII:546164-547584 4.02e-01 100 chrVII:986206-986420 1.42e-02 19_[-1(9.60e-05)]_52 chrXI:140713-141501 2.23e-02 13_[-2(8.11e-06)]_67 chrIII:123491-123800 1.15e-03 34_[-2(2.25e-07)]_46 chrXII:1028245-1028521 5.09e-02 [-3(2.41e-05)]_85 chrIII:142038-142954 6.47e-01 100 chrV:305833-307467 1.87e-02 34_[-2(1.25e-05)]_46 chrXII:426798-427541 3.63e-07 11_[+2(1.82e-06)]_13_[+1(5.03e-08)]_\ 27 chrIV:1277757-1279083 1.45e-01 100 chrXII:242196-243502 1.11e-01 100 chrVII:255169-255665 9.62e-01 100 chrXVI:432559-434136 1.29e-01 100 chrVI:95425-95900 2.04e-01 100 chrXIV:631490-632002 4.70e-01 100 chrVII:774143-774617 4.07e-11 17_[+2(6.61e-09)]_14_[+1(9.56e-10)]_\ 20 chrII:159842-160201 2.25e-05 9_[-3(1.70e-06)]_10_[-2(4.04e-06)]_\ 46 chrII:60909-61181 6.33e-01 100 chrXII:932101-932454 3.66e-01 100 chrXV:882726-884612 2.89e-01 100 chrVIII:34385-36197 9.49e-02 100 chrVII:110371-110776 8.79e-01 100 chrXI:74444-74795 4.25e-03 53_[+2(8.11e-06)]_27 chrXV:979727-981301 9.39e-01 100 chrVII:779383-779695 1.93e-01 100 chrXV:159186-160728 1.25e-01 100 chrVII:706905-707186 1.13e-04 45_[+3(8.02e-09)]_40 chrXVI:208871-210458 9.97e-01 100 chrXII:605180-605631 3.54e-06 58_[-2(9.58e-09)]_22 chrXVI:775659-776127 8.33e-01 100 chrVIII:401069-401341 1.95e-02 66_[-3(6.75e-06)]_19 chrVI:4586-4752 5.40e-01 100 chrXII:198343-199855 4.63e-01 100 chrXVI:585863-586350 5.32e-01 100 chrXIII:91570-92108 8.60e-01 100 chrXII:368659-370286 7.72e-02 43_[+3(2.19e-05)]_42 chrII:680305-682432 3.88e-01 100 chrIV:437568-438051 5.64e-06 11_[+2(1.23e-07)]_23_[+1(6.47e-05)]_\ 17 chrXVI:878793-880567 2.29e-01 100 chrIV:83370-83846 8.47e-11 20_[+1(1.30e-11)]_18_[-3(1.09e-06)]_\ 18 chrXV:92715-94774 7.37e-02 100 chrXIII:168753-169004 2.96e-07 15_[+1(5.24e-09)]_14_[-3(2.19e-05)]_\ 27 chrIX:248615-249438 5.16e-01 100 chrVI:19199-19869 5.32e-01 100 chrVI:224296-225353 1.01e-01 1_[-3(4.80e-05)]_84 chrV:61059-62131 4.62e-01 100 chrXVI:901187-902189 4.47e-01 100 chrXV:487464-487747 8.03e-01 100 chrXII:975794-976095 6.64e-01 100 chrIX:231231-231668 1.25e-01 100 chrXV:407462-408225 4.78e-02 100 chrVII:726985-728315 2.24e-02 100 chrXIII:551942-553126 3.39e-01 100 chrII:477107-477761 1.05e-01 100 chrII:45568-46834 9.50e-01 100 chrV:396742-397984 8.24e-02 100 chrVII:483320-483715 8.03e-02 7_[+1(7.64e-05)]_64 chrXV:976384-978311 2.77e-01 100 chrXIII:732051-733405 2.33e-01 100 chrXV:796952-798938 2.93e-01 100 chrX:538528-538628 3.78e-09 8_[+1(4.93e-10)]_16_[-3(9.08e-07)]_\ 32 chrVII:625076-625798 3.44e-01 100 chrX:415722-415822 3.11e-05 68_[-2(1.07e-06)]_12 chrXII:636708-639965 4.75e-01 100 chrXII:348053-348799 6.75e-01 100 chrXVI:731940-732282 2.72e-02 2_[+3(4.43e-05)]_83 chrXIII:554786-556458 3.81e-01 100 chrXIV:444534-444728 2.40e-04 71_[-3(2.08e-08)]_14 chrIV:1401307-1401901 6.15e-01 100 chrVII:533366-535176 6.13e-01 100 chrXI:517785-518066 9.04e-01 100 chrII:44967-45320 2.03e-02 29_[+3(1.19e-05)]_56 chrV:249789-250721 1.30e-04 79_[+2(1.61e-08)]_1 chrIV:218311-218835 1.83e-01 100 chrXV:619189-621365 3.79e-01 100 chrIV:322215-323590 1.20e-01 27_[+3(9.21e-05)]_58 chrIV:1080433-1081947 7.52e-01 100 chrVII:440342-441172 1.73e-06 19_[-1(2.45e-10)]_52 chrX:542762-542862 9.47e-06 12_[-1(5.24e-09)]_59 chrXI:108730-109036 5.19e-01 100 chrVII:989824-990383 7.54e-01 100 chrXIII:873478-874454 6.38e-01 100 chrVII:930430-931142 2.25e-02 32_[+3(8.60e-05)]_53 chrXIII:463443-463873 6.91e-01 100 chrIV:722363-722836 6.30e-01 100 chrVIII:174911-176079 3.73e-03 42_[-3(5.07e-07)]_12_[+3(8.04e-05)]_\ 16 chrIV:1461342-1461835 8.44e-01 100 chrVII:545078-546071 4.97e-02 10_[-3(4.43e-05)]_75 chrX:115801-115901 2.34e-02 33_[-2(8.11e-06)]_47 chrIV:410205-410448 8.45e-01 100 chrXII:459611-460688 4.92e-02 100 chrVIII:16884-18074 8.76e-01 100 chrXIII:296822-298885 6.97e-02 77_[-3(2.88e-05)]_8 chrIV:355015-356975 4.58e-01 100 chrVII:310381-312649 7.42e-01 100 chrXIII:131598-132112 1.19e-14 [+3(6.75e-06)]_15_[-1(4.08e-11)]_13_\ [-2(1.36e-08)]_8 chrXII:423754-424524 5.08e-01 100 chrXIII:9710-10162 9.54e-02 100 chrVIII:115821-116289 3.06e-02 23_[+3(3.43e-05)]_62 chrX:531504-531604 1.52e-15 5_[+2(2.62e-08)]_12_[+1(1.30e-11)]_\ 14_[-3(1.27e-06)]_5 chrIV:757477-758348 6.99e-01 100 chrX:227688-227788 9.75e-01 100 chrIV:519664-519907 2.13e-07 6_[+2(2.00e-07)]_25_[+1(1.91e-07)]_\ 20 chrXI:364555-365252 4.47e-01 100 chrXIV:87465-89822 5.29e-01 100 chrVIII:103557-105523 2.11e-01 100 chrXIV:569625-570038 1.68e-03 72_[+3(6.34e-07)]_13 chrIV:1491469-1492392 3.86e-01 100 chrXIV:493872-495962 4.30e-02 4_[-3(4.43e-05)]_81 chrIII:127507-127880 2.34e-02 71_[+2(8.65e-06)]_9 chrVI:75212-76419 4.86e-01 100 chrXII:951087-954002 4.60e-01 100 chrXVI:821616-822227 2.70e-02 24_[-3(5.60e-05)]_4_[-3(5.96e-06)]_\ 42 chrV:441817-442653 5.47e-01 100 chrVIII:125949-126276 5.91e-03 85_[-3(2.67e-06)] chrXVI:810589-811257 2.62e-02 36_[+3(6.75e-06)]_49 chrIV:1488538-1490409 5.77e-02 11_[-3(1.63e-05)]_74 chrXI:99116-100009 7.43e-01 100 chrIX:370262-370593 6.95e-09 38_[+2(8.11e-06)]_13_[+1(3.49e-10)] chrV:18234-19230 1.62e-03 63_[+3(1.82e-07)]_22 chrIV:1300873-1301277 3.51e-01 100 chrXII:515335-516943 2.76e-01 100 chrVII:845302-846055 2.23e-12 19_[+2(2.62e-08)]_12_[+1(1.30e-11)]_\ 20 chrXII:818543-819107 6.47e-01 100 chrXII:92424-92723 6.40e-07 23_[+2(1.65e-10)]_57 chrXVI:55844-56343 6.64e-01 100 chrII:350602-351043 2.76e-03 53_[+2(5.97e-07)]_27 chrXIV:783834-784312 4.44e-01 100 chrIV:1236392-1238713 6.77e-01 100 chrIV:1086391-1087268 8.35e-01 100 chrX:381422-381522 7.90e-01 100 chrXV:79754-80110 2.80e-01 100 chrXIII:768175-768432 8.70e-01 100 chrXIII:170378-171293 2.32e-01 100 chrXIV:546514-547678 1.36e-05 46_[+2(1.89e-09)]_34 chrVII:516298-517687 7.85e-01 100 chrXII:48760-49202 1.68e-01 100 chrIV:578989-580791 6.38e-02 100 chrX:354169-354269 1.60e-01 67_[-3(6.98e-05)]_18 chrII:9468-9863 2.49e-05 11_[+1(1.91e-07)]_6_[-3(4.80e-05)]_\ 39 chrIX:395238-395545 3.07e-01 100 chrIV:354365-354658 2.74e-01 100 chrIV:411021-411625 3.07e-03 50_[+3(7.43e-07)]_35 chrXVI:378707-378958 2.38e-01 100 chrXII:374217-374707 5.20e-01 100 chrXV:252824-253600 7.78e-02 20_[-2(9.96e-05)]_60 chrV:42145-42604 3.30e-01 100 chrV:423103-423468 3.50e-01 100 chrXVI:302667-302903 4.09e-01 100 chrV:322039-323282 2.69e-01 100 chrV:435314-435936 2.56e-01 100 chrIV:1507028-1507810 5.40e-01 100 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chrXIII:388342-388582 2.16e-03 12_[+1(4.30e-07)]_59 chrXII:713144-713597 1.31e-02 5_[+3(2.41e-05)]_80 chrXV:113451-113878 5.76e-01 100 chrXII:370516-371565 2.85e-02 80_[-3(8.49e-06)]_5 chrXIII:251850-252689 6.65e-01 100 chrVII:479141-482757 4.44e-01 100 chrXV:945907-949146 7.27e-01 100 chrVI:31664-32242 7.08e-01 100 chrVIII:74990-76549 1.73e-01 100 chrV:141036-141420 5.62e-01 100 chrVII:823361-823696 7.08e-11 2_[+2(6.33e-08)]_15_[+1(1.03e-10)]_\ 34 chrXII:214702-215059 8.96e-09 22_[+3(8.04e-05)]_26_[-1(1.51e-11)]_\ 8 chrXIV:282954-283456 2.52e-03 30_[-3(7.43e-07)]_4_[+3(6.49e-05)]_\ 36 chrXII:780318-781862 4.93e-03 43_[-3(9.52e-06)]_42 chrX:424289-424389 1.91e-04 41_[-2(7.26e-08)]_39 chrXIII:498769-500773 9.20e-01 100 chrVI:221789-222022 8.49e-04 20_[+3(1.82e-07)]_65 chrXIII:837716-838242 1.36e-05 47_[+1(5.24e-09)]_24 chrXV:968099-968464 5.96e-01 100 chrIX:210684-210967 2.35e-01 100 chrII:332340-332708 7.88e-02 85_[-3(4.43e-05)] chrIV:117153-118212 7.59e-02 100 chrIV:1305102-1305800 7.35e-01 100 chrXIV:302633-303950 5.27e-03 69_[+3(9.52e-06)]_16 chrXIII:320985-321430 8.25e-11 [-1(9.56e-10)]_14_[-2(2.62e-08)]_37 chrVII:413348-413665 1.42e-01 100 chrXV:424161-424683 1.77e-01 100 chrVII:185458-185922 1.97e-01 100 chrX:703279-703379 6.39e-01 100 chrIII:308675-308950 6.97e-02 100 chrIV:386440-387509 9.77e-02 100 chrXIII:540300-541376 2.87e-01 100 chrVI:162047-162389 5.48e-05 58_[+2(2.62e-08)]_22 chrII:347411-347939 7.66e-04 21_[+1(1.91e-07)]_50 chrXII:930589-931647 6.17e-01 100 chrVIII:296719-297220 4.43e-01 100 chrXI:322421-322746 3.09e-01 100 chrVIII:504254-504645 3.88e-01 100 chrIII:262700-263193 6.72e-01 100 chrXIV:501576-502746 9.48e-01 100 chrX:355206-355306 1.82e-07 31_[+2(1.98e-06)]_13_[+1(5.03e-08)]_\ 7 chrIX:197363-198072 6.34e-03 4_[-3(1.27e-06)]_81 chrVII:856544-857646 9.09e-01 100 chrIX:389426-390961 8.99e-02 100 chrX:374194-374294 2.42e-12 29_[-1(4.08e-11)]_13_[-2(1.36e-08)]_\ 9 chrV:51794-53050 1.73e-03 40_[+3(1.99e-05)]_7_[+3(2.64e-07)]_\ [+3(6.98e-05)]_8 chrXII:720607-721345 7.15e-01 100 chrXIII:368474-370254 8.60e-01 100 chrIII:168081-168535 6.96e-07 53_[-1(1.33e-10)]_18 chrXV:493833-494490 9.91e-02 100 chrIX:68700-69821 1.76e-01 100 chrXV:287276-288442 2.29e-01 100 chrXII:440435-441752 9.14e-01 100 chrVIII:237754-238077 1.79e-03 55_[-2(1.53e-06)]_25 chrX:58646-58746 3.40e-04 55_[+3(5.88e-08)]_30 chrX:606234-606334 1.97e-02 66_[-3(8.04e-05)]_19 chrVII:794133-794503 8.60e-01 100 chrV:396187-396540 5.57e-01 100 chrXV:340117-340582 2.82e-07 10_[-1(1.95e-08)]_14_[-2(4.04e-06)]_\ 27 chrXIV:413597-416268 2.17e-03 40_[-3(6.98e-05)]_6_[-3(4.23e-07)]_\ 24 chrIX:255103-257117 1.06e-02 52_[+3(4.62e-06)]_33 chrXVI:404501-406542 9.76e-01 100 chrIV:434039-435083 2.25e-01 100 chrXI:630485-630909 1.99e-01 100 chrXVI:406722-407935 6.34e-02 38_[-1(4.93e-05)]_33 chrVII:343668-345109 9.61e-01 100 chrIV:1016960-1017520 1.74e-11 2_[+3(6.75e-06)]_10_[-1(3.11e-10)]_\ 13_[-2(4.04e-06)]_11 chrIV:340445-341573 2.06e-01 100 chrII:300073-300264 9.20e-01 100 chrXV:622103-622369 5.60e-03 [-3(2.41e-05)]_85 chrII:644971-645369 4.58e-03 45_[+2(8.11e-06)]_35 chrVII:726472-726729 3.42e-02 10_[-3(1.81e-05)]_75 chrV:550931-551610 4.01e-01 100 chrXV:571585-572168 4.28e-03 64_[-3(1.27e-06)]_21 chrXV:110843-111190 2.23e-09 6_[-1(1.08e-08)]_13_[-2(6.33e-08)]_\ 32 chrXV:83234-83406 3.06e-01 100 chrXIV:241432-242069 2.70e-01 100 chrXIII:302847-303106 9.29e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************