******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MIG1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:266212-266784 1.0000 100 chrVIII:125914-126270 1.0000 100 chrXV:24305-25225 1.0000 100 chrVI:220262-221545 1.0000 100 chrXI:232239-233422 1.0000 100 chrI:142112-143728 1.0000 100 chrIV:1245668-1246210 1.0000 100 chrXVI:794902-796171 1.0000 100 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100 chrXIII:378904-379622 1.0000 100 chrXV:961007-967789 1.0000 100 chrII:393027-398157 1.0000 100 chrXIII:586400-586895 1.0000 100 chrXVI:718271-719491 1.0000 100 chrIV:1449712-1451390 1.0000 100 chrII:644974-645413 1.0000 100 chrXIV:576698-577509 1.0000 100 chrVIII:126481-127814 1.0000 100 chrXII:712888-713593 1.0000 100 chrXIII:388368-388594 1.0000 100 chrXI:611432-612363 1.0000 100 chrXII:932098-932454 1.0000 100 chrVIII:410971-411928 1.0000 100 chrV:491081-491424 1.0000 100 chrV:298846-301561 1.0000 100 chrIV:220708-222300 1.0000 100 chrVII:611854-616058 1.0000 100 chrXII:449239-450350 1.0000 100 chrXIV:374731-375105 1.0000 100 chrVI:180598-181259 1.0000 100 chrVII:624781-625845 1.0000 100 chrV:51806-53227 1.0000 100 chrXII:734596-734974 1.0000 100 chrXIV:575040-576111 1.0000 100 chrXVI:400435-402669 1.0000 100 chrVII:794228-794505 1.0000 100 chrXV:31361-31889 1.0000 100 chrV:135207-136156 1.0000 100 chrXII:262884-263995 1.0000 100 chrVIII:119699-121676 1.0000 100 chrXV:110836-111192 1.0000 100 chrVII:110099-110781 1.0000 100 chrII:236540-237434 1.0000 100 chrIV:915351-916276 1.0000 100 chrVII:343928-345131 1.0000 100 chrXI:302563-303267 1.0000 100 chrVII:205170-206118 1.0000 100 chrV:305838-307713 1.0000 100 chrXVI:519800-520468 1.0000 100 chrX:73302-73402 1.0000 100 chrII:59473-60445 1.0000 100 chrVIII:381459-382793 1.0000 100 chrIV:667678-668563 1.0000 100 chrX:156169-156269 1.0000 100 chrXV:300760-301745 1.0000 100 chrXVI:689401-689871 1.0000 100 chrXII:282757-284048 1.0000 100 chrXIII:251508-252965 1.0000 100 chrIV:1507057-1507728 1.0000 100 chrII:347412-348067 1.0000 100 chrVIII:451188-453097 1.0000 100 chrIX:370262-370579 1.0000 100 chrXII:426849-427473 1.0000 100 chrXV:216316-216644 1.0000 100 chrXV:968071-968398 1.0000 100 chrII:477108-477774 1.0000 100 chrIX:354724-355528 1.0000 100 chrXV:391563-391943 1.0000 100 chrXIV:656391-661735 1.0000 100 chrXIV:253189-254173 1.0000 100 chrXIV:302610-303931 1.0000 100 chrII:326582-327502 1.0000 100 chrXIV:725348-725534 1.0000 100 chrXII:592378-592712 1.0000 100 chrXIV:413535-417279 1.0000 100 chrXII:366003-366544 1.0000 100 chrIX:254270-254514 1.0000 100 chrIV:308070-310177 1.0000 100 chrIII:176776-178798 1.0000 100 chrIV:1351882-1353099 1.0000 100 chrXVI:153602-154778 1.0000 100 chrII:192868-193913 1.0000 100 chrXV:438434-439422 1.0000 100 chrXV:251389-253657 1.0000 100 chrXII:47623-48526 1.0000 100 chrIV:1301542-1302597 1.0000 100 chrXIII:551411-551725 1.0000 100 chrVII:277091-277299 1.0000 100 chrII:405651-406321 1.0000 100 chrVII:114971-115732 1.0000 100 chrXIV:255280-255779 1.0000 100 chrX:25854-25954 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MIG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MIG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MIG1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--MIG1/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF YGVYCNCDMSSGGRWTCGAACCSVBGACSY MEME-1 width = 30 sites = 62 llr = 1165 E-value = 3.0e-208 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGVYCNCDMSSGGRWTCGAACCSVBGACSY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 113122224113:55:::aa:::2:2511: pos.-specific C 4:44545:544:::2:8:::a7532:2653 probability G :72222242357a41::a::::44581132 matrix T 52142213:2::::2a2::::2113:2225 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * ** * Relative 1.4 * ****** * Entropy 1.2 ** ******* * (27.1 bits) 1.0 * *** ******* * 0.7 * * **** ******** ** * 0.5 ** ******** ******** ** *** 0.2 ***** ******** *************** 0.0 ------------------------------ Multilevel TGCCCCCGCCGGGAATCGAACCCGGGACCT consensus C AT TATAGCA GT T TGCTA TGC sequence G A A AC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVYCNCDMSSGGRWTCGAACCSVBGACSY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:860167-860705 - 34 2.62e-13 AAATAAAATC TGCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrX:531628-531728 - 15 2.62e-13 GAAAAGAAAC TGCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrXV:226419-226869 + 17 2.62e-13 ACAAAAAATT TGCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrIV:83337-83816 - 63 2.62e-13 ATTAAACT TGCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrVII:738805-739508 - 60 4.94e-12 AAAAAGTAAA TGGTCTCTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrXII:1051929-1052198 + 58 4.94e-12 AAAAAAATAA TGGTCTCTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrV:443056-443339 + 55 4.94e-12 AAAAAAAATA TGGTCTCTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrII:197286-197835 - 28 4.94e-12 TGCAAAAAAA TGGTCTCTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrXIII:586400-586895 + 39 1.89e-11 TTCAAAAAAA TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:420321-420858 + 49 1.89e-11 GAGATAAAAA TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrVII:823360-823695 - 49 1.89e-11 CTTCAAAAAA TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrV:438499-438981 - 54 1.89e-11 AAAAAAAAAT TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:372182-372757 + 26 1.89e-11 GCTAAAAAAA TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXI:307867-308440 + 41 1.89e-11 AAAAAAAAAT TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXI:379495-379926 - 64 1.89e-11 AATTAAT TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrV:311722-312283 + 71 2.50e-11 AAGATTTCAT TGGACGCAACCGGAATCGAACCGATGACCT chrXII:214688-215060 + 59 2.50e-11 AAAAAATAAA TGGACGCAACCGGAATCGAACCGATGACCT CTTCCTTGCA chrXIV:96005-96450 + 64 3.29e-11 TCAAAAAATT TGAGCGGTACGAGAATCGAACCCGTGTCCC CACCTTG chrIV:1351882-1353099 + 26 4.93e-11 AAAAAAAGAT AGCCCTGTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrXIII:480359-480903 + 40 4.93e-11 CAAAAAAAGA AGCCCTGTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrX:414707-414807 - 55 4.93e-11 AAAAAATATT AGCCCTGTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrIV:1016956-1017533 + 13 6.41e-11 AAAAAAGAAA CTCCGAAGCGGGGAGTCGAACCCCGGTCTC CACGGTGAGA chrIV:1175595-1176113 - 68 8.29e-11 AAA TGCTCCAGGGGAGGTTCGAACTCTCGACCT TCAGATTATG chrXIII:572569-573170 + 64 8.29e-11 AAAAAAAATG TGCTCCAGGGGAGGTTCGAACTCTCGACCT TCAGATT chrIV:884292-884613 - 62 1.74e-10 AAGAGAAAG TGCTCGAGGTGGGGTTTGAACCCACGACGG TCGCGTTGCT chrXI:578780-579333 - 25 3.94e-10 AAGTAAAGAA CTCCTCATAGGGGGCTCGAACCCCTGACAT TTCGGTATCC chrIII:168070-168532 + 50 3.94e-10 ATTCAAAAAA AGGTCCTACCCGGATTCGAACCGGGGTTGT CCGGATCAAA chrV:249797-250878 - 41 3.94e-10 TGAATAAAAA AGGTCCTACCCGGATTCGAACCGGGGTTGT CCGGATCAAA chrXVI:768945-769458 + 56 3.94e-10 AAGTAAAGAA CTCCTCATAGGGGGCTCGAACCCCTGACAT TTCGGTATCC chrX:538526-538626 - 17 4.93e-10 AAATAATCAA CGTTCCGTACGGGACTCGAACCCGCAGTCT TCTCCTTAGG chrII:644974-645413 - 66 6.84e-10 AATAA CTCCGATACGGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrVIII:388679-389205 + 1 6.84e-10 . GGGGCGAGCTGGGAATTGAACCCAGGGCCT CTCGCATGCT chrXIII:195938-196291 + 4 6.84e-10 AAA GGGGCGAGCTGGGAATTGAACCCAGGGCCT CTCGCATGCT chrV:176887-177447 - 24 6.84e-10 CAAAAAAGTA CTCCGATACGGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrV:130830-131382 + 26 9.41e-10 GGAAAAAAAT AGGTCTTACCCGGATTCGAACCGGGGTTGT TCGGATCAAA chrX:374200-374300 + 25 1.42e-09 AGAAACAAAG CACTCACGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrXIII:131580-132131 + 20 1.42e-09 AGAAACAAAG CACTCACGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrXIII:747705-748131 + 24 1.42e-09 TACTAAAAAA CACTCACGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrII:405651-406321 - 66 1.92e-09 AAAAT CTCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrXII:426849-427473 - 63 1.92e-09 AAAAAATT CTCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrIV:568698-569277 - 69 1.92e-09 TT CTCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrX:204498-204598 - 56 1.92e-09 CAAAAAAAAT CTCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrIX:324063-324550 + 47 1.92e-09 CTAAAAAAAT CTCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrVII:730969-731425 - 34 2.57e-09 AAGCAAAAAA CGACCCCAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrVI:137243-137805 + 12 2.57e-09 AATAAAAAAA CGACCCCAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrXI:490711-491317 - 47 1.08e-08 TAAAAAAATT CTTCCCCGCCAGGACTTGAACCTGGAATCT TCTGGTTCGT chrVIII:132789-133324 + 20 1.28e-08 AAAAAATTAT CGACAACTGCAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrIV:437558-438133 - 29 1.28e-08 ATAAAAATGA CGACAACTGCAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrXIII:258924-259448 + 22 1.28e-08 CAAAAAATAA CGACAACTGCAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrXVI:744082-744617 - 27 2.07e-08 GAAAAAATTT TGCCACCTGTCAGAATTGAACTAACGACCT TTGCATTACA chrXIV:374731-375105 - 62 2.23e-08 TTTTCAAAT TGCGAACTCTGTGGATCGAACACAGGACCT CCAGATGACT chrVII:286945-287723 + 66 2.23e-08 GTATAAAAAA TGAAACGGACAGGAATTGAACCTGCAACCC TTCGA chrXV:274475-274986 - 64 4.07e-08 AGAAATG CGTCACAGACAGGATTCGAACCTGCGCAGG TAAAACCCAA chrXII:592378-592712 + 24 4.70e-08 CAAAAAATAA TGAGAGCTAAGGGATTCGAACCCTTGCATC CGAAGATATC chrXII:732013-732292 - 59 4.70e-08 CAAAAAATAA TGAGAGCTAAGGGATTCGAACCCTTGCATC CGAAGATATC chrXVI:689401-689871 - 31 6.67e-08 AAAAATAATA CGACACCAGCAGGATTTGAACCAGCGCGGG CAGAGCCCAA chrIII:149728-150235 - 31 9.31e-08 AAAAATTTAA TAGCGCCGCTCGGTTTCGATCCGAGGACAT CAGGGTTATG chrXVI:338665-339117 + 7 9.31e-08 TAAATT TAGCGCCGCTCGGTTTCGATCCGAGGACAT CAGGGTTATG chrVII:205170-206118 - 11 2.09e-07 TAAAAAATAA TGGTTGCTAAGAGATTCGAACTCTTGCATC TTACGATACC chrIII:90789-91090 - 54 2.09e-07 AAAAAAATAA TGGTTGCTAAGAGATTCGAACTCTTGCATC TTACGATACC chrXIV:725874-726354 + 70 2.34e-07 AAAAAAATAC TGAAGGATGCGAGGTTCGAACTCGCGCGGA C chrXIII:168684-169021 - 52 3.11e-07 AAAAAAAATA TCTCCCGGGGGCGAGTCGAACGCCCGATCT CAAGATTTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVYCNCDMSSGGRWTCGAACCSVBGACSY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:860167-860705 2.6e-13 33_[-1]_37 chrX:531628-531728 2.6e-13 14_[-1]_56 chrXV:226419-226869 2.6e-13 16_[+1]_54 chrIV:83337-83816 2.6e-13 62_[-1]_8 chrVII:738805-739508 4.9e-12 59_[-1]_11 chrXII:1051929-1052198 4.9e-12 57_[+1]_13 chrV:443056-443339 4.9e-12 54_[+1]_16 chrII:197286-197835 4.9e-12 27_[-1]_43 chrXIII:586400-586895 1.9e-11 38_[+1]_32 chrXIII:420321-420858 1.9e-11 48_[+1]_22 chrVII:823360-823695 1.9e-11 48_[-1]_22 chrV:438499-438981 1.9e-11 53_[-1]_17 chrXIII:372182-372757 1.9e-11 25_[+1]_45 chrXI:307867-308440 1.9e-11 40_[+1]_30 chrXI:379495-379926 1.9e-11 63_[-1]_7 chrV:311722-312283 2.5e-11 70_[+1] chrXII:214688-215060 2.5e-11 58_[+1]_12 chrXIV:96005-96450 3.3e-11 63_[+1]_7 chrIV:1351882-1353099 4.9e-11 25_[+1]_45 chrXIII:480359-480903 4.9e-11 39_[+1]_31 chrX:414707-414807 4.9e-11 54_[-1]_16 chrIV:1016956-1017533 6.4e-11 12_[+1]_58 chrIV:1175595-1176113 8.3e-11 67_[-1]_3 chrXIII:572569-573170 8.3e-11 63_[+1]_7 chrIV:884292-884613 1.7e-10 61_[-1]_9 chrXI:578780-579333 3.9e-10 24_[-1]_46 chrIII:168070-168532 3.9e-10 49_[+1]_21 chrV:249797-250878 3.9e-10 40_[-1]_30 chrXVI:768945-769458 3.9e-10 55_[+1]_15 chrX:538526-538626 4.9e-10 16_[-1]_54 chrII:644974-645413 6.8e-10 65_[-1]_5 chrVIII:388679-389205 6.8e-10 [+1]_70 chrXIII:195938-196291 6.8e-10 3_[+1]_67 chrV:176887-177447 6.8e-10 23_[-1]_47 chrV:130830-131382 9.4e-10 25_[+1]_45 chrX:374200-374300 1.4e-09 24_[+1]_46 chrXIII:131580-132131 1.4e-09 19_[+1]_51 chrXIII:747705-748131 1.4e-09 23_[+1]_47 chrII:405651-406321 1.9e-09 65_[-1]_5 chrXII:426849-427473 1.9e-09 62_[-1]_8 chrIV:568698-569277 1.9e-09 68_[-1]_2 chrX:204498-204598 1.9e-09 55_[-1]_15 chrIX:324063-324550 1.9e-09 46_[+1]_24 chrVII:730969-731425 2.6e-09 33_[-1]_37 chrVI:137243-137805 2.6e-09 11_[+1]_59 chrXI:490711-491317 1.1e-08 46_[-1]_24 chrVIII:132789-133324 1.3e-08 19_[+1]_51 chrIV:437558-438133 1.3e-08 28_[-1]_42 chrXIII:258924-259448 1.3e-08 21_[+1]_49 chrXVI:744082-744617 2.1e-08 26_[-1]_44 chrXIV:374731-375105 2.2e-08 61_[-1]_9 chrVII:286945-287723 2.2e-08 65_[+1]_5 chrXV:274475-274986 4.1e-08 63_[-1]_7 chrXII:592378-592712 4.7e-08 23_[+1]_47 chrXII:732013-732292 4.7e-08 58_[-1]_12 chrXVI:689401-689871 6.7e-08 30_[-1]_40 chrIII:149728-150235 9.3e-08 30_[-1]_40 chrXVI:338665-339117 9.3e-08 6_[+1]_64 chrVII:205170-206118 2.1e-07 10_[-1]_60 chrIII:90789-91090 2.1e-07 53_[-1]_17 chrXIV:725874-726354 2.3e-07 69_[+1]_1 chrXIII:168684-169021 3.1e-07 51_[-1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVYCNCDMSSGGRWTCGAACCSVBGACSY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGVYCNCDMSSGGRWTCGAACCSVBGACSY width=30 seqs=62 chrXVI:860167-860705 ( 34) TGCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrX:531628-531728 ( 15) TGCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrXV:226419-226869 ( 17) TGCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrIV:83337-83816 ( 63) TGCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrVII:738805-739508 ( 60) TGGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrXII:1051929-1052198 ( 58) TGGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrV:443056-443339 ( 55) TGGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrII:197286-197835 ( 28) TGGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrXIII:586400-586895 ( 39) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrXIII:420321-420858 ( 49) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrVII:823360-823695 ( 49) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrV:438499-438981 ( 54) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrXIII:372182-372757 ( 26) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrXI:307867-308440 ( 41) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrXI:379495-379926 ( 64) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrV:311722-312283 ( 71) TGGACGCAACCGGAATCGAACCGATGACCT 1 chrXII:214688-215060 ( 59) TGGACGCAACCGGAATCGAACCGATGACCT 1 chrXIV:96005-96450 ( 64) TGAGCGGTACGAGAATCGAACCCGTGTCCC 1 chrIV:1351882-1353099 ( 26) AGCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrXIII:480359-480903 ( 40) AGCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrX:414707-414807 ( 55) AGCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrIV:1016956-1017533 ( 13) CTCCGAAGCGGGGAGTCGAACCCCGGTCTC 1 chrIV:1175595-1176113 ( 68) TGCTCCAGGGGAGGTTCGAACTCTCGACCT 1 chrXIII:572569-573170 ( 64) TGCTCCAGGGGAGGTTCGAACTCTCGACCT 1 chrIV:884292-884613 ( 62) TGCTCGAGGTGGGGTTTGAACCCACGACGG 1 chrXI:578780-579333 ( 25) CTCCTCATAGGGGGCTCGAACCCCTGACAT 1 chrIII:168070-168532 ( 50) AGGTCCTACCCGGATTCGAACCGGGGTTGT 1 chrV:249797-250878 ( 41) AGGTCCTACCCGGATTCGAACCGGGGTTGT 1 chrXVI:768945-769458 ( 56) CTCCTCATAGGGGGCTCGAACCCCTGACAT 1 chrX:538526-538626 ( 17) CGTTCCGTACGGGACTCGAACCCGCAGTCT 1 chrII:644974-645413 ( 66) CTCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrVIII:388679-389205 ( 1) GGGGCGAGCTGGGAATTGAACCCAGGGCCT 1 chrXIII:195938-196291 ( 4) GGGGCGAGCTGGGAATTGAACCCAGGGCCT 1 chrV:176887-177447 ( 24) CTCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrV:130830-131382 ( 26) AGGTCTTACCCGGATTCGAACCGGGGTTGT 1 chrX:374200-374300 ( 25) CACTCACGATGGGGGTCGAACCCATAATCT 1 chrXIII:131580-132131 ( 20) CACTCACGATGGGGGTCGAACCCATAATCT 1 chrXIII:747705-748131 ( 24) CACTCACGATGGGGGTCGAACCCATAATCT 1 chrII:405651-406321 ( 66) CTCCGCGACGGGGAATTGAACCCCGATCTG 1 chrXII:426849-427473 ( 63) CTCCGCGACGGGGAATTGAACCCCGATCTG 1 chrIV:568698-569277 ( 69) CTCCGCGACGGGGAATTGAACCCCGATCTG 1 chrX:204498-204598 ( 56) CTCCGCGACGGGGAATTGAACCCCGATCTG 1 chrIX:324063-324550 ( 47) CTCCGCGACGGGGAATTGAACCCCGATCTG 1 chrVII:730969-731425 ( 34) CGACCCCAGTGAGGGTTGAACTCACGATCT 1 chrVI:137243-137805 ( 12) CGACCCCAGTGAGGGTTGAACTCACGATCT 1 chrXI:490711-491317 ( 47) CTTCCCCGCCAGGACTTGAACCTGGAATCT 1 chrVIII:132789-133324 ( 20) CGACAACTGCAGGACTCGAACCTGCGCGGG 1 chrIV:437558-438133 ( 29) CGACAACTGCAGGACTCGAACCTGCGCGGG 1 chrXIII:258924-259448 ( 22) CGACAACTGCAGGACTCGAACCTGCGCGGG 1 chrXVI:744082-744617 ( 27) TGCCACCTGTCAGAATTGAACTAACGACCT 1 chrXIV:374731-375105 ( 62) TGCGAACTCTGTGGATCGAACACAGGACCT 1 chrVII:286945-287723 ( 66) TGAAACGGACAGGAATTGAACCTGCAACCC 1 chrXV:274475-274986 ( 64) CGTCACAGACAGGATTCGAACCTGCGCAGG 1 chrXII:592378-592712 ( 24) TGAGAGCTAAGGGATTCGAACCCTTGCATC 1 chrXII:732013-732292 ( 59) TGAGAGCTAAGGGATTCGAACCCTTGCATC 1 chrXVI:689401-689871 ( 31) CGACACCAGCAGGATTTGAACCAGCGCGGG 1 chrIII:149728-150235 ( 31) TAGCGCCGCTCGGTTTCGATCCGAGGACAT 1 chrXVI:338665-339117 ( 7) TAGCGCCGCTCGGTTTCGATCCGAGGACAT 1 chrVII:205170-206118 ( 11) TGGTTGCTAAGAGATTCGAACTCTTGCATC 1 chrIII:90789-91090 ( 54) TGGTTGCTAAGAGATTCGAACTCTTGCATC 1 chrXIV:725874-726354 ( 70) TGAAGGATGCGAGGTTCGAACTCGCGCGGA 1 chrXIII:168684-169021 ( 52) TCTCCCGGGGGCGAGTCGAACGCCCGATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVYCNCDMSSGGRWTCGAACCSVBGACSY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.7224 E= 3.0e-208 -167 89 -257 74 -193 -357 192 -80 -9 107 33 -225 -225 107 -25 27 -93 133 -11 -80 -45 89 -11 -35 -45 138 1 -193 -35 -1260 113 14 20 123 1 -1260 -225 113 75 -67 -145 95 143 -1260 -26 -357 189 -425 -1260 -1260 238 -1260 83 -1260 113 -325 55 -25 -40 -35 -1260 -1260 -1260 170 -1260 201 -1260 -45 -1260 -1260 238 -1260 170 -1260 -1260 -1260 165 -1260 -1260 -325 -1260 238 -1260 -1260 -425 192 -357 -35 -325 143 89 -167 -45 60 101 -167 -1260 33 123 -1 -45 -1260 201 -1260 79 -25 -77 -67 -193 164 -125 -35 -225 129 51 -67 -425 51 -11 79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVYCNCDMSSGGRWTCGAACCSVBGACSY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 62 E= 3.0e-208 0.096774 0.354839 0.032258 0.516129 0.080645 0.016129 0.725806 0.177419 0.290323 0.403226 0.241935 0.064516 0.064516 0.403226 0.161290 0.370968 0.161290 0.483871 0.177419 0.177419 0.225806 0.354839 0.177419 0.241935 0.225806 0.500000 0.193548 0.080645 0.241935 0.000000 0.419355 0.338710 0.354839 0.451613 0.193548 0.000000 0.064516 0.419355 0.322581 0.193548 0.112903 0.370968 0.516129 0.000000 0.258065 0.016129 0.709677 0.016129 0.000000 0.000000 1.000000 0.000000 0.548387 0.000000 0.419355 0.032258 0.451613 0.161290 0.145161 0.241935 0.000000 0.000000 0.000000 1.000000 0.000000 0.774194 0.000000 0.225806 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.967742 0.000000 0.000000 0.032258 0.000000 1.000000 0.000000 0.000000 0.016129 0.725806 0.016129 0.241935 0.032258 0.516129 0.354839 0.096774 0.225806 0.290323 0.387097 0.096774 0.000000 0.241935 0.451613 0.306452 0.225806 0.000000 0.774194 0.000000 0.532258 0.161290 0.112903 0.193548 0.080645 0.596774 0.080645 0.241935 0.064516 0.467742 0.274194 0.193548 0.016129 0.274194 0.177419 0.532258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVYCNCDMSSGGRWTCGAACCSVBGACSY MEME-1 regular expression -------------------------------------------------------------------------------- [TC]G[CAG][CT]C[CTA][CA][GTA][CA][CG][GC][GA]G[AG][AT]T[CT]GAAC[CT][CG][GCA][GTC][GA]A[CT][CG][TC] -------------------------------------------------------------------------------- Time 353.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GSKYKYKTGGCCBAGTGGKHWRAG MEME-2 width = 24 sites = 36 llr = 592 E-value = 3.6e-065 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSKYKYKTGGCCBAGTGGKHWRAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1:211:2:::1a2:1::3556: pos.-specific C :42414::::763::12:12:111 probability G 9532415:8a:22:8:5a51:328 matrix T 1154434a::334::92:445:21 bits 2.4 * * 2.1 * * 1.9 * * * 1.7 * *** * * Relative 1.4 * **** ** * Entropy 1.2 * **** *** * * (23.7 bits) 1.0 * **** *** * * 0.7 ** ****** *** ** ** * 0.5 ** * ****** ****** ** * 0.2 ******************* **** 0.0 ------------------------ Multilevel GGTCGCGTGGCCTAGTGGGTAAAG consensus CGTTTT TTC C TATG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKYKYKTGGCCBAGTGGKHWRAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrXII:734596-734974 + 67 5.81e-12 AACAAAGTTT GGTCTCTTGGCCCAGTTGGTTAAG GCACCGTGCT chrVII:738805-739508 + 16 5.81e-12 GAAAAAAATA GGTCTCTTGGCCCAGTTGGTTAAG GCACCGTGCT chrXIV:602076-602575 + 37 5.81e-12 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAG GCACCGTGCT chrXII:656841-657198 - 14 3.23e-10 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTAGCG CGCTCCCTTA chrVII:823360-823695 + 5 4.30e-10 GAGT GGTTTCGTGGTCTAGTCGGTTATG GCATCTGCTT chrV:438499-438981 + 10 4.30e-10 AACAAATTA GGTTTCGTGGTCTAGTCGGTTATG GCATCTGCTT chrXIII:372182-372757 - 76 4.30e-10 T GGTTTCGTGGTCTAGTCGGTTATG GCATCTGCTT chrXI:379495-379926 + 20 4.30e-10 CAGATTAATA GGTTTCGTGGTCTAGTCGGTTATG GCATCTGCTT chrX:378170-378270 + 50 4.30e-10 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATG GCATCTGCTT chrXII:92417-92724 + 28 1.61e-09 AAGTTAATAA GGGCGTGTGGTCTAGTGGTATGAT TCTCGCTTTG chrXII:628106-628638 + 61 2.32e-09 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAG GCGCCTGATT chrX:424288-424388 - 39 2.32e-09 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAG GCGGCAGACT chrXIII:504669-505219 + 1 2.32e-09 . GGTTGTTTGGCCGAGCGGTCTAAG GCGCCTGATT chrXI:84023-84435 + 29 2.32e-09 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAG GCGGCAGACT chrXII:962826-963305 - 17 2.32e-09 TATTATCGAC GGAGGGTTGGCCGAGTGGTCTAAG GCGGCAGACT chrX:617686-617786 + 48 2.61e-09 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAG GCGTCAGATT chrXI:46588-47005 - 37 1.60e-08 AAATTACTCA GCCCTTTTGGCCAAGTGGTAAGGC ATCGCACTCG chrX:374200-374300 - 73 3.36e-08 AGTA GCTCGCGTGGCGTAATGGCAACGC GTCTGACTTC chrXIII:131580-132131 - 68 3.36e-08 AGAAATTTA GCTCGCGTGGCGTAATGGCAACGC GTCTGACTTC chrXIII:747705-748131 - 72 3.36e-08 GACTA GCTCGCGTGGCGTAATGGCAACGC GTCTGACTTC chrXIV:374731-375105 + 1 3.67e-08 . GCGGACTTAGCTCAGTTGGGAGAG CGCCAGACTG chrXV:353916-354310 - 27 3.67e-08 ACGGTTTACT GCTTCTATGGCCAAGTTGGTAAGG CGCCACACTA chrIV:1351882-1353099 - 75 4.01e-08 TA GCCTTGTTGGCGCAATCGGTAGCG CGTATGACTC chrX:414707-414807 + 12 4.01e-08 CAACGAATTA GCCTTGTTGGCGCAATCGGTAGCG CGTATGACTC chrXV:226419-226869 - 64 5.18e-08 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAAT CCAACGTTGC chrVII:930879-931141 - 40 5.18e-08 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAAAAT CCAACGTTGC chrIV:83337-83816 + 22 5.18e-08 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAAAAT CCAACGTTGC chrIII:123495-123781 - 37 5.63e-08 TTTCAAAGGA GGGCGTGTGGTCTAGAGGTATGAT TCTCGCTTAG chrIV:1175595-1176113 + 25 8.43e-08 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAAGAG CGTCAGTCTC chrVII:440522-441108 - 19 8.43e-08 TAAAATATAT GCGGATTTAGCTCAGTTGGGAGAG CGCCAGACTG chrX:390845-390945 - 46 8.43e-08 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAAGAG CGTCAGTCTC chrVIII:358307-358759 - 63 8.43e-08 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAG CGCCAGACTG chrXV:340107-340647 - 21 1.24e-07 TCAAGATCTG TTCCTCGTGGCCCAATGGTCACGG CGTCTGGCTA chrXI:490711-491317 + 4 1.24e-07 TTG TTCCTCGTGGCCCAATGGTCACGG CGTCTGGCTA chrVI:137243-137805 - 62 2.19e-07 AAAAGTGACT GACTCCATGGCCAAGTTGGTTAAG GCGTGCGACT chrXVI:731604-732253 + 5 8.33e-07 AAAC TTTCGCATAGCTGAGTGGTAAGTG GGCTACCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKYKYKTGGCCBAGTGGKHWRAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:734596-734974 5.8e-12 66_[+2]_10 chrVII:738805-739508 5.8e-12 15_[+2]_61 chrXIV:602076-602575 5.8e-12 36_[+2]_40 chrXII:656841-657198 3.2e-10 13_[-2]_63 chrVII:823360-823695 4.3e-10 4_[+2]_72 chrV:438499-438981 4.3e-10 9_[+2]_67 chrXIII:372182-372757 4.3e-10 75_[-2]_1 chrXI:379495-379926 4.3e-10 19_[+2]_57 chrX:378170-378270 4.3e-10 49_[+2]_27 chrXII:92417-92724 1.6e-09 27_[+2]_49 chrXII:628106-628638 2.3e-09 60_[+2]_16 chrX:424288-424388 2.3e-09 38_[-2]_38 chrXIII:504669-505219 2.3e-09 [+2]_76 chrXI:84023-84435 2.3e-09 28_[+2]_48 chrXII:962826-963305 2.3e-09 16_[-2]_60 chrX:617686-617786 2.6e-09 47_[+2]_29 chrXI:46588-47005 1.6e-08 36_[-2]_40 chrX:374200-374300 3.4e-08 72_[-2]_4 chrXIII:131580-132131 3.4e-08 67_[-2]_9 chrXIII:747705-748131 3.4e-08 71_[-2]_5 chrXIV:374731-375105 3.7e-08 [+2]_76 chrXV:353916-354310 3.7e-08 26_[-2]_50 chrIV:1351882-1353099 4e-08 74_[-2]_2 chrX:414707-414807 4e-08 11_[+2]_65 chrXV:226419-226869 5.2e-08 63_[-2]_13 chrVII:930879-931141 5.2e-08 39_[-2]_37 chrIV:83337-83816 5.2e-08 21_[+2]_55 chrIII:123495-123781 5.6e-08 36_[-2]_40 chrIV:1175595-1176113 8.4e-08 24_[+2]_52 chrVII:440522-441108 8.4e-08 18_[-2]_58 chrX:390845-390945 8.4e-08 45_[-2]_31 chrVIII:358307-358759 8.4e-08 62_[-2]_14 chrXV:340107-340647 1.2e-07 20_[-2]_56 chrXI:490711-491317 1.2e-07 3_[+2]_73 chrVI:137243-137805 2.2e-07 61_[-2]_15 chrXVI:731604-732253 8.3e-07 4_[+2]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKYKYKTGGCCBAGTGGKHWRAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSKYKYKTGGCCBAGTGGKHWRAG width=24 seqs=36 chrXII:734596-734974 ( 67) GGTCTCTTGGCCCAGTTGGTTAAG 1 chrVII:738805-739508 ( 16) GGTCTCTTGGCCCAGTTGGTTAAG 1 chrXIV:602076-602575 ( 37) GGTCTCTTGGCCCAGTTGGTTAAG 1 chrXII:656841-657198 ( 14) GGGCGTGTGGCGTAGTCGGTAGCG 1 chrVII:823360-823695 ( 5) GGTTTCGTGGTCTAGTCGGTTATG 1 chrV:438499-438981 ( 10) GGTTTCGTGGTCTAGTCGGTTATG 1 chrXIII:372182-372757 ( 76) GGTTTCGTGGTCTAGTCGGTTATG 1 chrXI:379495-379926 ( 20) GGTTTCGTGGTCTAGTCGGTTATG 1 chrX:378170-378270 ( 50) GGTTTCGTGGTCTAGTCGGTTATG 1 chrXII:92417-92724 ( 28) GGGCGTGTGGTCTAGTGGTATGAT 1 chrXII:628106-628638 ( 61) GGTTGTTTGGCCGAGCGGTCTAAG 1 chrX:424288-424388 ( 39) GGAGGGTTGGCCGAGTGGTCTAAG 1 chrXIII:504669-505219 ( 1) GGTTGTTTGGCCGAGCGGTCTAAG 1 chrXI:84023-84435 ( 29) GGAGGGTTGGCCGAGTGGTCTAAG 1 chrXII:962826-963305 ( 17) GGAGGGTTGGCCGAGTGGTCTAAG 1 chrX:617686-617786 ( 48) GGGAGTTTGGCCGAGTGGTTTAAG 1 chrXI:46588-47005 ( 37) GCCCTTTTGGCCAAGTGGTAAGGC 1 chrX:374200-374300 ( 73) GCTCGCGTGGCGTAATGGCAACGC 1 chrXIII:131580-132131 ( 68) GCTCGCGTGGCGTAATGGCAACGC 1 chrXIII:747705-748131 ( 72) GCTCGCGTGGCGTAATGGCAACGC 1 chrXIV:374731-375105 ( 1) GCGGACTTAGCTCAGTTGGGAGAG 1 chrXV:353916-354310 ( 27) GCTTCTATGGCCAAGTTGGTAAGG 1 chrIV:1351882-1353099 ( 75) GCCTTGTTGGCGCAATCGGTAGCG 1 chrX:414707-414807 ( 12) GCCTTGTTGGCGCAATCGGTAGCG 1 chrXV:226419-226869 ( 64) GCGCAAGTGGTTTAGTGGTAAAAT 1 chrVII:930879-931141 ( 40) GCGCAAGTGGTTTAGTGGTAAAAT 1 chrIV:83337-83816 ( 22) GCGCAAGTGGTTTAGTGGTAAAAT 1 chrIII:123495-123781 ( 37) GGGCGTGTGGTCTAGAGGTATGAT 1 chrIV:1175595-1176113 ( 25) GCTTCAGTAGCTCAGTAGGAAGAG 1 chrVII:440522-441108 ( 19) GCGGATTTAGCTCAGTTGGGAGAG 1 chrX:390845-390945 ( 46) GCTTCAGTAGCTCAGTAGGAAGAG 1 chrVIII:358307-358759 ( 63) GCGGATTTAGCTCAGTTGGGAGAG 1 chrXV:340107-340647 ( 21) TTCCTCGTGGCCCAATGGTCACGG 1 chrXI:490711-491317 ( 4) TTCCTCGTGGCCCAATGGTCACGG 1 chrVI:137243-137805 ( 62) GACTCCATGGCCAAGTTGGTTAAG 1 chrXVI:731604-732253 ( 5) TTTCGCATAGCTGAGTGGTAAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKYKYKTGGCCBAGTGGKHWRAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 46200 bayes= 11.1731 E= 3.6e-065 -1181 -1181 226 -189 -347 112 130 -189 -189 -20 53 62 -347 121 -20 23 -89 -79 91 23 -115 121 -47 -15 -189 -1181 138 44 -1181 -1181 -1181 170 -89 -1181 212 -1181 -1181 -1181 238 -1181 -1181 191 -1181 -15 -1181 160 -20 -30 -189 80 2 34 170 -1181 -1181 -1181 -66 -1181 207 -1181 -347 -179 -1181 157 -247 21 138 -47 -1181 -1181 238 -1181 -1181 -120 138 44 11 2 -120 34 78 -1181 -1181 62 78 -47 80 -1181 85 -120 2 -89 -1181 -79 197 -115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKYKYKTGGCCBAGTGGKHWRAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 36 E= 3.6e-065 0.000000 0.000000 0.916667 0.083333 0.027778 0.416667 0.472222 0.083333 0.083333 0.166667 0.277778 0.472222 0.027778 0.444444 0.166667 0.361111 0.166667 0.111111 0.361111 0.361111 0.138889 0.444444 0.138889 0.277778 0.083333 0.000000 0.500000 0.416667 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.722222 0.000000 0.277778 0.000000 0.583333 0.166667 0.250000 0.083333 0.333333 0.194444 0.388889 1.000000 0.000000 0.000000 0.000000 0.194444 0.000000 0.805556 0.000000 0.027778 0.055556 0.000000 0.916667 0.055556 0.222222 0.500000 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.500000 0.416667 0.333333 0.194444 0.083333 0.388889 0.527778 0.000000 0.000000 0.472222 0.527778 0.138889 0.333333 0.000000 0.555556 0.083333 0.194444 0.166667 0.000000 0.111111 0.750000 0.138889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKYKYKTGGCCBAGTGGKHWRAG MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][TG][CT][GT][CT][GT]TGG[CT][CT][TC]AGT[GCT]G[GT][TA][AT][AG]AG -------------------------------------------------------------------------------- Time 678.28 secs. ******************************************************************************** ******************************************************************************** MOTIF WTAGTKTARTGGYYAKMAYNBSCGSTTBT MEME-3 width = 29 sites = 16 llr = 372 E-value = 5.8e-039 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTAGTKTARTGGYYAKMAYNBSCGSTTBT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6:a::1:a52::::a:58:3:13:::::: pos.-specific C :::::::::2:243::4:43337362:33 probability G 1::a:4::5:88:2:6:::335:74::4: matrix T 3a::a5a::62:65:41262421::8a48 bits 2.4 * 2.1 * 1.9 * 1.7 **** ** ** * * Relative 1.4 **** ** ** * ** * Entropy 1.2 **** ** ** ** **** (33.6 bits) 1.0 **** *** *** ** ** ***** * 0.7 ******** *** ***** ***** * 0.5 ******************* ********* 0.2 ******************* ********* 0.0 ----------------------------- Multilevel ATAGTTTAATGGTTAGAATGTGCGCTTGT consensus T G G CC TC CACCACG TC sequence CG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTAGTKTARTGGYYAKMAYNBSCGSTTBT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrII:405651-406321 + 30 6.36e-15 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrXII:426849-427473 + 27 6.36e-15 CTTATCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrVII:544400-544907 - 11 6.36e-15 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrIV:568698-569277 + 33 6.36e-15 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrX:204498-204598 + 20 6.36e-15 AAAATCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrXII:448454-448982 - 19 1.85e-12 TTCCGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTTT GATCCGGACA chrV:249797-250878 + 5 1.85e-12 TCCT ATAGTGTAGTGGTTATCACTTTCGGTTTT GATCCGGACA chrV:130830-131382 - 63 1.85e-12 AGAGGTTTT ATAGTGTAGTGGTTATCACTTTCGGTTTT GATCCGAACA chrXV:110836-111192 - 35 4.23e-11 ACCCGGGCGG TTAGTGTAGTGGTTATCATCCCACCCTTC CAAGGTGGGG chrIX:370262-370579 + 53 8.11e-11 ATAATCCGAT ATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrII:644974-645413 + 30 8.11e-11 ATTATCCGAT ATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrIV:1016956-1017533 - 50 1.42e-10 ACAATCCGAT GTAGTGTAACGGCTATCACATCACGTTCT CACCGTGGAG chrV:434397-435137 - 71 2.79e-10 A TTAGTTTAGATCCGAGATTCCGCGCTTCC ACCACTTAGT chrXV:854059-854792 + 56 2.79e-10 GCCTGAACAA TTAGTTTAGATCCGAGATTCCGCGCTTCC ACCACTTAGT chrIV:945641-946640 - 22 2.79e-10 GCCTGAACAA TTAGTTTAGATCCGAGATTCCGCGCTTCC ACCACTTAGT chrVIII:62550-62967 + 53 9.63e-10 ATATGCCATC TTAGTATAGTGGTTAGTACACATCGTTGT GGCCGATGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTAGTKTARTGGYYAKMAYNBSCGSTTBT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:405651-406321 6.4e-15 29_[+3]_42 chrXII:426849-427473 6.4e-15 26_[+3]_45 chrVII:544400-544907 6.4e-15 10_[-3]_61 chrIV:568698-569277 6.4e-15 32_[+3]_39 chrX:204498-204598 6.4e-15 19_[+3]_52 chrXII:448454-448982 1.8e-12 18_[-3]_53 chrV:249797-250878 1.8e-12 4_[+3]_67 chrV:130830-131382 1.8e-12 62_[-3]_9 chrXV:110836-111192 4.2e-11 34_[-3]_37 chrIX:370262-370579 8.1e-11 52_[+3]_19 chrII:644974-645413 8.1e-11 29_[+3]_42 chrIV:1016956-1017533 1.4e-10 49_[-3]_22 chrV:434397-435137 2.8e-10 70_[-3]_1 chrXV:854059-854792 2.8e-10 55_[+3]_16 chrIV:945641-946640 2.8e-10 21_[-3]_50 chrVIII:62550-62967 9.6e-10 52_[+3]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTAGTKTARTGGYYAKMAYNBSCGSTTBT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTAGTKTARTGGYYAKMAYNBSCGSTTBT width=29 seqs=16 chrII:405651-406321 ( 30) ATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrXII:426849-427473 ( 27) ATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrVII:544400-544907 ( 11) ATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrIV:568698-569277 ( 33) ATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrX:204498-204598 ( 20) ATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrXII:448454-448982 ( 19) ATAGTGTAGTGGTTATCACTTTCGGTTTT 1 chrV:249797-250878 ( 5) ATAGTGTAGTGGTTATCACTTTCGGTTTT 1 chrV:130830-131382 ( 63) ATAGTGTAGTGGTTATCACTTTCGGTTTT 1 chrXV:110836-111192 ( 35) TTAGTGTAGTGGTTATCATCCCACCCTTC 1 chrIX:370262-370579 ( 53) ATAGTGTAACGGCTATCACATCACGCTTT 1 chrII:644974-645413 ( 30) ATAGTGTAACGGCTATCACATCACGCTTT 1 chrIV:1016956-1017533 ( 50) GTAGTGTAACGGCTATCACATCACGTTCT 1 chrV:434397-435137 ( 71) TTAGTTTAGATCCGAGATTCCGCGCTTCC 1 chrXV:854059-854792 ( 56) TTAGTTTAGATCCGAGATTCCGCGCTTCC 1 chrIV:945641-946640 ( 22) TTAGTTTAGATCCGAGATTCCGCGCTTCC 1 chrVIII:62550-62967 ( 53) TTAGTATAGTGGTTAGTACACATCGTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTAGTKTARTGGYYAKMAYNBSCGSTTBT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.3982 E= 5.8e-039 102 -1064 -162 2 -1064 -1064 -1064 170 170 -1064 -1064 -1064 -1064 -1064 238 -1064 -1064 -1064 -1064 170 -230 -1064 119 70 -1064 -1064 -1064 170 170 -1064 -1064 -1064 70 -1064 138 -1064 -72 -3 -1064 102 -1064 -1064 208 -72 -1064 -3 208 -1064 -1064 97 -1064 102 -1064 70 -3 70 170 -1064 -1064 -1064 -1064 -1064 155 51 70 119 -1064 -230 140 -1064 -1064 -72 -1064 119 -1064 87 -30 38 70 -72 -1064 70 70 28 -230 38 138 -72 -30 184 -1064 -230 -1064 70 184 -1064 -1064 155 119 -1064 -1064 -3 -1064 140 -1064 -1064 -1064 170 -1064 38 97 28 -1064 38 -1064 128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTAGTKTARTGGYYAKMAYNBSCGSTTBT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 16 E= 5.8e-039 0.625000 0.000000 0.062500 0.312500 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.062500 0.000000 0.437500 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.187500 0.187500 0.000000 0.625000 0.000000 0.000000 0.812500 0.187500 0.000000 0.187500 0.812500 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.312500 0.187500 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.562500 0.437500 0.500000 0.437500 0.000000 0.062500 0.812500 0.000000 0.000000 0.187500 0.000000 0.437500 0.000000 0.562500 0.250000 0.250000 0.312500 0.187500 0.000000 0.312500 0.312500 0.375000 0.062500 0.250000 0.500000 0.187500 0.250000 0.687500 0.000000 0.062500 0.000000 0.312500 0.687500 0.000000 0.000000 0.562500 0.437500 0.000000 0.000000 0.187500 0.000000 0.812500 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.375000 0.375000 0.000000 0.250000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTAGTKTARTGGYYAKMAYNBSCGSTTBT MEME-3 regular expression -------------------------------------------------------------------------------- [AT]TAGT[TG]TA[AG]TGG[TC][TC]A[GT][AC]A[TC][GAC][TCG][GC][CA][GC][CG]TT[GTC][TC] -------------------------------------------------------------------------------- Time 993.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:266212-266784 8.37e-01 100 chrVIII:125914-126270 9.54e-01 100 chrXV:24305-25225 5.59e-01 100 chrVI:220262-221545 6.94e-01 100 chrXI:232239-233422 4.73e-01 100 chrI:142112-143728 2.53e-01 100 chrIV:1245668-1246210 1.96e-01 100 chrXVI:794902-796171 4.26e-01 100 chrXIII:572569-573170 1.23e-06 63_[+1(8.29e-11)]_7 chrVII:400359-400600 5.95e-01 100 chrVII:286945-287723 7.99e-05 65_[+1(2.23e-08)]_5 chrXI:355379-355850 1.02e-01 100 chrIV:555357-556639 3.28e-01 100 chrIII:208-1142 2.67e-01 100 chrXVI:338665-339117 3.44e-05 6_[+1(9.31e-08)]_64 chrIV:913988-914854 5.15e-02 100 chrXI:517792-518070 8.37e-01 100 chrIX:248522-249440 7.92e-01 100 chrXIV:546569-547473 5.45e-01 100 chrIV:785240-786710 9.32e-01 100 chrXII:368718-370316 4.86e-01 100 chrIX:231188-231671 8.49e-01 100 chrII:234626-235990 7.75e-01 100 chrXI:431918-432465 6.27e-01 100 chrXVI:136350-136743 9.51e-01 100 chrVII:310575-312654 6.83e-01 100 chrXV:710086-710514 8.20e-01 100 chrXII:48770-49368 6.47e-02 71_[+3(8.23e-05)] chrVII:736200-736809 9.90e-01 100 chrXV:832245-832893 9.84e-01 100 chrXIII:145955-146221 7.87e-01 100 chrV:42145-42633 1.19e-01 100 chrXVI:559868-560447 7.96e-01 100 chrII:408673-408899 9.83e-01 100 chrIV:570924-573717 3.19e-01 100 chrXV:624501-624798 8.98e-01 100 chrIV:689616-690854 7.53e-01 100 chrXIII:747705-748131 1.71e-10 23_[+1(1.42e-09)]_18_[-2(3.36e-08)]_\ 5 chrVI:157907-158251 2.48e-01 100 chrXII:720530-721519 6.82e-01 100 chrI:24959-25483 9.77e-01 100 chrX:517658-517758 4.31e-01 100 chrVII:147906-149462 6.77e-01 100 chrVIII:358307-358759 7.40e-05 62_[-2(8.43e-08)]_14 chrXII:837620-839451 6.21e-01 100 chrXIII:288146-289679 2.51e-01 100 chrXIV:104625-105485 2.51e-01 100 chrXIV:715804-716639 9.96e-01 100 chrII:197286-197835 4.89e-08 27_[-1(4.94e-12)]_43 chrXVI:731604-732253 4.67e-04 4_[+2(8.33e-07)]_72 chrXIII:37471-37913 4.67e-01 100 chrIV:1354233-1355560 3.89e-01 100 chrXV:594318-594610 9.13e-01 100 chrXIII:258924-259448 3.09e-06 21_[+1(1.28e-08)]_49 chrVII:786805-788670 4.15e-01 100 chrXI:518805-521081 1.85e-01 100 chrX:378170-378270 1.59e-06 49_[+2(4.30e-10)]_27 chrVI:95474-95889 2.13e-01 100 chrXVI:214665-215141 8.55e-01 100 chrV:486983-487628 6.18e-01 100 chrXI:311893-313991 5.19e-01 100 chrXII:805777-806854 8.59e-01 100 chrXI:630505-630896 3.11e-01 100 chrXI:46588-47005 5.19e-05 36_[-2(1.60e-08)]_40 chrV:85150-87119 7.85e-01 100 chrIV:845945-846557 7.54e-01 100 chrVI:222736-223841 7.33e-01 100 chrXIII:362948-364367 8.05e-01 100 chrXIV:24120-26776 5.90e-01 100 chrII:530496-532232 6.70e-01 100 chrXII:459609-460733 6.47e-02 100 chrVII:856811-857587 2.53e-01 100 chrXI:112744-114471 9.23e-01 100 chrII:81528-83852 9.80e-02 14_[+1(8.34e-05)]_56 chrXII:975777-976099 7.91e-01 100 chrII:604197-606045 6.84e-01 100 chrV:130830-131382 1.33e-15 25_[+1(9.41e-10)]_7_[-3(1.85e-12)]_\ 9 chrXII:370524-371365 7.73e-01 100 chrIV:945641-946640 2.11e-07 21_[-3(2.79e-10)]_50 chrXII:166426-168239 3.92e-01 100 chrVI:224345-225388 7.41e-01 100 chrXVI:404475-408399 6.54e-01 100 chrV:443056-443339 8.36e-08 54_[+1(4.94e-12)]_16 chrXIV:632510-632904 2.79e-01 100 chrVII:706911-707193 9.83e-01 100 chrXII:348006-348820 9.97e-01 100 chrII:45597-46841 8.20e-01 100 chrXII:897667-899704 8.36e-01 100 chrXV:908478-908872 7.51e-02 100 chrVII:970735-973967 5.21e-01 100 chrVI:131337-131571 2.87e-02 100 chrIII:78360-78877 7.98e-02 100 chrXV:988455-989522 9.28e-01 100 chrVII:702997-706528 8.69e-01 100 chrXV:113497-113881 5.29e-01 100 chrVII:609336-610116 7.45e-01 100 chrXVI:209098-210452 6.40e-01 100 chrXII:498295-500267 7.82e-01 100 chrXVI:768945-769458 7.25e-07 55_[+1(3.94e-10)]_15 chrVIII:237110-238076 2.93e-01 100 chrV:363632-364144 6.72e-01 100 chrXI:618834-619296 8.80e-01 100 chrXVI:577104-581162 8.36e-01 100 chrXII:1038987-1041194 8.91e-01 100 chrXII:261225-262623 1.98e-01 100 chrII:504540-505054 5.71e-01 100 chrVII:959351-959649 3.00e-01 100 chrXVI:878854-880542 7.02e-03 69_[+2(2.46e-05)]_7 chrXII:1051929-1052198 6.46e-08 57_[+1(4.94e-12)]_13 chrXV:79796-80091 7.79e-01 100 chrXIII:131580-132131 1.71e-10 19_[+1(1.42e-09)]_18_[-2(3.36e-08)]_\ 9 chrIV:1401318-1401960 2.23e-01 100 chrIV:384328-385849 5.92e-01 100 chrVI:53205-55927 3.61e-01 100 chrIX:324063-324550 1.85e-05 46_[+1(1.92e-09)]_24 chrXVI:901196-902099 1.76e-01 100 chrXV:505690-506996 8.34e-01 100 chrXII:922094-923177 2.08e-01 100 chrII:547988-548820 3.36e-01 100 chrXV:409272-409949 3.21e-01 100 chrIV:331068-333140 8.38e-01 100 chrXIII:551921-553312 6.29e-01 100 chrVIII:62550-62967 9.22e-07 52_[+3(9.63e-10)]_19 chrIV:465120-470891 5.44e-03 17_[+2(9.16e-06)]_59 chrV:141057-141381 4.18e-01 100 chrVII:398614-400180 4.22e-02 100 chrXV:979247-979552 7.41e-01 100 chrXIII:731778-733571 1.23e-01 100 chrXV:854059-854792 2.11e-07 55_[+3(2.79e-10)]_16 chrX:441185-441285 3.46e-01 100 chrVII:483351-483688 1.75e-01 100 chrII:592954-593243 6.15e-01 100 chrXII:579245-580836 7.50e-01 100 chrXII:214688-215060 6.45e-07 58_[+1(2.50e-11)]_12 chrXVI:744082-744617 1.37e-05 26_[-1(2.07e-08)]_44 chrXIII:556999-557978 6.56e-01 100 chrXIV:417596-418330 7.67e-01 100 chrIV:1016956-1017533 3.40e-14 12_[+1(6.41e-11)]_7_[-3(1.42e-10)]_\ 22 chrI:202499-202747 5.88e-01 100 chrXI:379495-379926 3.56e-14 19_[+2(4.30e-10)]_20_[-1(1.89e-11)]_\ 7 chrXI:282803-284932 1.80e-02 100 chrV:53557-53943 3.39e-01 100 chrXI:464108-465103 7.11e-02 100 chrII:304697-305760 2.23e-01 100 chrIV:884840-886025 9.79e-01 100 chrIV:619735-620482 7.28e-01 100 chrVII:328398-329011 6.53e-01 100 chrX:453146-453246 7.26e-01 100 chrIV:229854-231415 3.31e-01 100 chrVII:844201-846061 3.70e-01 100 chrXIII:872726-872927 5.51e-01 100 chrVII:798524-800248 4.73e-02 100 chrXIII:425187-426618 9.49e-01 100 chrXII:1038531-1038823 3.36e-02 100 chrVIII:74803-76382 5.61e-02 100 chrII:258430-258710 2.86e-01 100 chrVII:413373-413867 8.94e-01 100 chrVIII:504079-505611 7.52e-02 100 chrIV:83337-83816 1.57e-14 21_[+2(5.18e-08)]_17_[-1(2.62e-13)]_\ 8 chrXII:374212-374705 9.28e-01 100 chrVII:876134-878130 4.70e-01 100 chrXIII:287540-287732 5.18e-01 100 chrV:396704-398054 1.73e-01 100 chrIII:123495-123781 2.13e-05 36_[-2(5.63e-08)]_40 chrIV:427601-428741 9.35e-01 100 chrXII:265611-266492 5.13e-01 100 chrXII:962826-963305 7.48e-06 16_[-2(2.32e-09)]_60 chrIV:218290-218823 7.11e-01 100 chrX:414707-414807 7.97e-12 11_[+2(4.01e-08)]_19_[-1(4.93e-11)]_\ 16 chrIV:489623-491210 7.68e-01 100 chrX:90057-90157 7.43e-01 100 chrXV:109614-110670 3.40e-01 100 chrXI:307867-308440 1.23e-07 40_[+1(1.89e-11)]_30 chrXIV:61522-62966 9.49e-01 100 chrVII:930879-931141 1.27e-05 39_[-2(5.18e-08)]_37 chrXIV:560136-560788 6.14e-01 100 chrX:355204-355304 9.62e-01 100 chrIII:236430-236651 5.28e-01 100 chrX:227713-227813 8.50e-02 100 chrIV:520729-521164 8.58e-02 100 chrII:413765-415304 6.39e-01 100 chrXVI:810585-811042 9.71e-01 100 chrV:176887-177447 1.08e-05 23_[-1(6.84e-10)]_47 chrVII:976677-977452 3.05e-02 100 chrXVI:775646-776179 9.87e-01 100 chrXV:622533-623385 2.34e-01 100 chrX:703318-703418 2.66e-01 100 chrXV:32904-33834 6.26e-01 100 chrX:204498-204598 4.32e-18 19_[+3(6.36e-15)]_7_[-1(1.92e-09)]_\ 15 chrXII:506156-507611 3.89e-01 100 chrIV:1328870-1330000 1.55e-01 100 chrVII:726455-726731 9.49e-01 100 chrXII:732013-732292 9.35e-05 58_[-1(4.70e-08)]_12 chrIII:163492-163837 4.28e-02 46_[+3(5.78e-05)]_25 chrXVI:75090-76635 1.89e-01 100 chrIV:1200962-1202350 5.25e-01 100 chrXIV:771778-772430 4.64e-03 100 chrIV:1488598-1490388 1.00e+00 100 chrVII:986770-987185 2.50e-01 100 chrX:157534-157634 6.69e-01 100 chrI:27193-27996 2.89e-01 100 chrXIII:754461-755959 5.47e-01 100 chrXIII:91090-92121 6.72e-01 100 chrXIV:495231-495890 3.73e-01 100 chrVII:323606-324143 7.84e-01 100 chrIV:1080511-1080824 7.91e-01 100 chrV:249797-250878 1.15e-14 4_[+3(1.85e-12)]_7_[-1(3.94e-10)]_\ 30 chrX:115531-115631 7.66e-01 100 chrVII:255180-255724 4.02e-01 100 chrIX:127829-130237 1.85e-01 100 chrIII:284043-286460 1.81e-01 100 chrXII:809710-815771 4.09e-01 100 chrXVI:370950-372964 2.22e-01 100 chrXII:242190-243535 4.50e-01 100 chrXV:228012-228558 9.77e-01 100 chrXII:819271-820431 2.03e-01 100 chrIII:90789-91090 2.55e-04 53_[-1(2.09e-07)]_17 chrXVI:282051-282970 2.47e-01 100 chrXI:457542-459409 7.40e-01 100 chrXV:226419-226869 1.57e-14 16_[+1(2.62e-13)]_17_[-2(5.18e-08)]_\ 13 chrXIII:511210-512062 8.29e-01 100 chrX:651287-651387 8.61e-01 100 chrIV:411003-411614 5.26e-01 100 chrXV:979710-981034 8.87e-01 100 chrX:75887-75987 4.53e-02 100 chrII:89679-90227 6.12e-01 100 chrIV:579063-580844 9.99e-01 100 chrXII:636666-639969 6.17e-01 100 chrVI:75175-76402 1.83e-01 100 chrXII:930435-931806 7.98e-01 100 chrVII:185117-185900 7.87e-01 100 chrXV:889858-891630 8.93e-01 100 chrII:478962-479578 3.83e-01 100 chrXV:724959-725851 2.68e-01 100 chrII:165104-165573 3.29e-01 100 chrV:354800-355359 4.17e-01 100 chrXIII:195938-196291 3.51e-07 3_[+1(6.84e-10)]_67 chrIII:262703-263092 6.49e-02 100 chrXIII:372182-372757 3.56e-14 25_[+1(1.89e-11)]_20_[-2(4.30e-10)]_\ 1 chrXIII:878462-880215 6.82e-01 100 chrXI:258525-259995 5.15e-01 100 chrXI:356167-356459 4.77e-01 100 chrX:196548-196648 3.50e-01 100 chrII:606205-607382 5.18e-01 100 chrXV:383020-383405 6.57e-01 100 chrIV:538838-539368 2.91e-02 57_[-1(2.33e-05)]_13 chrXVI:730776-731330 1.23e-01 100 chrIX:388091-390971 7.32e-02 100 chrXV:464292-464915 8.32e-01 100 chrX:381384-381484 6.91e-01 100 chrXI:84023-84435 1.52e-05 28_[+2(2.32e-09)]_48 chrXI:325923-327653 2.46e-02 100 chrIV:1402173-1403664 8.70e-01 100 chrII:301093-301797 5.10e-01 100 chrXII:737806-738432 9.85e-01 100 chrVIII:34354-36152 3.32e-01 100 chrXVI:692778-695024 5.86e-01 100 chrXVI:280527-281806 5.78e-01 100 chrXI:158143-159661 6.90e-02 64_[-3(5.49e-05)]_7 chrIII:168070-168532 3.13e-06 49_[+1(3.94e-10)]_21 chrIV:599773-600156 4.93e-02 43_[+1(8.09e-05)]_27 chrII:87820-88614 6.12e-01 100 chrV:223161-225072 6.77e-01 100 chrXV:1015310-1015838 1.85e-01 100 chrXII:1017517-1019323 5.46e-01 100 chrVII:364869-366720 9.89e-01 100 chrXVI:571963-572515 6.89e-01 100 chrXIII:499031-500817 7.70e-01 100 chrIX:174872-175530 9.82e-01 100 chrXVI:622189-622842 8.27e-01 100 chrXI:322450-322705 2.08e-01 100 chrXII:687664-687903 8.78e-01 100 chrII:580034-581419 8.63e-01 100 chrVII:990115-990363 8.54e-01 100 chrXVI:55817-56342 4.64e-01 100 chrV:301808-302118 9.92e-01 100 chrVII:319220-320143 5.63e-02 10_[+1(6.35e-05)]_60 chrXIII:768184-768433 1.46e-01 100 chrII:415558-415940 3.15e-01 100 chrV:434397-435137 2.14e-06 70_[-3(2.79e-10)]_1 chrXIV:87518-89965 8.56e-01 100 chrXIV:720545-723231 6.65e-01 100 chrIV:76879-77370 9.32e-02 46_[+3(4.66e-05)]_25 chrVII:779341-779699 8.49e-01 100 chrXII:440410-441686 1.24e-01 100 chrV:66939-68891 6.79e-01 100 chrVIII:173931-176088 4.36e-01 100 chrX:701760-701860 7.10e-01 100 chrIV:1161481-1162166 4.32e-01 100 chrIV:894016-894320 2.25e-01 100 chrII:591524-591817 8.49e-02 100 chrVI:221744-222161 6.36e-01 100 chrIV:1162496-1164744 3.16e-01 100 chrII:602922-603683 4.47e-01 100 chrVII:647996-648475 9.05e-01 100 chrXII:783880-784518 9.72e-01 100 chrXII:546142-547541 6.45e-01 100 chrXV:619222-621379 5.25e-01 100 chrVI:137243-137805 1.56e-09 11_[+1(2.57e-09)]_20_[-2(2.19e-07)]_\ 15 chrXIV:776600-777135 2.06e-01 100 chrXV:978817-979080 5.77e-01 100 chrXI:784-1092 7.39e-01 100 chrIV:116391-118892 9.09e-01 100 chrVIII:147622-148652 1.63e-01 100 chrXII:448454-448982 1.10e-09 18_[-3(1.85e-12)]_53 chrX:531628-531728 3.68e-09 14_[-1(2.62e-13)]_56 chrXII:198391-199762 6.41e-01 100 chrIX:393216-393769 2.39e-01 100 chrXIII:302801-303123 7.65e-01 100 chrV:438499-438981 3.56e-14 9_[+2(4.30e-10)]_20_[-1(1.89e-11)]_\ 17 chrXIII:146437-147857 4.45e-01 100 chrVII:610529-611502 3.95e-01 100 chrXVI:108783-114759 8.84e-01 100 chrIII:142077-142998 3.34e-01 100 chrXIV:499601-500770 8.04e-01 100 chrXIII:651395-652942 8.77e-01 100 chrIV:1060083-1062273 9.81e-01 100 chrX:233707-233807 9.40e-01 100 chrVI:101382-101815 4.19e-02 51_[+3(2.40e-05)]_20 chrII:452811-453873 6.25e-01 100 chrXIII:116987-118895 5.06e-02 100 chrIII:246651-247062 5.78e-01 100 chrII:9521-9995 9.92e-01 100 chrII:332308-334143 7.38e-01 100 chrXVI:191426-192794 8.81e-01 100 chrVIII:103870-105521 7.47e-01 100 chrX:651871-651971 8.94e-01 100 chrXV:904024-904688 1.20e-01 100 chrXV:87391-88591 5.53e-02 7_[-2(6.56e-05)]_69 chrXIV:401967-403010 4.88e-01 100 chrXIV:585426-586582 8.71e-01 100 chrXIII:892854-895253 6.36e-01 100 chrXI:219471-220115 6.15e-01 100 chrIX:23492-25291 6.11e-01 100 chrV:441800-442673 1.47e-01 100 chrIX:427325-428098 6.46e-01 100 chrXIII:504669-505219 1.36e-05 [+2(2.32e-09)]_76 chrXV:796981-798795 3.00e-01 100 chrXI:615736-618644 8.82e-01 100 chrXIV:501641-502796 2.94e-01 100 chrV:423132-425566 7.65e-01 100 chrIII:220417-222964 3.50e-01 100 chrXIII:480359-480903 3.25e-07 39_[+1(4.93e-11)]_31 chrXIII:168684-169021 1.03e-03 51_[-1(3.11e-07)]_19 chrXII:231930-234261 8.06e-01 100 chrXV:287205-288399 3.89e-02 100 chrXVI:645220-646159 6.19e-01 100 chrIX:138364-139169 7.48e-01 100 chrVII:828372-828981 5.85e-01 100 chrXIV:241450-242034 3.31e-01 100 chrVII:824280-827323 6.17e-01 100 chrVII:726920-729105 5.22e-01 100 chrVII:531406-531777 1.25e-02 68_[+2(9.82e-05)]_8 chrVII:56481-59141 8.33e-01 100 chrII:579234-579878 4.93e-01 100 chrIV:992689-993271 3.48e-01 100 chrV:117156-118297 4.30e-01 100 chrX:360508-360608 3.34e-01 100 chrXVI:701845-702368 8.55e-01 100 chrIX:300040-301142 2.68e-01 100 chrXII:656841-657198 6.75e-07 13_[-2(3.23e-10)]_63 chrVII:987381-987663 2.12e-01 100 chrXV:168044-168516 7.33e-01 100 chrV:469219-469987 9.99e-01 100 chrXII:241702-241936 5.00e-01 100 chrXII:855670-857717 3.09e-01 100 chrIV:359173-359789 6.13e-01 100 chrXVI:121929-125363 6.06e-01 100 chrXIV:569576-570046 1.65e-01 100 chrIV:305711-307820 5.74e-01 100 chrXV:353916-354310 6.94e-05 26_[-2(3.67e-08)]_50 chrX:390845-390945 1.96e-05 45_[-2(8.43e-08)]_31 chrVII:533524-535155 4.91e-01 100 chrIX:177651-178236 5.19e-01 100 chrXII:793728-797817 3.22e-01 100 chrIII:308637-308922 4.29e-01 100 chrVII:516361-518958 5.26e-01 100 chrV:311722-312283 1.37e-07 70_[+1(2.50e-11)] chrX:538526-538626 2.84e-06 16_[-1(4.93e-10)]_54 chrXI:141672-142941 2.41e-01 100 chrIX:197314-197818 6.46e-01 100 chrIX:255007-257129 5.83e-01 100 chrXIV:602076-602575 5.89e-08 36_[+2(5.81e-12)]_40 chrX:606005-606105 5.74e-01 100 chrXV:899929-901254 4.53e-01 100 chrXIII:19010-20564 8.12e-01 100 chrXV:977025-978326 2.99e-01 100 chrXII:92417-92724 7.39e-08 27_[+2(1.61e-09)]_49 chrIV:626477-628122 3.77e-02 6_[+2(8.44e-05)]_70 chrX:139085-139185 8.61e-01 100 chrI:71618-73921 5.79e-02 54_[+2(9.25e-05)]_22 chrXIII:161789-164369 2.02e-01 100 chrX:424288-424388 1.52e-05 38_[-2(2.32e-09)]_38 chrIV:437558-438133 2.39e-05 28_[-1(1.28e-08)]_42 chrX:120286-120386 2.55e-01 100 chrIX:182628-183858 7.56e-01 100 chrXVI:699883-700702 6.55e-02 100 chrII:88929-89499 9.77e-01 100 chrVIII:393836-395280 6.98e-01 100 chrVII:440522-441108 4.37e-05 18_[-2(8.43e-08)]_58 chrXIII:807844-808516 2.98e-01 100 chrXVI:502852-503154 8.68e-01 100 chrIV:568698-569277 4.32e-18 32_[+3(6.36e-15)]_7_[-1(1.92e-09)]_\ 2 chrXV:281680-282845 7.87e-01 100 chrXIII:759870-763153 4.54e-01 100 chrXIV:725874-726354 1.24e-03 69_[+1(2.34e-07)]_1 chrIV:768257-768824 9.19e-02 100 chrXII:710478-710888 4.67e-01 100 chrVII:345828-346737 3.63e-01 100 chrV:138478-140881 7.69e-01 100 chrVII:363671-364453 2.05e-01 100 chrIV:322199-323605 4.60e-01 100 chrII:44976-45295 7.56e-01 100 chrVII:730969-731425 1.20e-05 33_[-1(2.57e-09)]_37 chrXI:100631-106847 3.95e-01 100 chrXIII:671326-674750 3.01e-01 100 chrIV:976108-976718 6.19e-01 100 chrVII:648750-649336 2.14e-01 100 chrXI:490711-491317 6.83e-09 3_[+2(1.24e-07)]_19_[-1(1.08e-08)]_\ 24 chrXIV:63156-64535 1.91e-01 100 chrXV:622086-622371 2.31e-01 100 chrXVI:749279-751763 3.45e-01 100 chrVII:545122-546038 4.12e-01 100 chrXIV:783883-784307 6.74e-01 100 chrVII:544400-544907 5.09e-12 10_[-3(6.36e-15)]_61 chrIV:1243142-1243305 3.83e-01 100 chrIII:162074-163314 7.01e-01 100 chrVII:846894-848272 7.03e-01 100 chrII:159835-160514 5.88e-01 100 chrVII:479156-482765 1.53e-01 100 chrII:592219-592663 6.80e-01 100 chrVII:823360-823695 3.56e-14 4_[+2(4.30e-10)]_20_[-1(1.89e-11)]_\ 22 chrIX:386547-386926 2.07e-01 100 chrXVI:172929-174110 9.34e-01 100 chrIX:212447-214704 9.90e-01 100 chrIII:149728-150235 1.10e-04 30_[-1(9.31e-08)]_40 chrXII:728970-730340 6.12e-01 100 chrX:374200-374300 1.71e-10 24_[+1(1.42e-09)]_18_[-2(3.36e-08)]_\ 4 chrII:680271-682363 1.61e-01 100 chrXVI:829912-830577 3.19e-01 100 chrXIII:420321-420858 3.74e-09 48_[+1(1.89e-11)]_22 chrXV:234216-234792 2.11e-01 100 chrXV:28448-30867 1.56e-01 100 chrIV:1239370-1240395 5.36e-01 100 chrXIII:408419-409189 7.26e-01 100 chrXVI:860167-860705 5.92e-09 33_[-1(2.62e-13)]_37 chrX:391816-391916 2.40e-01 100 chrXIII:222078-223906 8.60e-01 100 chrXV:677892-679071 7.81e-01 100 chrIV:45204-46193 6.70e-01 100 chrV:69094-69311 1.58e-02 100 chrVII:738805-739508 5.53e-16 15_[+2(5.81e-12)]_20_[-1(4.94e-12)]_\ 11 chrXII:515283-516887 9.37e-02 100 chrIV:884292-884613 3.99e-07 61_[-1(1.74e-10)]_9 chrXI:364523-365250 5.02e-01 100 chrVIII:132789-133324 7.40e-06 19_[+1(1.28e-08)]_51 chrVI:63905-65340 7.63e-01 100 chrX:348841-348941 6.61e-01 100 chrXIV:229458-231596 7.88e-02 100 chrVIII:382966-383277 3.16e-01 100 chrXV:866594-868030 9.58e-01 100 chrXIV:282045-283874 6.40e-01 100 chrIV:410215-410779 4.80e-01 100 chrXI:109213-110586 5.40e-02 70_[-2(5.04e-05)]_6 chrXV:758925-759494 2.42e-01 100 chrXIII:753000-754280 4.85e-01 100 chrXII:257624-259522 1.61e-01 100 chrXI:551567-552715 5.96e-01 100 chrXI:107581-109042 2.95e-01 100 chrXIV:172555-174677 7.11e-01 100 chrXVI:193095-194652 4.60e-01 100 chrXII:628106-628638 3.64e-05 60_[+2(2.32e-09)]_16 chrXII:704327-704607 7.06e-01 100 chrXIII:408108-408262 5.32e-01 100 chrXV:841581-843221 8.46e-01 100 chrXIII:632465-634373 9.30e-01 100 chrI:65771-67892 5.66e-01 100 chrIV:434029-435099 3.08e-01 100 chrX:617686-617786 4.59e-05 47_[+2(2.61e-09)]_29 chrVIII:388679-389205 2.69e-07 [+1(6.84e-10)]_70 chrXVI:642264-643323 8.99e-01 100 chrXV:92775-94729 9.49e-01 100 chrX:123524-123624 3.68e-01 100 chrXII:611418-612038 3.64e-01 100 chrXIV:442866-444315 8.55e-01 100 chrVII:316094-317442 8.23e-02 24_[-1(7.86e-05)]_46 chrXIV:96005-96450 3.11e-07 63_[+1(3.29e-11)]_7 chrXII:711864-712726 6.40e-01 100 chrIV:381737-383896 8.72e-01 100 chrXVI:378707-378880 1.91e-01 57_[+2(9.82e-05)]_19 chrXV:340107-340647 6.41e-04 20_[-2(1.24e-07)]_56 chrXII:95551-95858 5.39e-01 100 chrXIII:306175-307140 3.94e-01 100 chrIV:1305425-1306168 3.71e-01 100 chrVII:437082-438419 3.35e-01 100 chrV:266179-268234 9.53e-01 100 chrV:461919-462167 6.53e-01 100 chrV:152111-152855 4.73e-01 100 chrIV:340450-341685 1.36e-01 100 chrV:99826-100276 8.98e-01 100 chrV:207375-207831 6.29e-01 100 chrXVI:432592-434407 5.45e-01 100 chrXI:578780-579333 7.25e-07 24_[-1(3.94e-10)]_46 chrXV:274475-274986 1.31e-04 63_[-1(4.07e-08)]_7 chrXIII:300789-302503 1.27e-01 100 chrVII:254200-254727 9.44e-01 100 chrXII:253736-255314 5.57e-01 100 chrVII:541722-542178 5.92e-01 100 chrII:413095-413309 8.61e-02 100 chrXV:896477-898438 1.19e-01 100 chrIX:68641-69841 2.07e-02 52_[-2(2.73e-05)]_24 chrVII:422903-423397 7.45e-01 100 chrXIII:861205-861534 2.41e-01 100 chrVII:438983-439902 4.58e-01 100 chrXI:21331-21796 1.18e-01 100 chrVII:700408-701152 5.05e-01 100 chrIV:1175595-1176113 2.39e-11 24_[+2(8.43e-08)]_19_[-1(8.29e-11)]_\ 3 chrXIII:378904-379622 6.60e-01 100 chrXV:961007-967789 8.14e-01 100 chrII:393027-398157 1.22e-01 100 chrXIII:586400-586895 1.23e-07 38_[+1(1.89e-11)]_32 chrXVI:718271-719491 3.83e-01 100 chrIV:1449712-1451390 9.97e-02 100 chrII:644974-645413 2.72e-13 29_[+3(8.11e-11)]_7_[-1(6.84e-10)]_\ 5 chrXIV:576698-577509 8.66e-01 100 chrVIII:126481-127814 6.99e-01 100 chrXII:712888-713593 7.39e-01 100 chrXIII:388368-388594 2.16e-02 3_[-1(2.49e-05)]_67 chrXI:611432-612363 2.39e-01 100 chrXII:932098-932454 3.73e-01 100 chrVIII:410971-411928 7.23e-01 100 chrV:491081-491424 1.98e-01 100 chrV:298846-301561 5.10e-01 100 chrIV:220708-222300 1.62e-01 100 chrVII:611854-616058 6.79e-01 100 chrXII:449239-450350 3.47e-02 73_[+2(8.44e-05)]_3 chrXIV:374731-375105 4.86e-10 [+2(3.67e-08)]_37_[-1(2.23e-08)]_9 chrVI:180598-181259 5.57e-01 100 chrVII:624781-625845 1.07e-01 100 chrV:51806-53227 9.11e-01 100 chrXII:734596-734974 3.41e-09 66_[+2(5.81e-12)]_10 chrXIV:575040-576111 9.80e-01 100 chrXVI:400435-402669 6.91e-01 100 chrVII:794228-794505 2.90e-01 100 chrXV:31361-31889 8.96e-01 100 chrV:135207-136156 6.39e-01 100 chrXII:262884-263995 4.89e-01 100 chrVIII:119699-121676 4.67e-02 100 chrXV:110836-111192 2.33e-09 34_[-3(4.23e-11)]_37 chrVII:110099-110781 5.36e-01 100 chrII:236540-237434 3.04e-01 100 chrIV:915351-916276 2.51e-01 100 chrVII:343928-345131 3.93e-01 100 chrXI:302563-303267 3.80e-02 52_[+2(4.56e-05)]_24 chrVII:205170-206118 2.64e-04 10_[-1(2.09e-07)]_60 chrV:305838-307713 2.33e-01 100 chrXVI:519800-520468 6.76e-01 100 chrX:73302-73402 1.47e-02 43_[-1(3.15e-05)]_27 chrII:59473-60445 8.89e-01 100 chrVIII:381459-382793 5.27e-01 100 chrIV:667678-668563 9.46e-01 100 chrX:156169-156269 4.29e-01 100 chrXV:300760-301745 6.72e-01 100 chrXVI:689401-689871 6.01e-04 30_[-1(6.67e-08)]_40 chrXII:282757-284048 9.19e-01 100 chrXIII:251508-252965 6.18e-01 100 chrIV:1507057-1507728 5.84e-02 100 chrII:347412-348067 4.31e-01 100 chrVIII:451188-453097 6.04e-01 100 chrIX:370262-370579 4.32e-07 52_[+3(8.11e-11)]_19 chrXII:426849-427473 4.32e-18 26_[+3(6.36e-15)]_7_[-1(1.92e-09)]_\ 8 chrXV:216316-216644 1.03e-01 100 chrXV:968071-968398 4.26e-02 37_[+2(8.18e-05)]_39 chrII:477108-477774 1.71e-02 15_[+2(9.25e-05)]_61 chrIX:354724-355528 9.43e-01 100 chrXV:391563-391943 6.81e-01 100 chrXIV:656391-661735 2.84e-01 100 chrXIV:253189-254173 8.46e-01 100 chrXIV:302610-303931 1.77e-01 100 chrII:326582-327502 5.50e-01 100 chrXIV:725348-725534 8.84e-02 100 chrXII:592378-592712 6.49e-06 23_[+1(4.70e-08)]_47 chrXIV:413535-417279 8.27e-01 100 chrXII:366003-366544 4.00e-01 100 chrIX:254270-254514 3.24e-01 100 chrIV:308070-310177 7.40e-01 100 chrIII:176776-178798 4.93e-01 100 chrIV:1351882-1353099 7.97e-12 25_[+1(4.93e-11)]_19_[-2(4.01e-08)]_\ 2 chrXVI:153602-154778 7.50e-01 100 chrII:192868-193913 4.01e-01 100 chrXV:438434-439422 4.46e-01 100 chrXV:251389-253657 5.97e-01 100 chrXII:47623-48526 3.11e-01 100 chrIV:1301542-1302597 8.61e-01 100 chrXIII:551411-551725 7.25e-01 100 chrVII:277091-277299 2.01e-01 100 chrII:405651-406321 4.32e-18 29_[+3(6.36e-15)]_7_[-1(1.92e-09)]_\ 5 chrVII:114971-115732 4.06e-01 100 chrXIV:255280-255779 1.63e-01 100 chrX:25854-25954 7.94e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************