******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--INO80/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71737-73241 1.0000 100 chrI:81920-82263 1.0000 100 chrI:138987-139333 1.0000 100 chrI:166175-166744 1.0000 100 chrII:9520-9831 1.0000 100 chrII:36239-36766 1.0000 100 chrII:45015-45308 1.0000 100 chrII:60686-61634 1.0000 100 chrII:87968-88575 1.0000 100 chrII:88976-90469 1.0000 100 chrII:167933-168168 1.0000 100 chrII:181297-181597 1.0000 100 chrII:197091-197815 1.0000 100 chrII:226981-227343 1.0000 100 chrII:236531-237354 1.0000 100 chrII:266222-266936 1.0000 100 chrII:326475-327184 1.0000 100 chrII:332343-332940 1.0000 100 chrII:347439-347975 1.0000 100 chrII:350607-350945 1.0000 100 chrII:393123-394697 1.0000 100 chrII:405652-406226 1.0000 100 chrII:415528-415947 1.0000 100 chrII:416098-416268 1.0000 100 chrII:477101-477429 1.0000 100 chrII:592944-593241 1.0000 100 chrII:604162-607130 1.0000 100 chrII:644883-645424 1.0000 100 chrIII:90796-91086 1.0000 100 chrIII:123296-123794 1.0000 100 chrIII:127543-127854 1.0000 100 chrIII:137743-139004 1.0000 100 chrIII:142681-142976 1.0000 100 chrIII:149744-150224 1.0000 100 chrIII:150917-151557 1.0000 100 chrIII:163501-163829 1.0000 100 chrIII:168117-168525 1.0000 100 chrIII:177106-178747 1.0000 100 chrIII:227777-228210 1.0000 100 chrIII:295362-295880 1.0000 100 chrIV:83279-83845 1.0000 100 chrIV:117189-118206 1.0000 100 chrIV:129188-130947 1.0000 100 chrIV:221440-222578 1.0000 100 chrIV:229126-230512 1.0000 100 chrIV:308057-309548 1.0000 100 chrIV:321421-321931 1.0000 100 chrIV:341163-341644 1.0000 100 chrIV:358096-358351 1.0000 100 chrIV:359113-359750 1.0000 100 chrIV:410235-410446 1.0000 100 chrIV:411287-411577 1.0000 100 chrIV:433596-433922 1.0000 100 chrIV:434122-435128 1.0000 100 chrIV:437561-438213 1.0000 100 chrIV:488247-488974 1.0000 100 chrIV:489635-491222 1.0000 100 chrIV:519654-521102 1.0000 100 chrIV:541185-541906 1.0000 100 chrIV:567802-569384 1.0000 100 chrIV:579108-580437 1.0000 100 chrIV:580598-580776 1.0000 100 chrIV:619750-620227 1.0000 100 chrIV:667617-668550 1.0000 100 chrIV:757478-758136 1.0000 100 chrIV:802585-802834 1.0000 100 chrIV:884295-884565 1.0000 100 chrIV:945654-946605 1.0000 100 chrIV:992673-993288 1.0000 100 chrIV:1016973-1017478 1.0000 100 chrIV:1075351-1075754 1.0000 100 chrIV:1094817-1095650 1.0000 100 chrIV:1150324-1151172 1.0000 100 chrIV:1175600-1176062 1.0000 100 chrIV:1176246-1176393 1.0000 100 chrIV:1201476-1201962 1.0000 100 chrIV:1236492-1237987 1.0000 100 chrIV:1300959-1301297 1.0000 100 chrIV:1305422-1305883 1.0000 100 chrIV:1352386-1352643 1.0000 100 chrIV:1355748-1355986 1.0000 100 chrIV:1359448-1360832 1.0000 100 chrIV:1401294-1401918 1.0000 100 chrIV:1402839-1403390 1.0000 100 chrIV:1440405-1443433 1.0000 100 chrIV:1450706-1451124 1.0000 100 chrIV:1461033-1461201 1.0000 100 chrIV:1461418-1461835 1.0000 100 chrIV:1489335-1489898 1.0000 100 chrIX:67783-68491 1.0000 100 chrIX:99686-99999 1.0000 100 chrIX:174737-175178 1.0000 100 chrIX:183298-183686 1.0000 100 chrIX:197358-197737 1.0000 100 chrIX:210665-210940 1.0000 100 chrIX:248485-248938 1.0000 100 chrIX:254275-254514 1.0000 100 chrIX:257397-258168 1.0000 100 chrIX:299838-300653 1.0000 100 chrIX:315833-316559 1.0000 100 chrIX:324195-324515 1.0000 100 chrIX:325575-326074 1.0000 100 chrIX:336022-336629 1.0000 100 chrIX:370266-370579 1.0000 100 chrIX:390270-390873 1.0000 100 chrV:51827-53304 1.0000 100 chrV:53543-54631 1.0000 100 chrV:61075-62127 1.0000 100 chrV:78055-79391 1.0000 100 chrV:85166-86243 1.0000 100 chrV:86442-86788 1.0000 100 chrV:99747-100282 1.0000 100 chrV:116749-116953 1.0000 100 chrV:117134-118272 1.0000 100 chrV:130856-131413 1.0000 100 chrV:135222-136169 1.0000 100 chrV:138479-140002 1.0000 100 chrV:140208-140855 1.0000 100 chrV:176913-177439 1.0000 100 chrV:249685-250530 1.0000 100 chrV:287494-288771 1.0000 100 chrV:305823-307484 1.0000 100 chrV:311740-312286 1.0000 100 chrV:354802-355466 1.0000 100 chrV:396185-396529 1.0000 100 chrV:423074-424284 1.0000 100 chrV:431039-432084 1.0000 100 chrV:434432-435116 1.0000 100 chrV:435298-435925 1.0000 100 chrV:438519-438979 1.0000 100 chrV:441543-442602 1.0000 100 chrV:443145-443336 1.0000 100 chrV:469171-470837 1.0000 100 chrV:485558-487677 1.0000 100 chrV:550951-551563 1.0000 100 chrVI:4584-4752 1.0000 100 chrVI:64112-65567 1.0000 100 chrVI:95491-95886 1.0000 100 chrVI:101384-101693 1.0000 100 chrVI:136957-137828 1.0000 100 chrVI:157906-158206 1.0000 100 chrVI:162070-162348 1.0000 100 chrVI:167287-167618 1.0000 100 chrVI:180375-181274 1.0000 100 chrVI:191266-191748 1.0000 100 chrVI:210312-210923 1.0000 100 chrVI:221755-222019 1.0000 100 chrVI:223348-224129 1.0000 100 chrVI:226528-226919 1.0000 100 chrVII:110049-110784 1.0000 100 chrVII:115174-115731 1.0000 100 chrVII:121945-122496 1.0000 100 chrVII:148043-149464 1.0000 100 chrVII:168764-169248 1.0000 100 chrVII:185074-185788 1.0000 100 chrVII:205022-205739 1.0000 100 chrVII:227269-228359 1.0000 100 chrVII:254148-254704 1.0000 100 chrVII:277004-278706 1.0000 100 chrVII:286885-287814 1.0000 100 chrVII:310378-312629 1.0000 100 chrVII:319246-320130 1.0000 100 chrVII:328392-328992 1.0000 100 chrVII:364887-366648 1.0000 100 chrVII:405467-406103 1.0000 100 chrVII:411858-412573 1.0000 100 chrVII:422911-423589 1.0000 100 chrVII:438614-439874 1.0000 100 chrVII:440675-441120 1.0000 100 chrVII:479130-482680 1.0000 100 chrVII:531252-531807 1.0000 100 chrVII:533837-535177 1.0000 100 chrVII:541729-542132 1.0000 100 chrVII:544417-544905 1.0000 100 chrVII:545120-546035 1.0000 100 chrVII:555189-557482 1.0000 100 chrVII:648734-649316 1.0000 100 chrVII:661554-661924 1.0000 100 chrVII:700160-701153 1.0000 100 chrVII:706955-707189 1.0000 100 chrVII:726181-726720 1.0000 100 chrVII:730966-731455 1.0000 100 chrVII:736201-736516 1.0000 100 chrVII:738533-739613 1.0000 100 chrVII:774168-774569 1.0000 100 chrVII:779377-779698 1.0000 100 chrVII:787385-788725 1.0000 100 chrVII:794092-794493 1.0000 100 chrVII:806630-807737 1.0000 100 chrVII:823358-823695 1.0000 100 chrVII:828340-828969 1.0000 100 chrVII:845264-846167 1.0000 100 chrVII:857103-857658 1.0000 100 chrVII:876143-876526 1.0000 100 chrVII:878533-879336 1.0000 100 chrVII:882788-883347 1.0000 100 chrVII:883500-883894 1.0000 100 chrVII:930899-931144 1.0000 100 chrVII:1003983-1004412 1.0000 100 chrVIII:62626-63574 1.0000 100 chrVIII:74900-75930 1.0000 100 chrVIII:103301-104866 1.0000 100 chrVIII:115979-116287 1.0000 100 chrVIII:125913-126282 1.0000 100 chrVIII:126495-127933 1.0000 100 chrVIII:132761-133370 1.0000 100 chrVIII:133583-135004 1.0000 100 chrVIII:145432-146750 1.0000 100 chrVIII:149019-149198 1.0000 100 chrVIII:175055-175323 1.0000 100 chrVIII:237766-238086 1.0000 100 chrVIII:296736-297229 1.0000 100 chrVIII:358302-359097 1.0000 100 chrVIII:381479-383656 1.0000 100 chrVIII:388659-389208 1.0000 100 chrVIII:451976-453250 1.0000 100 chrVIII:466975-467282 1.0000 100 chrVIII:475534-475900 1.0000 100 chrVIII:505865-506182 1.0000 100 chrVIII:556954-557142 1.0000 100 chrX:58702-59506 1.0000 100 chrX:73079-75675 1.0000 100 chrX:75858-76476 1.0000 100 chrX:90039-90383 1.0000 100 chrX:115755-116284 1.0000 100 chrX:139024-140101 1.0000 100 chrX:156008-157237 1.0000 100 chrX:157510-157918 1.0000 100 chrX:197252-197514 1.0000 100 chrX:204537-205012 1.0000 100 chrX:233348-233546 1.0000 100 chrX:233729-234818 1.0000 100 chrX:349045-349432 1.0000 100 chrX:354173-354566 1.0000 100 chrX:355220-355737 1.0000 100 chrX:374207-374852 1.0000 100 chrX:378146-378556 1.0000 100 chrX:390928-391317 1.0000 100 chrX:396570-397264 1.0000 100 chrX:414565-415299 1.0000 100 chrX:415679-416321 1.0000 100 chrX:422712-423253 1.0000 100 chrX:424311-424721 1.0000 100 chrX:436075-436267 1.0000 100 chrX:517488-518302 1.0000 100 chrX:523921-524433 1.0000 100 chrX:530134-532266 1.0000 100 chrX:538529-538718 1.0000 100 chrX:540813-542495 1.0000 100 chrX:542770-543742 1.0000 100 chrX:607869-608083 1.0000 100 chrX:614117-615796 1.0000 100 chrX:617704-618251 1.0000 100 chrX:651215-651563 1.0000 100 chrX:703319-703639 1.0000 100 chrXI:777-1074 1.0000 100 chrXI:46721-46986 1.0000 100 chrXI:74463-74785 1.0000 100 chrXI:84009-84392 1.0000 100 chrXI:108773-109043 1.0000 100 chrXI:140818-141481 1.0000 100 chrXI:158225-159300 1.0000 100 chrXI:162442-162652 1.0000 100 chrXI:163306-164469 1.0000 100 chrXI:282855-284455 1.0000 100 chrXI:302708-303226 1.0000 100 chrXI:307952-308537 1.0000 100 chrXI:313273-313598 1.0000 100 chrXI:326432-327572 1.0000 100 chrXI:334161-334970 1.0000 100 chrXI:379315-379911 1.0000 100 chrXI:430778-431609 1.0000 100 chrXI:457601-459742 1.0000 100 chrXI:490482-491337 1.0000 100 chrXI:512931-513513 1.0000 100 chrXI:517806-518057 1.0000 100 chrXI:578607-579437 1.0000 100 chrXI:617984-619266 1.0000 100 chrXII:47853-49202 1.0000 100 chrXII:64279-65416 1.0000 100 chrXII:92477-92660 1.0000 100 chrXII:151066-151376 1.0000 100 chrXII:167740-168219 1.0000 100 chrXII:198327-199735 1.0000 100 chrXII:201737-202719 1.0000 100 chrXII:214682-215059 1.0000 100 chrXII:231821-234216 1.0000 100 chrXII:241596-241964 1.0000 100 chrXII:282815-283613 1.0000 100 chrXII:366051-366545 1.0000 100 chrXII:374208-374669 1.0000 100 chrXII:426929-427508 1.0000 100 chrXII:448523-448915 1.0000 100 chrXII:459650-460268 1.0000 100 chrXII:460441-460671 1.0000 100 chrXII:498262-500208 1.0000 100 chrXII:506283-506452 1.0000 100 chrXII:506686-507578 1.0000 100 chrXII:592378-592717 1.0000 100 chrXII:605165-605605 1.0000 100 chrXII:628229-628613 1.0000 100 chrXII:636708-639950 1.0000 100 chrXII:656859-657166 1.0000 100 chrXII:673507-675126 1.0000 100 chrXII:712274-712647 1.0000 100 chrXII:713147-713568 1.0000 100 chrXII:732016-732297 1.0000 100 chrXII:734637-734934 1.0000 100 chrXII:780929-781891 1.0000 100 chrXII:783998-784510 1.0000 100 chrXII:793740-795373 1.0000 100 chrXII:796309-796824 1.0000 100 chrXII:797023-797461 1.0000 100 chrXII:818507-818711 1.0000 100 chrXII:819894-820321 1.0000 100 chrXII:855992-857294 1.0000 100 chrXII:875259-876078 1.0000 100 chrXII:897681-899611 1.0000 100 chrXII:922122-922880 1.0000 100 chrXII:932110-932512 1.0000 100 chrXII:962415-962603 1.0000 100 chrXII:962824-963375 1.0000 100 chrXII:975805-976087 1.0000 100 chrXII:1017047-1019360 1.0000 100 chrXII:1028204-1028544 1.0000 100 chrXII:1029308-1029905 1.0000 100 chrXII:1051952-1052212 1.0000 100 chrXIII:91559-92095 1.0000 100 chrXIII:131229-132071 1.0000 100 chrXIII:145708-146234 1.0000 100 chrXIII:146436-147203 1.0000 100 chrXIII:162658-164332 1.0000 100 chrXIII:168693-169010 1.0000 100 chrXIII:195954-196294 1.0000 100 chrXIII:223003-223933 1.0000 100 chrXIII:225165-226693 1.0000 100 chrXIII:259001-259458 1.0000 100 chrXIII:290583-291103 1.0000 100 chrXIII:296736-298940 1.0000 100 chrXIII:321035-321327 1.0000 100 chrXIII:352101-352649 1.0000 100 chrXIII:362955-363761 1.0000 100 chrXIII:372174-372741 1.0000 100 chrXIII:378772-379592 1.0000 100 chrXIII:420329-420783 1.0000 100 chrXIII:463438-463855 1.0000 100 chrXIII:480367-480896 1.0000 100 chrXIII:504699-505168 1.0000 100 chrXIII:551416-552905 1.0000 100 chrXIII:572329-573257 1.0000 100 chrXIII:573405-573802 1.0000 100 chrXIII:586415-587405 1.0000 100 chrXIII:626040-626671 1.0000 100 chrXIII:731434-733354 1.0000 100 chrXIII:747787-748114 1.0000 100 chrXIII:754471-756115 1.0000 100 chrXIII:767831-768434 1.0000 100 chrXIII:808086-808506 1.0000 100 chrXIII:837726-838364 1.0000 100 chrXIII:887027-887958 1.0000 100 chrXIV:63158-64477 1.0000 100 chrXIV:95961-96455 1.0000 100 chrXIV:102580-103005 1.0000 100 chrXIV:104607-105314 1.0000 100 chrXIV:173533-174609 1.0000 100 chrXIV:241412-241800 1.0000 100 chrXIV:302655-304334 1.0000 100 chrXIV:330478-331052 1.0000 100 chrXIV:374638-375100 1.0000 100 chrXIV:442867-444321 1.0000 100 chrXIV:444513-445138 1.0000 100 chrXIV:495228-495698 1.0000 100 chrXIV:546523-547597 1.0000 100 chrXIV:560081-560782 1.0000 100 chrXIV:568056-568555 1.0000 100 chrXIV:569555-570028 1.0000 100 chrXIV:575026-576091 1.0000 100 chrXIV:576667-577612 1.0000 100 chrXIV:585527-586286 1.0000 100 chrXIV:602075-602568 1.0000 100 chrXIV:631517-632010 1.0000 100 chrXIV:632501-632899 1.0000 100 chrXIV:725654-726346 1.0000 100 chrXIV:783903-784314 1.0000 100 chrXV:79743-80102 1.0000 100 chrXV:80333-81158 1.0000 100 chrXV:92698-94768 1.0000 100 chrXV:110137-110669 1.0000 100 chrXV:110875-111177 1.0000 100 chrXV:113438-113871 1.0000 100 chrXV:161152-161728 1.0000 100 chrXV:168020-168439 1.0000 100 chrXV:216305-216669 1.0000 100 chrXV:226592-226861 1.0000 100 chrXV:227988-228583 1.0000 100 chrXV:274495-275000 1.0000 100 chrXV:281842-283013 1.0000 100 chrXV:288093-288402 1.0000 100 chrXV:300354-301296 1.0000 100 chrXV:340130-340720 1.0000 100 chrXV:353927-354275 1.0000 100 chrXV:438448-439007 1.0000 100 chrXV:444607-446151 1.0000 100 chrXV:464280-465446 1.0000 100 chrXV:505057-505470 1.0000 100 chrXV:571408-572137 1.0000 100 chrXV:594321-594608 1.0000 100 chrXV:663352-664791 1.0000 100 chrXV:678224-679339 1.0000 100 chrXV:710082-710898 1.0000 100 chrXV:723190-724571 1.0000 100 chrXV:779772-780980 1.0000 100 chrXV:797933-799029 1.0000 100 chrXV:854001-854752 1.0000 100 chrXV:866562-867297 1.0000 100 chrXV:899823-900073 1.0000 100 chrXV:900224-901257 1.0000 100 chrXV:976386-976683 1.0000 100 chrXV:978883-979102 1.0000 100 chrXV:979752-981460 1.0000 100 chrXV:1003916-1004985 1.0000 100 chrXV:1025718-1026569 1.0000 100 chrXV:1027835-1029638 1.0000 100 chrXVI:55848-56346 1.0000 100 chrXVI:75615-76707 1.0000 100 chrXVI:77187-77339 1.0000 100 chrXVI:173043-173975 1.0000 100 chrXVI:188334-189208 1.0000 100 chrXVI:194152-194647 1.0000 100 chrXVI:208031-211118 1.0000 100 chrXVI:302688-302897 1.0000 100 chrXVI:303090-304020 1.0000 100 chrXVI:338696-339191 1.0000 100 chrXVI:354174-355302 1.0000 100 chrXVI:378707-378969 1.0000 100 chrXVI:404917-408363 1.0000 100 chrXVI:432531-434402 1.0000 100 chrXVI:435656-436189 1.0000 100 chrXVI:520193-520497 1.0000 100 chrXVI:559551-560439 1.0000 100 chrXVI:571683-572505 1.0000 100 chrXVI:581876-582459 1.0000 100 chrXVI:622016-622811 1.0000 100 chrXVI:689327-689881 1.0000 100 chrXVI:699884-700666 1.0000 100 chrXVI:731965-732264 1.0000 100 chrXVI:744052-744650 1.0000 100 chrXVI:769026-769463 1.0000 100 chrXVI:775665-776034 1.0000 100 chrXVI:786409-787465 1.0000 100 chrXVI:794480-794758 1.0000 100 chrXVI:795357-796194 1.0000 100 chrXVI:810584-810837 1.0000 100 chrXVI:819352-820268 1.0000 100 chrXVI:821652-822076 1.0000 100 chrXVI:860151-860669 1.0000 100 chrXVI:880043-880511 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--INO80/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--INO80/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--INO80/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 457 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 45700 N= 457 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.307 C 0.193 G 0.193 T 0.307 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--INO80/background): A 0.314 C 0.186 G 0.186 T 0.314 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAAYGMCCMCDVSGGGRNTCGAACC MEME-1 width = 30 sites = 63 llr = 1190 E-value = 1.4e-223 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAAYGMCCMCDVSGGGRNTCGAACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 989886761:2:22234122:73:::aa:: pos.-specific C :::::1::5:56545:343:::2:7:::a7 probability G 1:111111:72112233467a33::a:::: matrix T :1::123342131214:2::::2a2::::2 bits 2.4 * 2.2 * * * 1.9 * * * 1.7 * * * ** Relative 1.5 * * **** Entropy 1.2 * * ******* (27.3 bits) 1.0 ***** * *** ******* 0.7 ***** ** * **** ******* 0.5 ***** **** * * ****** ******* 0.2 ********************** ******* 0.0 ------------------------------ Multilevel AAAAAAAACGCCCCCTACGGGAATCGAACC consensus TTTTTATAAGACGCA GG T sequence GG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGMCCMCDVSGGGRNTCGAACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:463438-463855 - 8 2.03e-12 CTGGTCTGAT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCT chrX:204537-205012 - 61 2.03e-12 TCAAGGGCCA AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrIX:336022-336629 + 66 2.03e-12 CAGTTATGGT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGAT chrXIII:480367-480896 + 32 3.68e-12 TGAATCTTCA AAAAAAGAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrV:550951-551563 + 70 3.68e-12 TACGATTTTC AAAAAAATTGGTCTCTAGCGGGATCGAACC G chrXII:1051952-1052212 + 31 4.25e-12 TTAAAGTAAA AAAAATAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrV:443145-443336 + 4 4.25e-12 CAA AAAAAATATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXII:167740-168219 + 7 4.91e-12 AAAAGA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrIX:299838-300653 + 25 4.91e-12 TGAAAATGGT AAAAAGATAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrIV:1016973-1017478 + 24 4.91e-12 TAGAAAATAA AAAAGAAACTCCGAAGCGGGGAGTCGAACC CCGGTCTCCA chrII:226981-227343 - 23 4.91e-12 TTACTGTCCA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXII:426929-427508 - 14 7.49e-12 TAGAAGCTTA AAAAAATTCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXVI:880043-880511 + 61 1.30e-11 AAAGAAAGAA AAAAGAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXIII:290583-291103 - 58 1.48e-11 ATTTCTTCAA AAAGAAAACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXII:374208-374669 - 18 1.69e-11 TTGTCGGAGC AAAAAAATCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrVII:845264-846167 - 33 1.93e-11 TGGGGATGGA AAAAACATTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXIV:632501-632899 - 1 2.20e-11 CTGAAATAAG AAAAAAAACGACCCCAGTGAGGGTTGAACT chrV:176913-177439 - 23 2.20e-11 GTAGCCATCA AAAAAGTACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXV:438448-439007 - 40 3.68e-11 ACTGACAAAA ATAAAGAACTCCTCATAGGGGGCTCGAACC CCTGACATTT chrXII:214682-215059 + 55 8.69e-11 ATAAAAGTAA AAAATAAATGGACGCAACCGGAATCGAACC GATGACCTCT chrXII:732016-732297 - 63 9.79e-11 AAAAAGCA AAAAATAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrXII:592378-592717 + 14 9.79e-11 GCAAAAAACA AAAAATAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrX:617704-618251 - 71 9.79e-11 . AAAAATAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrIX:325575-326074 - 25 1.10e-10 CTTTCAAAGA AAAAAAATTGCTTCCAATCGGATTTGAACC GATGATCTCC chrVI:226528-226919 + 7 1.24e-10 GAAAAA AAGAGATAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrVIII:132761-133370 + 3 1.75e-10 AA AAAATTATCGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXVI:810584-810837 - 68 1.97e-10 AGT AAAAATTACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrX:538529-538718 - 32 1.97e-10 AAAAAAAAAA ATAATCAACGTTCCGTACGGGACTCGAACC CGCAGTCTTC chrXIV:102580-103005 - 26 2.46e-10 AAATACAAAA AAAATAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXVI:769026-769463 + 5 3.83e-10 AAAA GTAAAGAACTCCTCATAGGGGGCTCGAACC CCTGACATTT chrXII:797023-797461 - 36 3.83e-10 AAAAAATATT AAATATATCTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXI:578607-579437 - 67 3.83e-10 AAAA GTAAAGAACTCCTCATAGGGGGCTCGAACC CCTGACATTT chrXVI:689327-689881 - 71 4.75e-10 . AAATAATACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrIV:619750-620227 + 23 4.75e-10 GAAAAATGTA TAAAAAATCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrVII:541729-542132 - 20 5.88e-10 GAGGTAAGAA AAAGAACACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrIV:802585-802834 + 64 6.54e-10 TAGAGTAAAA ATAAAAAGAGGTCCTACCCGGATTCGAACC GGGGTTG chrXVI:435656-436189 + 13 8.06e-10 TTCTTTGGAA AAAAAGAAAGCTCGCACTCAGGATCGAACT AAGGACCAAC chrXVI:860151-860669 - 68 8.94e-10 AAA ATAAAATCTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrV:438519-438979 - 53 9.90e-10 GTTTTCGAAA AAAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXV:274495-275000 - 55 1.10e-09 ATTCACAAAA AAGAAATGCGTCACAGACAGGATTCGAACC TGCGCAGGTA chrVI:191266-191748 + 48 1.10e-09 AAATTTAAAA AAGAAATGCGTCACAGACAGGATTCGAACC TGCGCAGGTA chrX:374207-374852 + 19 1.34e-09 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrII:405652-406226 - 39 1.34e-09 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrXI:313273-313598 + 8 1.64e-09 AGGAAAA AAATAAAATGCCATCTCCTAGAATCGAACC AGGGTTTCAT chrXV:288093-288402 - 62 1.81e-09 GCAAAAGTA AAAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrXIII:168693-169010 - 61 1.81e-09 AAAAAGGGAA AAAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrVI:210312-210923 + 44 1.81e-09 AAATTTCAGA AAAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrXVI:744052-744650 - 33 1.99e-09 ACTTTAGGGA AAAAATTTTGCCACCTGTCAGAATTGAACT AACGACCTTT chrVII:286885-287814 + 43 2.42e-09 CACTTGCAGT ATAAAAAATGAAACGGACAGGAATTGAACC TGCAACCCTT chrXIII:321035-321327 + 8 2.66e-09 CAAAAAA ATAAAAAATGGACGAGTCCGGAATCGAACC GGAGACCTCT chrIII:90796-91086 - 60 3.22e-09 TGTTGAGGAA AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrVII:730966-731455 - 29 3.54e-09 CTCATTTCAA GCAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrIII:168117-168525 + 22 5.62e-09 AAATCTGTAT TCAAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrII:326475-327184 + 5 6.15e-09 AAAT AAAGAGTTTGATCCAACCGAGGTTCGAACT CGGGATCTTC chrXIII:372174-372741 + 30 6.73e-09 GCTAAAGTGC TAAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXI:457601-459742 - 28 1.48e-08 ATAAAAAAAT ATAAAATATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrVII:857103-857658 + 40 3.65e-08 TATTGAAAAA AAAATTATTGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrXIII:352101-352649 - 24 2.84e-07 AAAGTAAAAA AAAATTAATGCGAATTCTGTGGATCGAACA CAGGACCTCC chrXIII:195954-196294 + 51 1.02e-06 CCTGTTTAAT CAGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrXII:92477-92660 - 46 1.02e-06 CCTGTTTAGT CAGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrX:517488-518302 - 18 1.29e-06 AAATATTCAT AAAAGTTAAGCGCCGTGGCGCAGTGGAAGC GCGCAGGGCT chrIV:884295-884565 + 71 2.86e-06 ACAGGCCTTT AAAAGCAACGCGACCGTCGTGGGTTCAAAC chrXII:962415-962603 - 58 1.43e-05 GCCAGTTGTC GACAACGATGCCCGGTGAATGAATAGTACC TCCAATGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGMCCMCDVSGGGRNTCGAACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:463438-463855 2e-12 7_[-1]_63 chrX:204537-205012 2e-12 60_[-1]_10 chrIX:336022-336629 2e-12 65_[+1]_5 chrXIII:480367-480896 3.7e-12 31_[+1]_39 chrV:550951-551563 3.7e-12 69_[+1]_1 chrXII:1051952-1052212 4.3e-12 30_[+1]_40 chrV:443145-443336 4.3e-12 3_[+1]_67 chrXII:167740-168219 4.9e-12 6_[+1]_64 chrIX:299838-300653 4.9e-12 24_[+1]_46 chrIV:1016973-1017478 4.9e-12 23_[+1]_47 chrII:226981-227343 4.9e-12 22_[-1]_48 chrXII:426929-427508 7.5e-12 13_[-1]_57 chrXVI:880043-880511 1.3e-11 60_[+1]_10 chrXIII:290583-291103 1.5e-11 57_[-1]_13 chrXII:374208-374669 1.7e-11 17_[-1]_53 chrVII:845264-846167 1.9e-11 32_[-1]_38 chrXIV:632501-632899 2.2e-11 [-1]_70 chrV:176913-177439 2.2e-11 22_[-1]_48 chrXV:438448-439007 3.7e-11 39_[-1]_31 chrXII:214682-215059 8.7e-11 54_[+1]_16 chrXII:732016-732297 9.8e-11 62_[-1]_8 chrXII:592378-592717 9.8e-11 13_[+1]_57 chrX:617704-618251 9.8e-11 70_[-1] chrIX:325575-326074 1.1e-10 24_[-1]_46 chrVI:226528-226919 1.2e-10 6_[+1]_64 chrVIII:132761-133370 1.8e-10 2_[+1]_68 chrXVI:810584-810837 2e-10 67_[-1]_3 chrX:538529-538718 2e-10 31_[-1]_39 chrXIV:102580-103005 2.5e-10 25_[-1]_45 chrXVI:769026-769463 3.8e-10 4_[+1]_66 chrXII:797023-797461 3.8e-10 35_[-1]_35 chrXI:578607-579437 3.8e-10 66_[-1]_4 chrXVI:689327-689881 4.8e-10 70_[-1] chrIV:619750-620227 4.8e-10 22_[+1]_48 chrVII:541729-542132 5.9e-10 19_[-1]_51 chrIV:802585-802834 6.5e-10 63_[+1]_7 chrXVI:435656-436189 8.1e-10 12_[+1]_58 chrXVI:860151-860669 8.9e-10 67_[-1]_3 chrV:438519-438979 9.9e-10 52_[-1]_18 chrXV:274495-275000 1.1e-09 54_[-1]_16 chrVI:191266-191748 1.1e-09 47_[+1]_23 chrX:374207-374852 1.3e-09 18_[+1]_52 chrII:405652-406226 1.3e-09 38_[-1]_32 chrXI:313273-313598 1.6e-09 7_[+1]_63 chrXV:288093-288402 1.8e-09 61_[-1]_9 chrXIII:168693-169010 1.8e-09 60_[-1]_10 chrVI:210312-210923 1.8e-09 43_[+1]_27 chrXVI:744052-744650 2e-09 32_[-1]_38 chrVII:286885-287814 2.4e-09 42_[+1]_28 chrXIII:321035-321327 2.7e-09 7_[+1]_63 chrIII:90796-91086 3.2e-09 59_[-1]_11 chrVII:730966-731455 3.5e-09 28_[-1]_42 chrIII:168117-168525 5.6e-09 21_[+1]_49 chrII:326475-327184 6.2e-09 4_[+1]_66 chrXIII:372174-372741 6.7e-09 29_[+1]_41 chrXI:457601-459742 1.5e-08 27_[-1]_43 chrVII:857103-857658 3.6e-08 39_[+1]_31 chrXIII:352101-352649 2.8e-07 23_[-1]_47 chrXIII:195954-196294 1e-06 50_[+1]_20 chrXII:92477-92660 1e-06 45_[-1]_25 chrX:517488-518302 1.3e-06 17_[-1]_53 chrIV:884295-884565 2.9e-06 70_[+1] chrXII:962415-962603 1.4e-05 57_[-1]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGMCCMCDVSGGGRNTCGAACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAAYGMCCMCDVSGGGRNTCGAACC width=30 seqs=63 chrXIII:463438-463855 ( 8) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrX:204537-205012 ( 61) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrIX:336022-336629 ( 66) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXIII:480367-480896 ( 32) AAAAAAGAAGCCCTGTAGGGGGCTCGAACC 1 chrV:550951-551563 ( 70) AAAAAAATTGGTCTCTAGCGGGATCGAACC 1 chrXII:1051952-1052212 ( 31) AAAAATAATGGTCTCTAGCGGGATCGAACC 1 chrV:443145-443336 ( 4) AAAAAATATGGTCTCTAGCGGGATCGAACC 1 chrXII:167740-168219 ( 7) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrIX:299838-300653 ( 25) AAAAAGATAGCCCTGTAGGGGGCTCGAACC 1 chrIV:1016973-1017478 ( 24) AAAAGAAACTCCGAAGCGGGGAGTCGAACC 1 chrII:226981-227343 ( 23) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrXII:426929-427508 ( 14) AAAAAATTCTCCGCGACGGGGAATTGAACC 1 chrXVI:880043-880511 ( 61) AAAAGAAATGGTCTCTAGCGGGATCGAACC 1 chrXIII:290583-291103 ( 58) AAAGAAAACTCCGATACGGGGAGTCGAACC 1 chrXII:374208-374669 ( 18) AAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrVII:845264-846167 ( 33) AAAAACATTGCGCAAGCCCGGAATCGAACC 1 chrXIV:632501-632899 ( 1) AAAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrV:176913-177439 ( 23) AAAAAGTACTCCGATACGGGGAGTCGAACC 1 chrXV:438448-439007 ( 40) ATAAAGAACTCCTCATAGGGGGCTCGAACC 1 chrXII:214682-215059 ( 55) AAAATAAATGGACGCAACCGGAATCGAACC 1 chrXII:732016-732297 ( 63) AAAAATAATGAGAGCTAAGGGATTCGAACC 1 chrXII:592378-592717 ( 14) AAAAATAATGAGAGCTAAGGGATTCGAACC 1 chrX:617704-618251 ( 71) AAAAATAATGAGAGCTAAGGGATTCGAACC 1 chrIX:325575-326074 ( 25) AAAAAAATTGCTTCCAATCGGATTTGAACC 1 chrVI:226528-226919 ( 7) AAGAGATAAGCCCTGTAGGGGGCTCGAACC 1 chrVIII:132761-133370 ( 3) AAAATTATCGACAACTGCAGGACTCGAACC 1 chrXVI:810584-810837 ( 68) AAAAATTACGACCCCAGTGAGGGTTGAACT 1 chrX:538529-538718 ( 32) ATAATCAACGTTCCGTACGGGACTCGAACC 1 chrXIV:102580-103005 ( 26) AAAATAAACGACCCCAGTGAGGGTTGAACT 1 chrXVI:769026-769463 ( 5) GTAAAGAACTCCTCATAGGGGGCTCGAACC 1 chrXII:797023-797461 ( 36) AAATATATCTCCGATACGGGGAGTCGAACC 1 chrXI:578607-579437 ( 67) GTAAAGAACTCCTCATAGGGGGCTCGAACC 1 chrXVI:689327-689881 ( 71) AAATAATACGACACCAGCAGGATTTGAACC 1 chrIV:619750-620227 ( 23) TAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrVII:541729-542132 ( 20) AAAGAACACTCCGATACGGGGAGTCGAACC 1 chrIV:802585-802834 ( 64) ATAAAAAGAGGTCCTACCCGGATTCGAACC 1 chrXVI:435656-436189 ( 13) AAAAAGAAAGCTCGCACTCAGGATCGAACT 1 chrXVI:860151-860669 ( 68) ATAAAATCTGCGCAAGCCCGGAATCGAACC 1 chrV:438519-438979 ( 53) AAAAAAATTGATTTCGCCCAGGATCGAACT 1 chrXV:274495-275000 ( 55) AAGAAATGCGTCACAGACAGGATTCGAACC 1 chrVI:191266-191748 ( 48) AAGAAATGCGTCACAGACAGGATTCGAACC 1 chrX:374207-374852 ( 19) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrII:405652-406226 ( 39) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrXI:313273-313598 ( 8) AAATAAAATGCCATCTCCTAGAATCGAACC 1 chrXV:288093-288402 ( 62) AAAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrXIII:168693-169010 ( 61) AAAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrVI:210312-210923 ( 44) AAAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrXVI:744052-744650 ( 33) AAAAATTTTGCCACCTGTCAGAATTGAACT 1 chrVII:286885-287814 ( 43) ATAAAAAATGAAACGGACAGGAATTGAACC 1 chrXIII:321035-321327 ( 8) ATAAAAAATGGACGAGTCCGGAATCGAACC 1 chrIII:90796-91086 ( 60) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrVII:730966-731455 ( 29) GCAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrIII:168117-168525 ( 22) TCAAAAAAAGGTCCTACCCGGATTCGAACC 1 chrII:326475-327184 ( 5) AAAGAGTTTGATCCAACCGAGGTTCGAACT 1 chrXIII:372174-372741 ( 30) TAAAAAAATGATTTCGCCCAGGATCGAACT 1 chrXI:457601-459742 ( 28) ATAAAATATGGTTGCTAAGAGATTCGAACT 1 chrVII:857103-857658 ( 40) AAAATTATTGGTTGCTAAGAGATTCGAACT 1 chrXIII:352101-352649 ( 24) AAAATTAATGCGAATTCTGTGGATCGAACA 1 chrXIII:195954-196294 ( 51) CAGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrXII:92477-92660 ( 46) CAGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrX:517488-518302 ( 18) AAAAGTTAAGCGCCGTGGCGCAGTGGAAGC 1 chrIV:884295-884565 ( 71) AAAAGCAACGCGACCGTCGTGGGTTCAAAC 1 chrXII:962415-962603 ( 58) GACAACGATGCCCGGTGAATGAATAGTACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGMCCMCDVSGGGRNTCGAACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 32447 bayes= 6.40588 E= 1.4e-223 145 -255 -155 -272 139 -255 -1262 -114 153 -355 -123 -1262 142 -255 -123 -272 139 -1262 -123 -172 94 -155 -74 -50 109 -355 -155 -31 98 -355 -123 -14 -150 136 -1262 39 -330 -197 191 -50 -40 131 -9 -131 -272 158 -55 -22 -50 140 -38 -114 -40 126 -23 -98 -72 136 26 -150 9 -1262 54 34 28 84 45 -330 -150 97 97 -98 -98 45 162 -430 -40 -197 184 -272 -1262 -355 240 -1262 105 -1262 91 -1262 15 3 45 -61 -1262 -1262 -1262 167 -430 197 -355 -40 -330 -355 236 -1262 160 -1262 -1262 -272 167 -1262 -1262 -1262 -430 238 -355 -1262 -430 200 -197 -72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGMCCMCDVSGGGRNTCGAACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 63 E= 1.4e-223 0.857143 0.031746 0.063492 0.047619 0.825397 0.031746 0.000000 0.142857 0.904762 0.015873 0.079365 0.000000 0.841270 0.031746 0.079365 0.047619 0.825397 0.000000 0.079365 0.095238 0.603175 0.063492 0.111111 0.222222 0.666667 0.015873 0.063492 0.253968 0.619048 0.015873 0.079365 0.285714 0.111111 0.476190 0.000000 0.412698 0.031746 0.047619 0.698413 0.222222 0.238095 0.460317 0.174603 0.126984 0.047619 0.555556 0.126984 0.269841 0.222222 0.492063 0.142857 0.142857 0.238095 0.444444 0.158730 0.158730 0.190476 0.476190 0.222222 0.111111 0.333333 0.000000 0.269841 0.396825 0.380952 0.333333 0.253968 0.031746 0.111111 0.365079 0.365079 0.158730 0.158730 0.253968 0.571429 0.015873 0.238095 0.047619 0.666667 0.047619 0.000000 0.015873 0.984127 0.000000 0.650794 0.000000 0.349206 0.000000 0.349206 0.190476 0.253968 0.206349 0.000000 0.000000 0.000000 1.000000 0.015873 0.730159 0.015873 0.238095 0.031746 0.015873 0.952381 0.000000 0.952381 0.000000 0.000000 0.047619 1.000000 0.000000 0.000000 0.000000 0.015873 0.968254 0.015873 0.000000 0.015873 0.746032 0.047619 0.190476 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGMCCMCDVSGGGRNTCGAACC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAA[AT][AT][AT][CT][GT][CA][CT][CA][CA][CG][TAG][ACG][CG][GC][GA]G[AG][AGT]T[CT]GAACC -------------------------------------------------------------------------------- Time 198.73 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCYTTWMCCACTVSGCCAHRNRASCW MEME-2 width = 27 sites = 54 llr = 966 E-value = 5.2e-163 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCYTTWMCCACTVSGCCAHRNRASCW MEME-2 Description -------------------------------------------------------------------------------- Simplified A 211:1365:2a::422::a44235::5 pos.-specific C 447331:4a6:9:23:a8:413125a: probability G 45121:11:1:::358::::43524:1 matrix T :115663::1:1a1:::2:2121:1:4 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * ** * * * Relative 1.5 * *** **** * Entropy 1.2 * *** **** ** (25.8 bits) 1.0 ** * *** **** ** 0.7 *** ****** ***** ** 0.5 **** * ****** ***** **** 0.2 *************************** 0.0 --------------------------- Multilevel CGCTTTAACCACTAGGCCAAGCGACCA consensus GC CCATC A GCA T CAGAGG T sequence G CA T T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTTWMCCACTVSGCCAHRNRASCW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chrXII:656859-657166 + 19 2.83e-12 GCTAAGGGAG CGCGCTACCGACTACGCCACACGCCCA ATTTTCTTGT chrVII:774168-774569 - 30 2.83e-12 GCTAAGGGAG CGCGCTACCGACTACGCCACACGCCCA ATTAATTGAT chrX:197252-197514 + 27 4.12e-12 GCTAAGGGAG CGCGCTACCGACTACGCCACACGCCCT AATATTATTG chrXIV:602075-602568 - 40 5.93e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGACCA TTGTTATCTG chrXII:734637-734934 - 66 5.93e-12 AGCACGGT GCCTTAACCAACTGGGCCAAGAGACCA AACTTTGTTG chrV:443145-443336 + 60 5.93e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGACCA AATTTTAATG chrIX:183298-183686 + 46 5.93e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGACCA GGAATTTGTT chrIV:667617-668550 + 22 5.93e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGACCA ATTTGGATCG chrXIII:259001-259458 + 35 1.00e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTGCCA TACTAACTTG chrXII:167740-168219 + 71 1.00e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTGCCA TAT chrVIII:132761-133370 + 67 1.00e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTGCCA CTTATTA chrV:86442-86788 - 38 1.00e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTGCCA TAACTCATTG chrIV:1305422-1305883 - 27 1.41e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTGCCT TAATTTGTAT chrXIII:321035-321327 + 63 1.95e-11 GCTAAGGGAG CGCGCTACCGACTACGCCACACGCCCG ATTTGTATTG chrXII:605165-605605 + 72 8.91e-11 ATAAGCACGA AGCTCTAACCACTGAGCTACACGAGCA TT chrXV:353927-354275 + 37 1.36e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCATAGAAGCA GTAAACCGTT chrVIII:115979-116287 + 71 1.78e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCATAGAAGCT CTA chrXVI:689327-689881 - 10 3.00e-10 TCAAGTCTGT CGCCTTAACCACTCGGCCATAGTGCCC AAAATAATC chrXIII:504699-505168 - 11 1.13e-09 TGAATCAGGC GCCTTAGACCGCTCGGCCAAACAACCA CTTATCTGTT chrXII:628229-628613 - 11 1.13e-09 TGAATCAGGC GCCTTAGACCGCTCGGCCAAACAACCA CTTATTTGTT chrVII:700160-701153 - 68 1.27e-09 CCTGAC GCCTTAGACCACTCGGCCAGAGTACCA ATTCATCTGT chrVII:823358-823695 - 5 3.32e-09 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACCA CTCT chrX:378146-378556 - 58 4.06e-09 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACCT ATTAATTTAT chrVI:226528-226919 + 62 4.48e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAGGCA TTTTAATCTC chrIII:127543-127854 - 67 4.95e-09 GTCGCAC GCCTTAACCAACTTGGCCATGGAGTCA TTTTATCTTG chrXI:84009-84392 - 57 5.45e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAACCCTCCA TACAAATTTT chrX:424311-424721 + 24 5.45e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAACCCTCCA TCTTATTTAA chrIV:1352386-1352643 + 49 5.45e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAGGCT ATTTCGTTGG chrXI:74463-74785 - 49 6.01e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCATGGAGTCT AATTGCTATA chrX:422712-423253 - 4 6.01e-09 ATGAGACTGA CGCTCTTCCTACTGAGCTACTGAAGCA TAC chrX:390928-391317 + 18 6.01e-09 ATGAGACTGA CGCTCTTCCTACTGAGCTACTGAAGCA CTATTTCTTG chrIV:1175600-1176062 - 47 7.26e-09 ATGAGACTGA CGCTCTTCCTACTGAGCTACTGAAGCT TTGTTTTGTA chrXIII:747787-748114 + 38 9.59e-09 TAGAAGTCAG ACGCGTTGCCATTACGCCACGCGAGCT AGTCATATGT chrXI:162442-162652 + 36 9.59e-09 TAGAAGTCAG ACGCGTTGCCATTACGCCACGCGAGCT AATATTTGTT chrX:374207-374852 + 73 9.59e-09 TAGAAGTCAG ACGCGTTGCCATTACGCCACGCGAGCT A chrVII:736201-736516 - 31 9.59e-09 TAGAAGTCAG ACGCGTTGCCATTACGCCACGCGAGCT ATTGAAATTA chrXVI:860151-860669 - 18 1.05e-08 TGGCAACGTT GGATTTTACCACTAAACCACTTGCGCT TGTTATTTAC chrVII:930899-931144 + 27 1.05e-08 TGGCAACGTT GGATTTTACCACTAAACCACTTGCGCT TACTGATTAT chrVI:162070-162348 - 68 1.05e-08 AACGTT GGATTTTACCACTAAACCACTTGCGCT TGTTTTCTTG chrIV:83279-83845 - 35 1.05e-08 TGGCAACGTT GGATTTTACCACTAAACCACTTGCGCT AAGTGAACTT chrXVI:775665-776034 + 12 1.15e-08 TTGCAATCTG CTGCGCTACCACTGCGCCATACGAGCT TTTGAATTAT chrXVI:435656-436189 + 67 1.15e-08 TTGCAATCTG CTGCGCTACCACTGCGCCATACGAGCT TTTGTTG chrXVI:810584-810837 - 15 1.37e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATGGAGTCG CAAATAATGA chrVII:1003983-1004412 - 68 1.77e-08 AGTGCA ACGCTCTACCACTAAGCTAAGGAGGCA AACCCTTGAA chrVII:661554-661924 - 59 1.77e-08 TACAAGTGCA ACGCTCTACCACTAAGCTAAGGAGGCA AATTTTTACC chrXIV:374638-375100 - 49 2.10e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAGTCCGCT TATTTTTCTG chrI:138987-139333 - 41 2.48e-08 CCCAAAGCGA GAATCATACCACTAGACCACACGCCCG TACTAATTGA chrVIII:237766-238086 + 38 3.41e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAATCCGCT TACTATTTGT chrXIII:808086-808506 + 46 6.67e-08 CAGAACCGAA AGTGATAACCACTACACTATAGGACCT TTTTCTTCTG chrII:326475-327184 + 61 6.67e-08 TAAAGGCGAC GTCTTGAACCACTGGACCATTGGACCC GGAACTCGAT chrXII:448523-448915 + 27 1.23e-07 CAAAACCGAA AGTGATAACCACTACACTATAGGACCG GAACTTCTTG chrV:130856-131413 + 44 2.28e-07 CAAAACCGAA AGTGATAACCACTACACTATAAAACCT CTTAATTATT chrXV:110875-111177 + 32 3.38e-07 GGAAGGGTGG GATGATAACCACTACACTAACCGCCCG GGTTAATTGT chrXII:818507-818711 - 49 3.97e-07 CGGAAGAATG CATGCTAACCATTGCACTAGAGGAGCA TAATAAATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTTWMCCACTVSGCCAHRNRASCW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:656859-657166 2.8e-12 18_[+2]_55 chrVII:774168-774569 2.8e-12 29_[-2]_44 chrX:197252-197514 4.1e-12 26_[+2]_47 chrXIV:602075-602568 5.9e-12 39_[-2]_34 chrXII:734637-734934 5.9e-12 65_[-2]_8 chrV:443145-443336 5.9e-12 59_[+2]_14 chrIX:183298-183686 5.9e-12 45_[+2]_28 chrIV:667617-668550 5.9e-12 21_[+2]_52 chrXIII:259001-259458 1e-11 34_[+2]_39 chrXII:167740-168219 1e-11 70_[+2]_3 chrVIII:132761-133370 1e-11 66_[+2]_7 chrV:86442-86788 1e-11 37_[-2]_36 chrIV:1305422-1305883 1.4e-11 26_[-2]_47 chrXIII:321035-321327 2e-11 62_[+2]_11 chrXII:605165-605605 8.9e-11 71_[+2]_2 chrXV:353927-354275 1.4e-10 36_[+2]_37 chrVIII:115979-116287 1.8e-10 70_[+2]_3 chrXVI:689327-689881 3e-10 9_[-2]_64 chrXIII:504699-505168 1.1e-09 10_[-2]_63 chrXII:628229-628613 1.1e-09 10_[-2]_63 chrVII:700160-701153 1.3e-09 67_[-2]_6 chrVII:823358-823695 3.3e-09 4_[-2]_69 chrX:378146-378556 4.1e-09 57_[-2]_16 chrVI:226528-226919 4.5e-09 61_[+2]_12 chrIII:127543-127854 4.9e-09 66_[-2]_7 chrXI:84009-84392 5.5e-09 56_[-2]_17 chrX:424311-424721 5.5e-09 23_[+2]_50 chrIV:1352386-1352643 5.5e-09 48_[+2]_25 chrXI:74463-74785 6e-09 48_[-2]_25 chrX:422712-423253 6e-09 3_[-2]_70 chrX:390928-391317 6e-09 17_[+2]_56 chrIV:1175600-1176062 7.3e-09 46_[-2]_27 chrXIII:747787-748114 9.6e-09 37_[+2]_36 chrXI:162442-162652 9.6e-09 35_[+2]_38 chrX:374207-374852 9.6e-09 72_[+2]_1 chrVII:736201-736516 9.6e-09 30_[-2]_43 chrXVI:860151-860669 1e-08 17_[-2]_56 chrVII:930899-931144 1e-08 26_[+2]_47 chrVI:162070-162348 1e-08 67_[-2]_6 chrIV:83279-83845 1e-08 34_[-2]_39 chrXVI:775665-776034 1.1e-08 11_[+2]_62 chrXVI:435656-436189 1.1e-08 66_[+2]_7 chrXVI:810584-810837 1.4e-08 14_[-2]_59 chrVII:1003983-1004412 1.8e-08 67_[-2]_6 chrVII:661554-661924 1.8e-08 58_[-2]_15 chrXIV:374638-375100 2.1e-08 48_[-2]_25 chrI:138987-139333 2.5e-08 40_[-2]_33 chrVIII:237766-238086 3.4e-08 37_[+2]_36 chrXIII:808086-808506 6.7e-08 45_[+2]_28 chrII:326475-327184 6.7e-08 60_[+2]_13 chrXII:448523-448915 1.2e-07 26_[+2]_47 chrV:130856-131413 2.3e-07 43_[+2]_30 chrXV:110875-111177 3.4e-07 31_[+2]_42 chrXII:818507-818711 4e-07 48_[-2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTTWMCCACTVSGCCAHRNRASCW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCYTTWMCCACTVSGCCAHRNRASCW width=27 seqs=54 chrXII:656859-657166 ( 19) CGCGCTACCGACTACGCCACACGCCCA 1 chrVII:774168-774569 ( 30) CGCGCTACCGACTACGCCACACGCCCA 1 chrX:197252-197514 ( 27) CGCGCTACCGACTACGCCACACGCCCT 1 chrXIV:602075-602568 ( 40) GCCTTAACCAACTGGGCCAAGAGACCA 1 chrXII:734637-734934 ( 66) GCCTTAACCAACTGGGCCAAGAGACCA 1 chrV:443145-443336 ( 60) GCCTTAACCAACTGGGCCAAGAGACCA 1 chrIX:183298-183686 ( 46) GCCTTAACCAACTGGGCCAAGAGACCA 1 chrIV:667617-668550 ( 22) GCCTTAACCAACTGGGCCAAGAGACCA 1 chrXIII:259001-259458 ( 35) CGCCTTAACCACTCGGCCAAGTTGCCA 1 chrXII:167740-168219 ( 71) CGCCTTAACCACTCGGCCAAGTTGCCA 1 chrVIII:132761-133370 ( 67) CGCCTTAACCACTCGGCCAAGTTGCCA 1 chrV:86442-86788 ( 38) CGCCTTAACCACTCGGCCAAGTTGCCA 1 chrIV:1305422-1305883 ( 27) CGCCTTAACCACTCGGCCAAGTTGCCT 1 chrXIII:321035-321327 ( 63) CGCGCTACCGACTACGCCACACGCCCG 1 chrXII:605165-605605 ( 72) AGCTCTAACCACTGAGCTACACGAGCA 1 chrXV:353927-354275 ( 37) CGCCTTACCAACTTGGCCATAGAAGCA 1 chrVIII:115979-116287 ( 71) CGCCTTACCAACTTGGCCATAGAAGCT 1 chrXVI:689327-689881 ( 10) CGCCTTAACCACTCGGCCATAGTGCCC 1 chrXIII:504699-505168 ( 11) GCCTTAGACCGCTCGGCCAAACAACCA 1 chrXII:628229-628613 ( 11) GCCTTAGACCGCTCGGCCAAACAACCA 1 chrVII:700160-701153 ( 68) GCCTTAGACCACTCGGCCAGAGTACCA 1 chrVII:823358-823695 ( 5) GCCATAACCGACTAGACCACGAAACCA 1 chrX:378146-378556 ( 58) GCCATAACCGACTAGACCACGAAACCT 1 chrVI:226528-226919 ( 62) CGCGCTACCGATTGCGCCAACAAGGCA 1 chrIII:127543-127854 ( 67) GCCTTAACCAACTTGGCCATGGAGTCA 1 chrXI:84009-84392 ( 57) GCCTTAGACCACTCGGCCAACCCTCCA 1 chrX:424311-424721 ( 24) GCCTTAGACCACTCGGCCAACCCTCCA 1 chrIV:1352386-1352643 ( 49) CGCGCTACCGATTGCGCCAACAAGGCT 1 chrXI:74463-74785 ( 49) GCCTTAACCAACTTGGCCATGGAGTCT 1 chrX:422712-423253 ( 4) CGCTCTTCCTACTGAGCTACTGAAGCA 1 chrX:390928-391317 ( 18) CGCTCTTCCTACTGAGCTACTGAAGCA 1 chrIV:1175600-1176062 ( 47) CGCTCTTCCTACTGAGCTACTGAAGCT 1 chrXIII:747787-748114 ( 38) ACGCGTTGCCATTACGCCACGCGAGCT 1 chrXI:162442-162652 ( 36) ACGCGTTGCCATTACGCCACGCGAGCT 1 chrX:374207-374852 ( 73) ACGCGTTGCCATTACGCCACGCGAGCT 1 chrVII:736201-736516 ( 31) ACGCGTTGCCATTACGCCACGCGAGCT 1 chrXVI:860151-860669 ( 18) GGATTTTACCACTAAACCACTTGCGCT 1 chrVII:930899-931144 ( 27) GGATTTTACCACTAAACCACTTGCGCT 1 chrVI:162070-162348 ( 68) GGATTTTACCACTAAACCACTTGCGCT 1 chrIV:83279-83845 ( 35) GGATTTTACCACTAAACCACTTGCGCT 1 chrXVI:775665-776034 ( 12) CTGCGCTACCACTGCGCCATACGAGCT 1 chrXVI:435656-436189 ( 67) CTGCGCTACCACTGCGCCATACGAGCT 1 chrXVI:810584-810837 ( 15) GCCTTAACCAACTTGGCCATGGAGTCG 1 chrVII:1003983-1004412 ( 68) ACGCTCTACCACTAAGCTAAGGAGGCA 1 chrVII:661554-661924 ( 59) ACGCTCTACCACTAAGCTAAGGAGGCA 1 chrXIV:374638-375100 ( 49) CGCTCTCCCAACTGAGCTAAGTCCGCT 1 chrI:138987-139333 ( 41) GAATCATACCACTAGACCACACGCCCG 1 chrVIII:237766-238086 ( 38) CGCTCTCCCAACTGAGCTAAATCCGCT 1 chrXIII:808086-808506 ( 46) AGTGATAACCACTACACTATAGGACCT 1 chrII:326475-327184 ( 61) GTCTTGAACCACTGGACCATTGGACCC 1 chrXII:448523-448915 ( 27) AGTGATAACCACTACACTATAGGACCG 1 chrV:130856-131413 ( 44) AGTGATAACCACTACACTATAAAACCT 1 chrXV:110875-111177 ( 32) GATGATAACCACTACACTAACCGCCCG 1 chrXII:818507-818711 ( 49) CATGCTAACCATTGCACTAGAGGAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTTWMCCACTVSGCCAHRNRASCW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 33818 bayes= 10.4838 E= 5.2e-163 -76 113 113 -1240 -250 106 143 -250 -176 184 -33 -176 -308 67 13 56 -208 48 -74 82 -8 -133 -333 96 87 -233 -101 -8 67 120 -133 -1240 -1240 243 -1240 -1240 -50 163 -33 -250 162 -1240 -233 -1240 -1240 223 -1240 -128 -1240 -1240 -1240 167 31 13 76 -176 -50 76 132 -1240 -38 -1240 203 -1240 -1240 243 -1240 -1240 -1240 203 -1240 -38 167 -1240 -1240 -1240 31 92 -233 -50 16 -101 113 -108 -76 76 67 -62 0 -133 137 -128 67 26 37 -308 -1240 148 120 -250 -1240 243 -1240 -1240 62 -233 -101 31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTTWMCCACTVSGCCAHRNRASCW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 54 E= 5.2e-163 0.185185 0.407407 0.407407 0.000000 0.055556 0.388889 0.500000 0.055556 0.092593 0.666667 0.148148 0.092593 0.037037 0.296296 0.203704 0.462963 0.074074 0.259259 0.111111 0.555556 0.296296 0.074074 0.018519 0.611111 0.574074 0.037037 0.092593 0.296296 0.500000 0.425926 0.074074 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.574074 0.148148 0.055556 0.962963 0.000000 0.037037 0.000000 0.000000 0.870370 0.000000 0.129630 0.000000 0.000000 0.000000 1.000000 0.388889 0.203704 0.314815 0.092593 0.222222 0.314815 0.462963 0.000000 0.240741 0.000000 0.759259 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.759259 0.000000 0.240741 1.000000 0.000000 0.000000 0.000000 0.388889 0.351852 0.037037 0.222222 0.351852 0.092593 0.407407 0.148148 0.185185 0.314815 0.296296 0.203704 0.314815 0.074074 0.481481 0.129630 0.500000 0.222222 0.240741 0.037037 0.000000 0.518519 0.425926 0.055556 0.000000 1.000000 0.000000 0.000000 0.481481 0.037037 0.092593 0.388889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTTWMCCACTVSGCCAHRNRASCW MEME-2 regular expression -------------------------------------------------------------------------------- [CG][GC]C[TCG][TC][TA][AT][AC]C[CA]ACT[AGC][GCA][GA]C[CT]A[ACT][GA][CGT][GA][AGC][CG]C[AT] -------------------------------------------------------------------------------- Time 380.20 secs. ******************************************************************************** ******************************************************************************** MOTIF GGRWTYGAACCSRKGAYCTYY MEME-3 width = 21 sites = 27 llr = 449 E-value = 1.8e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRWTYGAACCSRKGAYCTYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1144:::a9:1:41281:::1 pos.-specific C :::::7:::a83111:48355 probability G 9951::a::::63471:1::: matrix T ::15a3::1:1114:15:744 bits 2.4 2.2 * * 1.9 * * 1.7 ** * ** * Relative 1.5 ** * ** * * Entropy 1.2 ** ******* * (24.0 bits) 1.0 ** ******** ** *** 0.7 *** ******** ******* 0.5 *** ******** ******* 0.2 ********************* 0.0 --------------------- Multilevel GGGTTCGAACCGAGGATCTCC consensus AA T CGT C CTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRWTYGAACCSRKGAYCTYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrV:311740-312286 + 71 1.84e-11 GGACGCAACC GGAATCGAACCGATGACCTCT TCCTTGCAA chrIX:183298-183686 + 9 2.14e-11 TCTCTAGC GGGATCGAACCGCTGATCCCC GCGTTATTAG chrXV:353927-354275 + 1 5.70e-11 . GGATTTGAACCGATGATCTCC ACATTACTAG chrX:58702-59506 + 57 5.70e-11 GCTTCCAATC GGATTTGAACCGATGATCTCC ACATTACTAG chrVIII:115979-116287 + 35 5.70e-11 GCTTCCAATC GGATTTGAACCGATGATCTCC ACATTACTAG chrVII:774168-774569 - 72 9.04e-11 ACGAGTCC GGAATCGAACCGGAGACCTCT CCCATGCTAA chrXIII:195954-196294 + 5 9.47e-10 GCTG GGAATTGAACCCAGGGCCTCT CGCATGCTTT chrVIII:388659-389208 + 21 9.47e-10 GGGCGAGCTG GGAATTGAACCCAGGGCCTCT CGCATGCTTT chrXIII:747787-748114 + 3 1.07e-09 TG GGGGTCGAACCCATAATCTTC TGATTAGAAG chrXI:162442-162652 + 1 1.07e-09 . GGGGTCGAACCCATAATCTTC TGATTAGAAG chrVII:736201-736516 - 72 1.07e-09 TCACGATG GGGGTCGAACCCATAATCTTC TGATTAGAAG chrV:130856-131413 + 9 2.33e-09 TCTTACCC GGATTCGAACCGGGGTTGTTC GGATCAAAAC chrVIII:475534-475900 + 50 7.16e-09 GTTCCAACCG AGGATCGAACTCGGGACCTTT GCCGTGTGAA chrVII:823358-823695 - 48 1.05e-08 GATTTCGCCC AGGATCGAACTGGGGACGTTC TGCGTGTTAA chrII:36239-36766 - 5 1.15e-08 GCGAATTCTG TGGATCGAACACAGGACCTCC AGAT chrXIII:808086-808506 + 11 2.16e-08 GGTCCCACCC GGATTCGAACTGGGGTTGTTC GGATCAGAAC chrIV:83279-83845 - 75 2.35e-08 AGCCC GGAATCGAACCGGGGGCCCAA CGATGGCAAC chrIV:1352386-1352643 + 13 3.03e-08 GCCCTGTAGG GGGCTCGAACCCCTAACCTTA TGATTAAGAG chrX:422712-423253 - 46 5.81e-08 GCTCCAGGGG AGGTTCGAACTCTCGACCTTC AGATTATGAG chrII:347439-347975 + 7 6.29e-08 CCGCGC GAGTTCGAACCTCGCATCCTT CAGTAATATT chrII:9520-9831 + 19 6.29e-08 TTGTCCGCGC GAGTTCGAACCTCGCATCCTT CAGTATTTTT chrXI:302708-303226 - 75 6.79e-08 GGACA GGAATTGAACCTGCAACCCTT CGATTGCAAT chrIII:149744-150224 - 26 1.07e-07 AGCGCCGCTC GGTTTCGATCCGAGGACATCA GGGTTATGAG chrXII:448523-448915 - 3 3.01e-07 TATCACTTTC GGTTTTGATCCGGACAACCCC GG chrIII:168117-168525 - 52 3.01e-07 TATCACTTTC GGTTTTGATCCGGACAACCCC GGTTCGAATC chrVII:882788-883347 - 79 3.89e-07 A GAGTTCCAACCGTCGATGTCT CCGTTGTTGA chrIV:489635-491222 + 72 5.30e-07 ATCTTGGGAG GAGTTTGAAAAGATGATCTCT TACTCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRWTYGAACCSRKGAYCTYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:311740-312286 1.8e-11 70_[+3]_9 chrIX:183298-183686 2.1e-11 8_[+3]_71 chrXV:353927-354275 5.7e-11 [+3]_79 chrX:58702-59506 5.7e-11 56_[+3]_23 chrVIII:115979-116287 5.7e-11 34_[+3]_45 chrVII:774168-774569 9e-11 71_[-3]_8 chrXIII:195954-196294 9.5e-10 4_[+3]_75 chrVIII:388659-389208 9.5e-10 20_[+3]_59 chrXIII:747787-748114 1.1e-09 2_[+3]_77 chrXI:162442-162652 1.1e-09 [+3]_79 chrVII:736201-736516 1.1e-09 71_[-3]_8 chrV:130856-131413 2.3e-09 8_[+3]_71 chrVIII:475534-475900 7.2e-09 49_[+3]_30 chrVII:823358-823695 1.1e-08 47_[-3]_32 chrII:36239-36766 1.2e-08 4_[-3]_75 chrXIII:808086-808506 2.2e-08 10_[+3]_69 chrIV:83279-83845 2.4e-08 74_[-3]_5 chrIV:1352386-1352643 3e-08 12_[+3]_67 chrX:422712-423253 5.8e-08 45_[-3]_34 chrII:347439-347975 6.3e-08 6_[+3]_73 chrII:9520-9831 6.3e-08 18_[+3]_61 chrXI:302708-303226 6.8e-08 74_[-3]_5 chrIII:149744-150224 1.1e-07 25_[-3]_54 chrXII:448523-448915 3e-07 2_[-3]_77 chrIII:168117-168525 3e-07 51_[-3]_28 chrVII:882788-883347 3.9e-07 78_[-3]_1 chrIV:489635-491222 5.3e-07 71_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRWTYGAACCSRKGAYCTYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRWTYGAACCSRKGAYCTYY width=21 seqs=27 chrV:311740-312286 ( 71) GGAATCGAACCGATGACCTCT 1 chrIX:183298-183686 ( 9) GGGATCGAACCGCTGATCCCC 1 chrXV:353927-354275 ( 1) GGATTTGAACCGATGATCTCC 1 chrX:58702-59506 ( 57) GGATTTGAACCGATGATCTCC 1 chrVIII:115979-116287 ( 35) GGATTTGAACCGATGATCTCC 1 chrVII:774168-774569 ( 72) GGAATCGAACCGGAGACCTCT 1 chrXIII:195954-196294 ( 5) GGAATTGAACCCAGGGCCTCT 1 chrVIII:388659-389208 ( 21) GGAATTGAACCCAGGGCCTCT 1 chrXIII:747787-748114 ( 3) GGGGTCGAACCCATAATCTTC 1 chrXI:162442-162652 ( 1) GGGGTCGAACCCATAATCTTC 1 chrVII:736201-736516 ( 72) GGGGTCGAACCCATAATCTTC 1 chrV:130856-131413 ( 9) GGATTCGAACCGGGGTTGTTC 1 chrVIII:475534-475900 ( 50) AGGATCGAACTCGGGACCTTT 1 chrVII:823358-823695 ( 48) AGGATCGAACTGGGGACGTTC 1 chrII:36239-36766 ( 5) TGGATCGAACACAGGACCTCC 1 chrXIII:808086-808506 ( 11) GGATTCGAACTGGGGTTGTTC 1 chrIV:83279-83845 ( 75) GGAATCGAACCGGGGGCCCAA 1 chrIV:1352386-1352643 ( 13) GGGCTCGAACCCCTAACCTTA 1 chrX:422712-423253 ( 46) AGGTTCGAACTCTCGACCTTC 1 chrII:347439-347975 ( 7) GAGTTCGAACCTCGCATCCTT 1 chrII:9520-9831 ( 19) GAGTTCGAACCTCGCATCCTT 1 chrXI:302708-303226 ( 75) GGAATTGAACCTGCAACCCTT 1 chrIII:149744-150224 ( 26) GGTTTCGATCCGAGGACATCA 1 chrXII:448523-448915 ( 3) GGTTTTGATCCGGACAACCCC 1 chrIII:168117-168525 ( 52) GGTTTTGATCCGGACAACCCC 1 chrVII:882788-883347 ( 79) GAGTTCCAACCGTCGATGTCT 1 chrIV:489635-491222 ( 72) GAGTTTGAAAAGATGATCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRWTYGAACCSRKGAYCTYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 36560 bayes= 10.9714 E= 1.8e-046 -150 -1140 219 -308 -108 -1140 219 -1140 38 -1140 137 -150 24 -233 -74 62 -1140 -1140 -1140 167 -1140 184 -1140 9 -1140 -233 237 -1140 167 -1140 -1140 -1140 150 -1140 -1140 -150 -308 237 -1140 -1140 -208 206 -1140 -108 -1140 84 158 -150 50 -33 84 -208 -150 -74 113 24 -76 -33 184 -1140 138 -1140 -74 -208 -208 126 -1140 62 -308 213 -33 -1140 -1140 48 -1140 124 -308 148 -1140 50 -150 148 -1140 24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRWTYGAACCSRKGAYCTYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 27 E= 1.8e-046 0.111111 0.000000 0.851852 0.037037 0.148148 0.000000 0.851852 0.000000 0.407407 0.000000 0.481481 0.111111 0.370370 0.037037 0.111111 0.481481 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.037037 0.962963 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.037037 0.962963 0.000000 0.000000 0.074074 0.777778 0.000000 0.148148 0.000000 0.333333 0.555556 0.111111 0.444444 0.148148 0.333333 0.074074 0.111111 0.111111 0.407407 0.370370 0.185185 0.148148 0.666667 0.000000 0.814815 0.000000 0.111111 0.074074 0.074074 0.444444 0.000000 0.481481 0.037037 0.814815 0.148148 0.000000 0.000000 0.259259 0.000000 0.740741 0.037037 0.518519 0.000000 0.444444 0.111111 0.518519 0.000000 0.370370 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRWTYGAACCSRKGAYCTYY MEME-3 regular expression -------------------------------------------------------------------------------- GG[GA][TA]T[CT]GAACC[GC][AG][GT]GA[TC]C[TC][CT][CT] -------------------------------------------------------------------------------- Time 553.87 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71737-73241 7.51e-01 100 chrI:81920-82263 1.84e-01 100 chrI:138987-139333 1.01e-07 40_[-2(2.48e-08)]_33 chrI:166175-166744 6.78e-01 100 chrII:9520-9831 1.47e-08 18_[+3(6.29e-08)]_61 chrII:36239-36766 9.31e-09 4_[-3(1.15e-08)]_75 chrII:45015-45308 1.10e-01 100 chrII:60686-61634 7.92e-01 100 chrII:87968-88575 5.32e-01 100 chrII:88976-90469 9.76e-01 100 chrII:167933-168168 4.34e-01 100 chrII:181297-181597 3.95e-01 100 chrII:197091-197815 4.37e-01 100 chrII:226981-227343 1.17e-08 22_[-1(4.91e-12)]_48 chrII:236531-237354 4.49e-01 100 chrII:266222-266936 6.29e-01 100 chrII:326475-327184 4.52e-15 23_[+3(3.94e-09)]_16_[+2(6.67e-08)]_\ 13 chrII:332343-332940 8.73e-01 100 chrII:347439-347975 1.14e-05 6_[+3(6.29e-08)]_73 chrII:350607-350945 2.89e-01 100 chrII:393123-394697 8.53e-01 100 chrII:405652-406226 2.58e-13 28_[-3(1.07e-09)]_20_[-2(8.10e-05)]_\ 4 chrII:415528-415947 4.69e-01 100 chrII:416098-416268 6.64e-01 100 chrII:477101-477429 5.35e-01 100 chrII:592944-593241 5.51e-01 100 chrII:604162-607130 9.83e-01 100 chrII:644883-645424 1.79e-01 100 chrIII:90796-91086 4.31e-06 59_[-1(3.22e-09)]_11 chrIII:123296-123794 8.70e-01 100 chrIII:127543-127854 3.05e-05 66_[-2(4.95e-09)]_7 chrIII:137743-139004 4.66e-01 100 chrIII:142681-142976 3.67e-01 100 chrIII:149744-150224 6.80e-05 25_[-3(1.07e-07)]_54 chrIII:150917-151557 7.09e-01 100 chrIII:163501-163829 1.38e-01 100 chrIII:168117-168525 3.47e-11 40_[+3(9.47e-10)]_39 chrIII:177106-178747 8.27e-01 100 chrIII:227777-228210 2.30e-01 100 chrIII:295362-295880 6.25e-01 100 chrIV:83279-83845 1.54e-09 34_[-2(1.05e-08)]_13_[-3(2.35e-08)]_\ 5 chrIV:117189-118206 4.75e-01 100 chrIV:129188-130947 9.54e-01 100 chrIV:221440-222578 3.01e-01 100 chrIV:229126-230512 1.25e-01 100 chrIV:308057-309548 1.21e-02 15_[+2(4.39e-05)]_58 chrIV:321421-321931 5.26e-01 100 chrIV:341163-341644 2.93e-01 100 chrIV:358096-358351 8.83e-01 100 chrIV:359113-359750 7.65e-01 100 chrIV:410235-410446 9.90e-01 100 chrIV:411287-411577 5.58e-01 100 chrIV:433596-433922 3.21e-01 100 chrIV:434122-435128 4.06e-01 100 chrIV:437561-438213 7.01e-01 100 chrIV:488247-488974 3.71e-01 100 chrIV:489635-491222 2.41e-03 71_[+3(5.30e-07)]_8 chrIV:519654-521102 4.46e-01 100 chrIV:541185-541906 7.24e-01 100 chrIV:567802-569384 1.89e-01 100 chrIV:579108-580437 8.49e-01 100 chrIV:580598-580776 7.95e-01 100 chrIV:619750-620227 5.29e-11 22_[+1(4.75e-10)]_48 chrIV:667617-668550 9.30e-09 21_[+2(5.93e-12)]_52 chrIV:757478-758136 2.09e-02 100 chrIV:802585-802834 1.93e-06 63_[+1(6.54e-10)]_7 chrIV:884295-884565 6.54e-03 70_[+1(2.86e-06)] chrIV:945654-946605 7.93e-02 100 chrIV:992673-993288 1.92e-01 100 chrIV:1016973-1017478 2.25e-10 23_[+1(4.91e-12)]_47 chrIV:1075351-1075754 1.84e-02 16_[+2(1.78e-05)]_57 chrIV:1094817-1095650 5.15e-01 100 chrIV:1150324-1151172 9.36e-01 100 chrIV:1175600-1176062 1.55e-05 46_[-2(7.26e-09)]_27 chrIV:1176246-1176393 9.84e-01 100 chrIV:1201476-1201962 4.29e-01 100 chrIV:1236492-1237987 2.23e-01 100 chrIV:1300959-1301297 7.36e-01 100 chrIV:1305422-1305883 1.05e-07 26_[-2(1.41e-11)]_47 chrIV:1352386-1352643 3.74e-10 12_[+3(3.03e-08)]_15_[+2(5.45e-09)]_\ 25 chrIV:1355748-1355986 7.38e-01 100 chrIV:1359448-1360832 4.19e-01 100 chrIV:1401294-1401918 3.83e-01 100 chrIV:1402839-1403390 8.55e-01 100 chrIV:1440405-1443433 7.47e-01 100 chrIV:1450706-1451124 7.33e-01 100 chrIV:1461033-1461201 9.39e-01 100 chrIV:1461418-1461835 9.10e-01 100 chrIV:1489335-1489898 3.39e-01 100 chrIX:67783-68491 7.77e-01 100 chrIX:99686-99999 5.59e-01 100 chrIX:174737-175178 2.12e-01 100 chrIX:183298-183686 1.10e-15 8_[+3(2.14e-11)]_16_[+2(5.93e-12)]_\ 28 chrIX:197358-197737 9.22e-01 100 chrIX:210665-210940 1.05e-01 22_[+1(6.85e-05)]_48 chrIX:248485-248938 4.66e-01 100 chrIX:254275-254514 8.61e-01 100 chrIX:257397-258168 5.25e-01 100 chrIX:299838-300653 3.90e-13 24_[+1(4.91e-12)]_46 chrIX:315833-316559 1.88e-01 100 chrIX:324195-324515 4.54e-02 43_[+2(8.10e-05)]_30 chrIX:325575-326074 9.93e-14 14_[-3(5.70e-11)]_65 chrIX:336022-336629 3.65e-09 65_[+1(2.03e-12)]_5 chrIX:370266-370579 5.23e-01 100 chrIX:390270-390873 1.29e-01 100 chrV:51827-53304 9.99e-01 100 chrV:53543-54631 2.12e-02 44_[+1(9.64e-05)]_26 chrV:61075-62127 2.45e-01 100 chrV:78055-79391 6.60e-03 100 chrV:85166-86243 7.85e-02 100 chrV:86442-86788 6.31e-08 37_[-2(1.00e-11)]_36 chrV:99747-100282 8.22e-01 100 chrV:116749-116953 8.20e-01 100 chrV:117134-118272 2.09e-01 100 chrV:130856-131413 2.24e-09 8_[+3(2.33e-09)]_14_[+2(2.28e-07)]_\ 30 chrV:135222-136169 3.31e-01 100 chrV:138479-140002 3.78e-01 100 chrV:140208-140855 9.11e-01 100 chrV:176913-177439 6.72e-10 22_[-1(2.20e-11)]_48 chrV:249685-250530 8.81e-02 100 chrV:287494-288771 8.11e-01 100 chrV:305823-307484 1.61e-01 100 chrV:311740-312286 2.00e-09 70_[+3(1.84e-11)]_9 chrV:354802-355466 9.12e-02 100 chrV:396185-396529 9.03e-01 100 chrV:423074-424284 6.78e-01 100 chrV:431039-432084 8.75e-01 100 chrV:434432-435116 6.41e-02 100 chrV:435298-435925 1.95e-01 100 chrV:438519-438979 6.05e-11 52_[-1(9.90e-10)]_18 chrV:441543-442602 6.36e-01 100 chrV:443145-443336 3.56e-24 3_[+1(4.25e-12)]_26_[+2(5.93e-12)]_\ 14 chrV:469171-470837 6.25e-01 100 chrV:485558-487677 6.94e-01 100 chrV:550951-551563 3.63e-08 69_[+1(3.68e-12)]_1 chrVI:4584-4752 4.20e-01 100 chrVI:64112-65567 5.72e-01 100 chrVI:95491-95886 5.82e-02 3_[-2(8.79e-05)]_70 chrVI:101384-101693 6.73e-01 100 chrVI:136957-137828 7.95e-01 100 chrVI:157906-158206 8.82e-01 100 chrVI:162070-162348 4.08e-05 67_[-2(1.05e-08)]_6 chrVI:167287-167618 1.81e-01 100 chrVI:180375-181274 1.75e-01 100 chrVI:191266-191748 7.08e-07 47_[+1(1.10e-09)]_23 chrVI:210312-210923 4.70e-07 43_[+1(1.81e-09)]_27 chrVI:221755-222019 6.77e-01 100 chrVI:223348-224129 5.00e-01 100 chrVI:226528-226919 5.82e-17 6_[+1(1.24e-10)]_25_[+2(4.48e-09)]_\ 12 chrVII:110049-110784 5.80e-02 100 chrVII:115174-115731 8.38e-01 100 chrVII:121945-122496 2.60e-01 100 chrVII:148043-149464 9.00e-02 100 chrVII:168764-169248 1.86e-01 100 chrVII:185074-185788 3.06e-03 4_[+2(1.29e-05)]_69 chrVII:205022-205739 1.80e-01 100 chrVII:227269-228359 7.70e-01 100 chrVII:254148-254704 5.19e-01 100 chrVII:277004-278706 4.95e-01 100 chrVII:286885-287814 2.79e-10 42_[+1(2.42e-09)]_28 chrVII:310378-312629 5.69e-01 100 chrVII:319246-320130 9.83e-02 14_[+3(4.11e-05)]_65 chrVII:328392-328992 6.73e-01 100 chrVII:364887-366648 9.97e-01 100 chrVII:405467-406103 8.74e-01 100 chrVII:411858-412573 5.93e-01 100 chrVII:422911-423589 9.30e-01 100 chrVII:438614-439874 9.23e-01 100 chrVII:440675-441120 1.86e-01 100 chrVII:479130-482680 1.65e-01 100 chrVII:531252-531807 6.71e-01 100 chrVII:533837-535177 3.97e-01 100 chrVII:541729-542132 2.58e-08 19_[-1(5.88e-10)]_51 chrVII:544417-544905 6.25e-02 11_[+2(8.10e-05)]_62 chrVII:545120-546035 7.39e-01 100 chrVII:555189-557482 3.60e-01 100 chrVII:648734-649316 2.61e-01 100 chrVII:661554-661924 3.15e-05 58_[-2(1.77e-08)]_15 chrVII:700160-701153 1.18e-05 67_[-2(1.27e-09)]_6 chrVII:706955-707189 9.74e-01 100 chrVII:726181-726720 5.87e-01 100 chrVII:730966-731455 2.38e-07 28_[-1(3.54e-09)]_42 chrVII:736201-736516 9.98e-11 30_[-2(9.59e-09)]_14_[-3(1.07e-09)]_\ 8 chrVII:738533-739613 9.80e-01 100 chrVII:774168-774569 4.90e-15 29_[-2(2.83e-12)]_15_[-3(9.04e-11)]_\ 8 chrVII:779377-779698 3.36e-02 100 chrVII:787385-788725 6.22e-01 100 chrVII:794092-794493 9.66e-01 100 chrVII:806630-807737 9.26e-01 100 chrVII:823358-823695 5.61e-15 4_[-2(3.32e-09)]_16_[-3(1.05e-08)]_\ 32 chrVII:828340-828969 6.21e-02 100 chrVII:845264-846167 9.27e-13 32_[-1(1.93e-11)]_38 chrVII:857103-857658 5.80e-05 39_[+1(3.65e-08)]_31 chrVII:876143-876526 6.38e-01 100 chrVII:878533-879336 3.04e-01 100 chrVII:882788-883347 3.71e-04 78_[-3(3.89e-07)]_1 chrVII:883500-883894 2.23e-01 100 chrVII:930899-931144 8.64e-05 26_[+2(1.05e-08)]_47 chrVII:1003983-1004412 1.73e-05 67_[-2(1.77e-08)]_6 chrVIII:62626-63574 1.32e-01 100 chrVIII:74900-75930 9.73e-01 100 chrVIII:103301-104866 5.20e-01 100 chrVIII:115979-116287 2.49e-19 34_[+3(5.70e-11)]_15_[+2(1.78e-10)]_\ 3 chrVIII:125913-126282 8.79e-01 100 chrVIII:126495-127933 1.34e-01 100 chrVIII:132761-133370 6.50e-15 2_[+1(1.75e-10)]_34_[+2(1.00e-11)]_\ 7 chrVIII:133583-135004 2.34e-01 100 chrVIII:145432-146750 7.94e-01 100 chrVIII:149019-149198 2.48e-01 100 chrVIII:175055-175323 3.47e-01 100 chrVIII:237766-238086 7.56e-05 37_[+2(3.41e-08)]_36 chrVIII:296736-297229 1.60e-01 100 chrVIII:358302-359097 7.87e-01 100 chrVIII:381479-383656 9.62e-01 100 chrVIII:388659-389208 2.12e-09 20_[+3(9.47e-10)]_25_[+1(1.02e-06)]_\ 4 chrVIII:451976-453250 6.75e-01 100 chrVIII:466975-467282 7.54e-01 100 chrVIII:475534-475900 5.47e-06 49_[+3(7.16e-09)]_30 chrVIII:505865-506182 2.00e-01 100 chrVIII:556954-557142 5.90e-01 100 chrX:58702-59506 6.36e-12 56_[+3(5.70e-11)]_23 chrX:73079-75675 7.39e-01 100 chrX:75858-76476 5.83e-01 100 chrX:90039-90383 7.85e-01 100 chrX:115755-116284 1.75e-01 100 chrX:139024-140101 3.16e-01 100 chrX:156008-157237 4.02e-01 100 chrX:157510-157918 5.09e-01 100 chrX:197252-197514 1.30e-07 26_[+2(4.12e-12)]_47 chrX:204537-205012 3.80e-10 9_[-2(8.55e-05)]_24_[-1(2.03e-12)]_\ 10 chrX:233348-233546 1.86e-01 100 chrX:233729-234818 2.70e-01 100 chrX:349045-349432 1.78e-01 100 chrX:354173-354566 8.79e-01 100 chrX:355220-355737 4.54e-02 26_[-2(8.10e-05)]_47 chrX:374207-374852 4.79e-17 37_[+3(1.07e-09)]_14_[+2(9.59e-09)]_\ 1 chrX:378146-378556 5.01e-05 57_[-2(4.06e-09)]_16 chrX:390928-391317 4.42e-05 17_[+2(6.01e-09)]_56 chrX:396570-397264 6.74e-01 100 chrX:414565-415299 3.73e-01 100 chrX:415679-416321 5.65e-04 60_[+2(3.19e-06)]_13 chrX:422712-423253 4.42e-13 3_[-2(6.01e-09)]_15_[-3(5.81e-08)]_\ 34 chrX:424311-424721 7.30e-05 23_[+2(5.45e-09)]_50 chrX:436075-436267 6.73e-01 100 chrX:517488-518302 1.31e-05 17_[-1(1.29e-06)]_53 chrX:523921-524433 2.21e-01 100 chrX:530134-532266 9.71e-01 100 chrX:538529-538718 7.33e-11 31_[-1(1.97e-10)]_39 chrX:540813-542495 9.93e-01 100 chrX:542770-543742 4.01e-01 100 chrX:607869-608083 1.66e-01 100 chrX:614117-615796 6.58e-01 100 chrX:617704-618251 8.56e-08 70_[-1(9.79e-11)] chrX:651215-651563 7.72e-02 100 chrX:703319-703639 4.45e-01 100 chrXI:777-1074 9.46e-01 100 chrXI:46721-46986 8.24e-01 100 chrXI:74463-74785 4.97e-06 48_[-2(6.01e-09)]_25 chrXI:84009-84392 6.94e-05 56_[-2(5.45e-09)]_17 chrXI:108773-109043 7.18e-01 100 chrXI:140818-141481 7.99e-01 100 chrXI:158225-159300 5.92e-01 100 chrXI:162442-162652 9.18e-11 [+3(1.07e-09)]_14_[+2(9.59e-09)]_38 chrXI:163306-164469 5.03e-01 100 chrXI:282855-284455 4.45e-01 100 chrXI:302708-303226 2.11e-05 74_[-3(6.79e-08)]_5 chrXI:307952-308537 2.18e-01 100 chrXI:313273-313598 7.25e-08 7_[+1(1.64e-09)]_63 chrXI:326432-327572 2.82e-02 14_[+2(1.78e-05)]_59 chrXI:334161-334970 5.85e-01 100 chrXI:379315-379911 5.92e-01 100 chrXI:430778-431609 1.13e-01 100 chrXI:457601-459742 2.63e-05 27_[-1(1.48e-08)]_43 chrXI:490482-491337 4.79e-01 100 chrXI:512931-513513 9.77e-01 100 chrXI:517806-518057 4.28e-01 100 chrXI:578607-579437 1.81e-11 66_[-1(3.83e-10)]_4 chrXI:617984-619266 8.80e-01 100 chrXII:47853-49202 3.35e-01 100 chrXII:64279-65416 1.15e-01 100 chrXII:92477-92660 4.99e-08 28_[-2(1.15e-08)]_45 chrXII:151066-151376 8.50e-01 100 chrXII:167740-168219 2.16e-16 6_[+1(4.91e-12)]_34_[+2(1.00e-11)]_\ 3 chrXII:198327-199735 5.52e-01 100 chrXII:201737-202719 2.31e-01 100 chrXII:214682-215059 1.98e-14 73_[+3(1.84e-11)]_6 chrXII:231821-234216 2.45e-01 100 chrXII:241596-241964 1.46e-02 37_[-3(1.50e-05)]_42 chrXII:282815-283613 5.45e-01 100 chrXII:366051-366545 2.02e-02 100 chrXII:374208-374669 3.26e-12 17_[-1(1.69e-11)]_53 chrXII:426929-427508 6.39e-08 13_[-1(7.49e-12)]_57 chrXII:448523-448915 4.35e-08 2_[-3(3.01e-07)]_3_[+2(1.23e-07)]_\ 47 chrXII:459650-460268 8.14e-01 100 chrXII:460441-460671 6.54e-01 100 chrXII:498262-500208 6.88e-01 100 chrXII:506283-506452 1.18e-01 100 chrXII:506686-507578 6.96e-02 100 chrXII:592378-592717 8.56e-08 13_[+1(9.79e-11)]_57 chrXII:605165-605605 6.62e-07 71_[+2(8.91e-11)]_2 chrXII:628229-628613 1.32e-05 10_[-2(1.13e-09)]_63 chrXII:636708-639950 4.13e-02 24_[-3(2.51e-05)]_55 chrXII:656859-657166 7.22e-08 18_[+2(2.83e-12)]_55 chrXII:673507-675126 7.06e-01 100 chrXII:712274-712647 8.11e-01 100 chrXII:713147-713568 7.89e-01 100 chrXII:732016-732297 8.56e-08 62_[-1(9.79e-11)]_8 chrXII:734637-734934 5.88e-08 65_[-2(5.93e-12)]_8 chrXII:780929-781891 3.03e-01 100 chrXII:783998-784510 2.55e-01 100 chrXII:793740-795373 9.07e-01 100 chrXII:796309-796824 7.47e-01 100 chrXII:797023-797461 9.44e-09 35_[-1(3.83e-10)]_35 chrXII:818507-818711 2.08e-03 48_[-2(3.97e-07)]_25 chrXII:819894-820321 2.79e-02 100 chrXII:855992-857294 6.77e-01 100 chrXII:875259-876078 2.26e-01 100 chrXII:897681-899611 8.52e-01 100 chrXII:922122-922880 5.62e-01 100 chrXII:932110-932512 4.97e-01 100 chrXII:962415-962603 1.37e-02 57_[-1(1.43e-05)]_13 chrXII:962824-963375 9.00e-01 100 chrXII:975805-976087 9.69e-01 100 chrXII:1017047-1019360 1.38e-01 100 chrXII:1028204-1028544 9.53e-01 100 chrXII:1029308-1029905 5.54e-01 100 chrXII:1051952-1052212 6.47e-16 30_[+1(4.25e-12)]_40 chrXIII:91559-92095 2.59e-01 100 chrXIII:131229-132071 6.12e-01 100 chrXIII:145708-146234 9.57e-01 100 chrXIII:146436-147203 5.45e-01 100 chrXIII:162658-164332 9.15e-01 100 chrXIII:168693-169010 7.96e-08 60_[-1(1.81e-09)]_10 chrXIII:195954-196294 2.81e-14 4_[+3(9.47e-10)]_45_[+2(1.15e-08)]_\ 3 chrXIII:223003-223933 1.86e-01 100 chrXIII:225165-226693 9.30e-01 100 chrXIII:259001-259458 7.69e-08 34_[+2(1.00e-11)]_39 chrXIII:290583-291103 1.46e-10 57_[-1(1.48e-11)]_13 chrXIII:296736-298940 7.96e-01 100 chrXIII:321035-321327 2.27e-20 26_[+3(9.04e-11)]_15_[+2(1.95e-11)]_\ 11 chrXIII:352101-352649 9.91e-09 13_[-3(1.15e-08)]_66 chrXIII:362955-363761 9.97e-01 100 chrXIII:372174-372741 3.62e-10 29_[+1(6.73e-09)]_41 chrXIII:378772-379592 8.73e-01 100 chrXIII:420329-420783 2.01e-01 100 chrXIII:463438-463855 2.63e-08 7_[-1(2.03e-12)]_63 chrXIII:480367-480896 6.62e-13 31_[+1(3.68e-12)]_39 chrXIII:504699-505168 1.43e-05 10_[-2(1.13e-09)]_63 chrXIII:551416-552905 6.89e-01 100 chrXIII:572329-573257 9.80e-01 100 chrXIII:573405-573802 5.89e-01 100 chrXIII:586415-587405 1.46e-01 100 chrXIII:626040-626671 4.57e-01 100 chrXIII:731434-733354 7.10e-01 100 chrXIII:747787-748114 9.98e-11 2_[+3(1.07e-09)]_14_[+2(9.59e-09)]_\ 36 chrXIII:754471-756115 6.67e-01 100 chrXIII:767831-768434 2.40e-01 100 chrXIII:808086-808506 2.04e-09 10_[+3(2.16e-08)]_14_[+2(6.67e-08)]_\ 28 chrXIII:837726-838364 7.36e-01 100 chrXIII:887027-887958 1.03e-01 43_[+2(7.25e-05)]_30 chrXIV:63158-64477 2.31e-01 100 chrXIV:95961-96455 3.26e-01 100 chrXIV:102580-103005 7.12e-09 25_[-1(2.46e-10)]_45 chrXIV:104607-105314 8.64e-01 100 chrXIV:173533-174609 3.94e-02 100 chrXIV:241412-241800 9.63e-01 100 chrXIV:302655-304334 7.51e-01 100 chrXIV:330478-331052 5.25e-01 100 chrXIV:374638-375100 2.62e-04 48_[-2(2.10e-08)]_25 chrXIV:442867-444321 1.14e-01 100 chrXIV:444513-445138 5.73e-01 100 chrXIV:495228-495698 3.73e-03 79_[-3(2.90e-05)] chrXIV:546523-547597 7.07e-01 100 chrXIV:560081-560782 9.76e-01 100 chrXIV:568056-568555 9.98e-01 100 chrXIV:569555-570028 5.09e-01 100 chrXIV:575026-576091 7.40e-01 100 chrXIV:576667-577612 9.22e-01 100 chrXIV:585527-586286 1.96e-01 100 chrXIV:602075-602568 1.83e-07 39_[-2(5.93e-12)]_34 chrXIV:631517-632010 8.83e-01 100 chrXIV:632501-632899 2.15e-07 [-1(2.20e-11)]_70 chrXIV:725654-726346 8.81e-01 100 chrXIV:783903-784314 5.43e-01 100 chrXV:79743-80102 2.95e-01 100 chrXV:80333-81158 9.49e-01 100 chrXV:92698-94768 4.82e-01 100 chrXV:110137-110669 6.50e-01 100 chrXV:110875-111177 1.51e-03 31_[+2(3.38e-07)]_42 chrXV:113438-113871 1.65e-01 100 chrXV:161152-161728 6.85e-01 100 chrXV:168020-168439 8.88e-01 100 chrXV:216305-216669 7.47e-01 100 chrXV:226592-226861 9.59e-01 100 chrXV:227988-228583 9.90e-01 100 chrXV:274495-275000 3.96e-07 54_[-1(1.10e-09)]_16 chrXV:281842-283013 6.48e-01 100 chrXV:288093-288402 7.96e-08 61_[-1(1.81e-09)]_9 chrXV:300354-301296 7.87e-01 100 chrXV:340130-340720 6.18e-01 100 chrXV:353927-354275 8.71e-14 [+3(5.70e-11)]_15_[+2(1.36e-10)]_37 chrXV:438448-439007 2.54e-12 39_[-1(3.68e-11)]_31 chrXV:444607-446151 1.42e-01 100 chrXV:464280-465446 2.85e-01 100 chrXV:505057-505470 1.77e-01 100 chrXV:571408-572137 7.12e-01 100 chrXV:594321-594608 6.70e-01 100 chrXV:663352-664791 6.94e-01 100 chrXV:678224-679339 9.69e-02 15_[+1(9.28e-05)]_55 chrXV:710082-710898 6.34e-01 100 chrXV:723190-724571 2.00e-02 100 chrXV:779772-780980 1.70e-01 100 chrXV:797933-799029 1.00e+00 100 chrXV:854001-854752 1.77e-01 100 chrXV:866562-867297 3.25e-01 100 chrXV:899823-900073 6.11e-01 100 chrXV:900224-901257 9.86e-01 100 chrXV:976386-976683 9.02e-01 100 chrXV:978883-979102 6.54e-01 100 chrXV:979752-981460 9.74e-02 100 chrXV:1003916-1004985 2.64e-01 100 chrXV:1025718-1026569 6.89e-01 100 chrXV:1027835-1029638 3.89e-02 100 chrXVI:55848-56346 5.09e-02 100 chrXVI:75615-76707 4.05e-02 100 chrXVI:77187-77339 4.16e-01 100 chrXVI:173043-173975 1.20e-01 100 chrXVI:188334-189208 1.63e-02 13_[-2(1.78e-05)]_60 chrXVI:194152-194647 8.34e-01 100 chrXVI:208031-211118 9.36e-01 100 chrXVI:302688-302897 9.28e-01 100 chrXVI:303090-304020 6.88e-01 100 chrXVI:338696-339191 1.14e-02 [+2(4.26e-05)]_73 chrXVI:354174-355302 8.39e-01 100 chrXVI:378707-378969 4.31e-01 100 chrXVI:404917-408363 7.52e-01 100 chrXVI:432531-434402 4.66e-01 100 chrXVI:435656-436189 3.24e-12 12_[+1(8.06e-10)]_24_[+2(1.15e-08)]_\ 7 chrXVI:520193-520497 4.58e-01 100 chrXVI:559551-560439 3.33e-01 100 chrXVI:571683-572505 3.01e-01 100 chrXVI:581876-582459 9.60e-01 100 chrXVI:622016-622811 8.59e-01 100 chrXVI:689327-689881 1.23e-12 9_[-2(3.00e-10)]_34_[-1(4.75e-10)] chrXVI:699884-700666 4.33e-01 100 chrXVI:731965-732264 7.91e-01 100 chrXVI:744052-744650 1.50e-08 32_[-1(1.99e-09)]_38 chrXVI:769026-769463 1.81e-11 4_[+1(3.83e-10)]_66 chrXVI:775665-776034 8.56e-05 11_[+2(1.15e-08)]_62 chrXVI:786409-787465 7.62e-01 100 chrXVI:794480-794758 2.65e-01 100 chrXVI:795357-796194 2.73e-01 100 chrXVI:810584-810837 1.03e-13 14_[-2(1.37e-08)]_26_[-1(1.97e-10)]_\ 3 chrXVI:819352-820268 7.24e-01 100 chrXVI:821652-822076 2.97e-01 100 chrXVI:860151-860669 6.78e-16 17_[-2(1.05e-08)]_23_[-1(8.94e-10)]_\ 3 chrXVI:880043-880511 2.99e-15 60_[+1(1.30e-11)]_10 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************