******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--IES2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:332301-333089 1.0000 100 chrVIII:126462-127869 1.0000 100 chrXIV:631491-632008 1.0000 100 chrVII:147993-149493 1.0000 100 chrXI:84013-84440 1.0000 100 chrII:9462-9976 1.0000 100 chrIV:1351883-1353076 1.0000 100 chrXVI:810581-810865 1.0000 100 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chrVII:648037-648499 1.0000 100 chrXI:312643-313987 1.0000 100 chrXIV:560153-560787 1.0000 100 chrVIII:115508-116294 1.0000 100 chrX:663653-663753 1.0000 100 chrV:469239-470012 1.0000 100 chrIX:324163-324706 1.0000 100 chrVII:794229-794514 1.0000 100 chrXIII:807986-808524 1.0000 100 chrVII:277039-278697 1.0000 100 chrXIV:568057-568497 1.0000 100 chrXIV:253172-254158 1.0000 100 chrVI:191256-191751 1.0000 100 chrX:651279-651379 1.0000 100 chrXIV:632499-632889 1.0000 100 chrXI:777-1083 1.0000 100 chrXV:472701-473571 1.0000 100 chrXI:158128-159692 1.0000 100 chrXV:841593-842927 1.0000 100 chrX:453664-453764 1.0000 100 chrXV:300873-301639 1.0000 100 chrX:90072-90172 1.0000 100 chrXII:92409-92720 1.0000 100 chrXV:758977-759511 1.0000 100 chrXVI:622337-622870 1.0000 100 chrI:71623-73639 1.0000 100 chrXII:962291-963280 1.0000 100 chrXIV:518847-519135 1.0000 100 chrIX:99666-100017 1.0000 100 chrIV:305434-307855 1.0000 100 chrVIII:119727-121693 1.0000 100 chrX:517672-517772 1.0000 100 chrXVI:404578-408300 1.0000 100 chrXVI:718443-719394 1.0000 100 chrIV:308051-310236 1.0000 100 chrVII:661542-661954 1.0000 100 chrVII:519378-521063 1.0000 100 chrV:443057-443340 1.0000 100 chrXV:109591-110676 1.0000 100 chrII:236504-237432 1.0000 100 chrXII:374209-374695 1.0000 100 chrX:58990-59090 1.0000 100 chrXVI:829871-830549 1.0000 100 chrIV:129004-131014 1.0000 100 chrIV:1441105-1443384 1.0000 100 chrIV:340197-341664 1.0000 100 chrII:266210-266724 1.0000 100 chrVIII:132800-133364 1.0000 100 chrXVI:731601-732289 1.0000 100 chrXVI:172916-174100 1.0000 100 chrX:703274-703374 1.0000 100 chrXIII:754434-755835 1.0000 100 chrII:45586-46840 1.0000 100 chrIV:489571-491218 1.0000 100 chrVII:122017-122672 1.0000 100 chrXII:448506-449044 1.0000 100 chrIX:210665-211093 1.0000 100 chrX:374176-374276 1.0000 100 chrVI:221797-222123 1.0000 100 chrIV:331045-333369 1.0000 100 chrIV:568529-569516 1.0000 100 chrXIII:873340-873669 1.0000 100 chrII:415546-416118 1.0000 100 chrIV:491438-492622 1.0000 100 chrXV:904770-905746 1.0000 100 chrII:301105-301523 1.0000 100 chrIV:465263-470796 1.0000 100 chrXII:837661-839406 1.0000 100 chrIX:299832-300522 1.0000 100 chrXIII:372203-372759 1.0000 100 chrVIII:134016-134639 1.0000 100 chrIV:118434-118987 1.0000 100 chrXIII:549871-553439 1.0000 100 chrVIII:210806-211807 1.0000 100 chrIV:1300638-1301300 1.0000 100 chrIII:123374-123809 1.0000 100 chrIV:992673-993347 1.0000 100 chrXII:809751-815801 1.0000 100 chrV:363638-364098 1.0000 100 chrIV:221104-222350 1.0000 100 chrXI:379450-379918 1.0000 100 chrXIV:715803-716656 1.0000 100 chrX:348873-348973 1.0000 100 chrIV:802569-802838 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--IES2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--IES2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--IES2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--IES2/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAWYGMYCMMDVSSRGRWTCGAAC MEME-1 width = 29 sites = 84 llr = 1480 E-value = 1.4e-274 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYCMMDVSSRGRWTCGAAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 888887651:3123243113:64::19a: pos.-specific C 1::::::15:44545:453:::2:7:::a probability G 1:11:111:82112233266a42::9::: matrix T 111:122342142113:2::::3a3:1:: bits 2.4 * * 2.2 * * 1.9 * * * 1.7 * * * ** Relative 1.4 * ****** Entropy 1.2 * * ****** (25.4 bits) 1.0 * * **** ****** 0.7 **** * **** ****** 0.5 ******* ** ** ****** ****** 0.2 ********************** ****** 0.0 ----------------------------- Multilevel AAAAAAAACGCCCCCACCGGGAATCGAAC consensus TTT AT AAGAGCA GT T sequence TGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYCMMDVSSRGRWTCGAAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:632499-632889 - 8 4.71e-12 CTGAAATAAG AAAAAAAACGACCCCAGTGAGGGTTGAAC TCACGAT chrXV:226442-226862 + 1 4.71e-12 . AAAAAATTTGCGCAAGCCCGGAATCGAAC CGGGGGCCCA chrV:443057-443340 + 46 3.20e-11 AGATTTTCAA AAAAAATATGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrXIII:463427-463879 - 2 3.20e-11 CTGGTCTGAT AAAAAAATCTCCGCGACGGGGAATTGAAC C chrVII:544219-544901 + 59 3.20e-11 GCAGAAAAAG AAAAAAATCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrIX:336062-336639 + 41 3.20e-11 CAGTTATGGT AAAAAAATCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrXV:571687-572404 - 14 3.20e-11 TCAAATCAGC AAAAAAATCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrXII:1051923-1052209 + 47 4.99e-11 TTAAAGTAAA AAAAATAATGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrVI:137150-137810 + 48 1.01e-10 TGATTTTGAA TAAAAAAACGACCCCAGTGAGGGTTGAAC TCACGATCTT chrXII:975804-976102 + 72 1.01e-10 TAATGCAAAA AAAATAAACGACCCCAGTGAGGGTTGAAC chrIV:568529-569516 - 43 1.16e-10 TATCAATTAA AAAAAATTCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrX:523636-523736 + 70 1.16e-10 AAGGGAAATA AAAAATAACGACAACTGCAGGACTCGAAC CT chrIX:174735-175516 - 8 1.16e-10 CTTGCCGAAG AAAAAAATTGCTTCCAATCGGATTTGAAC CGATGAT chrIX:325500-326095 - 53 1.16e-10 CTTTCAAAGA AAAAAAATTGCTTCCAATCGGATTTGAAC CGATGATCTC chrXII:167703-168246 + 12 1.16e-10 AAGAAAAAGA AAAAATAACGACAACTGCAGGACTCGAAC CTGCGCGGGC chrII:226981-227352 - 20 1.16e-10 TTACTGTCCA AAAAATAACGACAACTGCAGGACTCGAAC CTGCGCGGGC chrXVI:810581-810865 - 56 1.16e-10 CTAATTTAGT AAAAATTACGACCCCAGTGAGGGTTGAAC TCACGATCTT chrXIII:290557-291117 - 65 1.33e-10 TCTTCAA AAAGAAAACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrXVI:210007-210456 + 3 1.33e-10 AA AAAGAAAACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrXII:214686-215063 + 51 1.53e-10 ATAAAAGTAA AAAATAAATGGACGCAACCGGAATCGAAC CGATGACCTC chrXVI:435528-436199 + 72 1.53e-10 TTCTTTGGAA AAAAAGAAAGCTCGCACTCAGGATCGAAC chrXII:374209-374695 - 5 1.75e-10 TTGTCGGAGC AAAAAAATCTTCCCCGCCAGGACTTGAAC CTGG chrV:130828-131398 + 11 1.75e-10 TGAGCGGGGG AAAAAAATAGGTCTTACCCGGATTCGAAC CGGGGTTGTT chrXIV:96000-96461 + 53 1.75e-10 CAATGCCATC AAAAAATTTGAGCGGTACGAGAATCGAAC CCGTGTCCCC chrV:249784-250866 - 62 2.59e-10 TGTAAAAATG AATAAAAAAGGTCCTACCCGGATTCGAAC CGGGGTTGTC chrIV:1351883-1353076 + 29 3.36e-10 GTTGTTTAAA AAAAAGATAGCCCTGTAGGGGGCTCGAAC CCCTAACCTT chrXVI:860148-860682 - 64 3.81e-10 AGCAAAAA ATAAAATCTGCGCAAGCCCGGAATCGAAC CGGGGGCCCA chrXIII:372203-372759 + 6 4.89e-10 AGTGC TAAAAAAATGATTTCGCCCAGGATCGAAC TGGGGACGTT chrII:266210-266724 - 13 4.89e-10 TTTCAGTATT CAAAAAAATGCTTCCAATCGGATTTGAAC CGATGATCTC chrXI:490763-491345 - 16 5.54e-10 TATAAAAGTA AAAAAATTCTTCCCCGCCAGGACTTGAAC CTGGAATCTT chrIV:437553-438142 - 36 6.26e-10 TTGGGAATAT AAAAATGACGACAACTGCAGGACTCGAAC CTGCGCGGGC chrV:176856-177447 - 49 6.26e-10 GTAGCCATCA AAAAAGTACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrVII:738775-739586 - 45 7.07e-10 TGCATTCTAA AAAGTAAATGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrVII:122017-122672 - 27 7.97e-10 ATAGAACAAA AAAAGAATAGCCCTGTAGGGGGCTCGAAC CCCTAACCTT chrX:422676-422776 - 58 7.97e-10 TCACAAAAAA AGAAAATGTGCTCCAGGGGAGGTTCGAAC TCTCGACCTT chrIV:802569-802838 + 70 1.01e-09 TAGAGTAAAA ATAAAAAGAGGTCCTACCCGGATTCGAAC CG chrVI:180685-181253 + 47 1.01e-09 TATCCTTAAA AAAAGGACTGCGCAAGCCCGGAATCGAAC CGGGGGCCCA chrXV:353730-354302 + 67 1.01e-09 AAAGTGCACG ACAAAAAATGCTTCCAATCGGATTTGAAC CGATG chrIV:488442-489207 + 15 1.28e-09 TTACGATAAA AAAGATTCTGATCCAACCGAGGTTCGAAC TCGGGATCTT chrVII:730951-731439 - 45 1.28e-09 CTCATTTCAA GCAAAAAACGACCCCAGTGAGGGTTGAAC TCACGATCTT chrX:414744-414844 - 59 1.80e-09 GGGCAAGAAA AAAATATTAGCCCTGTAGGGGGCTCGAAC CCCTAACCTT chrXVI:744064-744654 - 26 1.80e-09 ACTTTAGGGA AAAAATTTTGCCACCTGTCAGAATTGAAC TAACGACCTT chrIV:619671-620215 + 68 2.01e-09 GAAAAATGTA TAAAAAATCTTCCCCGCCAGGACTTGAAC CTGG chrXII:592364-592714 + 22 2.51e-09 GCAAAAAACA AAAAATAATGAGAGCTAAGGGATTCGAAC CCTTGCATCC chrXII:732011-732305 - 62 2.51e-09 AGAAAAAGCA AAAAATAATGAGAGCTAAGGGATTCGAAC CCTTGCATCC chrIII:168057-168552 + 39 2.81e-09 AAATCTGTAT TCAAAAAAAGGTCCTACCCGGATTCGAAC CGGGGTTGTC chrXIII:747696-748139 + 17 2.81e-09 AAAAAAAATA CTAAAAAACACTCACGATGGGGGTCGAAC CCATAATCTT chrX:374176-374276 + 16 3.13e-09 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAAC CCATAATCTT chrII:405667-406197 - 47 3.13e-09 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAAC CCATAATCTT chrXVI:689353-689896 - 52 3.13e-09 TAATTTCAAA AAATAATACGACACCAGCAGGATTTGAAC CAGCGCGGGC chrVII:541715-542174 - 7 3.13e-09 GAGGTAAGAA AAAGAACACTCCGATACGGGGAGTCGAAC CCCGGT chrXIII:131558-132106 + 35 3.13e-09 AAAAAAGAAG AAACAAAGCACTCACGATGGGGGTCGAAC CCATAATCTT chrIII:90787-91092 - 63 3.88e-09 GTTGAGGAA AAAAATAATGGTTGCTAAGAGATTCGAAC TCTTGCATCT chrVII:422885-423552 - 17 3.88e-09 TTAAATGGAA AAAAATAATGGTTGCTAAGAGATTCGAAC TCTTGCATCT chrXIII:420317-420858 + 43 4.79e-09 TAACGGCTGA GATAAAAATGATTTCGCCCAGGATCGAAC TGGGGACGTT chrV:487098-487601 + 24 4.79e-09 GAAAAAATAT AACGAATACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrVII:823354-823708 - 54 5.31e-09 AATGTAATCT TCAAAAAATGATTTCGCCCAGGATCGAAC TGGGGACGTT chrIV:1175579-1176153 - 65 6.53e-09 CGTGCTC GGCAAAAATGCTCCAGGGGAGGTTCGAAC TCTCGACCTT chrVI:191256-191751 + 52 7.23e-09 AAATTTAAAA AAGAAATGCGTCACAGACAGGATTCGAAC CTGCGCAGGT chrXV:274473-275007 - 63 7.23e-09 TTCACAAAA AAGAAATGCGTCACAGACAGGATTCGAAC CTGCGCAGGT chrVIII:358245-358774 + 11 8.00e-09 TAAATCGTTA AAAAAATATGCGAATTCTGTGGATCGAAC ACAGGACCTC chrVII:774119-774737 - 23 8.00e-09 ATTAAAAGTA AAAAAATTTGGACGAGTCCGGAATCGAAC CGGAGACCTC chrVII:412027-412593 + 26 1.31e-08 TCAGAAAAAA ATAAAACTTGATTTCGCCCAGGATCGAAC TGGGGACGTT chrXV:663268-664298 + 71 1.31e-08 ATAAAATATT CTTAAAAACGATTTCGCCCAGGATCGAAC T chrXIV:725932-726354 + 33 1.31e-08 CAAAATAAAA AAAAATACTGAAGGATGCGAGGTTCGAAC TCGCGCGGAC chrX:538524-538624 - 23 1.31e-08 AAAAAAAAAA ATAATCAACGTTCCGTACGGGACTCGAAC CCGCAGTCTT chrXV:464285-464768 - 55 1.58e-08 AAATAATCAA AAATAAAAGGGGCGAGCTGGGAATTGAAC CCAGGGCCTC chrIII:123374-123809 + 28 1.91e-08 ACATTGTAAA AACAATGTGGGGCGAGCCGGGACTCGAAC CCGGGACCTC chrXVI:769010-769473 + 8 1.91e-08 CAAAAAA GTAAAGAACTCCTCATAGGGGGCTCGAAC CCCTGACATT chrVII:287005-287723 + 28 2.10e-08 CACTTGCAGT ATAAAAAATGAAACGGACAGGAATTGAAC CTGCAACCCT chrVII:857094-857669 + 39 3.95e-08 TATTGAAAAA AAAATTATTGGTTGCTAAGAGATTCGAAC TCTTGCATCT chrXIII:168687-169014 - 63 5.58e-08 AAAAGGGAA AAAAAATATCTCCCGGGGGCGAGTCGAAC GCCCGATCTC chrXIII:807986-808524 + 33 7.17e-08 ATACGAAAAA TGAAGGGAAGGTCCCACCCGGATTCGAAC TGGGGTTGTT chrVIII:475471-475910 + 58 1.08e-07 AAAAAATCGA TGTTAAAATGTTCCAACCGAGGATCGAAC TCGGGACCTT chrVIII:237633-238083 + 32 1.36e-07 AGTGTGTGTT TACAAAAATGCGAATTCTGTGGATCGAAC ACAGGACCTC chrXVI:559909-560453 + 59 1.59e-07 AAAATACAAA AATAGAAATGCGAATTCTGTGGATCGAAC ACAGGACCTC chrXII:92409-92720 - 51 2.15e-07 CCTGTTTAGT CAGGAAGTCGCCCAAAGCGAGAATCATAC CACTAGACCA chrI:138958-139345 - 68 2.15e-07 TAAT CAGGAAGTCGCCCAAAGCGAGAATCATAC CACTAGACCA chrVIII:388667-389208 + 63 2.15e-07 CCTGTTTAGG CAGGAAGTCGCCCAAAGCGAGAATCATAC CACTAGACC chrXIV:546560-547688 - 37 2.15e-07 CCTGTTTAGG CAGGAAGTCGCCCAAAGCGAGAATCATAC CACTAGACCA chrXIII:195939-196305 + 53 2.15e-07 CCTGTTTAAT CAGGAAGTCGCCCAAAGCGAGAATCATAC CACTAGACCA chrII:347400-347937 - 48 3.83e-07 ATATTAAAAA AATATTACTGAAGGATGCGAGGTTCGAAC TCGCGCGGAC chrV:311719-312305 + 53 1.16e-06 GGTACAAAAA GATTTCATTGGACGCAACCGGAATCGAAC CGATGACCTC chrXII:930579-931887 - 56 1.85e-06 ATGGGTACTG AAGATGTCCGTCTAGCCCCAGAATTGAAC CAAGCTATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYCMMDVSSRGRWTCGAAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:632499-632889 4.7e-12 7_[-1]_64 chrXV:226442-226862 4.7e-12 [+1]_71 chrV:443057-443340 3.2e-11 45_[+1]_26 chrXIII:463427-463879 3.2e-11 1_[-1]_70 chrVII:544219-544901 3.2e-11 58_[+1]_13 chrIX:336062-336639 3.2e-11 40_[+1]_31 chrXV:571687-572404 3.2e-11 13_[-1]_58 chrXII:1051923-1052209 5e-11 46_[+1]_25 chrVI:137150-137810 1e-10 47_[+1]_24 chrXII:975804-976102 1e-10 71_[+1] chrIV:568529-569516 1.2e-10 42_[-1]_29 chrX:523636-523736 1.2e-10 69_[+1]_2 chrIX:174735-175516 1.2e-10 7_[-1]_64 chrIX:325500-326095 1.2e-10 52_[-1]_19 chrXII:167703-168246 1.2e-10 11_[+1]_60 chrII:226981-227352 1.2e-10 19_[-1]_52 chrXVI:810581-810865 1.2e-10 55_[-1]_16 chrXIII:290557-291117 1.3e-10 64_[-1]_7 chrXVI:210007-210456 1.3e-10 2_[+1]_69 chrXII:214686-215063 1.5e-10 50_[+1]_21 chrXVI:435528-436199 1.5e-10 71_[+1] chrXII:374209-374695 1.7e-10 4_[-1]_67 chrV:130828-131398 1.7e-10 10_[+1]_61 chrXIV:96000-96461 1.7e-10 52_[+1]_19 chrV:249784-250866 2.6e-10 61_[-1]_10 chrIV:1351883-1353076 3.4e-10 28_[+1]_43 chrXVI:860148-860682 3.8e-10 63_[-1]_8 chrXIII:372203-372759 4.9e-10 5_[+1]_66 chrII:266210-266724 4.9e-10 12_[-1]_59 chrXI:490763-491345 5.5e-10 15_[-1]_56 chrIV:437553-438142 6.3e-10 35_[-1]_36 chrV:176856-177447 6.3e-10 48_[-1]_23 chrVII:738775-739586 7.1e-10 44_[-1]_27 chrVII:122017-122672 8e-10 26_[-1]_45 chrX:422676-422776 8e-10 57_[-1]_14 chrIV:802569-802838 1e-09 69_[+1]_2 chrVI:180685-181253 1e-09 46_[+1]_25 chrXV:353730-354302 1e-09 66_[+1]_5 chrIV:488442-489207 1.3e-09 14_[+1]_57 chrVII:730951-731439 1.3e-09 44_[-1]_27 chrX:414744-414844 1.8e-09 58_[-1]_13 chrXVI:744064-744654 1.8e-09 25_[-1]_46 chrIV:619671-620215 2e-09 67_[+1]_4 chrXII:592364-592714 2.5e-09 21_[+1]_50 chrXII:732011-732305 2.5e-09 61_[-1]_10 chrIII:168057-168552 2.8e-09 38_[+1]_33 chrXIII:747696-748139 2.8e-09 16_[+1]_55 chrX:374176-374276 3.1e-09 15_[+1]_56 chrII:405667-406197 3.1e-09 46_[-1]_25 chrXVI:689353-689896 3.1e-09 51_[-1]_20 chrVII:541715-542174 3.1e-09 6_[-1]_65 chrXIII:131558-132106 3.1e-09 34_[+1]_37 chrIII:90787-91092 3.9e-09 62_[-1]_9 chrVII:422885-423552 3.9e-09 16_[-1]_55 chrXIII:420317-420858 4.8e-09 42_[+1]_29 chrV:487098-487601 4.8e-09 23_[+1]_48 chrVII:823354-823708 5.3e-09 53_[-1]_18 chrIV:1175579-1176153 6.5e-09 64_[-1]_7 chrVI:191256-191751 7.2e-09 51_[+1]_20 chrXV:274473-275007 7.2e-09 62_[-1]_9 chrVIII:358245-358774 8e-09 10_[+1]_61 chrVII:774119-774737 8e-09 22_[-1]_49 chrVII:412027-412593 1.3e-08 25_[+1]_46 chrXV:663268-664298 1.3e-08 70_[+1]_1 chrXIV:725932-726354 1.3e-08 32_[+1]_39 chrX:538524-538624 1.3e-08 22_[-1]_49 chrXV:464285-464768 1.6e-08 54_[-1]_17 chrIII:123374-123809 1.9e-08 27_[+1]_44 chrXVI:769010-769473 1.9e-08 7_[+1]_64 chrVII:287005-287723 2.1e-08 27_[+1]_44 chrVII:857094-857669 3.9e-08 38_[+1]_33 chrXIII:168687-169014 5.6e-08 62_[-1]_9 chrXIII:807986-808524 7.2e-08 32_[+1]_39 chrVIII:475471-475910 1.1e-07 57_[+1]_14 chrVIII:237633-238083 1.4e-07 31_[+1]_40 chrXVI:559909-560453 1.6e-07 58_[+1]_13 chrXII:92409-92720 2.2e-07 50_[-1]_21 chrI:138958-139345 2.2e-07 67_[-1]_4 chrVIII:388667-389208 2.2e-07 62_[+1]_9 chrXIV:546560-547688 2.2e-07 36_[-1]_35 chrXIII:195939-196305 2.2e-07 52_[+1]_19 chrII:347400-347937 3.8e-07 47_[-1]_24 chrV:311719-312305 1.2e-06 52_[+1]_19 chrXII:930579-931887 1.9e-06 55_[-1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYCMMDVSSRGRWTCGAAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAWYGMYCMMDVSSRGRWTCGAAC width=29 seqs=84 chrXIV:632499-632889 ( 8) AAAAAAAACGACCCCAGTGAGGGTTGAAC 1 chrXV:226442-226862 ( 1) AAAAAATTTGCGCAAGCCCGGAATCGAAC 1 chrV:443057-443340 ( 46) AAAAAATATGGTCTCTAGCGGGATCGAAC 1 chrXIII:463427-463879 ( 2) AAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrVII:544219-544901 ( 59) AAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrIX:336062-336639 ( 41) AAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrXV:571687-572404 ( 14) AAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrXII:1051923-1052209 ( 47) AAAAATAATGGTCTCTAGCGGGATCGAAC 1 chrVI:137150-137810 ( 48) TAAAAAAACGACCCCAGTGAGGGTTGAAC 1 chrXII:975804-976102 ( 72) AAAATAAACGACCCCAGTGAGGGTTGAAC 1 chrIV:568529-569516 ( 43) AAAAAATTCTCCGCGACGGGGAATTGAAC 1 chrX:523636-523736 ( 70) AAAAATAACGACAACTGCAGGACTCGAAC 1 chrIX:174735-175516 ( 8) AAAAAAATTGCTTCCAATCGGATTTGAAC 1 chrIX:325500-326095 ( 53) AAAAAAATTGCTTCCAATCGGATTTGAAC 1 chrXII:167703-168246 ( 12) AAAAATAACGACAACTGCAGGACTCGAAC 1 chrII:226981-227352 ( 20) AAAAATAACGACAACTGCAGGACTCGAAC 1 chrXVI:810581-810865 ( 56) AAAAATTACGACCCCAGTGAGGGTTGAAC 1 chrXIII:290557-291117 ( 65) AAAGAAAACTCCGATACGGGGAGTCGAAC 1 chrXVI:210007-210456 ( 3) AAAGAAAACTCCGATACGGGGAGTCGAAC 1 chrXII:214686-215063 ( 51) AAAATAAATGGACGCAACCGGAATCGAAC 1 chrXVI:435528-436199 ( 72) AAAAAGAAAGCTCGCACTCAGGATCGAAC 1 chrXII:374209-374695 ( 5) AAAAAAATCTTCCCCGCCAGGACTTGAAC 1 chrV:130828-131398 ( 11) AAAAAAATAGGTCTTACCCGGATTCGAAC 1 chrXIV:96000-96461 ( 53) AAAAAATTTGAGCGGTACGAGAATCGAAC 1 chrV:249784-250866 ( 62) AATAAAAAAGGTCCTACCCGGATTCGAAC 1 chrIV:1351883-1353076 ( 29) AAAAAGATAGCCCTGTAGGGGGCTCGAAC 1 chrXVI:860148-860682 ( 64) ATAAAATCTGCGCAAGCCCGGAATCGAAC 1 chrXIII:372203-372759 ( 6) TAAAAAAATGATTTCGCCCAGGATCGAAC 1 chrII:266210-266724 ( 13) CAAAAAAATGCTTCCAATCGGATTTGAAC 1 chrXI:490763-491345 ( 16) AAAAAATTCTTCCCCGCCAGGACTTGAAC 1 chrIV:437553-438142 ( 36) AAAAATGACGACAACTGCAGGACTCGAAC 1 chrV:176856-177447 ( 49) AAAAAGTACTCCGATACGGGGAGTCGAAC 1 chrVII:738775-739586 ( 45) AAAGTAAATGGTCTCTAGCGGGATCGAAC 1 chrVII:122017-122672 ( 27) AAAAGAATAGCCCTGTAGGGGGCTCGAAC 1 chrX:422676-422776 ( 58) AGAAAATGTGCTCCAGGGGAGGTTCGAAC 1 chrIV:802569-802838 ( 70) ATAAAAAGAGGTCCTACCCGGATTCGAAC 1 chrVI:180685-181253 ( 47) AAAAGGACTGCGCAAGCCCGGAATCGAAC 1 chrXV:353730-354302 ( 67) ACAAAAAATGCTTCCAATCGGATTTGAAC 1 chrIV:488442-489207 ( 15) AAAGATTCTGATCCAACCGAGGTTCGAAC 1 chrVII:730951-731439 ( 45) GCAAAAAACGACCCCAGTGAGGGTTGAAC 1 chrX:414744-414844 ( 59) AAAATATTAGCCCTGTAGGGGGCTCGAAC 1 chrXVI:744064-744654 ( 26) AAAAATTTTGCCACCTGTCAGAATTGAAC 1 chrIV:619671-620215 ( 68) TAAAAAATCTTCCCCGCCAGGACTTGAAC 1 chrXII:592364-592714 ( 22) AAAAATAATGAGAGCTAAGGGATTCGAAC 1 chrXII:732011-732305 ( 62) AAAAATAATGAGAGCTAAGGGATTCGAAC 1 chrIII:168057-168552 ( 39) TCAAAAAAAGGTCCTACCCGGATTCGAAC 1 chrXIII:747696-748139 ( 17) CTAAAAAACACTCACGATGGGGGTCGAAC 1 chrX:374176-374276 ( 16) AAACAAAGCACTCACGATGGGGGTCGAAC 1 chrII:405667-406197 ( 47) AAACAAAGCACTCACGATGGGGGTCGAAC 1 chrXVI:689353-689896 ( 52) AAATAATACGACACCAGCAGGATTTGAAC 1 chrVII:541715-542174 ( 7) AAAGAACACTCCGATACGGGGAGTCGAAC 1 chrXIII:131558-132106 ( 35) AAACAAAGCACTCACGATGGGGGTCGAAC 1 chrIII:90787-91092 ( 63) AAAAATAATGGTTGCTAAGAGATTCGAAC 1 chrVII:422885-423552 ( 17) AAAAATAATGGTTGCTAAGAGATTCGAAC 1 chrXIII:420317-420858 ( 43) GATAAAAATGATTTCGCCCAGGATCGAAC 1 chrV:487098-487601 ( 24) AACGAATACTCCGATACGGGGAGTCGAAC 1 chrVII:823354-823708 ( 54) TCAAAAAATGATTTCGCCCAGGATCGAAC 1 chrIV:1175579-1176153 ( 65) GGCAAAAATGCTCCAGGGGAGGTTCGAAC 1 chrVI:191256-191751 ( 52) AAGAAATGCGTCACAGACAGGATTCGAAC 1 chrXV:274473-275007 ( 63) AAGAAATGCGTCACAGACAGGATTCGAAC 1 chrVIII:358245-358774 ( 11) AAAAAATATGCGAATTCTGTGGATCGAAC 1 chrVII:774119-774737 ( 23) AAAAAATTTGGACGAGTCCGGAATCGAAC 1 chrVII:412027-412593 ( 26) ATAAAACTTGATTTCGCCCAGGATCGAAC 1 chrXV:663268-664298 ( 71) CTTAAAAACGATTTCGCCCAGGATCGAAC 1 chrXIV:725932-726354 ( 33) AAAAATACTGAAGGATGCGAGGTTCGAAC 1 chrX:538524-538624 ( 23) ATAATCAACGTTCCGTACGGGACTCGAAC 1 chrXV:464285-464768 ( 55) AAATAAAAGGGGCGAGCTGGGAATTGAAC 1 chrIII:123374-123809 ( 28) AACAATGTGGGGCGAGCCGGGACTCGAAC 1 chrXVI:769010-769473 ( 8) GTAAAGAACTCCTCATAGGGGGCTCGAAC 1 chrVII:287005-287723 ( 28) ATAAAAAATGAAACGGACAGGAATTGAAC 1 chrVII:857094-857669 ( 39) AAAATTATTGGTTGCTAAGAGATTCGAAC 1 chrXIII:168687-169014 ( 63) AAAAAATATCTCCCGGGGGCGAGTCGAAC 1 chrXIII:807986-808524 ( 33) TGAAGGGAAGGTCCCACCCGGATTCGAAC 1 chrVIII:475471-475910 ( 58) TGTTAAAATGTTCCAACCGAGGATCGAAC 1 chrVIII:237633-238083 ( 32) TACAAAAATGCGAATTCTGTGGATCGAAC 1 chrXVI:559909-560453 ( 59) AATAGAAATGCGAATTCTGTGGATCGAAC 1 chrXII:92409-92720 ( 51) CAGGAAGTCGCCCAAAGCGAGAATCATAC 1 chrI:138958-139345 ( 68) CAGGAAGTCGCCCAAAGCGAGAATCATAC 1 chrVIII:388667-389208 ( 63) CAGGAAGTCGCCCAAAGCGAGAATCATAC 1 chrXIV:546560-547688 ( 37) CAGGAAGTCGCCCAAAGCGAGAATCATAC 1 chrXIII:195939-196305 ( 53) CAGGAAGTCGCCCAAAGCGAGAATCATAC 1 chrII:347400-347937 ( 48) AATATTACTGAAGGATGCGAGGTTCGAAC 1 chrV:311719-312305 ( 53) GATTTCATTGGACGCAACCGGAATCGAAC 1 chrXII:930579-931887 ( 56) AAGATGTCCGTCTAGCCCCAGAATTGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYCMMDVSSRGRWTCGAAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 7.59951 E= 1.4e-274 127 -99 -166 -171 138 -199 -199 -171 131 -199 -99 -190 134 -240 -53 -271 144 -1304 -199 -154 117 -298 -118 -71 105 -298 -99 -39 75 -140 -118 5 -154 126 -298 42 -271 -398 204 -90 -25 122 1 -154 -212 122 -53 20 -90 147 -40 -90 -7 106 -18 -112 -39 130 -29 -112 42 -398 60 -12 5 114 41 -470 -239 134 34 -46 -125 71 157 -1304 10 -398 171 -312 -1304 -1304 241 -1304 102 -1304 97 -1304 38 -29 -8 -25 -1304 -1304 -1304 168 -1304 197 -1304 -25 -239 -1304 232 -1304 159 -1304 -1304 -239 168 -1304 -1304 -1304 -1304 241 -1304 -1304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYCMMDVSSRGRWTCGAAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 84 E= 1.4e-274 0.750000 0.095238 0.059524 0.095238 0.809524 0.047619 0.047619 0.095238 0.773810 0.047619 0.095238 0.083333 0.785714 0.035714 0.130952 0.047619 0.845238 0.000000 0.047619 0.107143 0.702381 0.023810 0.083333 0.190476 0.642857 0.023810 0.095238 0.238095 0.523810 0.071429 0.083333 0.321429 0.107143 0.452381 0.023810 0.416667 0.047619 0.011905 0.773810 0.166667 0.261905 0.440476 0.190476 0.107143 0.071429 0.440476 0.130952 0.357143 0.166667 0.523810 0.142857 0.166667 0.297619 0.392857 0.166667 0.142857 0.238095 0.464286 0.154762 0.142857 0.416667 0.011905 0.285714 0.285714 0.321429 0.416667 0.250000 0.011905 0.059524 0.476190 0.238095 0.226190 0.130952 0.309524 0.559524 0.000000 0.333333 0.011905 0.619048 0.035714 0.000000 0.000000 1.000000 0.000000 0.630952 0.000000 0.369048 0.000000 0.404762 0.154762 0.178571 0.261905 0.000000 0.000000 0.000000 1.000000 0.000000 0.738095 0.000000 0.261905 0.059524 0.000000 0.940476 0.000000 0.940476 0.000000 0.000000 0.059524 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYCMMDVSSRGRWTCGAAC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAA[AT][AT][CT]G[CA][CT]C[CA][CA][AGT][CAG][CGT][GC][GA]G[AG][AT]T[CT]GAAC -------------------------------------------------------------------------------- Time 351.65 secs. ******************************************************************************** ******************************************************************************** MOTIF GSYYHSKTGGCBYAGTKGKTWAAGSSHNC MEME-2 width = 29 sites = 61 llr = 1019 E-value = 2.7e-152 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSYYHSKTGGCBYAGTKGKTWAAGSSHNC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1222:3:::1a1::::36552::422 pos.-specific C 144444::::754:::2::1:12155235 probability G 8421124:7a:31:9:5a5:122644122 matrix T :144324a::334::a3:463211:1331 bits 2.4 * * 2.2 * * 1.9 * * * 1.7 * * ** * Relative 1.4 * * * *** * Entropy 1.2 * **** *** * * (24.1 bits) 1.0 * **** *** * ** 0.7 ** ***** *** ** *** 0.5 *** ****** ******** *** * 0.2 ************************** * 0.0 ----------------------------- Multilevel GGTTCCGTGGCCTAGTGGGTAAAGCCATC consensus CCCTGT A TGC T TATGG GGTC sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYYHSKTGGCBYAGTKGKTWAAGSSHNC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrII:197176-197831 + 41 2.88e-13 CAGTAATCAA GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:734593-734983 + 64 2.88e-13 AACAAAGTTT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAAT chrXIV:602043-602567 + 57 2.88e-13 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXVI:819134-819939 + 43 2.88e-13 ACAATAGAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrIX:183291-183683 - 48 2.88e-13 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:656830-657214 - 6 3.65e-11 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTA chrIV:1150658-1151182 - 43 4.29e-11 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTAAGGCGATG CCTGCTATTT chrXI:379450-379918 + 46 1.09e-10 CAGATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXIII:372203-372759 - 59 1.09e-10 AATAAAACCT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXIII:586487-586899 - 38 1.09e-10 AACTTACTAT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:307939-308477 - 31 1.09e-10 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVII:823354-823708 + 1 1.09e-10 . GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrIX:325500-326095 + 1 3.95e-10 . GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrVIII:132800-133364 - 47 5.17e-10 TATAATAAGT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXIII:258981-259454 - 44 5.17e-10 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrIV:1305396-1305886 + 39 5.17e-10 TACAAATTAA GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrIII:227736-228231 + 9 8.71e-10 ATCGAAAT GGCACTATGGCCGAGTGGTTAAGGCGAGA GACTCGAATG chrXII:605151-605644 - 57 1.83e-09 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTAGAGCTTCG TGCTTATAGC chrIII:127519-127891 + 61 2.32e-09 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXI:74428-74869 + 26 2.32e-09 ATAGCAATTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXVI:810581-810865 + 3 2.32e-09 GC GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrIV:1175579-1176153 + 13 5.14e-09 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrX:390911-391011 - 4 5.14e-09 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTC chrX:422676-422776 + 6 5.14e-09 TGTAT GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrX:531456-531556 + 46 6.39e-09 CAATTAGTGA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXVI:860148-860682 + 14 6.39e-09 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXV:226442-226862 - 51 6.39e-09 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrX:396517-396617 - 39 6.39e-09 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXV:281734-282577 + 59 6.39e-09 ACATGAAAGC GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVI:162035-162389 + 66 6.39e-09 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCC chrVII:115197-115749 + 65 7.91e-09 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTT chrIV:1201524-1201967 + 55 9.75e-09 CAAATAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrX:414744-414844 + 7 9.75e-09 GAATTA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrXIII:480376-480975 - 40 9.75e-09 ACAATAAGTA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrXVI:581801-582371 + 26 9.75e-09 CAACAAAAGA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrXIV:374696-375116 + 13 1.20e-08 AGAAAAATAA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrIV:1095119-1095715 - 66 1.20e-08 ATGTTA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVII:661542-661954 + 51 1.32e-08 GTAAAAATTT GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrVII:1004026-1004420 + 43 1.32e-08 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrX:424275-424375 - 40 1.78e-08 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXI:84013-84440 + 32 1.78e-08 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrVII:205059-205943 + 70 2.88e-08 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TG chrXVI:622337-622870 - 50 4.55e-08 ATTCTGATAT GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVIII:134016-134639 + 44 4.97e-08 AGTAAGTTCC GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrV:249784-250866 + 11 4.97e-08 CAGTTGTACT GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrIV:488442-489207 - 68 6.46e-08 TTCC GGTCCAATGGTCCAGTGGTTCAAGACGTC GCCTTTACAC chrVI:210468-210929 - 31 7.04e-08 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTGTAA chrX:542754-542854 - 61 7.04e-08 CAATTAAATA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTGTAA chrXIII:837709-838191 + 28 7.04e-08 AGTTAATTGA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTGTAA chrVI:167213-167705 + 28 7.04e-08 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTGTAA chrV:130828-131398 - 62 1.26e-07 ATAATTAAGA GGTTTTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrII:350584-351041 + 65 1.26e-07 TCAATAAAAG GGTTTTATAGTGTAGTGGTTATCACTTTC GGTTTTG chrX:517672-517772 - 35 2.17e-07 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAAGCGCGCAGG GCTCATAACC chrXVI:338471-339329 - 41 2.17e-07 ATGATTTAGC AGCGCCGTGGCGCAGTGGAAGCGCGCAGG GCTCATAACC chrIII:149726-150204 + 5 2.17e-07 GTTG AGCGCCGTGGCGCAGTGGAAGCGCGCAGG GCTCATAACC chrX:374176-374276 - 67 2.52e-07 TAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrXIII:747696-748139 - 68 2.52e-07 ACTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrXV:340134-340617 - 18 4.79e-07 TCAAGATCTG TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrXV:110847-111195 - 34 6.69e-07 CAATTAACCC GGGCGGTTAGTGTAGTGGTTATCATCCCA CCCTTCCAAG chrV:78009-79458 + 31 1.41e-06 GTAACATGGT CCATCGATGGTGTCGTCGGTAGAACCTTG TACAAGAACG chrIV:1075291-1075758 - 42 2.36e-06 CCGTAATATT GTTCCAATAGTGTAGCGGCTATCACGTTG CCTTCACACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYYHSKTGGCBYAGTKGKTWAAGSSHNC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:197176-197831 2.9e-13 40_[+2]_31 chrXII:734593-734983 2.9e-13 63_[+2]_8 chrXIV:602043-602567 2.9e-13 56_[+2]_15 chrXVI:819134-819939 2.9e-13 42_[+2]_29 chrIX:183291-183683 2.9e-13 47_[-2]_24 chrXII:656830-657214 3.6e-11 5_[-2]_66 chrIV:1150658-1151182 4.3e-11 42_[-2]_29 chrXI:379450-379918 1.1e-10 45_[+2]_26 chrXIII:372203-372759 1.1e-10 58_[-2]_13 chrXIII:586487-586899 1.1e-10 37_[-2]_34 chrXI:307939-308477 1.1e-10 30_[-2]_41 chrVII:823354-823708 1.1e-10 [+2]_71 chrIX:325500-326095 4e-10 [+2]_71 chrVIII:132800-133364 5.2e-10 46_[-2]_25 chrXIII:258981-259454 5.2e-10 43_[-2]_28 chrIV:1305396-1305886 5.2e-10 38_[+2]_33 chrIII:227736-228231 8.7e-10 8_[+2]_63 chrXII:605151-605644 1.8e-09 56_[-2]_15 chrIII:127519-127891 2.3e-09 60_[+2]_11 chrXI:74428-74869 2.3e-09 25_[+2]_46 chrXVI:810581-810865 2.3e-09 2_[+2]_69 chrIV:1175579-1176153 5.1e-09 12_[+2]_59 chrX:390911-391011 5.1e-09 3_[-2]_68 chrX:422676-422776 5.1e-09 5_[+2]_66 chrX:531456-531556 6.4e-09 45_[+2]_26 chrXVI:860148-860682 6.4e-09 13_[+2]_58 chrXV:226442-226862 6.4e-09 50_[-2]_21 chrX:396517-396617 6.4e-09 38_[-2]_33 chrXV:281734-282577 6.4e-09 58_[+2]_13 chrVI:162035-162389 6.4e-09 65_[+2]_6 chrVII:115197-115749 7.9e-09 64_[+2]_7 chrIV:1201524-1201967 9.7e-09 54_[+2]_17 chrX:414744-414844 9.7e-09 6_[+2]_65 chrXIII:480376-480975 9.7e-09 39_[-2]_32 chrXVI:581801-582371 9.7e-09 25_[+2]_46 chrXIV:374696-375116 1.2e-08 12_[+2]_59 chrIV:1095119-1095715 1.2e-08 65_[-2]_6 chrVII:661542-661954 1.3e-08 50_[+2]_21 chrVII:1004026-1004420 1.3e-08 42_[+2]_29 chrX:424275-424375 1.8e-08 39_[-2]_32 chrXI:84013-84440 1.8e-08 31_[+2]_40 chrVII:205059-205943 2.9e-08 69_[+2]_2 chrXVI:622337-622870 4.5e-08 49_[-2]_22 chrVIII:134016-134639 5e-08 43_[+2]_28 chrV:249784-250866 5e-08 10_[+2]_61 chrIV:488442-489207 6.5e-08 67_[-2]_4 chrVI:210468-210929 7e-08 30_[-2]_41 chrX:542754-542854 7e-08 60_[-2]_11 chrXIII:837709-838191 7e-08 27_[+2]_44 chrVI:167213-167705 7e-08 27_[+2]_44 chrV:130828-131398 1.3e-07 61_[-2]_10 chrII:350584-351041 1.3e-07 64_[+2]_7 chrX:517672-517772 2.2e-07 34_[-2]_37 chrXVI:338471-339329 2.2e-07 40_[-2]_31 chrIII:149726-150204 2.2e-07 4_[+2]_67 chrX:374176-374276 2.5e-07 66_[-2]_5 chrXIII:747696-748139 2.5e-07 67_[-2]_4 chrXV:340134-340617 4.8e-07 17_[-2]_54 chrXV:110847-111195 6.7e-07 33_[-2]_38 chrV:78009-79458 1.4e-06 30_[+2]_41 chrIV:1075291-1075758 2.4e-06 41_[-2]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYYHSKTGGCBYAGTKGKTWAAGSSHNC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSYYHSKTGGCBYAGTKGKTWAAGSSHNC width=29 seqs=61 chrII:197176-197831 ( 41) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:734593-734983 ( 64) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:602043-602567 ( 57) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXVI:819134-819939 ( 43) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrIX:183291-183683 ( 48) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:656830-657214 ( 6) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrIV:1150658-1151182 ( 43) GTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrXI:379450-379918 ( 46) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXIII:372203-372759 ( 59) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXIII:586487-586899 ( 38) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXI:307939-308477 ( 31) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrVII:823354-823708 ( 1) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrIX:325500-326095 ( 1) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrVIII:132800-133364 ( 47) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXIII:258981-259454 ( 44) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrIV:1305396-1305886 ( 39) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrIII:227736-228231 ( 9) GGCACTATGGCCGAGTGGTTAAGGCGAGA 1 chrXII:605151-605644 ( 57) GCTCGTGTAGCTCAGTGGTTAGAGCTTCG 1 chrIII:127519-127891 ( 61) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXI:74428-74869 ( 26) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXVI:810581-810865 ( 3) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrIV:1175579-1176153 ( 13) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrX:390911-391011 ( 4) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrX:422676-422776 ( 6) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrX:531456-531556 ( 46) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXVI:860148-860682 ( 14) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:226442-226862 ( 51) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrX:396517-396617 ( 39) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:281734-282577 ( 59) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVI:162035-162389 ( 66) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVII:115197-115749 ( 65) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrIV:1201524-1201967 ( 55) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrX:414744-414844 ( 7) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrXIII:480376-480975 ( 40) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrXVI:581801-582371 ( 26) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrXIV:374696-375116 ( 13) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrIV:1095119-1095715 ( 66) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrVII:661542-661954 ( 51) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrVII:1004026-1004420 ( 43) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrX:424275-424375 ( 40) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXI:84013-84440 ( 32) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrVII:205059-205943 ( 70) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXVI:622337-622870 ( 50) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVIII:134016-134639 ( 44) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrV:249784-250866 ( 11) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrIV:488442-489207 ( 68) GGTCCAATGGTCCAGTGGTTCAAGACGTC 1 chrVI:210468-210929 ( 31) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrX:542754-542854 ( 61) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrXIII:837709-838191 ( 28) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrVI:167213-167705 ( 28) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrV:130828-131398 ( 62) GGTTTTATAGTGTAGTGGTTATCACTTTC 1 chrII:350584-351041 ( 65) GGTTTTATAGTGTAGTGGTTATCACTTTC 1 chrX:517672-517772 ( 35) AGCGCCGTGGCGCAGTGGAAGCGCGCAGG 1 chrXVI:338471-339329 ( 41) AGCGCCGTGGCGCAGTGGAAGCGCGCAGG 1 chrIII:149726-150204 ( 5) AGCGCCGTGGCGCAGTGGAAGCGCGCAGG 1 chrX:374176-374276 ( 67) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrXIII:747696-748139 ( 68) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrXV:340134-340617 ( 18) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrXV:110847-111195 ( 34) GGGCGGTTAGTGTAGTGGTTATCATCCCA 1 chrV:78009-79458 ( 31) CCATCGATGGTGTCGTCGGTAGAACCTTG 1 chrIV:1075291-1075758 ( 42) GTTCCAATAGTGTAGCGGCTATCACGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYYHSKTGGCBYAGTKGKTWAAGSSHNC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.7541 E= 2.7e-152 -266 -120 215 -325 -266 106 123 -144 -266 100 -6 34 -225 94 -52 51 -66 100 -52 -8 -66 118 18 -93 -66 -1257 123 21 -1257 -1257 -1257 168 7 -1257 183 -1257 -1257 -1257 241 -1257 -1257 187 -1257 0 -1257 128 56 -25 -125 94 -52 28 166 -352 -1257 -1257 -144 -1257 223 -1257 -1257 -252 -1257 163 -266 -6 138 -16 -1257 -1257 241 -1257 -266 -194 143 34 -25 -152 -194 100 88 -352 -120 7 71 -94 28 -93 71 -6 28 -192 -79 -72 169 -166 -424 148 123 -424 -1257 128 106 -108 34 6 -72 -8 -55 48 6 7 -66 148 6 -192 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYYHSKTGGCBYAGTKGKTWAAGSSHNC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 61 E= 2.7e-152 0.049180 0.081967 0.836066 0.032787 0.049180 0.393443 0.442623 0.114754 0.049180 0.377049 0.180328 0.393443 0.065574 0.360656 0.131148 0.442623 0.196721 0.377049 0.131148 0.295082 0.196721 0.426230 0.213115 0.163934 0.196721 0.000000 0.442623 0.360656 0.000000 0.000000 0.000000 1.000000 0.327869 0.000000 0.672131 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.688525 0.000000 0.311475 0.000000 0.459016 0.278689 0.262295 0.131148 0.360656 0.131148 0.377049 0.983607 0.016393 0.000000 0.000000 0.114754 0.000000 0.885246 0.000000 0.000000 0.032787 0.000000 0.967213 0.049180 0.180328 0.491803 0.278689 0.000000 0.000000 1.000000 0.000000 0.049180 0.049180 0.508197 0.393443 0.262295 0.065574 0.049180 0.622951 0.573770 0.016393 0.081967 0.327869 0.508197 0.098361 0.229508 0.163934 0.508197 0.180328 0.229508 0.081967 0.180328 0.114754 0.606557 0.098361 0.016393 0.524590 0.442623 0.016393 0.000000 0.459016 0.393443 0.147541 0.393443 0.196721 0.114754 0.295082 0.213115 0.262295 0.196721 0.327869 0.196721 0.524590 0.196721 0.081967 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYYHSKTGGCBYAGTKGKTWAAGSSHNC MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][TC][TC][CT][CG][GT]T[GA]G[CT][CGT][TC]AGT[GT]G[GT][TA][AT][AG][AG]G[CG][CG][AT][TCA]C -------------------------------------------------------------------------------- Time 671.98 secs. ******************************************************************************** ******************************************************************************** MOTIF GATKWGADATCTKTTGGRCTDTDBCCGVB MEME-3 width = 29 sites = 16 llr = 392 E-value = 2.4e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATKWGADATCTKTTGGRCTDTDBCCGVB MEME-3 Description -------------------------------------------------------------------------------- Simplified A :9::3394a::::::3:6::3:3::::3: pos.-specific C ::31::1:::a31:::3:a:1::487344 probability G a::318:3:3::6::774:33:43:3734 matrix T :1766::4:7:73aa::::83a333:::3 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * * ** * * Relative 1.4 ** ** * * ** * * * *** Entropy 1.2 ** ** * * **** * * *** (35.4 bits) 1.0 *** ** ************ * *** 0.7 **** ** ************ * *** * 0.5 ******* ************ ******** 0.2 ******************** ******** 0.0 ----------------------------- Multilevel GATTTGAAATCTGTTGGACTATGCCCGCC consensus CGAA T G CT ACG GT AGTGCAG sequence G G TT GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKWGADATCTKTTGGRCTDTDBCCGVB MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:689353-689896 + 20 1.10e-15 TAAGGCGACA GACTTGAAATCTGTTGGGCTCTGCCCGCG CTGGTTCAAA chrVIII:132800-133364 - 18 2.47e-14 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCG CAGGTTCGAG chrXIII:258981-259454 - 15 2.47e-14 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCG CAGGTTCGAG chrIV:437553-438142 + 4 2.47e-14 AAA GATTAGAAATCTTTTGGGCTTTGCCCGCG CAGGTTCGAG chrXII:167703-168246 - 44 2.47e-14 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCG CAGGTTCGAG chrIV:1305396-1305886 + 68 2.57e-13 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGGCCCGC GCAG chrXVI:210007-210456 + 55 1.06e-11 GTGAAAGCGT GATGTGATAGCCGTTACACTATATCGGAC AATAATTGGA chrII:347400-347937 + 15 1.35e-11 TAAGGCGGCA GACTTAAGATCTGTTGGACGGTTGTCCGC GCGAGTTCGA chrXIV:725932-726354 - 66 1.35e-11 GCGGCA GACTTAAGATCTGTTGGACGGTTGTCCGC GCGAGTTCGA chrX:424275-424375 - 10 1.35e-11 TAAGGCGGCA GACTTAAGATCTGTTGGACGGTTGTCCGC GCGAGTTCG chrXI:84013-84440 + 62 1.35e-11 TAAGGCGGCA GACTTAAGATCTGTTGGACGGTTGTCCGC GCGAGTTCGA chrII:644932-645434 - 33 2.23e-11 GTGAAAGCGT GATGTGATAGCCGTTACACTATATCGGAT AATAACTTAT chrX:115768-115868 + 17 2.23e-11 GTGAAAGCGT GATGTGATAGCCGTTACACTATATCGGAT TATAAACGGT chrXIII:290557-291117 - 13 2.23e-11 GTGAAAGCGT GATGTGATAGCCGTTACACTATATCGGAT TATATTTCAC chrIX:370259-370596 - 39 2.23e-11 GTGAAAGCGT GATGTGATAGCCGTTACACTATATCGGAT TATAATCTAT chrIII:227736-228231 + 57 1.98e-10 GGAATAAAAA GTTCGGCTATCTCTTGGGCTCTGCCCGCG CTGGTTCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKWGADATCTKTTGGRCTDTDBCCGVB MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:689353-689896 1.1e-15 19_[+3]_52 chrVIII:132800-133364 2.5e-14 17_[-3]_54 chrXIII:258981-259454 2.5e-14 14_[-3]_57 chrIV:437553-438142 2.5e-14 3_[+3]_68 chrXII:167703-168246 2.5e-14 43_[-3]_28 chrIV:1305396-1305886 2.6e-13 67_[+3]_4 chrXVI:210007-210456 1.1e-11 54_[+3]_17 chrII:347400-347937 1.3e-11 14_[+3]_57 chrXIV:725932-726354 1.3e-11 65_[-3]_6 chrX:424275-424375 1.3e-11 9_[-3]_62 chrXI:84013-84440 1.3e-11 61_[+3]_10 chrII:644932-645434 2.2e-11 32_[-3]_39 chrX:115768-115868 2.2e-11 16_[+3]_55 chrXIII:290557-291117 2.2e-11 12_[-3]_59 chrIX:370259-370596 2.2e-11 38_[-3]_33 chrIII:227736-228231 2e-10 56_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKWGADATCTKTTGGRCTDTDBCCGVB MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATKWGADATCTKTTGGRCTDTDBCCGVB width=29 seqs=16 chrXVI:689353-689896 ( 20) GACTTGAAATCTGTTGGGCTCTGCCCGCG 1 chrVIII:132800-133364 ( 18) GATTAGAAATCTTTTGGGCTTTGCCCGCG 1 chrXIII:258981-259454 ( 15) GATTAGAAATCTTTTGGGCTTTGCCCGCG 1 chrIV:437553-438142 ( 4) GATTAGAAATCTTTTGGGCTTTGCCCGCG 1 chrXII:167703-168246 ( 44) GATTAGAAATCTTTTGGGCTTTGCCCGCG 1 chrIV:1305396-1305886 ( 68) GATTAGAAATCTTTTGGGCTTTGGCCCGC 1 chrXVI:210007-210456 ( 55) GATGTGATAGCCGTTACACTATATCGGAC 1 chrII:347400-347937 ( 15) GACTTAAGATCTGTTGGACGGTTGTCCGC 1 chrXIV:725932-726354 ( 66) GACTTAAGATCTGTTGGACGGTTGTCCGC 1 chrX:424275-424375 ( 10) GACTTAAGATCTGTTGGACGGTTGTCCGC 1 chrXI:84013-84440 ( 62) GACTTAAGATCTGTTGGACGGTTGTCCGC 1 chrII:644932-645434 ( 33) GATGTGATAGCCGTTACACTATATCGGAT 1 chrX:115768-115868 ( 17) GATGTGATAGCCGTTACACTATATCGGAT 1 chrXIII:290557-291117 ( 13) GATGTGATAGCCGTTACACTATATCGGAT 1 chrIX:370259-370596 ( 39) GATGTGATAGCCGTTACACTATATCGGAT 1 chrIII:227736-228231 ( 57) GTTCGGCTATCTCTTGGGCTCTGCCCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKWGADATCTKTTGGRCTDTDBCCGVB MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.3982 E= 2.4e-048 -1064 -1064 241 -1064 159 -1064 -1064 -231 -1064 73 -1064 114 -1064 -159 73 100 1 -1064 -159 100 -32 -1064 199 -1064 159 -159 -1064 -1064 27 -1064 41 27 168 -1064 -1064 -1064 -1064 -1064 73 114 -1064 241 -1064 -1064 -1064 73 -1064 114 -1064 -159 173 1 -1064 -1064 -1064 168 -1064 -1064 -1064 168 1 -1064 187 -1064 -1064 73 187 -1064 85 -1064 121 -1064 -1064 241 -1064 -1064 -1064 -1064 41 127 1 -59 41 1 -1064 -1064 -1064 168 1 -1064 121 -32 -1064 99 73 1 -1064 199 -1064 -32 -1064 187 73 -1064 -1064 73 187 -1064 1 99 73 -1064 -1064 99 99 -32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKWGADATCTKTTGGRCTDTDBCCGVB MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 16 E= 2.4e-048 0.000000 0.000000 1.000000 0.000000 0.937500 0.000000 0.000000 0.062500 0.000000 0.312500 0.000000 0.687500 0.000000 0.062500 0.312500 0.625000 0.312500 0.000000 0.062500 0.625000 0.250000 0.000000 0.750000 0.000000 0.937500 0.062500 0.000000 0.000000 0.375000 0.000000 0.250000 0.375000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.312500 0.687500 0.000000 1.000000 0.000000 0.000000 0.000000 0.312500 0.000000 0.687500 0.000000 0.062500 0.625000 0.312500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.312500 0.000000 0.687500 0.000000 0.000000 0.312500 0.687500 0.000000 0.562500 0.000000 0.437500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.312500 0.125000 0.250000 0.312500 0.000000 0.000000 0.000000 1.000000 0.312500 0.000000 0.437500 0.250000 0.000000 0.375000 0.312500 0.312500 0.000000 0.750000 0.000000 0.250000 0.000000 0.687500 0.312500 0.000000 0.000000 0.312500 0.687500 0.000000 0.312500 0.375000 0.312500 0.000000 0.000000 0.375000 0.375000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATKWGADATCTKTTGGRCTDTDBCCGVB MEME-3 regular expression -------------------------------------------------------------------------------- GA[TC][TG][TA][GA]A[ATG]A[TG]C[TC][GT]TT[GA][GC][AG]C[TG][ATG]T[GAT][CGT][CT][CG][GC][CAG][CGT] -------------------------------------------------------------------------------- Time 982.58 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:332301-333089 2.32e-01 100 chrVIII:126462-127869 2.38e-01 100 chrXIV:631491-632008 1.94e-01 100 chrVII:147993-149493 4.88e-01 100 chrXI:84013-84440 2.00e-12 31_[+2(1.78e-08)]_1_[+3(1.35e-11)]_\ 10 chrII:9462-9976 8.61e-01 100 chrIV:1351883-1353076 3.72e-07 28_[+1(3.36e-10)]_43 chrXVI:810581-810865 1.92e-12 2_[+2(2.32e-09)]_24_[-1(1.16e-10)]_\ 16 chrXIII:504660-505268 5.13e-01 100 chrVII:427250-427903 5.01e-02 100 chrVII:345835-346621 2.60e-01 100 chrXI:163357-164485 9.86e-01 100 chrIV:579070-581351 2.59e-01 100 chrIII:150870-151579 7.04e-01 100 chrXVI:377782-378478 4.22e-01 100 chrIV:1095119-1095715 4.08e-05 65_[-2(1.20e-08)]_6 chrXI:333751-334980 3.33e-01 100 chrIX:315782-318240 9.52e-01 100 chrXIV:442852-444351 2.25e-01 100 chrIV:945779-946631 5.71e-01 100 chrXII:242169-243492 9.11e-01 100 chrII:226981-227352 4.87e-07 19_[-1(1.16e-10)]_52 chrI:24974-25463 9.98e-01 100 chrXI:303953-304110 7.46e-02 100 chrXVI:55848-56350 9.59e-01 100 chrVII:398617-400151 2.74e-01 100 chrXV:594310-594654 6.76e-01 100 chrXI:519304-521041 6.76e-01 100 chrVII:806027-807784 2.76e-01 100 chrXV:677673-679140 4.85e-01 100 chrXII:1028184-1028542 9.38e-01 100 chrV:152149-152674 1.46e-01 100 chrXVI:559909-560453 5.86e-04 58_[+1(1.59e-07)]_13 chrII:612025-614011 3.07e-01 100 chrIV:913989-914836 5.98e-02 100 chrXV:504900-505476 7.60e-01 100 chrIV:1012775-1013961 4.64e-02 100 chrXIII:747696-748139 2.26e-09 16_[+1(2.81e-09)]_22_[-2(2.52e-07)]_\ 4 chrVII:185362-185923 7.94e-01 100 chrXII:656830-657214 6.25e-07 5_[-2(3.65e-11)]_66 chrVIII:149010-149231 4.74e-01 100 chrX:424275-424375 2.40e-12 9_[-3(1.35e-11)]_1_[-2(1.78e-08)]_\ 32 chrVII:363626-364448 9.72e-01 100 chrVIII:410984-411781 2.11e-01 100 chrXII:793743-797796 2.61e-01 100 chrXIII:195939-196305 7.28e-08 52_[+1(2.15e-07)]_19 chrXIV:96000-96461 9.48e-07 52_[+1(1.75e-10)]_19 chrXIV:569560-570044 9.18e-02 100 chrVII:422885-423552 3.99e-05 16_[-1(3.88e-09)]_55 chrXVI:744064-744654 5.04e-07 25_[-1(1.80e-09)]_46 chrXII:975804-976102 2.09e-06 71_[+1(1.01e-10)] chrIX:183291-183683 7.56e-10 47_[-2(2.88e-13)]_24 chrXV:464285-464768 1.36e-05 54_[-1(1.58e-08)]_17 chrXIII:168687-169014 5.06e-05 62_[-1(5.58e-08)]_9 chrVII:878595-879104 6.71e-01 100 chrXI:457611-459134 8.63e-01 100 chrX:378020-378120 8.07e-01 100 chrII:604126-607137 9.31e-01 100 chrXVI:210007-210456 2.14e-15 2_[+1(1.33e-10)]_23_[+3(1.06e-11)]_\ 17 chrVII:23896-25996 3.23e-01 100 chrXI:282820-284489 8.09e-01 100 chrXII:783885-784509 3.39e-01 100 chrXI:551555-552705 2.17e-01 100 chrX:702308-702408 8.12e-02 100 chrV:396164-396548 4.88e-01 100 chrIV:1243135-1243327 9.65e-01 100 chrVII:328382-329115 9.18e-01 100 chrXIII:296820-298873 4.50e-01 100 chrXIV:24071-27820 2.14e-01 100 chrXII:1017590-1019404 5.91e-01 100 chrXII:426914-427588 4.43e-01 100 chrVIII:103874-105479 6.00e-01 100 chrXI:108555-109046 6.40e-01 100 chrXI:490763-491345 6.52e-06 15_[-1(5.54e-10)]_56 chrXII:930579-931887 5.05e-03 55_[-1(1.85e-06)]_16 chrXVI:280577-281853 4.19e-02 46_[+2(8.78e-05)]_25 chrV:438334-438998 9.52e-01 100 chrXII:366052-366935 2.40e-01 100 chrIV:1359429-1361371 5.86e-01 100 chrXII:167703-168246 9.18e-18 11_[+1(1.16e-10)]_3_[-3(2.47e-14)]_\ 28 chrVII:364887-366709 5.49e-01 100 chrXVI:435528-436199 3.14e-06 71_[+1(1.53e-10)] chrVII:110348-110786 9.42e-01 100 chrXIV:575088-576155 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************