******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HSF1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71771-73280 1.0000 100 chrI:81913-82339 1.0000 100 chrI:138923-139792 1.0000 100 chrI:141057-143701 1.0000 100 chrI:166173-166599 1.0000 100 chrII:9450-10144 1.0000 100 chrII:36243-36618 1.0000 100 chrII:44772-45391 1.0000 100 chrII:60830-61200 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100 chrXVI:350220-353482 1.0000 100 chrXVI:378657-378992 1.0000 100 chrXVI:404589-405956 1.0000 100 chrXVI:406189-407756 1.0000 100 chrXVI:431959-432313 1.0000 100 chrXVI:432544-434370 1.0000 100 chrXVI:435636-436187 1.0000 100 chrXVI:519930-520552 1.0000 100 chrXVI:559960-560471 1.0000 100 chrXVI:572006-572526 1.0000 100 chrXVI:581844-582274 1.0000 100 chrXVI:622302-622862 1.0000 100 chrXVI:645163-645715 1.0000 100 chrXVI:679021-679371 1.0000 100 chrXVI:689379-689872 1.0000 100 chrXVI:699678-700704 1.0000 100 chrXVI:731588-732301 1.0000 100 chrXVI:744051-744520 1.0000 100 chrXVI:769013-769486 1.0000 100 chrXVI:775644-776049 1.0000 100 chrXVI:794469-796204 1.0000 100 chrXVI:810581-811405 1.0000 100 chrXVI:819344-820783 1.0000 100 chrXVI:842802-843875 1.0000 100 chrXVI:856819-857161 1.0000 100 chrXVI:860122-860687 1.0000 100 chrXVI:880190-880552 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HSF1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HSF1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HSF1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 544 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 54400 N= 544 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.297 C 0.203 G 0.203 T 0.297 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HSF1/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF AABCDKRAGGTCCBGGGTTCGAYYCCSV MEME-1 width = 28 sites = 75 llr = 1510 E-value = 1.3e-320 ******************************************************************************** -------------------------------------------------------------------------------- Motif AABCDKRAGGTCCBGGGTTCGAYYCCSV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 67::3147232:3::2::::3a1::1:3 pos.-specific C 31371:111:186331:::a::35a664 probability G :123355267::2467a:::7:1::133 matrix T 114:331:::72:3:1:aa:::55:2:: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.6 * **** * * Relative 1.4 * * ****** * Entropy 1.2 * * * * ****** * * (29.0 bits) 0.9 * * * * ****** ** * 0.7 * *** ** ******** ***** 0.5 **** ***************** ***** 0.2 **** *********************** 0.0 ---------------------------- Multilevel AATCGGGAGGTCCGGGGTTCGATTCCCC consensus C CGTTAG AATACCA A CC TGG sequence G A T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AABCDKRAGGTCCBGGGTTCGAYYCCSV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrXVI:210001-210454 - 24 1.40e-12 ATCACGCTTT CACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXIII:290581-291130 + 31 1.40e-12 ATCACGCTTT CACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXI:140809-141343 - 1 1.40e-12 ATCACGCTTT CACCGTGGAGACCGGGGTTCGACTCCCC chrVII:401437-401618 - 59 1.40e-12 ATCACGCTTT CACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:486995-487648 - 69 1.40e-12 CTTT CACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:176842-177440 + 43 1.40e-12 ATCACGCTTT CACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIV:1016950-1017491 - 46 1.40e-12 ATCACGTTCT CACCGTGGAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrII:644956-645433 + 58 1.40e-12 ATCACGCTTT CACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXIII:480405-480918 - 19 4.22e-12 TATGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrX:414783-415274 + 24 4.22e-12 TATGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrV:435583-435935 - 52 4.22e-12 TATGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrIV:1201552-1202012 + 54 4.22e-12 TATGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrIII:150990-151566 - 65 4.22e-12 TGACTCTT AATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrXII:1051977-1052208 - 38 6.59e-12 CCGTGCTAAT AACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:550980-551621 - 44 6.59e-12 CCGTGCTAAT AACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAA chrV:443099-443340 - 42 6.59e-12 CCGTGCTAAT AACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrII:197305-197853 + 2 6.59e-12 T AACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrIII:123341-123802 - 65 1.16e-11 CGCTTAGG GTGCGGGAGGTCCCGGGTTCGAGTCCCG GCTCGCCCCA chrXIII:747680-748140 - 41 2.62e-11 TCTGACTTCT AATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGT chrXIII:131626-132112 - 15 2.62e-11 TCTGACTTCT AATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrX:374224-374803 - 52 2.62e-11 TCTGACTTCT AATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrV:311725-312297 - 71 4.93e-11 GC AAGGAAGAGGTCATCGGTTCGATTCCGG TTGCGTCCAA chrXVI:860122-860687 + 59 8.00e-11 CCAACGTTGC CATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrX:396568-396950 - 26 8.00e-11 CCAACGTTGC CATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAT chrVI:180695-181256 - 58 8.00e-11 CCAACGTTGC CATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrIV:83319-83817 + 64 8.00e-11 CCAACGTTGC CATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCA chrII:36243-36618 + 72 1.01e-10 TCGGTCAAGT CATCTGGAGGTCCTGTGTTCGATCCACA G chrXIII:586423-586898 - 35 1.99e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:420344-420859 - 46 1.99e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:372217-372767 - 12 1.99e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrX:378128-378742 + 12 1.99e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrVIII:475488-475908 - 67 1.99e-10 CTTCAC ACGGCAAAGGTCCCGAGTTCGATCCTCG GTTGGAACAT chrVII:823349-823721 + 34 1.99e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrVII:412105-412581 - 10 1.99e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCA chrV:469254-469733 + 51 1.99e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrV:438498-438967 + 55 1.99e-10 TCTGCTTAAC ACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrIV:1075299-1075752 - 6 1.99e-10 TTGCCTTCAC ACGGCAAAGGTCCCGAGTTCGATCCTCG GTTGG chrXIII:837729-838209 + 61 2.22e-10 ACCACTACGA AATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrXIII:168681-169003 + 55 2.22e-10 ATCACTACGA AATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrX:542729-543259 - 21 2.22e-10 ATCACTACGA AATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrX:354168-354520 + 2 2.22e-10 A AATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrVI:210414-210939 - 2 2.22e-10 ACCACTACGA AATCTTGAGATCGGGCGTTCGACTCGCC C chrXV:464283-464704 + 72 2.47e-10 AAGACAAAGC ATGCGAGAGGCCCTGGGTTCAATTCCCA G chrXIV:546570-547705 + 73 2.47e-10 AAGACAAAGC ATGCGAGAGGCCCTGGGTTCAATTCCCA chrXIII:195951-196301 - 1 2.47e-10 AAGACAAAGC ATGCGAGAGGCCCTGGGTTCAATTCCCA chrVIII:388689-389212 - 2 2.47e-10 AAGACAAAGC ATGCGAGAGGCCCTGGGTTCAATTCCCA G chrXIII:572664-573173 - 24 3.75e-10 TCAGTCTCAT AATCTGAAGGTCGAGAGTTCGAACCTCC CCTGGAGCAC chrX:422716-423314 + 8 3.75e-10 GTCTCAT AATCTGAAGGTCGAGAGTTCGAACCTCC CCTGGAGCAC chrXVI:769013-769486 - 17 4.16e-10 TAAGCAAGGA TACCGAAATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXI:578742-579340 + 33 4.16e-10 TAAGCAAGGA TACCGAAATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrII:326473-327150 - 40 4.16e-10 TCGCCTTTAC ACGGCGAAGATCCCGAGTTCGAACCTCG GTTGGATCAA chrXVI:622302-622862 - 17 6.20e-10 TCGGTCAAGT TATCTGGAGGTCCTGTGTTCGATCCACA GAATTCGCAT chrXVI:559960-560471 - 42 6.20e-10 TCGGTCAAGT TATCTGGAGGTCCTGTGTTCGATCCACA GAATTCGCAT chrIV:1095179-1095663 - 8 6.20e-10 TTGGTCAAGA TATCTGGAGGTCCTGTGTTCGATCCACA GAGTTCG chrXIV:104601-105131 + 25 6.83e-10 CCACACTAGT AATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIX:325547-326052 + 35 6.83e-10 CCACACTAGT AATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAA chrIX:174848-175356 + 15 6.83e-10 CCACACTAGT AATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAA chrVIII:133943-134793 + 38 7.53e-10 TTTCGGTTTT GATCCGGACAACCCCGGTTCGAATCCGG GTAGGACCTT chrIII:168112-168553 - 28 7.53e-10 TTTCGGTTTT GATCCGGACAACCCCGGTTCGAATCCGG GTAGGACCTT chrIV:884286-884618 + 55 1.10e-09 CTTTAAAAGC AACGCGACCGTCGTGGGTTCAAACCCCA CCTCGAGCAC chrXIV:96012-96460 - 64 1.58e-09 CCACCCTTC CAAGGTGGGGACACGGGTTCGATTCTCG TACCGCTCAA chrXIV:102577-102994 + 18 2.64e-09 TGCGACTGTT AATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVII:730954-731402 + 46 2.64e-09 TGCGACTGTT AATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVI:137258-137787 - 23 2.64e-09 TGCGACTGTT AATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXIII:463430-463831 + 9 6.85e-09 GCGCTTGT CGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXII:426887-427483 + 32 6.85e-09 GGGCGCTTGT CGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrX:204521-204984 + 68 6.85e-09 GGGCGCTTGT CGCGTGCCAGATCGGGGTTCAATTCCCC GTCGC chrIX:336085-336635 - 48 6.85e-09 GGGCGCTTGT CGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrIV:568711-569250 + 69 6.85e-09 GGGCGCTTGT CGCGTGCCAGATCGGGGTTCAATTCCCC GTCG chrII:405678-406331 + 41 6.85e-09 GGGCGCTTGT CGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXII:374201-374670 + 6 1.14e-08 CTACG AACCAGAAGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrIV:619735-620220 - 51 1.14e-08 TCTGGCTACG AACCAGAAGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrVII:287161-287652 - 3 2.22e-08 ATAAGATTGC AATCGAAGGGTTGCAGGTTCAATTCCTG TC chrXVI:435636-436187 - 41 5.15e-08 GCAGATTGCA AATCTGTTGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrIII:149747-150147 + 58 8.83e-08 CAGGGCTCAT AACCCTGATGTCCTCGGATCGAAACCGA GCGGCGCTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AABCDKRAGGTCCBGGGTTCGAYYCCSV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:210001-210454 1.4e-12 23_[-1]_49 chrXIII:290581-291130 1.4e-12 30_[+1]_42 chrXI:140809-141343 1.4e-12 [-1]_72 chrVII:401437-401618 1.4e-12 58_[-1]_14 chrV:486995-487648 1.4e-12 68_[-1]_4 chrV:176842-177440 1.4e-12 42_[+1]_30 chrIV:1016950-1017491 1.4e-12 45_[-1]_27 chrII:644956-645433 1.4e-12 57_[+1]_15 chrXIII:480405-480918 4.2e-12 18_[-1]_54 chrX:414783-415274 4.2e-12 23_[+1]_49 chrV:435583-435935 4.2e-12 51_[-1]_21 chrIV:1201552-1202012 4.2e-12 53_[+1]_19 chrIII:150990-151566 4.2e-12 64_[-1]_8 chrXII:1051977-1052208 6.6e-12 37_[-1]_35 chrV:550980-551621 6.6e-12 43_[-1]_29 chrV:443099-443340 6.6e-12 41_[-1]_31 chrII:197305-197853 6.6e-12 1_[+1]_71 chrIII:123341-123802 1.2e-11 64_[-1]_8 chrXIII:747680-748140 2.6e-11 40_[-1]_32 chrXIII:131626-132112 2.6e-11 14_[-1]_58 chrX:374224-374803 2.6e-11 51_[-1]_21 chrV:311725-312297 4.9e-11 70_[-1]_2 chrXVI:860122-860687 8e-11 58_[+1]_14 chrX:396568-396950 8e-11 25_[-1]_47 chrVI:180695-181256 8e-11 57_[-1]_15 chrIV:83319-83817 8e-11 63_[+1]_9 chrII:36243-36618 1e-10 71_[+1]_1 chrXIII:586423-586898 2e-10 34_[-1]_38 chrXIII:420344-420859 2e-10 45_[-1]_27 chrXIII:372217-372767 2e-10 11_[-1]_61 chrX:378128-378742 2e-10 11_[+1]_61 chrVIII:475488-475908 2e-10 66_[-1]_6 chrVII:823349-823721 2e-10 33_[+1]_39 chrVII:412105-412581 2e-10 9_[-1]_63 chrV:469254-469733 2e-10 50_[+1]_22 chrV:438498-438967 2e-10 54_[+1]_18 chrIV:1075299-1075752 2e-10 5_[-1]_67 chrXIII:837729-838209 2.2e-10 60_[+1]_12 chrXIII:168681-169003 2.2e-10 54_[+1]_18 chrX:542729-543259 2.2e-10 20_[-1]_52 chrX:354168-354520 2.2e-10 1_[+1]_71 chrVI:210414-210939 2.2e-10 1_[-1]_71 chrXV:464283-464704 2.5e-10 71_[+1]_1 chrXIV:546570-547705 2.5e-10 72_[+1] chrXIII:195951-196301 2.5e-10 [-1]_72 chrVIII:388689-389212 2.5e-10 1_[-1]_71 chrXIII:572664-573173 3.8e-10 23_[-1]_49 chrX:422716-423314 3.8e-10 7_[+1]_65 chrXVI:769013-769486 4.2e-10 16_[-1]_56 chrXI:578742-579340 4.2e-10 32_[+1]_40 chrII:326473-327150 4.2e-10 39_[-1]_33 chrXVI:622302-622862 6.2e-10 16_[-1]_56 chrXVI:559960-560471 6.2e-10 41_[-1]_31 chrIV:1095179-1095663 6.2e-10 7_[-1]_65 chrXIV:104601-105131 6.8e-10 24_[+1]_48 chrIX:325547-326052 6.8e-10 34_[+1]_38 chrIX:174848-175356 6.8e-10 14_[+1]_58 chrVIII:133943-134793 7.5e-10 37_[+1]_35 chrIII:168112-168553 7.5e-10 27_[-1]_45 chrIV:884286-884618 1.1e-09 54_[+1]_18 chrXIV:96012-96460 1.6e-09 63_[-1]_9 chrXIV:102577-102994 2.6e-09 17_[+1]_55 chrVII:730954-731402 2.6e-09 45_[+1]_27 chrVI:137258-137787 2.6e-09 22_[-1]_50 chrXIII:463430-463831 6.8e-09 8_[+1]_64 chrXII:426887-427483 6.8e-09 31_[+1]_41 chrX:204521-204984 6.8e-09 67_[+1]_5 chrIX:336085-336635 6.8e-09 47_[-1]_25 chrIV:568711-569250 6.8e-09 68_[+1]_4 chrII:405678-406331 6.8e-09 40_[+1]_32 chrXII:374201-374670 1.1e-08 5_[+1]_67 chrIV:619735-620220 1.1e-08 50_[-1]_22 chrVII:287161-287652 2.2e-08 2_[-1]_70 chrXVI:435636-436187 5.1e-08 40_[-1]_32 chrIII:149747-150147 8.8e-08 57_[+1]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AABCDKRAGGTCCBGGGTTCGAYYCCSV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AABCDKRAGGTCCBGGGTTCGAYYCCSV width=28 seqs=75 chrXVI:210001-210454 ( 24) CACCGTGGAGACCGGGGTTCGACTCCCC 1 chrXIII:290581-291130 ( 31) CACCGTGGAGACCGGGGTTCGACTCCCC 1 chrXI:140809-141343 ( 1) CACCGTGGAGACCGGGGTTCGACTCCCC 1 chrVII:401437-401618 ( 59) CACCGTGGAGACCGGGGTTCGACTCCCC 1 chrV:486995-487648 ( 69) CACCGTGGAGACCGGGGTTCGACTCCCC 1 chrV:176842-177440 ( 43) CACCGTGGAGACCGGGGTTCGACTCCCC 1 chrIV:1016950-1017491 ( 46) CACCGTGGAGACCGGGGTTCGACTCCCC 1 chrII:644956-645433 ( 58) CACCGTGGAGACCGGGGTTCGACTCCCC 1 chrXIII:480405-480918 ( 19) AATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrX:414783-415274 ( 24) AATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrV:435583-435935 ( 52) AATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrIV:1201552-1202012 ( 54) AATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrIII:150990-151566 ( 65) AATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrXII:1051977-1052208 ( 38) AACGCGGGGATCAGCGGTTCGATCCCGC 1 chrV:550980-551621 ( 44) AACGCGGGGATCAGCGGTTCGATCCCGC 1 chrV:443099-443340 ( 42) AACGCGGGGATCAGCGGTTCGATCCCGC 1 chrII:197305-197853 ( 2) AACGCGGGGATCAGCGGTTCGATCCCGC 1 chrIII:123341-123802 ( 65) GTGCGGGAGGTCCCGGGTTCGAGTCCCG 1 chrXIII:747680-748140 ( 41) AATCAGAAGATTATGGGTTCGACCCCCA 1 chrXIII:131626-132112 ( 15) AATCAGAAGATTATGGGTTCGACCCCCA 1 chrX:374224-374803 ( 52) AATCAGAAGATTATGGGTTCGACCCCCA 1 chrV:311725-312297 ( 71) AAGGAAGAGGTCATCGGTTCGATTCCGG 1 chrXVI:860122-860687 ( 59) CATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrX:396568-396950 ( 26) CATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrVI:180695-181256 ( 58) CATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrIV:83319-83817 ( 64) CATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrII:36243-36618 ( 72) CATCTGGAGGTCCTGTGTTCGATCCACA 1 chrXIII:586423-586898 ( 35) ACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrXIII:420344-420859 ( 46) ACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrXIII:372217-372767 ( 12) ACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrX:378128-378742 ( 12) ACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrVIII:475488-475908 ( 67) ACGGCAAAGGTCCCGAGTTCGATCCTCG 1 chrVII:823349-823721 ( 34) ACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrVII:412105-412581 ( 10) ACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrV:469254-469733 ( 51) ACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrV:438498-438967 ( 55) ACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrIV:1075299-1075752 ( 6) ACGGCAAAGGTCCCGAGTTCGATCCTCG 1 chrXIII:837729-838209 ( 61) AATCTTGAGATCGGGCGTTCGACTCGCC 1 chrXIII:168681-169003 ( 55) AATCTTGAGATCGGGCGTTCGACTCGCC 1 chrX:542729-543259 ( 21) AATCTTGAGATCGGGCGTTCGACTCGCC 1 chrX:354168-354520 ( 2) AATCTTGAGATCGGGCGTTCGACTCGCC 1 chrVI:210414-210939 ( 2) AATCTTGAGATCGGGCGTTCGACTCGCC 1 chrXV:464283-464704 ( 72) ATGCGAGAGGCCCTGGGTTCAATTCCCA 1 chrXIV:546570-547705 ( 73) ATGCGAGAGGCCCTGGGTTCAATTCCCA 1 chrXIII:195951-196301 ( 1) ATGCGAGAGGCCCTGGGTTCAATTCCCA 1 chrVIII:388689-389212 ( 2) ATGCGAGAGGCCCTGGGTTCAATTCCCA 1 chrXIII:572664-573173 ( 24) AATCTGAAGGTCGAGAGTTCGAACCTCC 1 chrX:422716-423314 ( 8) AATCTGAAGGTCGAGAGTTCGAACCTCC 1 chrXVI:769013-769486 ( 17) TACCGAAATGTCAGGGGTTCGAGCCCCC 1 chrXI:578742-579340 ( 33) TACCGAAATGTCAGGGGTTCGAGCCCCC 1 chrII:326473-327150 ( 40) ACGGCGAAGATCCCGAGTTCGAACCTCG 1 chrXVI:622302-622862 ( 17) TATCTGGAGGTCCTGTGTTCGATCCACA 1 chrXVI:559960-560471 ( 42) TATCTGGAGGTCCTGTGTTCGATCCACA 1 chrIV:1095179-1095663 ( 8) TATCTGGAGGTCCTGTGTTCGATCCACA 1 chrXIV:104601-105131 ( 25) AATGTGGAGATCATCGGTTCAAATCCGA 1 chrIX:325547-326052 ( 35) AATGTGGAGATCATCGGTTCAAATCCGA 1 chrIX:174848-175356 ( 15) AATGTGGAGATCATCGGTTCAAATCCGA 1 chrVIII:133943-134793 ( 38) GATCCGGACAACCCCGGTTCGAATCCGG 1 chrIII:168112-168553 ( 28) GATCCGGACAACCCCGGTTCGAATCCGG 1 chrIV:884286-884618 ( 55) AACGCGACCGTCGTGGGTTCAAACCCCA 1 chrXIV:96012-96460 ( 64) CAAGGTGGGGACACGGGTTCGATTCTCG 1 chrXIV:102577-102994 ( 18) AATCGCAAGATCGTGAGTTCAACCCTCA 1 chrVII:730954-731402 ( 46) AATCGCAAGATCGTGAGTTCAACCCTCA 1 chrVI:137258-137787 ( 23) AATCGCAAGATCGTGAGTTCAACCCTCA 1 chrXIII:463430-463831 ( 9) CGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrXII:426887-427483 ( 32) CGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrX:204521-204984 ( 68) CGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrIX:336085-336635 ( 48) CGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrIV:568711-569250 ( 69) CGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrII:405678-406331 ( 41) CGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrXII:374201-374670 ( 6) AACCAGAAGATTCCAGGTTCAAGTCCTG 1 chrIV:619735-620220 ( 51) AACCAGAAGATTCCAGGTTCAAGTCCTG 1 chrVII:287161-287652 ( 3) AATCGAAGGGTTGCAGGTTCAATTCCTG 1 chrXVI:435636-436187 ( 41) AATCTGTTGGTCCTTAGTTCGATCCTGA 1 chrIII:149747-150147 ( 58) AACCCTGATGTCCTCGGATCGAAACCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AABCDKRAGGTCCBGGGTTCGAYYCCSV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 39712 bayes= 10.857 E= 1.3e-320 104 44 -229 -219 122 -42 -129 -219 -451 71 21 53 -1287 193 37 -1287 -26 -42 71 -12 -119 -229 137 7 40 -129 121 -219 110 -107 29 -451 -70 -42 168 -292 1 -1287 182 -1287 -42 -88 -1287 113 -1287 198 -1287 -42 -26 158 -29 -1287 -351 58 103 -12 -292 65 171 -451 -42 -156 174 -251 -1287 -1287 235 -1287 -451 -1287 -1287 170 -1287 -1287 -1287 172 -1287 235 -1287 -1287 -19 -1287 190 -1287 172 -1287 -1287 -1287 -119 37 -56 66 -451 129 -1287 74 -1287 235 -1287 -1287 -251 171 -156 -34 -1287 171 71 -292 -19 112 65 -1287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AABCDKRAGGTCCBGGGTTCGAYYCCSV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 75 E= 1.3e-320 0.626667 0.266667 0.040000 0.066667 0.706667 0.146667 0.080000 0.066667 0.013333 0.320000 0.226667 0.440000 0.000000 0.746667 0.253333 0.000000 0.253333 0.146667 0.320000 0.280000 0.133333 0.040000 0.506667 0.320000 0.400000 0.080000 0.453333 0.066667 0.653333 0.093333 0.240000 0.013333 0.186667 0.146667 0.626667 0.040000 0.306667 0.000000 0.693333 0.000000 0.226667 0.106667 0.000000 0.666667 0.000000 0.773333 0.000000 0.226667 0.253333 0.586667 0.160000 0.000000 0.026667 0.293333 0.400000 0.280000 0.040000 0.306667 0.640000 0.013333 0.226667 0.066667 0.653333 0.053333 0.000000 0.000000 1.000000 0.000000 0.013333 0.000000 0.000000 0.986667 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.266667 0.000000 0.733333 0.000000 1.000000 0.000000 0.000000 0.000000 0.133333 0.253333 0.133333 0.480000 0.013333 0.480000 0.000000 0.506667 0.000000 1.000000 0.000000 0.000000 0.053333 0.640000 0.066667 0.240000 0.000000 0.640000 0.320000 0.040000 0.266667 0.426667 0.306667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AABCDKRAGGTCCBGGGTTCGAYYCCSV MEME-1 regular expression -------------------------------------------------------------------------------- [AC]A[TCG][CG][GTA][GT][GA][AG]G[GA][TA][CT][CA][GCT][GC][GA]GTTC[GA]A[TC][TC]C[CT][CG][CGA] -------------------------------------------------------------------------------- Time 287.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CGNNSSCTYWAMCCACTARRCYAHVNVVSC MEME-2 width = 30 sites = 75 llr = 1244 E-value = 9.6e-205 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGNNSSCTYWAMCCACTARRCYAHVNVVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 113322112455:3a::534::a4334311 pos.-specific C 522244624:15a5:8:22:a6:4322359 probability G 25324412::1::2:::256::::333441 matrix T 2223::26562::::2a1:::4:2121:1: bits 2.4 * * 2.1 * * 1.9 * * 1.6 * *** * * * Relative 1.4 * *** * * * Entropy 1.2 * *** **** * (23.9 bits) 0.9 ** *** **** * 0.7 ** ****** ***** ** 0.5 ** *** * ****** ****** *** 0.2 ** ********************* **** 0.0 ------------------------------ Multilevel CGAACGCTTTAACCACTAGGCCAAGAAGCC consensus TGTGCT CATC A GAA T CAGGAG sequence CC C TCCCC G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGNNSSCTYWAMCCACTARRCYAHVNVVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:880190-880552 + 19 1.44e-12 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC ATTATATTGT chrXIV:602062-602561 - 51 1.44e-12 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC ATTGTTATCT chrXII:734592-734971 - 71 1.44e-12 . CGGTGCCTTAACCAACTGGGCCAAGAGACC AAACTTTGTT chrXIII:321004-321447 + 15 1.71e-11 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC GATTTGTATT chrXII:656838-657201 + 8 1.71e-11 TGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC AATTTTCTTG chrX:617694-618146 - 49 1.59e-10 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTTTGTT chrV:288189-288830 + 36 1.86e-10 GATTTCAAGT CTGTCGCCTTAACCACTCGGCCATAGTGCC TATCATTATG chrXIII:259005-259450 + 33 4.56e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC ATACTAACTT chrXII:167768-168266 + 29 4.56e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC ATATGACTAT chrVIII:132796-133342 + 59 4.56e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC ACTTATTATA chrIV:1305395-1305844 - 61 4.56e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC TTAATTTGTA chrIV:437557-438072 - 8 4.56e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC TTACTAA chrXIV:374659-375084 - 48 9.14e-10 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAGTCCGC TTATTTTTCT chrIV:1095179-1095663 + 61 9.14e-10 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAGTCCGC TAACATAAGA chrXII:962810-963279 + 32 1.36e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrXI:84023-84428 - 33 1.36e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATACAAATTT chrX:424283-424723 + 33 1.36e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrXVI:622302-622862 + 70 1.76e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC A chrVIII:358322-358759 + 50 1.76e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrVIII:237749-238072 + 50 1.76e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrVII:440632-441012 + 6 1.76e-09 TCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC ATATATTTTA chrII:36243-36618 - 18 1.76e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACAACTAA chrXII:605157-605634 + 58 2.00e-09 TGCTATAAGC ACGAAGCTCTAACCACTGAGCTACACGAGC ATTTTCGAAA chrXIII:586423-586898 + 70 2.27e-09 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC A chrXIII:372217-372767 + 47 2.27e-09 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC AGGTTTTATT chrXI:307937-308486 + 27 2.27e-09 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrVII:412105-412581 + 45 2.27e-09 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC AGTTTTTTGA chrV:469254-469733 - 14 2.27e-09 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC AATTATTTCT chrV:438498-438967 - 18 2.27e-09 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC TAATTTGTTG chrIV:1150675-1151172 + 39 2.27e-09 GAAATAGCAG GCATCGCCTTAACCACTCGGCCACTGGGAC TGAAACACTT chrXV:228010-228646 - 53 3.68e-09 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TAATATTTTA chrXI:74440-74795 - 57 3.68e-09 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TAATTGCTAT chrVII:730954-731402 - 9 3.68e-09 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TTTTTGAC chrVI:137258-137787 + 58 3.68e-09 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC AGTCACTTTT chrIII:127507-127902 - 62 3.68e-09 TTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrXV:464283-464704 - 7 5.86e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTGTTA chrXIV:546570-547705 - 7 5.86e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC GATTAT chrXIII:195951-196301 + 65 5.86e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTGTGA chrXII:92416-92732 - 24 5.86e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTATTAACTT chrVIII:388689-389212 + 66 5.86e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC ATGTA chrXIII:504669-505165 - 28 6.56e-09 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCTGT chrVII:205307-205787 - 24 6.56e-09 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXVI:860122-860687 - 25 7.33e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrXVI:572006-572526 - 53 7.33e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC GAAGTATTGT chrX:396568-396950 + 58 7.33e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTACTTTTGA chrIV:83319-83817 - 30 7.33e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TAAGTGAACT chrXIII:808115-808524 + 19 1.71e-08 GGATCAGAAC CGAAAGTGATAACCACTACACTATAGGACC TTTTTCTTCT chrXII:448462-448986 + 18 1.71e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC GGAACTTCTT chrVIII:133943-134793 - 3 1.71e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC GG chrIII:168112-168553 + 61 1.71e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC AGGACTTCTT chrXVI:581844-582274 - 53 1.90e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TCTTTTGTTG chrXIII:480405-480918 + 53 1.90e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TACTTATTGT chrVII:122025-122535 - 39 1.90e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TAATTCGTTG chrIV:1201552-1202012 - 18 1.90e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TATTTATTTG chrXIII:572664-573173 + 58 2.31e-08 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC TGTCTGTTAT chrIV:1175610-1176062 - 43 2.31e-08 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrV:130964-131371 + 7 3.09e-08 CAAAAC CGAAAGTGATAACCACTACACTATAAAACC TCTTAATTAT chrII:350599-351041 - 57 3.09e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAAAACC CTTTTATTGA chrXV:110847-111207 + 27 4.90e-08 CCTTGGAAGG GTGGGATGATAACCACTACACTAACCGCCC GGGTTAATTG chrXVI:744051-744520 - 49 9.76e-08 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC TTTTACACTG chrVII:1004028-1004424 - 40 9.76e-08 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC AAACCCTTGA chrVII:661486-661988 - 62 9.76e-08 CATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC AAATTTTTAC chrXIII:837729-838209 - 9 1.57e-07 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TCAATTAA chrXIII:168681-169003 - 3 1.57e-07 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TG chrX:542729-543259 + 71 1.57e-07 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG chrVI:210414-210939 + 52 1.57e-07 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TCGTTTTTGT chrVI:167172-167671 - 66 1.57e-07 AGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TCGTTTTTGT chrX:374224-374803 + 3 2.65e-07 AG CGCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrX:355204-355714 - 47 2.65e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrX:204521-204984 - 33 2.65e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA TTTTTATGTT chrIX:324162-324606 + 11 2.65e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA ATATTAGATG chrIV:568711-569250 - 34 2.65e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrII:405678-406331 - 6 2.65e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAA chrXIII:131626-132112 + 48 2.26e-06 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAAATTTCTT chrXI:162433-162677 + 24 2.26e-06 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAATATTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGNNSSCTYWAMCCACTARRCYAHVNVVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:880190-880552 1.4e-12 18_[+2]_52 chrXIV:602062-602561 1.4e-12 50_[-2]_20 chrXII:734592-734971 1.4e-12 70_[-2] chrXIII:321004-321447 1.7e-11 14_[+2]_56 chrXII:656838-657201 1.7e-11 7_[+2]_63 chrX:617694-618146 1.6e-10 48_[-2]_22 chrV:288189-288830 1.9e-10 35_[+2]_35 chrXIII:259005-259450 4.6e-10 32_[+2]_38 chrXII:167768-168266 4.6e-10 28_[+2]_42 chrVIII:132796-133342 4.6e-10 58_[+2]_12 chrIV:1305395-1305844 4.6e-10 60_[-2]_10 chrIV:437557-438072 4.6e-10 7_[-2]_63 chrXIV:374659-375084 9.1e-10 47_[-2]_23 chrIV:1095179-1095663 9.1e-10 60_[+2]_10 chrXII:962810-963279 1.4e-09 31_[+2]_39 chrXI:84023-84428 1.4e-09 32_[-2]_38 chrX:424283-424723 1.4e-09 32_[+2]_38 chrXVI:622302-622862 1.8e-09 69_[+2]_1 chrVIII:358322-358759 1.8e-09 49_[+2]_21 chrVIII:237749-238072 1.8e-09 49_[+2]_21 chrVII:440632-441012 1.8e-09 5_[+2]_65 chrII:36243-36618 1.8e-09 17_[-2]_53 chrXII:605157-605634 2e-09 57_[+2]_13 chrXIII:586423-586898 2.3e-09 69_[+2]_1 chrXIII:372217-372767 2.3e-09 46_[+2]_24 chrXI:307937-308486 2.3e-09 26_[+2]_44 chrVII:412105-412581 2.3e-09 44_[+2]_26 chrV:469254-469733 2.3e-09 13_[-2]_57 chrV:438498-438967 2.3e-09 17_[-2]_53 chrIV:1150675-1151172 2.3e-09 38_[+2]_32 chrXV:228010-228646 3.7e-09 52_[-2]_18 chrXI:74440-74795 3.7e-09 56_[-2]_14 chrVII:730954-731402 3.7e-09 8_[-2]_62 chrVI:137258-137787 3.7e-09 57_[+2]_13 chrIII:127507-127902 3.7e-09 61_[-2]_9 chrXV:464283-464704 5.9e-09 6_[-2]_64 chrXIV:546570-547705 5.9e-09 6_[-2]_64 chrXIII:195951-196301 5.9e-09 64_[+2]_6 chrXII:92416-92732 5.9e-09 23_[-2]_47 chrVIII:388689-389212 5.9e-09 65_[+2]_5 chrXIII:504669-505165 6.6e-09 27_[-2]_43 chrVII:205307-205787 6.6e-09 23_[-2]_47 chrXVI:860122-860687 7.3e-09 24_[-2]_46 chrXVI:572006-572526 7.3e-09 52_[-2]_18 chrX:396568-396950 7.3e-09 57_[+2]_13 chrIV:83319-83817 7.3e-09 29_[-2]_41 chrXIII:808115-808524 1.7e-08 18_[+2]_52 chrXII:448462-448986 1.7e-08 17_[+2]_53 chrVIII:133943-134793 1.7e-08 2_[-2]_68 chrIII:168112-168553 1.7e-08 60_[+2]_10 chrXVI:581844-582274 1.9e-08 52_[-2]_18 chrXIII:480405-480918 1.9e-08 52_[+2]_18 chrVII:122025-122535 1.9e-08 38_[-2]_32 chrIV:1201552-1202012 1.9e-08 17_[-2]_53 chrXIII:572664-573173 2.3e-08 57_[+2]_13 chrIV:1175610-1176062 2.3e-08 42_[-2]_28 chrV:130964-131371 3.1e-08 6_[+2]_64 chrII:350599-351041 3.1e-08 56_[-2]_14 chrXV:110847-111207 4.9e-08 26_[+2]_44 chrXVI:744051-744520 9.8e-08 48_[-2]_22 chrVII:1004028-1004424 9.8e-08 39_[-2]_31 chrVII:661486-661988 9.8e-08 61_[-2]_9 chrXIII:837729-838209 1.6e-07 8_[-2]_62 chrXIII:168681-169003 1.6e-07 2_[-2]_68 chrX:542729-543259 1.6e-07 70_[+2] chrVI:210414-210939 1.6e-07 51_[+2]_19 chrVI:167172-167671 1.6e-07 65_[-2]_5 chrX:374224-374803 2.6e-07 2_[+2]_68 chrX:355204-355714 2.6e-07 46_[-2]_24 chrX:204521-204984 2.6e-07 32_[-2]_38 chrIX:324162-324606 2.6e-07 10_[+2]_60 chrIV:568711-569250 2.6e-07 33_[-2]_37 chrII:405678-406331 2.6e-07 5_[-2]_65 chrXIII:131626-132112 2.3e-06 47_[+2]_23 chrXI:162433-162677 2.3e-06 23_[+2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGNNSSCTYWAMCCACTARRCYAHVNVVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGNNSSCTYWAMCCACTARRCYAHVNVVSC width=30 seqs=75 chrXVI:880190-880552 ( 19) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXIV:602062-602561 ( 51) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:734592-734971 ( 71) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXIII:321004-321447 ( 15) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXII:656838-657201 ( 8) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrX:617694-618146 ( 49) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrV:288189-288830 ( 36) CTGTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXIII:259005-259450 ( 33) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:167768-168266 ( 29) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrVIII:132796-133342 ( 59) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrIV:1305395-1305844 ( 61) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrIV:437557-438072 ( 8) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXIV:374659-375084 ( 48) CTGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrIV:1095179-1095663 ( 61) CTGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrXII:962810-963279 ( 32) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXI:84023-84428 ( 33) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrX:424283-424723 ( 33) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXVI:622302-622862 ( 70) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:358322-358759 ( 50) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:237749-238072 ( 50) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVII:440632-441012 ( 6) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrII:36243-36618 ( 18) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrXII:605157-605634 ( 58) ACGAAGCTCTAACCACTGAGCTACACGAGC 1 chrXIII:586423-586898 ( 70) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXIII:372217-372767 ( 47) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:307937-308486 ( 27) AGATGCCATAACCGACTAGACCACGAAACC 1 chrVII:412105-412581 ( 45) AGATGCCATAACCGACTAGACCACGAAACC 1 chrV:469254-469733 ( 14) AGATGCCATAACCGACTAGACCACGAAACC 1 chrV:438498-438967 ( 18) AGATGCCATAACCGACTAGACCACGAAACC 1 chrIV:1150675-1151172 ( 39) GCATCGCCTTAACCACTCGGCCACTGGGAC 1 chrXV:228010-228646 ( 53) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXI:74440-74795 ( 57) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrVII:730954-731402 ( 9) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrVI:137258-137787 ( 58) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrIII:127507-127902 ( 62) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXV:464283-464704 ( 7) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXIV:546570-547705 ( 7) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXIII:195951-196301 ( 65) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXII:92416-92732 ( 24) GCGAGAATCATACCACTAGACCACACGCCC 1 chrVIII:388689-389212 ( 66) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXIII:504669-505165 ( 28) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrVII:205307-205787 ( 24) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXVI:860122-860687 ( 25) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXVI:572006-572526 ( 53) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrX:396568-396950 ( 58) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrIV:83319-83817 ( 30) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:808115-808524 ( 19) CGAAAGTGATAACCACTACACTATAGGACC 1 chrXII:448462-448986 ( 18) CGAAAGTGATAACCACTACACTATAGGACC 1 chrVIII:133943-134793 ( 3) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIII:168112-168553 ( 61) CGAAAGTGATAACCACTACACTATAGGACC 1 chrXVI:581844-582274 ( 53) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrXIII:480405-480918 ( 53) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVII:122025-122535 ( 39) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1201552-1202012 ( 18) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrXIII:572664-573173 ( 58) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrIV:1175610-1176062 ( 43) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrV:130964-131371 ( 7) CGAAAGTGATAACCACTACACTATAAAACC 1 chrII:350599-351041 ( 57) CGAAAGTGATAACCACTACACTATAAAACC 1 chrXV:110847-111207 ( 27) GTGGGATGATAACCACTACACTAACCGCCC 1 chrXVI:744051-744520 ( 49) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:1004028-1004424 ( 40) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:661486-661988 ( 62) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrXIII:837729-838209 ( 9) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrXIII:168681-169003 ( 3) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrX:542729-543259 ( 71) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:210414-210939 ( 52) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:167172-167671 ( 66) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrX:374224-374803 ( 3) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:355204-355714 ( 47) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:204521-204984 ( 33) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrIX:324162-324606 ( 11) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrIV:568711-569250 ( 34) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrII:405678-406331 ( 6) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrXIII:131626-132112 ( 48) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXI:162433-162677 ( 24) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGNNSSCTYWAMCCACTARRCYAHVNVVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 38624 bayes= 7.44893 E= 9.6e-205 -134 137 -7 -70 -251 -7 148 -51 1 21 58 -81 -12 21 21 -19 -93 117 103 -1287 -93 103 117 -1287 -134 155 -156 -34 -192 -29 -18 95 -93 88 -288 58 40 -229 -1287 88 85 -107 -42 -51 77 121 -288 -1287 -1287 235 -1287 -1287 -19 148 -29 -351 168 -1287 -288 -1287 -1287 210 -1287 -93 -1287 -1287 -1287 172 62 -18 21 -119 1 3 133 -1287 30 -1287 168 -1287 -1287 235 -1287 -1287 -1287 158 -1287 44 172 -1287 -1287 -1287 35 93 -1287 -34 1 37 82 -170 -12 21 51 -51 35 12 65 -170 -5 44 103 -292 -192 125 98 -219 -192 212 -156 -1287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGNNSSCTYWAMCCACTARRCYAHVNVVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 75 E= 9.6e-205 0.120000 0.506667 0.186667 0.186667 0.053333 0.186667 0.546667 0.213333 0.306667 0.226667 0.293333 0.173333 0.280000 0.226667 0.226667 0.266667 0.160000 0.440000 0.400000 0.000000 0.160000 0.400000 0.440000 0.000000 0.120000 0.573333 0.066667 0.240000 0.080000 0.160000 0.173333 0.586667 0.160000 0.360000 0.026667 0.453333 0.400000 0.040000 0.000000 0.560000 0.546667 0.093333 0.146667 0.213333 0.520000 0.453333 0.026667 0.000000 0.000000 1.000000 0.000000 0.000000 0.266667 0.546667 0.160000 0.026667 0.973333 0.000000 0.026667 0.000000 0.000000 0.840000 0.000000 0.160000 0.000000 0.000000 0.000000 1.000000 0.466667 0.173333 0.226667 0.133333 0.306667 0.200000 0.493333 0.000000 0.373333 0.000000 0.626667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.586667 0.000000 0.413333 1.000000 0.000000 0.000000 0.000000 0.386667 0.373333 0.000000 0.240000 0.306667 0.253333 0.346667 0.093333 0.280000 0.226667 0.280000 0.213333 0.386667 0.213333 0.306667 0.093333 0.293333 0.266667 0.400000 0.040000 0.080000 0.466667 0.386667 0.066667 0.080000 0.853333 0.066667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGNNSSCTYWAMCCACTARRCYAHVNVVSC MEME-2 regular expression -------------------------------------------------------------------------------- C[GT][AGC][ATCG][CG][GC][CT]T[TC][TA][AT][AC]C[CA]ACT[AG][GAC][GA]C[CT]A[ACT][GAC][AGCT][AGC][GAC][CG]C -------------------------------------------------------------------------------- Time 551.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TATAGTGTAACGGCTATCACATCACGCTTT MEME-3 width = 30 sites = 9 llr = 336 E-value = 4.2e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATAGTGTAACGGCTATCACATCACGCTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 19:a::::a9:::::a::a:9::9:::::1 pos.-specific C ::::::::::a::a:::a:a::9:a18:2: probability G :1::a:a::1:aa:::::::1::1:9:::: matrix T 9:a::a:a::::::a:a::::a1:::2a89 bits 2.4 * * **** * * * 2.1 * * **** * * * 1.9 * * **** * * * ** 1.6 ******* ********** ** ** * Relative 1.4 ******* ********** ** **** Entropy 1.2 ****************************** (53.8 bits) 0.9 ****************************** 0.7 ****************************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel TATAGTGTAACGGCTATCACATCACGCTTT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAGTGTAACGGCTATCACATCACGCTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:210001-210454 - 52 1.58e-18 TATTGTCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrXIII:290581-291130 + 1 1.58e-18 . TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrXI:140809-141343 - 29 1.58e-18 TGTAATCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrX:115781-116250 - 11 1.58e-18 TATAATCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrV:176842-177440 + 13 1.58e-18 TTTGATCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrIX:370251-370577 + 58 1.58e-18 TATAATCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrII:644956-645433 + 28 1.58e-18 TATTATCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrIX:197404-197799 + 46 7.27e-17 TCAAATCCGA TGTAGTGTAACGGCTATCACATCACGTTCT CACCGTGGAG chrIV:1075299-1075752 - 35 3.21e-14 ATATTGTTCC AATAGTGTAGCGGCTATCACGTTGCCTTCA CACGGCAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAGTGTAACGGCTATCACATCACGCTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:210001-210454 1.6e-18 51_[-3]_19 chrXIII:290581-291130 1.6e-18 [+3]_70 chrXI:140809-141343 1.6e-18 28_[-3]_42 chrX:115781-116250 1.6e-18 10_[-3]_60 chrV:176842-177440 1.6e-18 12_[+3]_58 chrIX:370251-370577 1.6e-18 57_[+3]_13 chrII:644956-645433 1.6e-18 27_[+3]_43 chrIX:197404-197799 7.3e-17 45_[+3]_25 chrIV:1075299-1075752 3.2e-14 34_[-3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAGTGTAACGGCTATCACATCACGCTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATAGTGTAACGGCTATCACATCACGCTTT width=30 seqs=9 chrXVI:210001-210454 ( 52) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrXIII:290581-291130 ( 1) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrXI:140809-141343 ( 29) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrX:115781-116250 ( 11) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrV:176842-177440 ( 13) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrIX:370251-370577 ( 58) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrII:644956-645433 ( 28) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrIX:197404-197799 ( 46) TGTAGTGTAACGGCTATCACATCACGTTCT 1 chrIV:1075299-1075752 ( 35) AATAGTGTAGCGGCTATCACGTTGCCTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAGTGTAACGGCTATCACATCACGCTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 38624 bayes= 12.2013 E= 4.2e-054 -145 -982 -982 155 155 -982 -82 -982 -982 -982 -982 172 172 -982 -982 -982 -982 -982 235 -982 -982 -982 -982 172 -982 -982 235 -982 -982 -982 -982 172 172 -982 -982 -982 155 -982 -82 -982 -982 235 -982 -982 -982 -982 235 -982 -982 -982 235 -982 -982 235 -982 -982 -982 -982 -982 172 172 -982 -982 -982 -982 -982 -982 172 -982 235 -982 -982 172 -982 -982 -982 -982 235 -982 -982 155 -982 -82 -982 -982 -982 -982 172 -982 218 -982 -145 155 -982 -82 -982 -982 235 -982 -982 -982 -82 218 -982 -982 199 -982 -45 -982 -982 -982 172 -982 18 -982 135 -145 -982 -982 155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAGTGTAACGGCTATCACATCACGCTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 9 E= 4.2e-054 0.111111 0.000000 0.000000 0.888889 0.888889 0.000000 0.111111 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.888889 0.000000 0.111111 0.888889 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.777778 0.000000 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.222222 0.000000 0.777778 0.111111 0.000000 0.000000 0.888889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAGTGTAACGGCTATCACATCACGCTTT MEME-3 regular expression -------------------------------------------------------------------------------- TATAGTGTAACGGCTATCACATCACG[CT]T[TC]T -------------------------------------------------------------------------------- Time 804.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71771-73280 9.30e-01 100 chrI:81913-82339 2.63e-01 100 chrI:138923-139792 7.57e-01 100 chrI:141057-143701 9.38e-01 100 chrI:166173-166599 9.37e-01 100 chrII:9450-10144 7.22e-01 100 chrII:36243-36618 5.70e-13 17_[-2(1.76e-09)]_24_[+1(1.01e-10)]_\ 1 chrII:44772-45391 8.91e-01 100 chrII:60830-61200 2.33e-01 100 chrII:87936-88594 7.09e-01 100 chrII:88922-90251 4.13e-01 100 chrII:144048-144745 2.87e-01 100 chrII:165100-165498 5.03e-01 100 chrII:167907-168222 9.47e-01 100 chrII:181167-181721 7.75e-01 100 chrII:197305-197853 4.18e-08 1_[+1(6.59e-12)]_71 chrII:226976-227367 3.09e-01 100 chrII:266212-266744 9.83e-01 100 chrII:326473-327150 9.36e-07 39_[-1(4.16e-10)]_33 chrII:332154-333080 8.63e-01 100 chrII:347410-347900 2.73e-02 44_[+1(3.90e-05)]_28 chrII:350599-351041 6.63e-10 61_[+3(3.36e-09)]_9 chrII:375124-375717 1.19e-02 53_[-3(1.82e-05)]_17 chrII:380944-381502 9.34e-01 100 chrII:405678-406331 5.49e-09 5_[-2(2.65e-07)]_5_[+1(6.85e-09)]_\ 32 chrII:406577-407933 7.54e-01 100 chrII:415488-416009 9.06e-01 100 chrII:443857-446164 7.47e-01 100 chrII:477034-477799 1.49e-02 66_[-2(2.50e-05)]_4 chrII:592883-593263 9.93e-01 100 chrII:604090-607120 5.67e-01 100 chrII:644956-645433 2.70e-24 27_[+3(1.58e-18)]_[+1(1.40e-12)]_15 chrIII:72-1106 7.81e-03 3_[+2(7.36e-06)]_67 chrIII:1475-1757 5.81e-01 100 chrIII:38414-39383 2.47e-01 100 chrIII:78347-78698 8.65e-01 100 chrIII:90788-91115 5.22e-01 100 chrIII:123341-123802 1.22e-07 64_[-1(1.16e-11)]_8 chrIII:127507-127902 4.40e-05 61_[-2(3.68e-09)]_9 chrIII:137187-138983 3.90e-01 100 chrIII:142358-142990 9.82e-01 100 chrIII:149747-150147 2.96e-05 57_[+1(8.83e-08)]_15 chrIII:150990-151566 2.04e-08 64_[-1(4.22e-12)]_8 chrIII:163461-163894 4.91e-01 100 chrIII:168112-168553 1.26e-16 27_[-1(7.53e-10)]_[-3(3.36e-09)]_15 chrIII:177197-178785 9.50e-01 100 chrIII:227778-228206 1.31e-01 100 chrIII:295333-295923 3.62e-01 100 chrIII:316235-316592 1.20e-01 100 chrIV:83319-83817 3.69e-12 29_[-2(7.33e-09)]_4_[+1(8.00e-11)]_\ 9 chrIV:117160-118212 4.47e-01 100 chrIV:129116-131039 9.99e-01 100 chrIV:216570-217742 9.36e-01 100 chrIV:221644-222367 2.17e-01 100 chrIV:229464-230726 9.50e-01 100 chrIV:306218-309385 9.04e-01 100 chrIV:321633-321991 6.62e-01 100 chrIV:340546-341822 4.06e-01 100 chrIV:355579-356934 8.14e-01 100 chrIV:358045-358509 8.46e-01 100 chrIV:359165-359761 3.74e-01 100 chrIV:410223-410810 3.19e-01 100 chrIV:411026-411664 2.29e-01 100 chrIV:415657-417305 9.87e-02 100 chrIV:434056-435076 4.94e-01 100 chrIV:437557-438072 1.26e-06 7_[-2(4.56e-10)]_63 chrIV:465122-469329 3.46e-01 100 chrIV:488425-488982 9.59e-01 100 chrIV:490964-492553 6.52e-01 100 chrIV:519657-519966 6.29e-02 28_[+1(3.90e-05)]_44 chrIV:520719-521398 3.29e-01 100 chrIV:538856-539296 3.18e-01 100 chrIV:555758-556663 4.02e-01 100 chrIV:568711-569250 1.90e-09 33_[-2(2.65e-07)]_5_[+1(6.85e-09)]_\ 4 chrIV:578900-580721 3.67e-01 100 chrIV:600795-601759 5.50e-02 41_[+2(3.77e-05)]_29 chrIV:619735-620220 9.22e-05 50_[-1(1.14e-08)]_22 chrIV:667774-668556 5.66e-01 100 chrIV:757462-758431 3.12e-01 100 chrIV:765120-765633 8.75e-01 100 chrIV:768325-770021 3.96e-02 26_[-1(2.86e-05)]_46 chrIV:802580-802837 2.21e-01 100 chrIV:805782-807079 1.31e-01 100 chrIV:835867-837965 5.15e-02 100 chrIV:884286-884618 4.81e-06 54_[+1(1.10e-09)]_18 chrIV:885183-885401 6.42e-01 100 chrIV:891069-894516 9.78e-01 100 chrIV:945670-946637 3.07e-02 100 chrIV:973220-975986 9.19e-01 100 chrIV:992678-993243 6.93e-01 100 chrIV:1013696-1013998 3.94e-01 100 chrIV:1016950-1017491 4.26e-08 45_[-1(1.40e-12)]_27 chrIV:1075299-1075752 1.49e-19 5_[-1(1.99e-10)]_1_[-3(3.21e-14)]_\ 36 chrIV:1080460-1080812 8.46e-01 100 chrIV:1095179-1095663 5.69e-12 7_[-1(6.20e-10)]_25_[+2(9.14e-10)]_\ 10 chrIV:1150675-1151172 5.10e-06 38_[+2(2.27e-09)]_32 chrIV:1175610-1176062 5.72e-05 42_[-2(2.31e-08)]_28 chrIV:1201552-1202012 5.61e-13 17_[-2(1.90e-08)]_6_[+1(4.22e-12)]_\ 19 chrIV:1236523-1237997 6.89e-01 100 chrIV:1300682-1301352 9.34e-01 100 chrIV:1305395-1305844 6.60e-06 60_[-2(4.56e-10)]_10 chrIV:1328789-1329975 5.75e-01 100 chrIV:1352142-1353064 9.36e-01 100 chrIV:1353899-1356042 7.02e-01 100 chrIV:1359426-1359856 9.90e-01 100 chrIV:1401045-1401975 8.36e-01 100 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1.29e-01 100 chrV:99874-100282 9.75e-01 100 chrV:117591-118290 5.72e-01 100 chrV:130964-131371 8.11e-10 1_[-3(3.36e-09)]_69 chrV:135181-136135 6.21e-02 100 chrV:138484-139982 7.04e-01 100 chrV:140174-141328 2.00e-01 100 chrV:176842-177440 2.70e-24 12_[+3(1.58e-18)]_[+1(1.40e-12)]_30 chrV:221973-225127 1.90e-01 100 chrV:249785-250529 2.08e-03 26_[-2(4.18e-05)]_44 chrV:270181-271094 2.11e-01 100 chrV:282845-283157 6.89e-01 100 chrV:288189-288830 1.43e-06 35_[+2(1.86e-10)]_35 chrV:305808-307376 2.95e-01 100 chrV:311725-312297 8.60e-07 70_[-1(4.93e-11)]_2 chrV:354795-355297 1.79e-01 100 chrV:362076-362517 5.56e-01 100 chrV:363656-365205 2.07e-01 100 chrV:396173-396587 9.41e-01 100 chrV:423095-424336 6.94e-01 100 chrV:431031-432052 7.13e-01 100 chrV:434396-435147 1.25e-01 100 chrV:435583-435935 7.61e-08 51_[-1(4.22e-12)]_21 chrV:438498-438967 3.55e-12 17_[-2(2.27e-09)]_7_[+1(1.99e-10)]_\ 18 chrV:441798-442694 6.74e-01 100 chrV:443099-443340 7.81e-08 41_[-1(6.59e-12)]_31 chrV:469254-469733 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chrXVI:350220-353482 6.92e-01 100 chrXVI:378657-378992 2.56e-01 100 chrXVI:404589-405956 4.15e-01 100 chrXVI:406189-407756 8.88e-01 100 chrXVI:431959-432313 1.32e-01 100 chrXVI:432544-434370 5.86e-01 100 chrXVI:435636-436187 3.06e-05 40_[-1(5.15e-08)]_32 chrXVI:519930-520552 4.25e-01 100 chrXVI:559960-560471 7.84e-06 41_[-1(6.20e-10)]_31 chrXVI:572006-572526 8.10e-05 52_[-2(7.33e-09)]_18 chrXVI:581844-582274 3.59e-05 52_[-2(1.90e-08)]_18 chrXVI:622302-622862 1.05e-11 16_[-1(6.20e-10)]_25_[+2(1.76e-09)]_\ 1 chrXVI:645163-645715 9.37e-01 100 chrXVI:679021-679371 7.21e-01 100 chrXVI:689379-689872 4.62e-01 100 chrXVI:699678-700704 4.77e-01 100 chrXVI:731588-732301 5.03e-01 100 chrXVI:744051-744520 1.62e-04 48_[-2(9.76e-08)]_22 chrXVI:769013-769486 7.97e-07 16_[-1(4.16e-10)]_56 chrXVI:775644-776049 5.94e-02 10_[+2(3.40e-05)]_60 chrXVI:794469-796204 8.07e-01 100 chrXVI:810581-811405 1.71e-01 100 chrXVI:819344-820783 6.83e-02 38_[+1(3.30e-05)]_34 chrXVI:842802-843875 2.55e-01 100 chrXVI:856819-857161 1.89e-01 100 chrXVI:860122-860687 3.08e-12 24_[-2(7.33e-09)]_4_[+1(8.00e-11)]_\ 14 chrXVI:880190-880552 2.78e-08 18_[+2(1.44e-12)]_52 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************