******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HIR1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71673-73731 1.0000 100 chrI:81925-82308 1.0000 100 chrI:138946-139367 1.0000 100 chrI:166169-166874 1.0000 100 chrII:9455-9906 1.0000 100 chrII:36242-36849 1.0000 100 chrII:44938-45388 1.0000 100 chrII:60665-61225 1.0000 100 chrII:88954-90328 1.0000 100 chrII:165081-165651 1.0000 100 chrII:167775-169537 1.0000 100 chrII:181333-181642 1.0000 100 chrII:197166-197838 1.0000 100 chrII:226971-227342 1.0000 100 chrII:234615-236000 1.0000 100 chrII:254677-257832 1.0000 100 chrII:266201-266791 1.0000 100 chrII:326457-327167 1.0000 100 chrII:332286-333048 1.0000 100 chrII:347402-347951 1.0000 100 chrII:350612-351054 1.0000 100 chrII:405661-406209 1.0000 100 chrII:415473-416129 1.0000 100 chrII:477031-477744 1.0000 100 chrII:592860-593298 1.0000 100 chrII:604080-607144 1.0000 100 chrII:642856-643084 1.0000 100 chrII:644937-645401 1.0000 100 chrIII:63-1668 1.0000 100 chrIII:29556-31196 1.0000 100 chrIII:58736-58997 1.0000 100 chrIII:78122-78875 1.0000 100 chrIII:82455-82655 1.0000 100 chrIII:90779-91092 1.0000 100 chrIII:123380-123834 1.0000 100 chrIII:127506-127896 1.0000 100 chrIII:142406-142985 1.0000 100 chrIII:149726-150202 1.0000 100 chrIII:151117-151585 1.0000 100 chrIII:162117-164282 1.0000 100 chrIII:168103-168552 1.0000 100 chrIII:177149-178814 1.0000 100 chrIII:227755-228210 1.0000 100 chrIII:295329-295945 1.0000 100 chrIII:308666-308985 1.0000 100 chrIII:316224-316596 1.0000 100 chrIV:83337-83814 1.0000 100 chrIV:117156-118208 1.0000 100 chrIV:129257-129466 1.0000 100 chrIV:129614-131136 1.0000 100 chrIV:217155-217719 1.0000 100 chrIV:221022-222373 1.0000 100 chrIV:229470-231393 1.0000 100 chrIV:306680-310191 1.0000 100 chrIV:321663-321964 1.0000 100 chrIV:322216-323633 1.0000 100 chrIV:340458-341672 1.0000 100 chrIV:357776-358641 1.0000 100 chrIV:359130-359780 1.0000 100 chrIV:410213-410830 1.0000 100 chrIV:411067-411668 1.0000 100 chrIV:434056-434971 1.0000 100 chrIV:437541-438104 1.0000 100 chrIV:488464-488996 1.0000 100 chrIV:489644-491296 1.0000 100 chrIV:519652-519910 1.0000 100 chrIV:520619-521175 1.0000 100 chrIV:538839-539564 1.0000 100 chrIV:541171-541925 1.0000 100 chrIV:555429-556640 1.0000 100 chrIV:568693-569380 1.0000 100 chrIV:578999-580902 1.0000 100 chrIV:600617-601732 1.0000 100 chrIV:619742-620249 1.0000 100 chrIV:667772-668575 1.0000 100 chrIV:802584-802845 1.0000 100 chrIV:835786-837941 1.0000 100 chrIV:884284-884721 1.0000 100 chrIV:914023-916303 1.0000 100 chrIV:945770-946633 1.0000 100 chrIV:992678-993212 1.0000 100 chrIV:1013456-1014005 1.0000 100 chrIV:1016986-1017596 1.0000 100 chrIV:1075306-1075742 1.0000 100 chrIV:1095128-1095712 1.0000 100 chrIV:1150679-1151194 1.0000 100 chrIV:1175602-1176589 1.0000 100 chrIV:1201524-1201972 1.0000 100 chrIV:1256930-1257085 1.0000 100 chrIV:1300636-1301348 1.0000 100 chrIV:1305412-1305898 1.0000 100 chrIV:1351959-1353078 1.0000 100 chrIV:1354327-1356009 1.0000 100 chrIV:1359108-1361296 1.0000 100 chrIV:1401198-1401957 1.0000 100 chrIV:1450731-1451243 1.0000 100 chrIV:1461071-1461850 1.0000 100 chrIV:1488980-1489970 1.0000 100 chrIX:68196-69545 1.0000 100 chrIX:98261-100072 1.0000 100 chrIX:174687-175733 1.0000 100 chrIX:183280-183692 1.0000 100 chrIX:197335-197805 1.0000 100 chrIX:210657-210904 1.0000 100 chrIX:248608-249016 1.0000 100 chrIX:254198-254597 1.0000 100 chrIX:257358-258171 1.0000 100 chrIX:299850-300523 1.0000 100 chrIX:316099-318258 1.0000 100 chrIX:322457-324543 1.0000 100 chrIX:325549-326075 1.0000 100 chrIX:336102-336654 1.0000 100 chrIX:370256-370592 1.0000 100 chrIX:382075-382371 1.0000 100 chrIX:388837-390954 1.0000 100 chrV:6185-6726 1.0000 100 chrV:53496-54106 1.0000 100 chrV:61088-62131 1.0000 100 chrV:67106-69354 1.0000 100 chrV:85017-86796 1.0000 100 chrV:99851-100287 1.0000 100 chrV:117149-118305 1.0000 100 chrV:130787-131387 1.0000 100 chrV:135216-136134 1.0000 100 chrV:138477-140916 1.0000 100 chrV:176850-177467 1.0000 100 chrV:249759-250553 1.0000 100 chrV:268894-270770 1.0000 100 chrV:288165-288795 1.0000 100 chrV:305768-306934 1.0000 100 chrV:311681-312297 1.0000 100 chrV:354795-355213 1.0000 100 chrV:362103-362500 1.0000 100 chrV:396171-397923 1.0000 100 chrV:422740-423621 1.0000 100 chrV:430969-431937 1.0000 100 chrV:434390-435947 1.0000 100 chrV:438497-439037 1.0000 100 chrV:441788-442693 1.0000 100 chrV:443064-443342 1.0000 100 chrV:469248-470130 1.0000 100 chrV:486923-487613 1.0000 100 chrV:550937-551615 1.0000 100 chrVI:4536-4770 1.0000 100 chrVI:64098-65348 1.0000 100 chrVI:82450-85027 1.0000 100 chrVI:95413-95930 1.0000 100 chrVI:101366-102121 1.0000 100 chrVI:137231-137778 1.0000 100 chrVI:157898-158251 1.0000 100 chrVI:162005-162390 1.0000 100 chrVI:167196-167719 1.0000 100 chrVI:180627-181265 1.0000 100 chrVI:191125-191755 1.0000 100 chrVI:210448-210932 1.0000 100 chrVI:220757-222410 1.0000 100 chrVI:223236-224162 1.0000 100 chrVI:226330-226942 1.0000 100 chrVII:110369-110789 1.0000 100 chrVII:115270-115735 1.0000 100 chrVII:122019-122527 1.0000 100 chrVII:148062-149596 1.0000 100 chrVII:166341-167065 1.0000 100 chrVII:185469-185890 1.0000 100 chrVII:205123-206276 1.0000 100 chrVII:254130-254713 1.0000 100 chrVII:277030-278731 1.0000 100 chrVII:287164-287684 1.0000 100 chrVII:310377-312259 1.0000 100 chrVII:319109-320097 1.0000 100 chrVII:328358-329355 1.0000 100 chrVII:364904-366692 1.0000 100 chrVII:371180-371539 1.0000 100 chrVII:400779-401620 1.0000 100 chrVII:405463-405913 1.0000 100 chrVII:411936-412594 1.0000 100 chrVII:422728-423362 1.0000 100 chrVII:438550-439874 1.0000 100 chrVII:440524-441000 1.0000 100 chrVII:478979-482841 1.0000 100 chrVII:531399-531812 1.0000 100 chrVII:533783-535200 1.0000 100 chrVII:541707-542186 1.0000 100 chrVII:544410-544898 1.0000 100 chrVII:554999-557554 1.0000 100 chrVII:561275-561710 1.0000 100 chrVII:648774-649360 1.0000 100 chrVII:661515-661987 1.0000 100 chrVII:700429-701166 1.0000 100 chrVII:706918-707196 1.0000 100 chrVII:726394-728117 1.0000 100 chrVII:730953-731460 1.0000 100 chrVII:736190-736672 1.0000 100 chrVII:738773-739589 1.0000 100 chrVII:774136-774677 1.0000 100 chrVII:779360-779771 1.0000 100 chrVII:784608-785658 1.0000 100 chrVII:787071-788794 1.0000 100 chrVII:794171-794561 1.0000 100 chrVII:806194-808044 1.0000 100 chrVII:823349-823698 1.0000 100 chrVII:828445-828978 1.0000 100 chrVII:845351-846002 1.0000 100 chrVII:856549-857715 1.0000 100 chrVII:876127-877532 1.0000 100 chrVII:878543-879118 1.0000 100 chrVII:882441-883964 1.0000 100 chrVII:930857-931163 1.0000 100 chrVII:1000303-1000648 1.0000 100 chrVII:1004029-1004415 1.0000 100 chrVIII:34358-36347 1.0000 100 chrVIII:62515-62989 1.0000 100 chrVIII:74874-75932 1.0000 100 chrVIII:103715-105478 1.0000 100 chrVIII:115427-116303 1.0000 100 chrVIII:125892-126327 1.0000 100 chrVIII:132800-133371 1.0000 100 chrVIII:134075-134609 1.0000 100 chrVIII:145637-146774 1.0000 100 chrVIII:148917-149242 1.0000 100 chrVIII:174297-175846 1.0000 100 chrVIII:237090-238090 1.0000 100 chrVIII:296738-297257 1.0000 100 chrVIII:358292-358802 1.0000 100 chrVIII:381490-383365 1.0000 100 chrVIII:388685-389212 1.0000 100 chrVIII:411023-411773 1.0000 100 chrVIII:451272-453019 1.0000 100 chrVIII:466902-467258 1.0000 100 chrVIII:475514-475917 1.0000 100 chrVIII:505812-506204 1.0000 100 chrVIII:555722-556512 1.0000 100 chrX:58993-59372 1.0000 100 chrX:73365-77057 1.0000 100 chrX:90031-90442 1.0000 100 chrX:115753-116258 1.0000 100 chrX:120294-121880 1.0000 100 chrX:157419-157937 1.0000 100 chrX:160025-160254 1.0000 100 chrX:196795-197525 1.0000 100 chrX:204490-205036 1.0000 100 chrX:227756-228657 1.0000 100 chrX:233735-234123 1.0000 100 chrX:234300-234591 1.0000 100 chrX:348912-349471 1.0000 100 chrX:354161-354541 1.0000 100 chrX:355207-355752 1.0000 100 chrX:374210-374855 1.0000 100 chrX:378119-378580 1.0000 100 chrX:390929-392244 1.0000 100 chrX:396546-397039 1.0000 100 chrX:414751-415312 1.0000 100 chrX:415717-416285 1.0000 100 chrX:422698-423288 1.0000 100 chrX:424271-424720 1.0000 100 chrX:517647-518089 1.0000 100 chrX:523920-524362 1.0000 100 chrX:531296-532195 1.0000 100 chrX:538523-538827 1.0000 100 chrX:540713-542333 1.0000 100 chrX:542765-543249 1.0000 100 chrX:545383-545748 1.0000 100 chrX:607621-609115 1.0000 100 chrX:617679-618247 1.0000 100 chrX:651232-651616 1.0000 100 chrX:652022-652901 1.0000 100 chrX:663344-664375 1.0000 100 chrX:690582-690891 1.0000 100 chrX:702995-703690 1.0000 100 chrX:745091-745749 1.0000 100 chrXI:765-1099 1.0000 100 chrXI:46629-47026 1.0000 100 chrXI:67794-68887 1.0000 100 chrXI:69110-69432 1.0000 100 chrXI:74425-74820 1.0000 100 chrXI:84009-84423 1.0000 100 chrXI:99717-100240 1.0000 100 chrXI:108567-110116 1.0000 100 chrXI:140778-142961 1.0000 100 chrXI:158183-159628 1.0000 100 chrXI:162428-162941 1.0000 100 chrXI:202287-203311 1.0000 100 chrXI:219580-220089 1.0000 100 chrXI:257829-260641 1.0000 100 chrXI:302651-303227 1.0000 100 chrXI:307963-308491 1.0000 100 chrXI:312791-314022 1.0000 100 chrXI:325806-327578 1.0000 100 chrXI:379484-379933 1.0000 100 chrXI:382170-382515 1.0000 100 chrXI:430791-431645 1.0000 100 chrXI:457955-459273 1.0000 100 chrXI:490752-491353 1.0000 100 chrXI:513125-513518 1.0000 100 chrXI:517789-518192 1.0000 100 chrXI:578760-579420 1.0000 100 chrXI:614165-614570 1.0000 100 chrXI:617713-619419 1.0000 100 chrXI:666598-666795 1.0000 100 chrXII:5603-5792 1.0000 100 chrXII:48692-49141 1.0000 100 chrXII:92408-92726 1.0000 100 chrXII:167756-168268 1.0000 100 chrXII:214711-215069 1.0000 100 chrXII:232072-234317 1.0000 100 chrXII:241628-242028 1.0000 100 chrXII:262804-263956 1.0000 100 chrXII:282582-283863 1.0000 100 chrXII:348165-348704 1.0000 100 chrXII:366022-366534 1.0000 100 chrXII:368572-370293 1.0000 100 chrXII:370603-371013 1.0000 100 chrXII:374197-374689 1.0000 100 chrXII:424149-424530 1.0000 100 chrXII:426891-427441 1.0000 100 chrXII:448498-449057 1.0000 100 chrXII:459598-460733 1.0000 100 chrXII:498396-500211 1.0000 100 chrXII:521808-522444 1.0000 100 chrXII:592355-592719 1.0000 100 chrXII:605157-605625 1.0000 100 chrXII:628169-628854 1.0000 100 chrXII:636653-639951 1.0000 100 chrXII:656831-657186 1.0000 100 chrXII:673496-674698 1.0000 100 chrXII:687647-687923 1.0000 100 chrXII:713135-713595 1.0000 100 chrXII:732008-732314 1.0000 100 chrXII:734601-734986 1.0000 100 chrXII:780821-781884 1.0000 100 chrXII:783951-784516 1.0000 100 chrXII:795606-797456 1.0000 100 chrXII:818500-820293 1.0000 100 chrXII:837660-839410 1.0000 100 chrXII:875166-876103 1.0000 100 chrXII:897673-899035 1.0000 100 chrXII:902853-904072 1.0000 100 chrXII:921614-922732 1.0000 100 chrXII:930463-931814 1.0000 100 chrXII:932060-932550 1.0000 100 chrXII:962806-963281 1.0000 100 chrXII:975788-976103 1.0000 100 chrXII:1017712-1019827 1.0000 100 chrXII:1028134-1028594 1.0000 100 chrXII:1051940-1052224 1.0000 100 chrXIII:91381-92126 1.0000 100 chrXIII:131565-132104 1.0000 100 chrXIII:145893-147201 1.0000 100 chrXIII:168250-169014 1.0000 100 chrXIII:195936-196309 1.0000 100 chrXIII:224049-224561 1.0000 100 chrXIII:225303-226671 1.0000 100 chrXIII:253235-253556 1.0000 100 chrXIII:258866-259511 1.0000 100 chrXIII:290597-291143 1.0000 100 chrXIII:296736-298899 1.0000 100 chrXIII:302822-303226 1.0000 100 chrXIII:321008-321433 1.0000 100 chrXIII:352084-352906 1.0000 100 chrXIII:353332-353598 1.0000 100 chrXIII:362939-363336 1.0000 100 chrXIII:372198-372773 1.0000 100 chrXIII:378772-379622 1.0000 100 chrXIII:420327-420856 1.0000 100 chrXIII:463427-463857 1.0000 100 chrXIII:480357-480907 1.0000 100 chrXIII:498911-501435 1.0000 100 chrXIII:504645-505222 1.0000 100 chrXIII:551332-551817 1.0000 100 chrXIII:572667-573183 1.0000 100 chrXIII:586407-586903 1.0000 100 chrXIII:650823-652931 1.0000 100 chrXIII:732001-733586 1.0000 100 chrXIII:747720-748191 1.0000 100 chrXIII:748468-748817 1.0000 100 chrXIII:753002-754961 1.0000 100 chrXIII:768180-768450 1.0000 100 chrXIII:808089-808525 1.0000 100 chrXIII:837700-838201 1.0000 100 chrXIII:861213-861430 1.0000 100 chrXIII:887017-889548 1.0000 100 chrXIV:61952-64386 1.0000 100 chrXIV:95998-96466 1.0000 100 chrXIV:102568-103212 1.0000 100 chrXIV:104618-105257 1.0000 100 chrXIV:241389-241774 1.0000 100 chrXIV:301991-303867 1.0000 100 chrXIV:330781-331110 1.0000 100 chrXIV:351098-353316 1.0000 100 chrXIV:374686-375086 1.0000 100 chrXIV:442857-444064 1.0000 100 chrXIV:444212-444831 1.0000 100 chrXIV:493931-495752 1.0000 100 chrXIV:499181-500732 1.0000 100 chrXIV:518837-519148 1.0000 100 chrXIV:546533-547700 1.0000 100 chrXIV:560285-560862 1.0000 100 chrXIV:568054-568508 1.0000 100 chrXIV:569612-570052 1.0000 100 chrXIV:575072-577496 1.0000 100 chrXIV:585483-586539 1.0000 100 chrXIV:602071-602576 1.0000 100 chrXIV:631497-632019 1.0000 100 chrXIV:632491-632888 1.0000 100 chrXIV:715498-715728 1.0000 100 chrXIV:715988-716631 1.0000 100 chrXIV:721098-721754 1.0000 100 chrXIV:725929-726363 1.0000 100 chrXIV:783716-784328 1.0000 100 chrXV:79722-80165 1.0000 100 chrXV:92737-94795 1.0000 100 chrXV:109516-110659 1.0000 100 chrXV:110841-111314 1.0000 100 chrXV:113423-114684 1.0000 100 chrXV:159170-160146 1.0000 100 chrXV:161030-161809 1.0000 100 chrXV:167972-168500 1.0000 100 chrXV:216283-216840 1.0000 100 chrXV:226535-226883 1.0000 100 chrXV:228071-228554 1.0000 100 chrXV:253808-254151 1.0000 100 chrXV:274495-274995 1.0000 100 chrXV:281748-283681 1.0000 100 chrXV:287787-288431 1.0000 100 chrXV:300883-301931 1.0000 100 chrXV:340116-340724 1.0000 100 chrXV:353805-354307 1.0000 100 chrXV:438396-439184 1.0000 100 chrXV:444627-446178 1.0000 100 chrXV:464279-464791 1.0000 100 chrXV:487432-487735 1.0000 100 chrXV:504868-505507 1.0000 100 chrXV:571640-572173 1.0000 100 chrXV:594306-594628 1.0000 100 chrXV:619621-621279 1.0000 100 chrXV:622537-623367 1.0000 100 chrXV:639203-639470 1.0000 100 chrXV:663453-664898 1.0000 100 chrXV:678198-679171 1.0000 100 chrXV:710064-710533 1.0000 100 chrXV:779669-780976 1.0000 100 chrXV:832270-832792 1.0000 100 chrXV:854027-854800 1.0000 100 chrXV:866525-867985 1.0000 100 chrXV:901436-901636 1.0000 100 chrXV:968113-968678 1.0000 100 chrXV:976375-978370 1.0000 100 chrXV:978733-979575 1.0000 100 chrXV:988693-989115 1.0000 100 chrXV:1003902-1004962 1.0000 100 chrXV:1025409-1026187 1.0000 100 chrXV:1027863-1029631 1.0000 100 chrXVI:55851-56352 1.0000 100 chrXVI:75345-77041 1.0000 100 chrXVI:172848-174109 1.0000 100 chrXVI:188586-189392 1.0000 100 chrXVI:209082-210693 1.0000 100 chrXVI:279937-280230 1.0000 100 chrXVI:280568-282974 1.0000 100 chrXVI:302610-304890 1.0000 100 chrXVI:338638-339330 1.0000 100 chrXVI:340049-340918 1.0000 100 chrXVI:378652-379006 1.0000 100 chrXVI:404419-408025 1.0000 100 chrXVI:432517-434409 1.0000 100 chrXVI:435410-436202 1.0000 100 chrXVI:519994-520545 1.0000 100 chrXVI:559973-560465 1.0000 100 chrXVI:572027-572536 1.0000 100 chrXVI:581845-582433 1.0000 100 chrXVI:622276-622892 1.0000 100 chrXVI:689338-689867 1.0000 100 chrXVI:699859-700686 1.0000 100 chrXVI:701868-702385 1.0000 100 chrXVI:718454-719389 1.0000 100 chrXVI:731635-732318 1.0000 100 chrXVI:744076-744573 1.0000 100 chrXVI:768970-769481 1.0000 100 chrXVI:775612-776152 1.0000 100 chrXVI:794434-796201 1.0000 100 chrXVI:810577-811421 1.0000 100 chrXVI:819139-820022 1.0000 100 chrXVI:856796-857135 1.0000 100 chrXVI:860129-860706 1.0000 100 chrXVI:866482-866739 1.0000 100 chrXVI:880057-880565 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HIR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HIR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HIR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 486 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 48600 N= 486 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HIR1/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF RGRTCVSSGGTTCGAWYCYSSBHKNGRKCR MEME-1 width = 30 sites = 88 llr = 1594 E-value = 1.8e-317 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGRTCVSSGGTTCGAWYCYSSBHKNGRKCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5232:3112::1:2a3::::2:31214125 pos.-specific C 22117443::::9::14a65333122128: probability G 3652:2357a:::8:1:::354:53545:4 matrix T ::153:21::a91::56:31:333321311 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 ** * * * Relative 1.4 * ****** * Entropy 1.2 * ******* * * (26.1 bits) 1.0 * ******* **** * 0.7 * * ******* **** * 0.5 *** *********** ****** * *** 0.2 *************** ******** ***** 0.0 ------------------------------ Multilevel AGGTCCCGGGTTCGATTCCCGGAGGGGGCA consensus GCA TAGCA A AC TGCTCTT AT G sequence GT CT A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCVSSGGTTCGAWYCYSSBHKNGRKCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:1256930-1257085 - 51 6.52e-14 TCCCAAGCAT GGGGCCCGGGTTCGATTCCCGGCTTCCGCA TTTTTTGTGC chrXVI:860129-860706 + 53 1.00e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGCA GATTTTATTT chrVII:845351-846002 + 64 1.00e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGCA ATGTTTT chrIV:83337-83814 + 64 1.00e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGCA AGTTTAA chrIII:142406-142985 - 56 1.00e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGCA TCTTTTTTAC chrXVI:880057-880565 - 35 5.00e-12 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACCA TTTCTTTTTT chrXVI:819139-820022 + 43 5.00e-12 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACCA TTTATTTTTG chrXII:1051940-1052224 - 39 5.00e-12 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACCA TTATTTTTTT chrVII:738773-739589 + 35 5.00e-12 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACCA TTTACTTTTT chrV:550937-551615 - 59 5.00e-12 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACCA ATTTTTTTGA chrV:443064-443342 - 49 5.00e-12 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACCA TATTTTTTTT chrIX:183280-183692 - 4 5.00e-12 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACCA CTT chrIII:123380-123834 - 20 5.00e-12 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCGGCTCGCCCC ACATTGTTTT chrVIII:475514-475917 - 41 8.13e-12 CACACGGCAA AGGTCCCGAGTTCGATCCTCGGTTGGAACA TTTTAACATC chrII:326457-327167 - 30 9.52e-12 TACACGGCGA AGATCCCGAGTTCGAACCTCGGTTGGATCA AACTCTTTAT chrXII:214711-215069 - 43 1.77e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGGTTGCGTCCA TTTATTTTTT chrXIV:95998-96466 - 59 4.26e-11 TTCCAAGGTG GGGACACGGGTTCGATTCTCGTACCGCTCA AATTTTTTGA chrXIII:572667-573183 - 8 7.44e-11 CATAATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGCA CATTTTT chrX:422698-423288 + 37 7.44e-11 CATAATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGCA CATTTTCTTT chrXIII:586407-586903 - 31 8.53e-11 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTTTGAA chrXIII:420327-420856 - 47 8.53e-11 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTATCTC chrXIII:372198-372773 - 10 8.53e-11 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTTTAG chrXI:379484-379933 + 66 8.53e-11 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATCA ATTAA chrVII:823349-823698 + 53 8.53e-11 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTTGAAG chrV:438497-439037 + 27 8.53e-11 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATCA ATTTTTTTTT chrXVI:581845-582433 + 16 1.27e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGCT TTCTTTTTTA chrXIII:480357-480907 - 39 1.27e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGCT TCTTTTTTTG chrX:414751-415312 + 28 1.27e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGCT AATATTTTTT chrIV:884284-884721 + 12 1.65e-10 AGCAACGCGA CCGTCGTGGGTTCAAACCCCACCTCGAGCA CTTTCTCTTT chrVIII:466902-467258 + 2 2.75e-10 A AGGTCGCTAGTTCAATTCTGGCAGGTGGCA TTATACCGGT chrVIII:134075-134609 + 71 2.75e-10 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACCT chrIV:802584-802845 - 67 2.75e-10 CCGG ACAACCCCGGTTCGAATCCGGGTAGGACCT CTTTTTATTT chrIII:168103-168552 - 24 2.75e-10 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACCT TTTTTTGAAT chrXIII:290597-291143 + 23 5.07e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGAG TTTTCTTTTT chrV:354795-355213 + 22 5.07e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGAG TACTTTTTTG chrV:176850-177467 + 33 5.07e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGAG TACTTTTTTG chrV:130787-131387 - 45 8.11e-10 TTTGATCCGA ACAACCCCGGTTCGAATCCGGGTAAGACCT ATTTTTTTCC chrXIV:632491-632888 + 4 9.10e-10 GCA AGATCGTGAGTTCAACCCTCACTGGGGTCG TTTTTTTTCT chrVII:730953-731460 + 25 9.10e-10 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTCG TTTTTTGCTT chrVI:137231-137778 - 32 9.10e-10 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTCG TTTTTTTATT chrXV:464279-464791 + 37 1.14e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCAGCTCGCCCC TTTTATTTTT chrXV:353805-354307 - 35 1.28e-09 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGCA TTTTTTGTCG chrXIII:131565-132104 - 41 1.28e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrX:374210-374855 - 24 1.28e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrVII:828445-828978 - 62 1.28e-09 CTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGTG CTTTTTTTGC chrVII:736190-736672 + 1 1.28e-09 . AGATTATGGGTTCGACCCCCATCGTGAGTG TTGTTTTTTT chrIX:325549-326075 + 29 1.28e-09 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGCA ATTTTTTTTC chrII:405661-406209 + 35 1.28e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrXIII:463427-463857 + 4 2.46e-09 TGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTTAT chrXII:426891-427441 + 58 2.46e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG AATTTTTTTA chrXI:513125-513518 - 61 2.46e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTATT chrX:355207-355752 + 69 2.46e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG AT chrX:204490-205036 + 64 2.46e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTT chrIX:336102-336654 - 21 2.46e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTTAC chrIV:568693-569380 + 20 2.46e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG AATTTTTTTT chrXVI:768970-769481 - 32 3.03e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCTATGAGGAG TTCTTTACTT chrXVI:856796-857135 + 30 3.36e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCCA TTTTAATTTT chrVII:774136-774677 + 36 3.36e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCCA AATTTTTTTA chrXVI:744076-744573 + 52 4.13e-09 TGTAATGCAA AGGTCGTTAGTTCAATTCTGACAGGTGGCA AAATTTTTTC chrXIII:362939-363336 + 19 8.27e-09 TGTGGCCGAT GAAACCCTGGTTCGATTCTAGGAGATGGCA TTTTCTTTTT chrXI:312791-314022 - 45 8.27e-09 TGTGGCCGAT GAAACCCTGGTTCGATTCTAGGAGATGGCA TTTTATTTTT chrXII:374197-374689 + 5 1.10e-08 CAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAAG ATTTTTTTGC chrXI:490752-491353 + 9 1.10e-08 GAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAAG AATTTTTTTA chrIV:619742-620249 - 24 1.10e-08 ACGAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAAG ATTTTTTATA chrXIII:258866-259511 - 20 1.21e-08 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTGCAGTTGTCG TTATTTTTTG chrIV:437541-438104 + 52 1.21e-08 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTGCAGTTGTCG TCATTTTTAT chrII:226971-227342 + 21 1.21e-08 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTGCAGTTGTCG TTATTTTTTG chrXVI:689338-689867 + 65 1.46e-08 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTGCTGGTGTCG TATTAT chrV:288165-288795 - 13 1.46e-08 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTGCTGGTGTCG TTTTTTTTAT chrXVI:622276-622892 - 6 4.54e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACAGAATTCGCA TTTAT chrXVI:559973-560465 - 29 4.54e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACAGAATTCGCA TTTCTATTTT chrVII:440524-441000 - 4 4.54e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACAGAATTCGCA TAA chrXV:274495-274995 + 49 4.94e-08 TTGGGTTTTA CCTGCGCAGGTTCGAATCCTGTCTGTGACG CATTTCTTTT chrXIV:725929-726363 - 38 8.02e-08 TGGACGGTTG TCCGCGCGAGTTCGAACCTCGCATCCTTCA GTATTTTTTT chrIV:519652-519910 + 66 8.02e-08 TGGACGGTTG TCCGCGCGAGTTCGAACCTCGCATCCTTCA ATAAC chrII:347402-347951 + 31 8.02e-08 TGGACGGTTG TCCGCGCGAGTTCGAACCTCGCATCCTTCA GTAATATTTT chrII:9455-9906 + 7 8.02e-08 CGGTTG TCCGCGCGAGTTCGAACCTCGCATCCTTCA GTATTTTTTT chrXII:732008-732314 + 50 1.09e-07 GATATCTTCG GATGCAAGGGTTCGAATCCCTTAGCTCTCA TTATTTTTTG chrXII:592355-592719 - 32 1.09e-07 GATATCTTCG GATGCAAGGGTTCGAATCCCTTAGCTCTCA TTATTTTTTG chrXIV:546533-547700 + 36 1.59e-07 TCGGGCGTGT GGTCTAGTGGTATGATTCTCGCTTTGGGCG ACTTCCTGCC chrXIII:195936-196309 - 61 1.59e-07 AAGGGCGTGT GGTCTAGTGGTATGATTCTCGCTTTGGGCG ACTTCCTGAT chrXII:92408-92726 + 39 1.59e-07 AAGGGCGTGT GGTCTAGTGGTATGATTCTCGCTTTGGGCG ACTTCCTGAC chrVIII:388685-389212 - 60 1.59e-07 ATGGGCGTGT GGTCTAGTGGTATGATTCTCGCTTTGGGCG ACTTCCTGCC chrI:138946-139367 + 54 1.59e-07 ACGGGCGTGT GGTCTAGTGGTATGATTCTCGCTTTGGGCG ACTTCCTGAT chrXII:628169-628854 + 7 5.19e-07 TCGTAA GATGCAAGAGTTCGAATCTCTTAGCAACCA TTATTTTTGC chrIII:90779-91092 + 58 5.19e-07 GGTATCGTAA GATGCAAGAGTTCGAATCTCTTAGCAACCA TTATTTTTTT chrX:354161-354541 + 2 9.74e-07 G AGATCGGGCGTTCGACTCGCCCCCGGGAGA TTTTTTTAAT chrIII:149726-150202 + 48 1.65e-06 CATAACCCTG ATGTCCTCGGATCGAAACCGAGCGGCGCTA TTAAATTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCVSSGGTTCGAWYCYSSBHKNGRKCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1256930-1257085 6.5e-14 50_[-1]_20 chrXVI:860129-860706 1e-13 52_[+1]_18 chrVII:845351-846002 1e-13 63_[+1]_7 chrIV:83337-83814 1e-13 63_[+1]_7 chrIII:142406-142985 1e-13 55_[-1]_15 chrXVI:880057-880565 5e-12 34_[-1]_36 chrXVI:819139-820022 5e-12 42_[+1]_28 chrXII:1051940-1052224 5e-12 38_[-1]_32 chrVII:738773-739589 5e-12 34_[+1]_36 chrV:550937-551615 5e-12 58_[-1]_12 chrV:443064-443342 5e-12 48_[-1]_22 chrIX:183280-183692 5e-12 3_[-1]_67 chrIII:123380-123834 5e-12 19_[-1]_51 chrVIII:475514-475917 8.1e-12 40_[-1]_30 chrII:326457-327167 9.5e-12 29_[-1]_41 chrXII:214711-215069 1.8e-11 42_[-1]_28 chrXIV:95998-96466 4.3e-11 58_[-1]_12 chrXIII:572667-573183 7.4e-11 7_[-1]_63 chrX:422698-423288 7.4e-11 36_[+1]_34 chrXIII:586407-586903 8.5e-11 30_[-1]_40 chrXIII:420327-420856 8.5e-11 46_[-1]_24 chrXIII:372198-372773 8.5e-11 9_[-1]_61 chrXI:379484-379933 8.5e-11 65_[+1]_5 chrVII:823349-823698 8.5e-11 52_[+1]_18 chrV:438497-439037 8.5e-11 26_[+1]_44 chrXVI:581845-582433 1.3e-10 15_[+1]_55 chrXIII:480357-480907 1.3e-10 38_[-1]_32 chrX:414751-415312 1.3e-10 27_[+1]_43 chrIV:884284-884721 1.7e-10 11_[+1]_59 chrVIII:466902-467258 2.8e-10 1_[+1]_69 chrVIII:134075-134609 2.8e-10 70_[+1] chrIV:802584-802845 2.8e-10 66_[-1]_4 chrIII:168103-168552 2.8e-10 23_[-1]_47 chrXIII:290597-291143 5.1e-10 22_[+1]_48 chrV:354795-355213 5.1e-10 21_[+1]_49 chrV:176850-177467 5.1e-10 32_[+1]_38 chrV:130787-131387 8.1e-10 44_[-1]_26 chrXIV:632491-632888 9.1e-10 3_[+1]_67 chrVII:730953-731460 9.1e-10 24_[+1]_46 chrVI:137231-137778 9.1e-10 31_[-1]_39 chrXV:464279-464791 1.1e-09 36_[+1]_34 chrXV:353805-354307 1.3e-09 34_[-1]_36 chrXIII:131565-132104 1.3e-09 40_[-1]_30 chrX:374210-374855 1.3e-09 23_[-1]_47 chrVII:828445-828978 1.3e-09 61_[-1]_9 chrVII:736190-736672 1.3e-09 [+1]_70 chrIX:325549-326075 1.3e-09 28_[+1]_42 chrII:405661-406209 1.3e-09 34_[+1]_36 chrXIII:463427-463857 2.5e-09 3_[+1]_67 chrXII:426891-427441 2.5e-09 57_[+1]_13 chrXI:513125-513518 2.5e-09 60_[-1]_10 chrX:355207-355752 2.5e-09 68_[+1]_2 chrX:204490-205036 2.5e-09 63_[+1]_7 chrIX:336102-336654 2.5e-09 20_[-1]_50 chrIV:568693-569380 2.5e-09 19_[+1]_51 chrXVI:768970-769481 3e-09 31_[-1]_39 chrXVI:856796-857135 3.4e-09 29_[+1]_41 chrVII:774136-774677 3.4e-09 35_[+1]_35 chrXVI:744076-744573 4.1e-09 51_[+1]_19 chrXIII:362939-363336 8.3e-09 18_[+1]_52 chrXI:312791-314022 8.3e-09 44_[-1]_26 chrXII:374197-374689 1.1e-08 4_[+1]_66 chrXI:490752-491353 1.1e-08 8_[+1]_62 chrIV:619742-620249 1.1e-08 23_[-1]_47 chrXIII:258866-259511 1.2e-08 19_[-1]_51 chrIV:437541-438104 1.2e-08 51_[+1]_19 chrII:226971-227342 1.2e-08 20_[+1]_50 chrXVI:689338-689867 1.5e-08 64_[+1]_6 chrV:288165-288795 1.5e-08 12_[-1]_58 chrXVI:622276-622892 4.5e-08 5_[-1]_65 chrXVI:559973-560465 4.5e-08 28_[-1]_42 chrVII:440524-441000 4.5e-08 3_[-1]_67 chrXV:274495-274995 4.9e-08 48_[+1]_22 chrXIV:725929-726363 8e-08 37_[-1]_33 chrIV:519652-519910 8e-08 65_[+1]_5 chrII:347402-347951 8e-08 30_[+1]_40 chrII:9455-9906 8e-08 6_[+1]_64 chrXII:732008-732314 1.1e-07 49_[+1]_21 chrXII:592355-592719 1.1e-07 31_[-1]_39 chrXIV:546533-547700 1.6e-07 35_[+1]_35 chrXIII:195936-196309 1.6e-07 60_[-1]_10 chrXII:92408-92726 1.6e-07 38_[+1]_32 chrVIII:388685-389212 1.6e-07 59_[-1]_11 chrI:138946-139367 1.6e-07 53_[+1]_17 chrXII:628169-628854 5.2e-07 6_[+1]_64 chrIII:90779-91092 5.2e-07 57_[+1]_13 chrX:354161-354541 9.7e-07 1_[+1]_69 chrIII:149726-150202 1.7e-06 47_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCVSSGGTTCGAWYCYSSBHKNGRKCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGRTCVSSGGTTCGAWYCYSSBHKNGRKCR width=30 seqs=88 chrIV:1256930-1257085 ( 51) GGGGCCCGGGTTCGATTCCCGGCTTCCGCA 1 chrXVI:860129-860706 ( 53) GGGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrVII:845351-846002 ( 64) GGGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrIV:83337-83814 ( 64) GGGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrIII:142406-142985 ( 56) GGGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrXVI:880057-880565 ( 35) GGATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrXVI:819139-820022 ( 43) GGATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrXII:1051940-1052224 ( 39) GGATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrVII:738773-739589 ( 35) GGATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrV:550937-551615 ( 59) GGATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrV:443064-443342 ( 49) GGATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrIX:183280-183692 ( 4) GGATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrIII:123380-123834 ( 20) AGGTCCCGGGTTCGAGTCCCGGCTCGCCCC 1 chrVIII:475514-475917 ( 41) AGGTCCCGAGTTCGATCCTCGGTTGGAACA 1 chrII:326457-327167 ( 30) AGATCCCGAGTTCGAACCTCGGTTGGATCA 1 chrXII:214711-215069 ( 43) AGGTCATCGGTTCGATTCCGGTTGCGTCCA 1 chrXIV:95998-96466 ( 59) GGGACACGGGTTCGATTCTCGTACCGCTCA 1 chrXIII:572667-573183 ( 8) AGGTCGAGAGTTCGAACCTCCCCTGGAGCA 1 chrX:422698-423288 ( 37) AGGTCGAGAGTTCGAACCTCCCCTGGAGCA 1 chrXIII:586407-586903 ( 31) ACGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXIII:420327-420856 ( 47) ACGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXIII:372198-372773 ( 10) ACGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXI:379484-379933 ( 66) ACGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrVII:823349-823698 ( 53) ACGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrV:438497-439037 ( 27) ACGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXVI:581845-582433 ( 16) AGGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrXIII:480357-480907 ( 39) AGGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrX:414751-415312 ( 28) AGGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrIV:884284-884721 ( 12) CCGTCGTGGGTTCAAACCCCACCTCGAGCA 1 chrVIII:466902-467258 ( 2) AGGTCGCTAGTTCAATTCTGGCAGGTGGCA 1 chrVIII:134075-134609 ( 71) ACAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrIV:802584-802845 ( 67) ACAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrIII:168103-168552 ( 24) ACAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrXIII:290597-291143 ( 23) GAGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrV:354795-355213 ( 22) GAGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrV:176850-177467 ( 33) GAGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrV:130787-131387 ( 45) ACAACCCCGGTTCGAATCCGGGTAAGACCT 1 chrXIV:632491-632888 ( 4) AGATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrVII:730953-731460 ( 25) AGATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrVI:137231-137778 ( 32) AGATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrXV:464279-464791 ( 37) AGGCCCTGGGTTCAATTCCCAGCTCGCCCC 1 chrXV:353805-354307 ( 35) AGATCATCGGTTCAAATCCGATTGGAAGCA 1 chrXIII:131565-132104 ( 41) AGATTATGGGTTCGACCCCCATCGTGAGTG 1 chrX:374210-374855 ( 24) AGATTATGGGTTCGACCCCCATCGTGAGTG 1 chrVII:828445-828978 ( 62) AGATTATGGGTTCGACCCCCATCGTGAGTG 1 chrVII:736190-736672 ( 1) AGATTATGGGTTCGACCCCCATCGTGAGTG 1 chrIX:325549-326075 ( 29) AGATCATCGGTTCAAATCCGATTGGAAGCA 1 chrII:405661-406209 ( 35) AGATTATGGGTTCGACCCCCATCGTGAGTG 1 chrXIII:463427-463857 ( 4) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrXII:426891-427441 ( 58) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrXI:513125-513518 ( 61) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrX:355207-355752 ( 69) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrX:204490-205036 ( 64) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrIX:336102-336654 ( 21) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrIV:568693-569380 ( 20) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrXVI:768970-769481 ( 32) ATGTCAGGGGTTCGAGCCCCCTATGAGGAG 1 chrXVI:856796-857135 ( 30) AGGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrVII:774136-774677 ( 36) AGGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrXVI:744076-744573 ( 52) AGGTCGTTAGTTCAATTCTGACAGGTGGCA 1 chrXIII:362939-363336 ( 19) GAAACCCTGGTTCGATTCTAGGAGATGGCA 1 chrXI:312791-314022 ( 45) GAAACCCTGGTTCGATTCTAGGAGATGGCA 1 chrXII:374197-374689 ( 5) AGATTCCAGGTTCAAGTCCTGGCGGGGAAG 1 chrXI:490752-491353 ( 9) AGATTCCAGGTTCAAGTCCTGGCGGGGAAG 1 chrIV:619742-620249 ( 24) AGATTCCAGGTTCAAGTCCTGGCGGGGAAG 1 chrXIII:258866-259511 ( 20) CCCGCGCAGGTTCGAGTCCTGCAGTTGTCG 1 chrIV:437541-438104 ( 52) CCCGCGCAGGTTCGAGTCCTGCAGTTGTCG 1 chrII:226971-227342 ( 21) CCCGCGCAGGTTCGAGTCCTGCAGTTGTCG 1 chrXVI:689338-689867 ( 65) CCCGCGCTGGTTCAAATCCTGCTGGTGTCG 1 chrV:288165-288795 ( 13) CCCGCGCTGGTTCAAATCCTGCTGGTGTCG 1 chrXVI:622276-622892 ( 6) AGGTCCTGTGTTCGATCCACAGAATTCGCA 1 chrXVI:559973-560465 ( 29) AGGTCCTGTGTTCGATCCACAGAATTCGCA 1 chrVII:440524-441000 ( 4) AGGTCCTGTGTTCGATCCACAGAATTCGCA 1 chrXV:274495-274995 ( 49) CCTGCGCAGGTTCGAATCCTGTCTGTGACG 1 chrXIV:725929-726363 ( 38) TCCGCGCGAGTTCGAACCTCGCATCCTTCA 1 chrIV:519652-519910 ( 66) TCCGCGCGAGTTCGAACCTCGCATCCTTCA 1 chrII:347402-347951 ( 31) TCCGCGCGAGTTCGAACCTCGCATCCTTCA 1 chrII:9455-9906 ( 7) TCCGCGCGAGTTCGAACCTCGCATCCTTCA 1 chrXII:732008-732314 ( 50) GATGCAAGGGTTCGAATCCCTTAGCTCTCA 1 chrXII:592355-592719 ( 32) GATGCAAGGGTTCGAATCCCTTAGCTCTCA 1 chrXIV:546533-547700 ( 36) GGTCTAGTGGTATGATTCTCGCTTTGGGCG 1 chrXIII:195936-196309 ( 61) GGTCTAGTGGTATGATTCTCGCTTTGGGCG 1 chrXII:92408-92726 ( 39) GGTCTAGTGGTATGATTCTCGCTTTGGGCG 1 chrVIII:388685-389212 ( 60) GGTCTAGTGGTATGATTCTCGCTTTGGGCG 1 chrI:138946-139367 ( 54) GGTCTAGTGGTATGATTCTCGCTTTGGGCG 1 chrXII:628169-628854 ( 7) GATGCAAGAGTTCGAATCTCTTAGCAACCA 1 chrIII:90779-91092 ( 58) GATGCAAGAGTTCGAATCTCTTAGCAACCA 1 chrX:354161-354541 ( 2) AGATCGGGCGTTCGACTCGCCCCCGGGAGA 1 chrIII:149726-150202 ( 48) ATGTCCTCGGATCGAAACCGAGCGGCGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCVSSGGTTCGAWYCYSSBHKNGRKCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 34506 bayes= 9.63979 E= 1.8e-317 65 -25 70 -277 -77 34 156 -377 3 -89 130 -145 -69 -73 -15 75 -1310 197 -1310 -25 8 119 19 -377 -219 115 70 -60 -197 70 137 -131 -38 -405 192 -319 -1310 -1310 240 -1310 -477 -1310 -1310 167 -245 -1310 -1310 160 -1310 232 -1310 -245 -38 -1310 201 -1310 169 -1310 -1310 -1310 -31 -47 -60 65 -477 115 -1310 87 -1310 240 -1310 -1310 -319 172 -405 8 -377 153 80 -160 -69 53 137 -277 -377 47 119 -13 13 80 -1310 8 -145 -47 130 -13 -53 -15 85 -19 -131 -6 147 -87 18 -36 115 -197 -219 19 130 -31 -97 201 -405 -219 75 -306 99 -197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCVSSGGTTCGAWYCYSSBHKNGRKCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 88 E= 1.8e-317 0.488636 0.159091 0.306818 0.045455 0.181818 0.238636 0.556818 0.022727 0.318182 0.102273 0.465909 0.113636 0.193182 0.113636 0.170455 0.522727 0.000000 0.738636 0.000000 0.261364 0.329545 0.431818 0.215909 0.022727 0.068182 0.420455 0.306818 0.204545 0.079545 0.306818 0.488636 0.125000 0.238636 0.011364 0.715909 0.034091 0.000000 0.000000 1.000000 0.000000 0.011364 0.000000 0.000000 0.988636 0.056818 0.000000 0.000000 0.943182 0.000000 0.943182 0.000000 0.056818 0.238636 0.000000 0.761364 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.136364 0.125000 0.488636 0.011364 0.420455 0.000000 0.568182 0.000000 1.000000 0.000000 0.000000 0.034091 0.625000 0.011364 0.329545 0.022727 0.545455 0.329545 0.102273 0.193182 0.272727 0.488636 0.045455 0.022727 0.261364 0.431818 0.284091 0.340909 0.329545 0.000000 0.329545 0.113636 0.136364 0.465909 0.284091 0.215909 0.170455 0.340909 0.272727 0.125000 0.181818 0.522727 0.170455 0.352273 0.147727 0.420455 0.079545 0.068182 0.215909 0.465909 0.250000 0.159091 0.761364 0.011364 0.068182 0.522727 0.022727 0.375000 0.079545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCVSSGGTTCGAWYCYSSBHKNGRKCR MEME-1 regular expression -------------------------------------------------------------------------------- [AG][GC][GA]T[CT][CAG][CGT][GC][GA]GTTC[GA]A[TA][TC]C[CT][CG][GC][GTC][ACT][GT][GTA]G[GA][GTC]C[AG] -------------------------------------------------------------------------------- Time 222.43 secs. ******************************************************************************** ******************************************************************************** MOTIF VSCYTWAMCCACTVRGCCAM MEME-2 width = 20 sites = 80 llr = 1131 E-value = 1.8e-165 ******************************************************************************** -------------------------------------------------------------------------------- Motif VSCYTWAMCCACTVRGCCAM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 21111365:3a::332::a4 pos.-specific C 44732115a6:8:22:a8:4 probability G 45211:1::2:::358:::: matrix T ::14653::::2a1:::3:2 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * *** * * Relative 1.4 * *** **** Entropy 1.2 * *** **** (20.4 bits) 1.0 * * *** **** 0.7 *** ****** ***** 0.5 *** ****** ****** 0.2 ******************** 0.0 -------------------- Multilevel CGCTTTAACCACTGGGCCAC consensus GC CCATC A AAA T A sequence A CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCYTWAMCCACTVRGCCAM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrIV:1150679-1151194 + 30 7.13e-12 TAGCAGGCAT CGCCTTAACCACTCGGCCAC TGGGACTGAA chrXIII:258866-259511 + 76 4.48e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGC chrXII:167756-168268 + 38 4.48e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAT chrVIII:132800-133371 + 47 4.48e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCACTT chrIV:1305412-1305898 - 31 4.48e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCTTAA chrIV:437541-438104 - 6 4.48e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGC chrX:617679-618247 - 12 2.09e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAA ACTCCCATTG chrXVI:689338-689867 - 19 2.61e-10 TCAAGTCTGT CGCCTTAACCACTCGGCCAT AGTGCCCAAA chrV:288165-288795 + 69 2.61e-10 TCAAGTCTGT CGCCTTAACCACTCGGCCAT AGTGCCTATC chrIII:227755-228210 - 16 2.61e-10 TCGAGTCTCT CGCCTTAACCACTCGGCCAT AGTGCCATTT chrXVI:819139-820022 - 5 3.99e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGA chrXIV:602071-602576 - 45 3.99e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCATTG chrXII:734601-734986 - 65 3.99e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAAAC chrIX:183280-183692 + 52 3.99e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAGGA chrII:197166-197838 - 48 3.99e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCTTGA chrXII:962806-963281 + 37 2.27e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCGTCG chrXI:84009-84423 - 48 2.27e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCATAC chrX:424271-424720 + 45 2.27e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCATCT chrIV:519652-519910 - 18 2.27e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCGTAA chrXIII:321008-321433 + 24 6.13e-09 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCGATT chrXII:656831-657186 + 23 6.13e-09 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCAATT chrXI:517789-518192 - 54 6.13e-09 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCATAG chrX:58993-59372 + 15 6.13e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCTTCT chrXV:228071-228554 - 75 1.50e-08 TCGCAC GCCTTAACCAACTTGGCCAT GGAGTCTAAT chrXI:74425-74820 - 58 1.50e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCTAAT chrVI:137231-137778 + 80 1.50e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCAT G chrIII:127506-127896 - 71 1.50e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCATTT chrXII:605157-605625 + 66 1.73e-08 ATAAGCACGA AGCTCTAACCACTGAGCTAC ACGAGCATTT chrVII:115270-115735 - 42 2.59e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAA CAAGGATGAG chrX:233735-234123 - 66 3.37e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAACAAG chrIV:619742-620249 + 71 3.37e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAACAAG chrXIII:586407-586903 + 79 3.83e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GA chrXIII:372198-372773 + 58 3.83e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCAGGT chrXI:379484-379933 - 28 3.83e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTATT chrXI:307963-308491 + 15 3.83e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCACTT chrX:378119-378580 - 67 3.83e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTATT chrVII:823349-823698 - 15 3.83e-08 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCACTC chrVII:122019-122527 - 52 8.86e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTAAT chrIV:1351959-1353078 + 45 8.86e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTATT chrIV:1201524-1201972 - 58 8.86e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTATT chrIII:151117-151585 + 30 8.86e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTCTT chrXVI:622276-622892 + 72 1.38e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCATA chrXIV:374686-375086 - 39 1.38e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA GTCCGCTTAT chrVIII:358292-358802 + 47 1.38e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrVII:440524-441000 + 70 1.38e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCATAT chrIV:1095128-1095712 + 66 1.38e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA GTCCGCTAAC chrXVI:860129-860706 - 18 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTGT chrXVI:572027-572536 - 44 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCGAAG chrX:396546-397039 + 29 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTAC chrVII:930857-931163 + 38 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTAC chrVII:845351-846002 - 29 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTGT chrIV:83337-83814 - 29 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTAAG chrXIII:504645-505222 - 18 2.56e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAA ACAACCACTT chrXIII:572667-573183 + 55 7.02e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTAC TGAAGCTGTC chrXVI:744076-744573 - 16 8.30e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCTTTT chrX:745091-745749 - 76 8.30e-07 AATTA CCCATATCCAACTCCACTAC CATTACCCTA chrVII:1004029-1004415 - 50 8.30e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCAAAC chrVII:661515-661987 - 54 8.30e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCAAAT chrXIII:837700-838201 - 34 1.06e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCAA chrX:542765-543249 + 62 1.06e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTATT chrVI:210448-210932 + 42 1.06e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCGT chrVI:167196-167719 - 36 1.06e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCGT chrX:517647-518089 + 41 1.15e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTTAAC chrIII:149726-150202 - 12 1.15e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTCAAC chrII:326457-327167 + 78 1.15e-06 TAAAGGCGAC GTCTTGAACCACTGGACCAT TGG chrIII:316224-316596 - 60 1.24e-06 CCCACTCGTT ACCCTGCCCCACTCAACCAT ACCACTCCCA chrXVI:75345-77041 - 18 2.08e-06 AAAGCAAAAT GAACTGAACCACTAAGCCAA CAACAGAAAT chrXI:46629-47026 + 4 2.23e-06 GCG ATGCCTTACCACTTGGCCAA AAGGGCTGAG chrXI:302651-303227 - 35 2.74e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrX:415717-416285 + 60 2.74e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCAACT chrVII:878543-879118 + 10 2.74e-06 TGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrVII:287164-287684 + 56 2.74e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrXIII:747720-748191 + 33 5.81e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCTAGT chrX:374210-374855 + 70 5.81e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCTACT chrIV:835786-837941 - 64 5.81e-06 CACCTTGGTT AGCAGCGACGACCGGGCCAC TTGCAGAAGA chrXI:382170-382515 + 65 6.51e-06 CGTCAGTAAC CGTTCCACCCATTCCTCCAC GGTATGTAGA chrXIII:808089-808525 + 35 9.02e-06 CAGAACCGAA AGTGATAACCACTACACTAT AGGACCTTTT chrVIII:134075-134609 - 35 9.02e-06 CAAAACCGAA AGTGATAACCACTACACTAT AGGACCGGAA chrIII:168103-168552 + 70 9.02e-06 CAAAACCGAA AGTGATAACCACTACACTAT AGGACCAGGA chrII:350612-351054 - 50 9.02e-06 CAAAACCGAA AGTGATAACCACTACACTAT AAAACCCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCYTWAMCCACTVRGCCAM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1150679-1151194 7.1e-12 29_[+2]_51 chrXIII:258866-259511 4.5e-11 75_[+2]_5 chrXII:167756-168268 4.5e-11 37_[+2]_43 chrVIII:132800-133371 4.5e-11 46_[+2]_34 chrIV:1305412-1305898 4.5e-11 30_[-2]_50 chrIV:437541-438104 4.5e-11 5_[-2]_75 chrX:617679-618247 2.1e-10 11_[-2]_69 chrXVI:689338-689867 2.6e-10 18_[-2]_62 chrV:288165-288795 2.6e-10 68_[+2]_12 chrIII:227755-228210 2.6e-10 15_[-2]_65 chrXVI:819139-820022 4e-10 4_[-2]_76 chrXIV:602071-602576 4e-10 44_[-2]_36 chrXII:734601-734986 4e-10 64_[-2]_16 chrIX:183280-183692 4e-10 51_[+2]_29 chrII:197166-197838 4e-10 47_[-2]_33 chrXII:962806-963281 2.3e-09 36_[+2]_44 chrXI:84009-84423 2.3e-09 47_[-2]_33 chrX:424271-424720 2.3e-09 44_[+2]_36 chrIV:519652-519910 2.3e-09 17_[-2]_63 chrXIII:321008-321433 6.1e-09 23_[+2]_57 chrXII:656831-657186 6.1e-09 22_[+2]_58 chrXI:517789-518192 6.1e-09 53_[-2]_27 chrX:58993-59372 6.1e-09 14_[+2]_66 chrXV:228071-228554 1.5e-08 74_[-2]_6 chrXI:74425-74820 1.5e-08 57_[-2]_23 chrVI:137231-137778 1.5e-08 79_[+2]_1 chrIII:127506-127896 1.5e-08 70_[-2]_10 chrXII:605157-605625 1.7e-08 65_[+2]_15 chrVII:115270-115735 2.6e-08 41_[-2]_39 chrX:233735-234123 3.4e-08 65_[-2]_15 chrIV:619742-620249 3.4e-08 70_[+2]_10 chrXIII:586407-586903 3.8e-08 78_[+2]_2 chrXIII:372198-372773 3.8e-08 57_[+2]_23 chrXI:379484-379933 3.8e-08 27_[-2]_53 chrXI:307963-308491 3.8e-08 14_[+2]_66 chrX:378119-378580 3.8e-08 66_[-2]_14 chrVII:823349-823698 3.8e-08 14_[-2]_66 chrVII:122019-122527 8.9e-08 51_[-2]_29 chrIV:1351959-1353078 8.9e-08 44_[+2]_36 chrIV:1201524-1201972 8.9e-08 57_[-2]_23 chrIII:151117-151585 8.9e-08 29_[+2]_51 chrXVI:622276-622892 1.4e-07 71_[+2]_9 chrXIV:374686-375086 1.4e-07 38_[-2]_42 chrVIII:358292-358802 1.4e-07 46_[+2]_34 chrVII:440524-441000 1.4e-07 69_[+2]_11 chrIV:1095128-1095712 1.4e-07 65_[+2]_15 chrXVI:860129-860706 2.3e-07 17_[-2]_63 chrXVI:572027-572536 2.3e-07 43_[-2]_37 chrX:396546-397039 2.3e-07 28_[+2]_52 chrVII:930857-931163 2.3e-07 37_[+2]_43 chrVII:845351-846002 2.3e-07 28_[-2]_52 chrIV:83337-83814 2.3e-07 28_[-2]_52 chrXIII:504645-505222 2.6e-07 17_[-2]_63 chrXIII:572667-573183 7e-07 54_[+2]_26 chrXVI:744076-744573 8.3e-07 15_[-2]_65 chrX:745091-745749 8.3e-07 75_[-2]_5 chrVII:1004029-1004415 8.3e-07 49_[-2]_31 chrVII:661515-661987 8.3e-07 53_[-2]_27 chrXIII:837700-838201 1.1e-06 33_[-2]_47 chrX:542765-543249 1.1e-06 61_[+2]_19 chrVI:210448-210932 1.1e-06 41_[+2]_39 chrVI:167196-167719 1.1e-06 35_[-2]_45 chrX:517647-518089 1.1e-06 40_[+2]_40 chrIII:149726-150202 1.1e-06 11_[-2]_69 chrII:326457-327167 1.1e-06 77_[+2]_3 chrIII:316224-316596 1.2e-06 59_[-2]_21 chrXVI:75345-77041 2.1e-06 17_[-2]_63 chrXI:46629-47026 2.2e-06 3_[+2]_77 chrXI:302651-303227 2.7e-06 34_[-2]_46 chrX:415717-416285 2.7e-06 59_[+2]_21 chrVII:878543-879118 2.7e-06 9_[+2]_71 chrVII:287164-287684 2.7e-06 55_[+2]_25 chrXIII:747720-748191 5.8e-06 32_[+2]_48 chrX:374210-374855 5.8e-06 69_[+2]_11 chrIV:835786-837941 5.8e-06 63_[-2]_17 chrXI:382170-382515 6.5e-06 64_[+2]_16 chrXIII:808089-808525 9e-06 34_[+2]_46 chrVIII:134075-134609 9e-06 34_[-2]_46 chrIII:168103-168552 9e-06 69_[+2]_11 chrII:350612-351054 9e-06 49_[-2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCYTWAMCCACTVRGCCAM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VSCYTWAMCCACTVRGCCAM width=20 seqs=80 chrIV:1150679-1151194 ( 30) CGCCTTAACCACTCGGCCAC 1 chrXIII:258866-259511 ( 76) CGCCTTAACCACTCGGCCAA 1 chrXII:167756-168268 ( 38) CGCCTTAACCACTCGGCCAA 1 chrVIII:132800-133371 ( 47) CGCCTTAACCACTCGGCCAA 1 chrIV:1305412-1305898 ( 31) CGCCTTAACCACTCGGCCAA 1 chrIV:437541-438104 ( 6) CGCCTTAACCACTCGGCCAA 1 chrX:617679-618247 ( 12) GCCTTAAACCACTCGGCCAA 1 chrXVI:689338-689867 ( 19) CGCCTTAACCACTCGGCCAT 1 chrV:288165-288795 ( 69) CGCCTTAACCACTCGGCCAT 1 chrIII:227755-228210 ( 16) CGCCTTAACCACTCGGCCAT 1 chrXVI:819139-820022 ( 5) GCCTTAACCAACTGGGCCAA 1 chrXIV:602071-602576 ( 45) GCCTTAACCAACTGGGCCAA 1 chrXII:734601-734986 ( 65) GCCTTAACCAACTGGGCCAA 1 chrIX:183280-183692 ( 52) GCCTTAACCAACTGGGCCAA 1 chrII:197166-197838 ( 48) GCCTTAACCAACTGGGCCAA 1 chrXII:962806-963281 ( 37) GCCTTAGACCACTCGGCCAA 1 chrXI:84009-84423 ( 48) GCCTTAGACCACTCGGCCAA 1 chrX:424271-424720 ( 45) GCCTTAGACCACTCGGCCAA 1 chrIV:519652-519910 ( 18) GCCTTAGACCACTCGGCCAA 1 chrXIII:321008-321433 ( 24) CGCGCTACCGACTACGCCAC 1 chrXII:656831-657186 ( 23) CGCGCTACCGACTACGCCAC 1 chrXI:517789-518192 ( 54) CGCGCTACCGACTACGCCAC 1 chrX:58993-59372 ( 15) CGCCTTACCAACTTGGCCAT 1 chrXV:228071-228554 ( 75) GCCTTAACCAACTTGGCCAT 1 chrXI:74425-74820 ( 58) GCCTTAACCAACTTGGCCAT 1 chrVI:137231-137778 ( 80) GCCTTAACCAACTTGGCCAT 1 chrIII:127506-127896 ( 71) GCCTTAACCAACTTGGCCAT 1 chrXII:605157-605625 ( 66) AGCTCTAACCACTGAGCTAC 1 chrVII:115270-115735 ( 42) CGCTCTACCAACTGAGCTAA 1 chrX:233735-234123 ( 66) CGCCGTGACCATTGGGCCAC 1 chrIV:619742-620249 ( 71) CGCCGTGACCATTGGGCCAC 1 chrXIII:586407-586903 ( 79) GCCATAACCGACTAGACCAC 1 chrXIII:372198-372773 ( 58) GCCATAACCGACTAGACCAC 1 chrXI:379484-379933 ( 28) GCCATAACCGACTAGACCAC 1 chrXI:307963-308491 ( 15) GCCATAACCGACTAGACCAC 1 chrX:378119-378580 ( 67) GCCATAACCGACTAGACCAC 1 chrVII:823349-823698 ( 15) GCCATAACCGACTAGACCAC 1 chrVII:122019-122527 ( 52) CGCGCTACCGATTGCGCCAA 1 chrIV:1351959-1353078 ( 45) CGCGCTACCGATTGCGCCAA 1 chrIV:1201524-1201972 ( 58) CGCGCTACCGATTGCGCCAA 1 chrIII:151117-151585 ( 30) CGCGCTACCGATTGCGCCAA 1 chrXVI:622276-622892 ( 72) CGCTCTCCCAACTGAGCTAA 1 chrXIV:374686-375086 ( 39) CGCTCTCCCAACTGAGCTAA 1 chrVIII:358292-358802 ( 47) CGCTCTCCCAACTGAGCTAA 1 chrVII:440524-441000 ( 70) CGCTCTCCCAACTGAGCTAA 1 chrIV:1095128-1095712 ( 66) CGCTCTCCCAACTGAGCTAA 1 chrXVI:860129-860706 ( 18) GGATTTTACCACTAAACCAC 1 chrXVI:572027-572536 ( 44) GGATTTTACCACTAAACCAC 1 chrX:396546-397039 ( 29) GGATTTTACCACTAAACCAC 1 chrVII:930857-931163 ( 38) GGATTTTACCACTAAACCAC 1 chrVII:845351-846002 ( 29) GGATTTTACCACTAAACCAC 1 chrIV:83337-83814 ( 29) GGATTTTACCACTAAACCAC 1 chrXIII:504645-505222 ( 18) GCCTTAGACCGCTCGGCCAA 1 chrXIII:572667-573183 ( 55) CGCTCTTCCTACTGAGCTAC 1 chrXVI:744076-744573 ( 16) ACGCTCTACCACTAAGCTAA 1 chrX:745091-745749 ( 76) CCCATATCCAACTCCACTAC 1 chrVII:1004029-1004415 ( 50) ACGCTCTACCACTAAGCTAA 1 chrVII:661515-661987 ( 54) ACGCTCTACCACTAAGCTAA 1 chrXIII:837700-838201 ( 34) CCTTAAACCAACTTGGCTAC 1 chrX:542765-543249 ( 62) CCTTAAACCAACTTGGCTAC 1 chrVI:210448-210932 ( 42) CCTTAAACCAACTTGGCTAC 1 chrVI:167196-167719 ( 36) CCTTAAACCAACTTGGCTAC 1 chrX:517647-518089 ( 41) GCGCGCTTCCACTGCGCCAC 1 chrIII:149726-150202 ( 12) GCGCGCTTCCACTGCGCCAC 1 chrII:326457-327167 ( 78) GTCTTGAACCACTGGACCAT 1 chrIII:316224-316596 ( 60) ACCCTGCCCCACTCAACCAT 1 chrXVI:75345-77041 ( 18) GAACTGAACCACTAAGCCAA 1 chrXI:46629-47026 ( 4) ATGCCTTACCACTTGGCCAA 1 chrXI:302651-303227 ( 35) AAGCTCTACCATTGAGCCAC 1 chrX:415717-416285 ( 60) AAGCTCTACCATTGAGCCAC 1 chrVII:878543-879118 ( 10) AAGCTCTACCATTGAGCCAC 1 chrVII:287164-287684 ( 56) AAGCTCTACCATTGAGCCAC 1 chrXIII:747720-748191 ( 33) ACGCGTTGCCATTACGCCAC 1 chrX:374210-374855 ( 70) ACGCGTTGCCATTACGCCAC 1 chrIV:835786-837941 ( 64) AGCAGCGACGACCGGGCCAC 1 chrXI:382170-382515 ( 65) CGTTCCACCCATTCCTCCAC 1 chrXIII:808089-808525 ( 35) AGTGATAACCACTACACTAT 1 chrVIII:134075-134609 ( 35) AGTGATAACCACTACACTAT 1 chrIII:168103-168552 ( 70) AGTGATAACCACTACACTAT 1 chrII:350612-351054 ( 50) AGTGATAACCACTACACTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCYTWAMCCACTVRGCCAM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 39366 bayes= 9.19181 E= 1.8e-165 -55 108 103 -1297 -231 117 137 -363 -183 178 -33 -147 -164 78 -46 49 -164 17 -111 95 6 -46 -233 69 89 -133 -92 -31 65 129 -292 -363 -1297 240 -1297 -1297 -24 154 -11 -463 167 -1297 -392 -1297 -1297 215 -1297 -94 -1297 -392 -1297 167 1 25 84 -131 -11 17 140 -1297 -39 -1297 199 -463 -1297 240 -1297 -1297 -1297 199 -1297 -31 169 -1297 -1297 -1297 32 121 -1297 -83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCYTWAMCCACTVRGCCAM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 80 E= 1.8e-165 0.212500 0.400000 0.387500 0.000000 0.062500 0.425000 0.487500 0.025000 0.087500 0.650000 0.150000 0.112500 0.100000 0.325000 0.137500 0.437500 0.100000 0.212500 0.087500 0.600000 0.325000 0.137500 0.037500 0.500000 0.575000 0.075000 0.100000 0.250000 0.487500 0.462500 0.025000 0.025000 0.000000 1.000000 0.000000 0.000000 0.262500 0.550000 0.175000 0.012500 0.987500 0.000000 0.012500 0.000000 0.000000 0.837500 0.000000 0.162500 0.000000 0.012500 0.000000 0.987500 0.312500 0.225000 0.337500 0.125000 0.287500 0.212500 0.500000 0.000000 0.237500 0.000000 0.750000 0.012500 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.387500 0.437500 0.000000 0.175000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCYTWAMCCACTVRGCCAM MEME-2 regular expression -------------------------------------------------------------------------------- [CGA][GC]C[TC][TC][TA][AT][AC]C[CA]ACT[GAC][GAC][GA]C[CT]A[CA] -------------------------------------------------------------------------------- Time 424.21 secs. ******************************************************************************** ******************************************************************************** MOTIF THWMATCCGWKATAGTKTAAYGGYYAKMAY MEME-3 width = 30 sites = 14 llr = 412 E-value = 2.4e-063 ******************************************************************************** -------------------------------------------------------------------------------- Motif THWMATCCGWKATAGTKTAAYGGYYAKMAY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 14457::::4:9:a::::aa:::::a:6a: pos.-specific C :213::aa::::::::::::4::46::4:4 probability G 11::::::a:61::a:4::::aa:::6::: matrix T 83623a:::64:a::a6a::6::64:4::6 bits 2.4 *** * ** 2.2 *** * ** 1.9 *** * ** 1.7 **** **** *** ** * * Relative 1.4 **** **** *** ** * * Entropy 1.2 **** ****** *** ** *** * (42.4 bits) 1.0 **** ******************** 0.7 * ************************** 0.5 * **************************** 0.2 * **************************** 0.0 ------------------------------ Multilevel TATAATCCGTGATAGTTTAATGGTCAGAAT consensus TACT AT G C CT TC C sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THWMATCCGWKATAGTKTAAYGGYYAKMAY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXII:426891-427441 + 11 8.59e-15 TTCCAGTGTT TCTTATCCGTGATAGTTTAATGGTCAGAAT GGGCGCTTGT chrX:115753-116258 - 31 1.34e-14 ATTAACCGTT TATAATCCGATATAGTGTAACGGCTATCAC ATCACGCTTT chrIX:370256-370592 + 38 1.34e-14 AAATATAGAT TATAATCCGATATAGTGTAACGGCTATCAC ATCACGCTTT chrX:355207-355752 + 22 1.75e-14 GAGTGCTTTG TTTCTTCCGTGATAGTTTAATGGTCAGAAT GGGCGCTTGT chrVII:544410-544898 - 20 1.75e-14 TTCACAGATA TTTCTTCCGTGATAGTTTAATGGTCAGAAT GGGCGCTTGT chrII:405661-406209 + 70 1.75e-14 GAGTGCTTTG TTTCTTCCGTGATAGTTTAATGGTCAGAAT G chrVII:531399-531812 + 50 3.19e-14 AACACTCGAG TTACTTCCGTGATAGTTTAATGGTCAGAAT GGGCGCTTGT chrX:204490-205036 + 17 3.98e-14 AAAACAACAT AAAAATCCGTGATAGTTTAATGGTCAGAAT GGGCGCTTGT chrII:644937-645401 + 43 4.38e-14 AAACATAAGT TATTATCCGATATAGTGTAACGGCTATCAC ATCACGCTTT chrIX:336102-336654 - 68 4.84e-14 GAA ACAAATCCGTGATAGTTTAATGGTCAGAAT GGGCGCTTGT chrX:540713-542333 + 30 5.35e-14 TGTACAGAAA GAAAATCCGTGATAGTTTAATGGTCAGAAT GGGCGCTTGT chrIX:197335-197805 + 67 1.19e-13 ATCAAGCTAA TCAAATCCGATGTAGTGTAACGGCTATCAC ATCA chrIII:82455-82655 - 4 1.45e-13 TTTAATAATT TGTTATCCGATATAGTGTAACGGCTATCAC ATC chrIV:1016986-1017596 - 13 2.23e-13 ATCACCAAGG TACAATCCGATGTAGTGTAACGGCTATCAC ATCACGTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THWMATCCGWKATAGTKTAAYGGYYAKMAY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:426891-427441 8.6e-15 10_[+3]_60 chrX:115753-116258 1.3e-14 30_[-3]_40 chrIX:370256-370592 1.3e-14 37_[+3]_33 chrX:355207-355752 1.7e-14 21_[+3]_49 chrVII:544410-544898 1.7e-14 19_[-3]_51 chrII:405661-406209 1.7e-14 69_[+3]_1 chrVII:531399-531812 3.2e-14 49_[+3]_21 chrX:204490-205036 4e-14 16_[+3]_54 chrII:644937-645401 4.4e-14 42_[+3]_28 chrIX:336102-336654 4.8e-14 67_[-3]_3 chrX:540713-542333 5.4e-14 29_[+3]_41 chrIX:197335-197805 1.2e-13 66_[+3]_4 chrIII:82455-82655 1.4e-13 3_[-3]_67 chrIV:1016986-1017596 2.2e-13 12_[-3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THWMATCCGWKATAGTKTAAYGGYYAKMAY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF THWMATCCGWKATAGTKTAAYGGYYAKMAY width=30 seqs=14 chrXII:426891-427441 ( 11) TCTTATCCGTGATAGTTTAATGGTCAGAAT 1 chrX:115753-116258 ( 31) TATAATCCGATATAGTGTAACGGCTATCAC 1 chrIX:370256-370592 ( 38) TATAATCCGATATAGTGTAACGGCTATCAC 1 chrX:355207-355752 ( 22) TTTCTTCCGTGATAGTTTAATGGTCAGAAT 1 chrVII:544410-544898 ( 20) TTTCTTCCGTGATAGTTTAATGGTCAGAAT 1 chrII:405661-406209 ( 70) TTTCTTCCGTGATAGTTTAATGGTCAGAAT 1 chrVII:531399-531812 ( 50) TTACTTCCGTGATAGTTTAATGGTCAGAAT 1 chrX:204490-205036 ( 17) AAAAATCCGTGATAGTTTAATGGTCAGAAT 1 chrII:644937-645401 ( 43) TATTATCCGATATAGTGTAACGGCTATCAC 1 chrIX:336102-336654 ( 68) ACAAATCCGTGATAGTTTAATGGTCAGAAT 1 chrX:540713-542333 ( 30) GAAAATCCGTGATAGTTTAATGGTCAGAAT 1 chrIX:197335-197805 ( 67) TCAAATCCGATGTAGTGTAACGGCTATCAC 1 chrIII:82455-82655 ( 4) TGTTATCCGATATAGTGTAACGGCTATCAC 1 chrIV:1016986-1017596 ( 13) TACAATCCGATGTAGTGTAACGGCTATCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THWMATCCGWKATAGTKTAAYGGYYAKMAY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 34506 bayes= 11.1104 E= 2.4e-063 -112 -1045 -140 134 46 18 -140 -12 20 -140 -1045 88 69 60 -1045 -54 120 -1045 -1045 -12 -1045 -1045 -1045 168 -1045 240 -1045 -1045 -1045 240 -1045 -1045 -1045 -1045 240 -1045 46 -1045 -1045 88 -1045 -1045 159 46 146 -1045 -40 -1045 -1045 -1045 -1045 168 168 -1045 -1045 -1045 -1045 -1045 240 -1045 -1045 -1045 -1045 168 -1045 -1045 118 88 -1045 -1045 -1045 168 168 -1045 -1045 -1045 168 -1045 -1045 -1045 -1045 118 -1045 88 -1045 -1045 240 -1045 -1045 -1045 240 -1045 -1045 118 -1045 88 -1045 159 -1045 46 168 -1045 -1045 -1045 -1045 -1045 159 46 88 118 -1045 -1045 168 -1045 -1045 -1045 -1045 118 -1045 88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THWMATCCGWKATAGTKTAAYGGYYAKMAY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 14 E= 2.4e-063 0.142857 0.000000 0.071429 0.785714 0.428571 0.214286 0.071429 0.285714 0.357143 0.071429 0.000000 0.571429 0.500000 0.285714 0.000000 0.214286 0.714286 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.000000 0.000000 0.571429 0.000000 0.000000 0.571429 0.428571 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.571429 0.000000 0.428571 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.428571 0.571429 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THWMATCCGWKATAGTKTAAYGGYYAKMAY MEME-3 regular expression -------------------------------------------------------------------------------- T[ATC][TA][ACT][AT]TCCG[TA][GT]ATAGT[TG]TAA[TC]GG[TC][CT]A[GT][AC]A[TC] -------------------------------------------------------------------------------- Time 616.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71673-73731 4.57e-01 100 chrI:81925-82308 5.65e-01 100 chrI:138946-139367 1.07e-06 53_[+1(1.59e-07)]_17 chrI:166169-166874 8.66e-01 100 chrII:9455-9906 2.62e-04 6_[+1(8.02e-08)]_64 chrII:36242-36849 2.42e-01 100 chrII:44938-45388 6.25e-01 100 chrII:60665-61225 5.80e-01 100 chrII:88954-90328 1.07e-02 100 chrII:165081-165651 7.44e-01 100 chrII:167775-169537 1.58e-01 100 chrII:181333-181642 9.83e-01 100 chrII:197166-197838 2.97e-06 47_[-2(3.99e-10)]_33 chrII:226971-227342 9.92e-05 20_[+1(1.21e-08)]_50 chrII:234615-236000 7.34e-01 100 chrII:254677-257832 8.60e-01 100 chrII:266201-266791 7.21e-01 100 chrII:326457-327167 2.44e-11 29_[-1(9.52e-12)]_18_[+2(1.15e-06)]_\ 3 chrII:332286-333048 2.20e-01 100 chrII:347402-347951 4.32e-05 30_[+1(8.02e-08)]_40 chrII:350612-351054 1.52e-05 38_[+3(6.70e-06)]_32 chrII:405661-406209 2.79e-18 34_[+1(1.28e-09)]_5_[+3(1.75e-14)]_\ 1 chrII:415473-416129 9.34e-01 100 chrII:477031-477744 5.42e-01 100 chrII:592860-593298 8.80e-01 100 chrII:604080-607144 7.80e-01 100 chrII:642856-643084 9.98e-01 100 chrII:644937-645401 3.61e-10 42_[+3(4.38e-14)]_28 chrIII:63-1668 1.05e-01 100 chrIII:29556-31196 4.68e-01 100 chrIII:58736-58997 9.23e-01 100 chrIII:78122-78875 7.85e-01 100 chrIII:82455-82655 1.67e-09 3_[-3(1.45e-13)]_67 chrIII:90779-91092 2.97e-03 57_[+1(5.19e-07)]_13 chrIII:123380-123834 2.64e-09 19_[-1(5.00e-12)]_4_[-1(1.39e-06)]_\ 17 chrIII:127506-127896 6.49e-05 70_[-2(1.50e-08)]_10 chrIII:142406-142985 1.45e-09 55_[-1(1.00e-13)]_15 chrIII:149726-150202 6.99e-06 11_[-2(1.15e-06)]_16_[+1(1.65e-06)]_\ 23 chrIII:151117-151585 8.47e-05 29_[+2(8.86e-08)]_51 chrIII:162117-164282 9.33e-01 100 chrIII:168103-168552 4.25e-11 23_[-1(2.75e-10)]_16_[+2(9.02e-06)]_\ 11 chrIII:177149-178814 7.00e-01 100 chrIII:227755-228210 1.50e-06 15_[-2(2.61e-10)]_65 chrIII:295329-295945 9.99e-01 100 chrIII:308666-308985 2.13e-01 100 chrIII:316224-316596 8.46e-03 59_[-2(1.24e-06)]_21 chrIV:83337-83814 4.75e-14 28_[-2(2.32e-07)]_15_[+1(1.00e-13)]_\ 7 chrIV:117156-118208 9.01e-01 100 chrIV:129257-129466 3.67e-01 100 chrIV:129614-131136 8.99e-01 100 chrIV:217155-217719 9.35e-01 100 chrIV:221022-222373 6.04e-01 100 chrIV:229470-231393 3.31e-01 100 chrIV:306680-310191 3.26e-01 100 chrIV:321663-321964 9.39e-01 100 chrIV:322216-323633 7.17e-01 100 chrIV:340458-341672 3.63e-01 100 chrIV:357776-358641 9.64e-01 100 chrIV:359130-359780 6.07e-01 100 chrIV:410213-410830 6.10e-01 100 chrIV:411067-411668 9.68e-01 100 chrIV:434056-434971 9.74e-01 100 chrIV:437541-438104 6.59e-12 5_[-2(4.48e-11)]_26_[+1(1.21e-08)]_\ 19 chrIV:488464-488996 7.56e-01 100 chrIV:489644-491296 7.53e-01 100 chrIV:519652-519910 1.48e-09 17_[-2(2.27e-09)]_28_[+1(8.02e-08)]_\ 5 chrIV:520619-521175 2.32e-01 100 chrIV:538839-539564 9.86e-01 100 chrIV:541171-541925 8.38e-01 100 chrIV:555429-556640 1.42e-01 100 chrIV:568693-569380 1.42e-05 19_[+1(2.46e-09)]_51 chrIV:578999-580902 8.06e-01 100 chrIV:600617-601732 5.72e-02 100 chrIV:619742-620249 2.91e-09 23_[-1(1.10e-08)]_17_[+2(3.37e-08)]_\ 10 chrIV:667772-668575 2.03e-01 100 chrIV:802584-802845 5.22e-06 66_[-1(2.75e-10)]_4 chrIV:835786-837941 1.46e-02 63_[-2(5.81e-06)]_17 chrIV:884284-884721 2.81e-06 11_[+1(1.65e-10)]_59 chrIV:914023-916303 1.97e-01 100 chrIV:945770-946633 5.92e-01 100 chrIV:992678-993212 8.92e-01 100 chrIV:1013456-1014005 6.54e-01 100 chrIV:1016986-1017596 6.70e-11 12_[-3(2.23e-13)]_58 chrIV:1075306-1075742 3.85e-04 45_[-3(4.92e-05)]_25 chrIV:1095128-1095712 7.83e-05 65_[+2(1.38e-07)]_15 chrIV:1150679-1151194 8.46e-08 29_[+2(7.13e-12)]_51 chrIV:1175602-1176589 5.75e-01 100 chrIV:1201524-1201972 1.28e-05 57_[-2(8.86e-08)]_23 chrIV:1256930-1257085 2.79e-09 50_[-1(6.52e-14)]_20 chrIV:1300636-1301348 5.29e-01 100 chrIV:1305412-1305898 9.81e-07 30_[-2(4.48e-11)]_50 chrIV:1351959-1353078 3.66e-05 44_[+2(8.86e-08)]_36 chrIV:1354327-1356009 8.03e-01 100 chrIV:1359108-1361296 5.22e-01 100 chrIV:1401198-1401957 9.60e-01 100 chrIV:1450731-1451243 4.92e-01 100 chrIV:1461071-1461850 4.78e-01 100 chrIV:1488980-1489970 8.75e-01 100 chrIX:68196-69545 8.36e-01 100 chrIX:98261-100072 4.05e-01 100 chrIX:174687-175733 8.87e-01 100 chrIX:183280-183692 3.35e-14 3_[-1(5.00e-12)]_18_[+2(3.99e-10)]_\ 29 chrIX:197335-197805 5.87e-10 66_[+3(1.19e-13)]_4 chrIX:210657-210904 4.12e-01 100 chrIX:248608-249016 9.70e-01 100 chrIX:254198-254597 6.34e-01 100 chrIX:257358-258171 3.34e-01 100 chrIX:299850-300523 6.82e-01 100 chrIX:316099-318258 1.75e-01 100 chrIX:322457-324543 6.26e-01 100 chrIX:325549-326075 1.35e-05 28_[+1(1.28e-09)]_42 chrIX:336102-336654 1.38e-17 20_[-1(2.46e-09)]_17_[-3(4.84e-14)]_\ 3 chrIX:370256-370592 1.85e-10 37_[+3(1.34e-14)]_33 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2.11e-08 34_[-1(5.00e-12)]_36 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************