******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HAA1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:81891-82301 1.0000 100 chrI:109041-109600 1.0000 100 chrI:138751-139342 1.0000 100 chrI:166171-166985 1.0000 100 chrII:6795-7094 1.0000 100 chrII:9455-9862 1.0000 100 chrII:36233-36856 1.0000 100 chrII:44917-45365 1.0000 100 chrII:60840-61374 1.0000 100 chrII:89269-90014 1.0000 100 chrII:165099-165378 1.0000 100 chrII:167890-168196 1.0000 100 chrII:181313-181676 1.0000 100 chrII:197138-197842 1.0000 100 chrII:226972-227338 1.0000 100 chrII:266209-266735 1.0000 100 chrII:326479-327154 1.0000 100 chrII:332274-333056 1.0000 100 chrII:347407-347932 1.0000 100 chrII:350603-350979 1.0000 100 chrII:405655-406220 1.0000 100 chrII:415495-416186 1.0000 100 chrII:477033-477729 1.0000 100 chrII:478993-479567 1.0000 100 chrII:592883-593276 1.0000 100 chrII:604073-606093 1.0000 100 chrII:644958-645431 1.0000 100 chrII:680367-680666 1.0000 100 chrIII:131-1236 1.0000 100 chrIII:90782-91109 1.0000 100 chrIII:123439-123796 1.0000 100 chrIII:127533-127879 1.0000 100 chrIII:142418-143015 1.0000 100 chrIII:149710-150226 1.0000 100 chrIII:151138-151607 1.0000 100 chrIII:163447-163894 1.0000 100 chrIII:168030-168539 1.0000 100 chrIII:178089-178755 1.0000 100 chrIII:227753-228195 1.0000 100 chrIII:292794-293050 1.0000 100 chrIII:295344-295947 1.0000 100 chrIII:308566-308963 1.0000 100 chrIV:83283-84293 1.0000 100 chrIV:117149-118180 1.0000 100 chrIV:130101-131003 1.0000 100 chrIV:131217-131550 1.0000 100 chrIV:216885-218089 1.0000 100 chrIV:221610-222369 1.0000 100 chrIV:229457-229876 1.0000 100 chrIV:308015-308832 1.0000 100 chrIV:321623-321968 1.0000 100 chrIV:340551-341669 1.0000 100 chrIV:358054-358464 1.0000 100 chrIV:359166-359787 1.0000 100 chrIV:409929-410456 1.0000 100 chrIV:411216-411665 1.0000 100 chrIV:434051-435065 1.0000 100 chrIV:437536-438139 1.0000 100 chrIV:488419-488993 1.0000 100 chrIV:490511-491264 1.0000 100 chrIV:491425-492585 1.0000 100 chrIV:519655-519952 1.0000 100 chrIV:520111-520498 1.0000 100 chrIV:520663-521106 1.0000 100 chrIV:538874-539317 1.0000 100 chrIV:568711-569350 1.0000 100 chrIV:578959-580385 1.0000 100 chrIV:580577-580865 1.0000 100 chrIV:601225-601496 1.0000 100 chrIV:619699-620236 1.0000 100 chrIV:667722-668591 1.0000 100 chrIV:757476-758394 1.0000 100 chrIV:802577-802837 1.0000 100 chrIV:835872-837106 1.0000 100 chrIV:884268-885439 1.0000 100 chrIV:945775-946653 1.0000 100 chrIV:992677-993270 1.0000 100 chrIV:1013671-1013986 1.0000 100 chrIV:1016955-1017526 1.0000 100 chrIV:1062645-1063095 1.0000 100 chrIV:1075322-1076091 1.0000 100 chrIV:1095157-1095716 1.0000 100 chrIV:1150702-1151182 1.0000 100 chrIV:1175594-1176088 1.0000 100 chrIV:1201505-1201983 1.0000 100 chrIV:1258962-1259129 1.0000 100 chrIV:1259459-1259857 1.0000 100 chrIV:1300654-1301342 1.0000 100 chrIV:1305005-1305835 1.0000 100 chrIV:1351685-1353251 1.0000 100 chrIV:1355742-1356030 1.0000 100 chrIV:1359173-1360798 1.0000 100 chrIV:1400937-1401869 1.0000 100 chrIV:1450622-1451217 1.0000 100 chrIV:1461047-1461845 1.0000 100 chrIX:68060-68930 1.0000 100 chrIX:69161-69517 1.0000 100 chrIX:99632-100045 1.0000 100 chrIX:174703-175368 1.0000 100 chrIX:182752-183985 1.0000 100 chrIX:197348-198137 1.0000 100 chrIX:210666-211216 1.0000 100 chrIX:248538-249012 1.0000 100 chrIX:254205-254558 1.0000 100 chrIX:257359-258000 1.0000 100 chrIX:288046-288913 1.0000 100 chrIX:299995-300530 1.0000 100 chrIX:315868-317615 1.0000 100 chrIX:323971-324533 1.0000 100 chrIX:325534-326064 1.0000 100 chrIX:336096-336868 1.0000 100 chrIX:370249-370583 1.0000 100 chrIX:380167-380482 1.0000 100 chrIX:380662-380835 1.0000 100 chrV:6197-6793 1.0000 100 chrV:33791-34260 1.0000 100 chrV:53493-54313 1.0000 100 chrV:61088-62672 1.0000 100 chrV:85113-85447 1.0000 100 chrV:85769-86256 1.0000 100 chrV:86431-87004 1.0000 100 chrV:99859-100279 1.0000 100 chrV:117467-118302 1.0000 100 chrV:130833-131390 1.0000 100 chrV:135178-136172 1.0000 100 chrV:138484-139978 1.0000 100 chrV:140173-140912 1.0000 100 chrV:176873-177441 1.0000 100 chrV:207366-208085 1.0000 100 chrV:249387-250526 1.0000 100 chrV:270390-270974 1.0000 100 chrV:288142-288736 1.0000 100 chrV:305812-306909 1.0000 100 chrV:311740-312295 1.0000 100 chrV:354796-355342 1.0000 100 chrV:362046-362488 1.0000 100 chrV:396139-397921 1.0000 100 chrV:423086-424287 1.0000 100 chrV:431029-432044 1.0000 100 chrV:434411-435142 1.0000 100 chrV:435358-435940 1.0000 100 chrV:438470-438991 1.0000 100 chrV:441777-442669 1.0000 100 chrV:443055-443340 1.0000 100 chrV:469219-469684 1.0000 100 chrV:486952-487636 1.0000 100 chrV:550931-551827 1.0000 100 chrVI:4530-4758 1.0000 100 chrVI:64216-65423 1.0000 100 chrVI:95466-95901 1.0000 100 chrVI:101376-101808 1.0000 100 chrVI:137291-137814 1.0000 100 chrVI:157901-158270 1.0000 100 chrVI:162036-162395 1.0000 100 chrVI:167245-167683 1.0000 100 chrVI:180703-181378 1.0000 100 chrVI:191068-191752 1.0000 100 chrVI:210427-210944 1.0000 100 chrVI:220516-222360 1.0000 100 chrVI:223271-224158 1.0000 100 chrVI:226365-226952 1.0000 100 chrVII:801-2101 1.0000 100 chrVII:10129-10397 1.0000 100 chrVII:110225-110790 1.0000 100 chrVII:115146-115720 1.0000 100 chrVII:121993-122551 1.0000 100 chrVII:148234-149562 1.0000 100 chrVII:185200-186036 1.0000 100 chrVII:205103-205730 1.0000 100 chrVII:254150-254710 1.0000 100 chrVII:277033-278312 1.0000 100 chrVII:287179-287673 1.0000 100 chrVII:310326-312255 1.0000 100 chrVII:319206-320106 1.0000 100 chrVII:328366-329590 1.0000 100 chrVII:364889-366699 1.0000 100 chrVII:371209-371513 1.0000 100 chrVII:405469-405860 1.0000 100 chrVII:411946-412597 1.0000 100 chrVII:422881-423369 1.0000 100 chrVII:438548-439841 1.0000 100 chrVII:440636-441087 1.0000 100 chrVII:479187-482728 1.0000 100 chrVII:483399-483643 1.0000 100 chrVII:531412-531797 1.0000 100 chrVII:534263-535193 1.0000 100 chrVII:541710-542191 1.0000 100 chrVII:544404-544934 1.0000 100 chrVII:555106-556642 1.0000 100 chrVII:561495-561710 1.0000 100 chrVII:648783-649350 1.0000 100 chrVII:661512-661968 1.0000 100 chrVII:700171-701158 1.0000 100 chrVII:706202-706568 1.0000 100 chrVII:706908-707196 1.0000 100 chrVII:726176-728645 1.0000 100 chrVII:730962-731414 1.0000 100 chrVII:736175-737067 1.0000 100 chrVII:738513-739510 1.0000 100 chrVII:774142-774684 1.0000 100 chrVII:779375-779757 1.0000 100 chrVII:788319-788723 1.0000 100 chrVII:794160-794515 1.0000 100 chrVII:823349-823703 1.0000 100 chrVII:828384-828998 1.0000 100 chrVII:845290-846021 1.0000 100 chrVII:856567-857668 1.0000 100 chrVII:876054-876549 1.0000 100 chrVII:878604-879130 1.0000 100 chrVII:882805-883691 1.0000 100 chrVII:930196-931142 1.0000 100 chrVII:1000341-1000592 1.0000 100 chrVII:1003637-1004399 1.0000 100 chrVIII:62610-63033 1.0000 100 chrVIII:74898-75917 1.0000 100 chrVIII:103632-104819 1.0000 100 chrVIII:115884-116301 1.0000 100 chrVIII:125898-126314 1.0000 100 chrVIII:132740-133346 1.0000 100 chrVIII:133873-134895 1.0000 100 chrVIII:145292-146766 1.0000 100 chrVIII:148986-149239 1.0000 100 chrVIII:174882-176031 1.0000 100 chrVIII:237696-238084 1.0000 100 chrVIII:296727-297255 1.0000 100 chrVIII:358274-359163 1.0000 100 chrVIII:382679-383360 1.0000 100 chrVIII:388678-389219 1.0000 100 chrVIII:411040-411629 1.0000 100 chrVIII:466908-467204 1.0000 100 chrVIII:475025-475905 1.0000 100 chrVIII:505816-506219 1.0000 100 chrVIII:555071-555521 1.0000 100 chrVIII:555735-556517 1.0000 100 chrVIII:556951-557170 1.0000 100 chrX:59003-59387 1.0000 100 chrX:73364-75740 1.0000 100 chrX:90041-90434 1.0000 100 chrX:115508-116227 1.0000 100 chrX:157431-157947 1.0000 100 chrX:160040-160266 1.0000 100 chrX:196406-197520 1.0000 100 chrX:204512-205006 1.0000 100 chrX:233133-233519 1.0000 100 chrX:233700-234782 1.0000 100 chrX:354161-354606 1.0000 100 chrX:355201-355957 1.0000 100 chrX:374203-374888 1.0000 100 chrX:377508-378568 1.0000 100 chrX:390912-391579 1.0000 100 chrX:391808-392103 1.0000 100 chrX:396484-397037 1.0000 100 chrX:414729-415427 1.0000 100 chrX:415643-416332 1.0000 100 chrX:422720-423580 1.0000 100 chrX:424279-424733 1.0000 100 chrX:517654-518101 1.0000 100 chrX:523917-524430 1.0000 100 chrX:531037-531386 1.0000 100 chrX:531561-532243 1.0000 100 chrX:538524-538773 1.0000 100 chrX:540755-542158 1.0000 100 chrX:542757-543256 1.0000 100 chrX:545414-545708 1.0000 100 chrX:607632-608139 1.0000 100 chrX:617712-618159 1.0000 100 chrX:651227-651619 1.0000 100 chrX:703251-703656 1.0000 100 chrX:745100-745515 1.0000 100 chrXI:777-1098 1.0000 100 chrXI:46589-47006 1.0000 100 chrXI:67795-68053 1.0000 100 chrXI:74422-74801 1.0000 100 chrXI:84014-84388 1.0000 100 chrXI:108497-110124 1.0000 100 chrXI:140778-141383 1.0000 100 chrXI:158178-158675 1.0000 100 chrXI:162029-162731 1.0000 100 chrXI:202233-203241 1.0000 100 chrXI:219549-220101 1.0000 100 chrXI:302665-303230 1.0000 100 chrXI:307946-308511 1.0000 100 chrXI:313267-313988 1.0000 100 chrXI:379407-379914 1.0000 100 chrXI:382208-382454 1.0000 100 chrXI:430901-431656 1.0000 100 chrXI:457450-459144 1.0000 100 chrXI:490732-491333 1.0000 100 chrXI:512882-513516 1.0000 100 chrXI:517795-518067 1.0000 100 chrXI:519343-521225 1.0000 100 chrXI:578762-579348 1.0000 100 chrXI:617068-619367 1.0000 100 chrXI:666610-666777 1.0000 100 chrXII:53-217 1.0000 100 chrXII:5581-5795 1.0000 100 chrXII:48695-49231 1.0000 100 chrXII:92408-92717 1.0000 100 chrXII:167710-168242 1.0000 100 chrXII:214622-215067 1.0000 100 chrXII:232163-234028 1.0000 100 chrXII:241609-242009 1.0000 100 chrXII:262307-263920 1.0000 100 chrXII:281981-282274 1.0000 100 chrXII:282593-283926 1.0000 100 chrXII:366021-366856 1.0000 100 chrXII:370581-370916 1.0000 100 chrXII:374210-374732 1.0000 100 chrXII:424176-424472 1.0000 100 chrXII:426896-427802 1.0000 100 chrXII:448524-448972 1.0000 100 chrXII:451441-451634 1.0000 100 chrXII:459597-460059 1.0000 100 chrXII:460491-460661 1.0000 100 chrXII:498477-499771 1.0000 100 chrXII:521731-522433 1.0000 100 chrXII:592363-592717 1.0000 100 chrXII:605182-605631 1.0000 100 chrXII:628165-629020 1.0000 100 chrXII:636744-639909 1.0000 100 chrXII:656842-657232 1.0000 100 chrXII:673526-674920 1.0000 100 chrXII:687660-687853 1.0000 100 chrXII:712373-712654 1.0000 100 chrXII:713137-713589 1.0000 100 chrXII:732006-732294 1.0000 100 chrXII:734452-734986 1.0000 100 chrXII:780811-781883 1.0000 100 chrXII:783921-784507 1.0000 100 chrXII:793718-795286 1.0000 100 chrXII:796291-797372 1.0000 100 chrXII:818505-820274 1.0000 100 chrXII:875185-875906 1.0000 100 chrXII:897674-898212 1.0000 100 chrXII:903429-903693 1.0000 100 chrXII:922095-922579 1.0000 100 chrXII:932067-932505 1.0000 100 chrXII:962830-963365 1.0000 100 chrXII:975797-976102 1.0000 100 chrXII:1018791-1019600 1.0000 100 chrXII:1028209-1028572 1.0000 100 chrXII:1051930-1052219 1.0000 100 chrXII:1061329-1061780 1.0000 100 chrXII:1064003-1064182 1.0000 100 chrXIII:91428-92091 1.0000 100 chrXIII:131574-132104 1.0000 100 chrXIII:145520-146594 1.0000 100 chrXIII:168681-169010 1.0000 100 chrXIII:195937-196304 1.0000 100 chrXIII:224095-224573 1.0000 100 chrXIII:225341-226655 1.0000 100 chrXIII:253383-253604 1.0000 100 chrXIII:259002-259461 1.0000 100 chrXIII:272232-272543 1.0000 100 chrXIII:290391-291147 1.0000 100 chrXIII:296733-298907 1.0000 100 chrXIII:302877-303108 1.0000 100 chrXIII:320988-321631 1.0000 100 chrXIII:352024-352604 1.0000 100 chrXIII:362942-363417 1.0000 100 chrXIII:372179-372768 1.0000 100 chrXIII:378777-379645 1.0000 100 chrXIII:420316-420852 1.0000 100 chrXIII:463426-463880 1.0000 100 chrXIII:480428-480887 1.0000 100 chrXIII:504649-505199 1.0000 100 chrXIII:550939-553359 1.0000 100 chrXIII:572635-573276 1.0000 100 chrXIII:586481-586907 1.0000 100 chrXIII:650858-651238 1.0000 100 chrXIII:732020-733187 1.0000 100 chrXIII:747704-748897 1.0000 100 chrXIII:753400-754821 1.0000 100 chrXIII:767223-768430 1.0000 100 chrXIII:808072-808521 1.0000 100 chrXIII:837717-838327 1.0000 100 chrXIII:861221-861432 1.0000 100 chrXIV:63122-64486 1.0000 100 chrXIV:96017-96468 1.0000 100 chrXIV:102572-103584 1.0000 100 chrXIV:104615-105149 1.0000 100 chrXIV:241377-241779 1.0000 100 chrXIV:330414-331098 1.0000 100 chrXIV:374675-375099 1.0000 100 chrXIV:442866-444246 1.0000 100 chrXIV:444468-444791 1.0000 100 chrXIV:495184-495829 1.0000 100 chrXIV:499132-499484 1.0000 100 chrXIV:499655-500692 1.0000 100 chrXIV:546558-547451 1.0000 100 chrXIV:560418-560787 1.0000 100 chrXIV:568052-568546 1.0000 100 chrXIV:569526-570054 1.0000 100 chrXIV:602065-602569 1.0000 100 chrXIV:631748-632015 1.0000 100 chrXIV:632494-632889 1.0000 100 chrXIV:725684-726360 1.0000 100 chrXIV:783737-784315 1.0000 100 chrXV:79740-80144 1.0000 100 chrXV:92759-94281 1.0000 100 chrXV:94481-94807 1.0000 100 chrXV:109544-110022 1.0000 100 chrXV:110860-111205 1.0000 100 chrXV:113455-113876 1.0000 100 chrXV:161104-161731 1.0000 100 chrXV:167784-168479 1.0000 100 chrXV:216281-216685 1.0000 100 chrXV:226589-226868 1.0000 100 chrXV:228061-228527 1.0000 100 chrXV:253827-254084 1.0000 100 chrXV:274466-275030 1.0000 100 chrXV:281716-282445 1.0000 100 chrXV:287235-288392 1.0000 100 chrXV:300853-301689 1.0000 100 chrXV:340114-340790 1.0000 100 chrXV:353901-354327 1.0000 100 chrXV:354549-354788 1.0000 100 chrXV:438449-439299 1.0000 100 chrXV:444695-446380 1.0000 100 chrXV:464274-464884 1.0000 100 chrXV:487446-487736 1.0000 100 chrXV:504879-505516 1.0000 100 chrXV:571450-572392 1.0000 100 chrXV:594312-594644 1.0000 100 chrXV:639194-639415 1.0000 100 chrXV:663247-664791 1.0000 100 chrXV:678249-679320 1.0000 100 chrXV:710069-710693 1.0000 100 chrXV:729062-729690 1.0000 100 chrXV:779689-780954 1.0000 100 chrXV:853999-854779 1.0000 100 chrXV:866543-867177 1.0000 100 chrXV:925220-925401 1.0000 100 chrXV:968117-968447 1.0000 100 chrXV:976382-976717 1.0000 100 chrXV:978808-979135 1.0000 100 chrXV:979733-981254 1.0000 100 chrXV:1003940-1004392 1.0000 100 chrXV:1025407-1026247 1.0000 100 chrXV:1027849-1029582 1.0000 100 chrXVI:55827-56349 1.0000 100 chrXVI:76218-76745 1.0000 100 chrXVI:188156-189102 1.0000 100 chrXVI:194167-194503 1.0000 100 chrXVI:209985-210459 1.0000 100 chrXVI:279965-280194 1.0000 100 chrXVI:280630-282941 1.0000 100 chrXVI:302458-302987 1.0000 100 chrXVI:303252-304012 1.0000 100 chrXVI:338755-339174 1.0000 100 chrXVI:378661-379244 1.0000 100 chrXVI:406205-407734 1.0000 100 chrXVI:434877-436189 1.0000 100 chrXVI:520104-520556 1.0000 100 chrXVI:559966-560463 1.0000 100 chrXVI:571637-572522 1.0000 100 chrXVI:581836-582479 1.0000 100 chrXVI:622261-622868 1.0000 100 chrXVI:689366-689876 1.0000 100 chrXVI:699832-700652 1.0000 100 chrXVI:718654-719024 1.0000 100 chrXVI:731637-732315 1.0000 100 chrXVI:744063-744553 1.0000 100 chrXVI:769025-769482 1.0000 100 chrXVI:775672-776156 1.0000 100 chrXVI:794457-796219 1.0000 100 chrXVI:810572-811247 1.0000 100 chrXVI:819325-819939 1.0000 100 chrXVI:856802-857099 1.0000 100 chrXVI:859049-859919 1.0000 100 chrXVI:860132-860666 1.0000 100 chrXVI:879450-880549 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HAA1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HAA1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HAA1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 472 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 47200 N= 472 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--HAA1/background): A 0.313 C 0.187 G 0.187 T 0.313 ******************************************************************************** ******************************************************************************** MOTIF MCSGGRMTCGAACCSGBGAYCTYMHGVTT MEME-1 width = 29 sites = 58 llr = 1141 E-value = 6.5e-218 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCSGGRMTCGAACCSGBGAYCTYMHGVTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:22:64:::aa:112:26::11431411 pos.-specific C 5631::2:8:::a7532:26626432312 probability G 2257a42::a:::135581231::27312 matrix T :2:1::2a2::::21:3:1316322::65 bits 2.4 * 2.2 * * * 1.9 * * * 1.7 * ****** * Relative 1.5 * ****** * Entropy 1.2 * ****** * * (28.4 bits) 1.0 ***** ******* * * * 0.7 ***** ********* * ** * * 0.5 ****** *********** ***** ** 0.2 ****** ***************** **** 0.0 ----------------------------- Multilevel CCGGGAATCGAACCCGGGACCTCACGATT consensus AGC GC GCT TGCTCACG sequence G AC T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCSGGRMTCGAACCSGBGAYCTYMHGVTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:631748-632015 + 23 1.50e-15 TGGGGGCGAG CCGGGACTCGAACCCGGGACCTCCCGCAC CCTAAGCGAG chrIII:123439-123796 + 18 1.50e-15 GTGGGGCGAG CCGGGACTCGAACCCGGGACCTCCCGCAC CCTAAGCGAG chrXVI:860132-860666 - 64 8.94e-13 TGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrX:531561-532243 - 10 8.94e-13 ACTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTG chrX:396484-397037 + 24 8.94e-13 AATGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrV:61088-62672 + 68 8.94e-13 GCTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAA chrIII:142418-143015 + 43 8.94e-13 GATGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrVIII:133873-134895 - 22 2.33e-12 AAAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrV:130833-131390 + 29 1.15e-11 ATAGGTCTTA CCCGGATTCGAACCGGGGTTGTTCGGATC AAAACCGAAA chrXVI:209985-210459 + 28 1.52e-11 AACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrV:176873-177441 - 27 1.52e-11 TACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrIV:1016955-1017526 + 25 1.52e-11 AACTCCGAAG CGGGGAGTCGAACCCCGGTCTCCACGGTG AGAACGTGAT chrII:644958-645431 - 58 1.52e-11 AACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrXII:1051930-1052219 + 55 2.26e-11 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrV:443055-443340 + 63 2.26e-11 TATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACG chrV:311740-312295 + 64 2.26e-11 ATTGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTT GCAAGGGA chrXIII:420316-420852 + 62 3.77e-11 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:372179-372768 + 30 3.77e-11 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrVII:823349-823703 - 43 3.77e-11 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrV:438470-438991 - 57 3.77e-11 ATTGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:480428-480887 + 22 4.84e-11 GAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIX:299995-300530 + 24 4.84e-11 ATAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIV:1351685-1353251 + 56 4.84e-11 ATAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrXIII:808072-808521 + 8 1.26e-10 GGTCCCA CCCGGATTCGAACTGGGGTTGTTCGGATC AGAACCGAAA chrXIII:195937-196304 + 6 1.58e-10 GCGAG CTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrVIII:388678-389219 + 3 1.58e-10 AG CTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrII:326479-327154 + 34 1.77e-10 TTTGATCCAA CCGAGGTTCGAACTCGGGATCTTCGCCGT GTAAAGGCGA chrXIII:131574-132104 + 44 6.99e-10 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXI:490732-491333 - 22 6.99e-10 TTCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrX:374203-374888 + 19 6.99e-10 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrIV:619699-620236 + 60 6.99e-10 ATCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrII:405655-406220 - 26 6.99e-10 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXIII:837717-838327 - 8 7.72e-10 TATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGT chrXIII:168681-169010 - 52 7.72e-10 TATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrX:542757-543256 + 8 7.72e-10 CTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrXVI:622261-622868 + 34 8.52e-10 AATGCGAATT CTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrXVI:559966-560463 + 42 8.52e-10 AATGCGAATT CTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrXIV:96017-96468 + 57 8.52e-10 TTTGAGCGGT ACGAGAATCGAACCCGTGTCCCCACCTTG GAAGGGTGGG chrXIII:352024-352604 - 70 8.52e-10 TT CTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrVIII:237696-238084 + 16 8.52e-10 AATGCGAATT CTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrXVI:856802-857099 - 38 1.14e-09 AATGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrXVI:769025-769482 + 12 1.14e-09 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrXI:578762-579348 - 19 1.14e-09 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrVII:774142-774684 - 22 1.14e-09 TTTGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrXIV:104615-105149 - 9 1.51e-09 TATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATT ACTAGTGT chrIX:325534-326064 - 35 1.51e-09 ATTGCTTCCA ATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrX:415643-416332 + 2 3.40e-09 G ACAGGAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrXII:167710-168242 + 26 1.15e-08 AACGACAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrVIII:132740-133346 + 41 1.15e-08 ATCGACAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrIV:519655-519952 - 37 1.15e-08 ATTGAAGGAT GCGAGGTTCGAACTCGCGCGGACAACCGT CCAACAGATC chrIV:437536-438139 - 30 1.15e-08 GACGACAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrII:347407-347932 - 31 1.15e-08 ACTGAAGGAT GCGAGGTTCGAACTCGCGCGGACAACCGT CCAACAGATC chrII:226972-227338 - 15 1.15e-08 AACGACAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrII:9455-9862 - 22 1.15e-08 ACTGAAGGAT GCGAGGTTCGAACTCGCGCGGACAACCGT CCAACAGATC chrVIII:466908-467204 - 19 1.45e-08 AATGCCACCT GCCAGAATTGAACTAGCGACCTTTGCATT ACAAGTGCAA chrXVI:689366-689876 - 39 1.12e-07 TACGACACCA GCAGGATTTGAACCAGCGCGGGCAGAGCC CAACAGATTT chrV:288142-288736 + 62 1.12e-07 AACGACACCA GCAGGATTTGAACCAGCGCGGGCAGAGCC CAACAGATTT chrXII:605182-605631 + 47 1.56e-06 TGCTATAAGC ACGAAGCTCTAACCACTGAGCTACACGAG CATTTTCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCSGGRMTCGAACCSGBGAYCTYMHGVTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631748-632015 1.5e-15 22_[+1]_49 chrIII:123439-123796 1.5e-15 17_[+1]_54 chrXVI:860132-860666 8.9e-13 63_[-1]_8 chrX:531561-532243 8.9e-13 9_[-1]_62 chrX:396484-397037 8.9e-13 23_[+1]_48 chrV:61088-62672 8.9e-13 67_[+1]_4 chrIII:142418-143015 8.9e-13 42_[+1]_29 chrVIII:133873-134895 2.3e-12 21_[-1]_50 chrV:130833-131390 1.2e-11 28_[+1]_43 chrXVI:209985-210459 1.5e-11 27_[+1]_44 chrV:176873-177441 1.5e-11 26_[-1]_45 chrIV:1016955-1017526 1.5e-11 24_[+1]_47 chrII:644958-645431 1.5e-11 57_[-1]_14 chrXII:1051930-1052219 2.3e-11 54_[+1]_17 chrV:443055-443340 2.3e-11 62_[+1]_9 chrV:311740-312295 2.3e-11 63_[+1]_8 chrXIII:420316-420852 3.8e-11 61_[+1]_10 chrXIII:372179-372768 3.8e-11 29_[+1]_42 chrVII:823349-823703 3.8e-11 42_[-1]_29 chrV:438470-438991 3.8e-11 56_[-1]_15 chrXIII:480428-480887 4.8e-11 21_[+1]_50 chrIX:299995-300530 4.8e-11 23_[+1]_48 chrIV:1351685-1353251 4.8e-11 55_[+1]_16 chrXIII:808072-808521 1.3e-10 7_[+1]_64 chrXIII:195937-196304 1.6e-10 5_[+1]_66 chrVIII:388678-389219 1.6e-10 2_[+1]_69 chrII:326479-327154 1.8e-10 33_[+1]_38 chrXIII:131574-132104 7e-10 43_[+1]_28 chrXI:490732-491333 7e-10 21_[-1]_50 chrX:374203-374888 7e-10 18_[+1]_53 chrIV:619699-620236 7e-10 59_[+1]_12 chrII:405655-406220 7e-10 25_[-1]_46 chrXIII:837717-838327 7.7e-10 7_[-1]_64 chrXIII:168681-169010 7.7e-10 51_[-1]_20 chrX:542757-543256 7.7e-10 7_[+1]_64 chrXVI:622261-622868 8.5e-10 33_[+1]_38 chrXVI:559966-560463 8.5e-10 41_[+1]_30 chrXIV:96017-96468 8.5e-10 56_[+1]_15 chrXIII:352024-352604 8.5e-10 69_[-1]_2 chrVIII:237696-238084 8.5e-10 15_[+1]_56 chrXVI:856802-857099 1.1e-09 37_[-1]_34 chrXVI:769025-769482 1.1e-09 11_[+1]_60 chrXI:578762-579348 1.1e-09 18_[-1]_53 chrVII:774142-774684 1.1e-09 21_[-1]_50 chrXIV:104615-105149 1.5e-09 8_[-1]_63 chrIX:325534-326064 1.5e-09 34_[-1]_37 chrX:415643-416332 3.4e-09 1_[+1]_70 chrXII:167710-168242 1.2e-08 25_[+1]_46 chrVIII:132740-133346 1.2e-08 40_[+1]_31 chrIV:519655-519952 1.2e-08 36_[-1]_35 chrIV:437536-438139 1.2e-08 29_[-1]_42 chrII:347407-347932 1.2e-08 30_[-1]_41 chrII:226972-227338 1.2e-08 14_[-1]_57 chrII:9455-9862 1.2e-08 21_[-1]_50 chrVIII:466908-467204 1.4e-08 18_[-1]_53 chrXVI:689366-689876 1.1e-07 38_[-1]_33 chrV:288142-288736 1.1e-07 61_[+1]_10 chrXII:605182-605631 1.6e-06 46_[+1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCSGGRMTCGAACCSGBGAYCTYMHGVTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCSGGRMTCGAACCSGBGAYCTYMHGVTT width=29 seqs=58 chrXIV:631748-632015 ( 23) CCGGGACTCGAACCCGGGACCTCCCGCAC 1 chrIII:123439-123796 ( 18) CCGGGACTCGAACCCGGGACCTCCCGCAC 1 chrXVI:860132-860666 ( 64) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrX:531561-532243 ( 10) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrX:396484-397037 ( 24) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrV:61088-62672 ( 68) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrIII:142418-143015 ( 43) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrVIII:133873-134895 ( 22) CCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrV:130833-131390 ( 29) CCCGGATTCGAACCGGGGTTGTTCGGATC 1 chrXVI:209985-210459 ( 28) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrV:176873-177441 ( 27) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrIV:1016955-1017526 ( 25) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrII:644958-645431 ( 58) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrXII:1051930-1052219 ( 55) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrV:443055-443340 ( 63) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrV:311740-312295 ( 64) ACCGGAATCGAACCGATGACCTCTTCCTT 1 chrXIII:420316-420852 ( 62) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:372179-372768 ( 30) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrVII:823349-823703 ( 43) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrV:438470-438991 ( 57) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:480428-480887 ( 22) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrIX:299995-300530 ( 24) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrIV:1351685-1353251 ( 56) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrXIII:808072-808521 ( 8) CCCGGATTCGAACTGGGGTTGTTCGGATC 1 chrXIII:195937-196304 ( 6) CTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrVIII:388678-389219 ( 3) CTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrII:326479-327154 ( 34) CCGAGGTTCGAACTCGGGATCTTCGCCGT 1 chrXIII:131574-132104 ( 44) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrXI:490732-491333 ( 22) CCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrX:374203-374888 ( 19) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrIV:619699-620236 ( 60) CCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrII:405655-406220 ( 26) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrXIII:837717-838327 ( 8) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrXIII:168681-169010 ( 52) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrX:542757-543256 ( 8) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrXVI:622261-622868 ( 34) CTGTGGATCGAACACAGGACCTCCAGATA 1 chrXVI:559966-560463 ( 42) CTGTGGATCGAACACAGGACCTCCAGATA 1 chrXIV:96017-96468 ( 57) ACGAGAATCGAACCCGTGTCCCCACCTTG 1 chrXIII:352024-352604 ( 70) CTGTGGATCGAACACAGGACCTCCAGATA 1 chrVIII:237696-238084 ( 16) CTGTGGATCGAACACAGGACCTCCAGATA 1 chrXVI:856802-857099 ( 38) TCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrXVI:769025-769482 ( 12) AGGGGGCTCGAACCCCTGACATTTCGGTA 1 chrXI:578762-579348 ( 19) AGGGGGCTCGAACCCCTGACATTTCGGTA 1 chrVII:774142-774684 ( 22) TCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrXIV:104615-105149 ( 9) ATCGGATTTGAACCGATGATCTCCACATT 1 chrIX:325534-326064 ( 35) ATCGGATTTGAACCGATGATCTCCACATT 1 chrX:415643-416332 ( 2) ACAGGAATTGAACCTGCAACCCTTCGATT 1 chrXII:167710-168242 ( 26) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrVIII:132740-133346 ( 41) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrIV:519655-519952 ( 37) GCGAGGTTCGAACTCGCGCGGACAACCGT 1 chrIV:437536-438139 ( 30) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrII:347407-347932 ( 31) GCGAGGTTCGAACTCGCGCGGACAACCGT 1 chrII:226972-227338 ( 15) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrII:9455-9862 ( 22) GCGAGGTTCGAACTCGCGCGGACAACCGT 1 chrVIII:466908-467204 ( 19) GCCAGAATTGAACTAGCGACCTTTGCATT 1 chrXVI:689366-689876 ( 39) GCAGGATTTGAACCAGCGCGGGCAGAGCC 1 chrV:288142-288736 ( 62) GCAGGATTTGAACCAGCGCGGGCAGAGCC 1 chrXII:605182-605631 ( 47) ACGAAGCTCTAACCACTGAGCTACACGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCSGGRMTCGAACCSGBGAYCTYMHGVTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 33984 bayes= 7.2858 E= 6.5e-218 -18 132 26 -318 -1250 161 37 -72 -101 88 142 -1250 -72 -185 188 -218 -418 -1250 239 -1250 95 -1250 109 -1250 34 37 -12 -72 -1250 -1250 -1250 168 -1250 215 -1250 -86 -1250 -1250 239 -418 168 -1250 -1250 -1250 168 -1250 -1250 -1250 -1250 242 -1250 -1250 -218 192 -185 -86 -218 137 81 -137 -60 47 152 -1250 -318 37 132 -28 -101 -1250 218 -1250 90 -27 -63 -118 -1250 156 -12 -18 -318 173 56 -218 -260 26 -85 99 -160 161 -1250 7 46 115 -1250 -101 -10 81 -27 -48 -160 37 181 -1250 46 47 65 -418 -137 -85 -44 103 -160 2 2 72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCSGGRMTCGAACCSGBGAYCTYMHGVTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 58 E= 6.5e-218 0.275862 0.465517 0.224138 0.034483 0.000000 0.568966 0.241379 0.189655 0.155172 0.344828 0.500000 0.000000 0.189655 0.051724 0.689655 0.068966 0.017241 0.000000 0.982759 0.000000 0.603448 0.000000 0.396552 0.000000 0.396552 0.241379 0.172414 0.189655 0.000000 0.000000 0.000000 1.000000 0.000000 0.827586 0.000000 0.172414 0.000000 0.000000 0.982759 0.017241 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.068966 0.706897 0.051724 0.172414 0.068966 0.482759 0.327586 0.120690 0.206897 0.258621 0.534483 0.000000 0.034483 0.241379 0.465517 0.258621 0.155172 0.000000 0.844828 0.000000 0.586207 0.155172 0.120690 0.137931 0.000000 0.551724 0.172414 0.275862 0.034483 0.620690 0.275862 0.068966 0.051724 0.224138 0.103448 0.620690 0.103448 0.568966 0.000000 0.327586 0.431034 0.413793 0.000000 0.155172 0.293103 0.327586 0.155172 0.224138 0.103448 0.241379 0.655172 0.000000 0.431034 0.258621 0.293103 0.017241 0.120690 0.103448 0.137931 0.637931 0.103448 0.189655 0.189655 0.517241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCSGGRMTCGAACCSGBGAYCTYMHGVTT MEME-1 regular expression -------------------------------------------------------------------------------- [CAG][CG][GC]GG[AG][AC]TCGAACC[CG][GCA][GTC]GA[CT][CG][TC][CT][AC][CAT][GC][AGC]TT -------------------------------------------------------------------------------- Time 211.48 secs. ******************************************************************************** ******************************************************************************** MOTIF SGNNSSCTYWAMCVACTNGGCCAMNNRVSC MEME-2 width = 30 sites = 54 llr = 958 E-value = 6.3e-154 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGNNSSCTYWAMCVACTNGGCCAMNNRVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 213311111564:39::333::a433531: pos.-specific C 412245723:16a4:9:21:a7:4221349 probability G 25325411::1::2:::367::::433441 matrix T 2223::16653::::1a2:::3:1221:1: bits 2.4 * 2.2 * * 1.9 * * * * 1.7 * ** * * Relative 1.5 * *** *** * Entropy 1.2 ** *** **** * (25.6 bits) 1.0 *** ** *** ***** * 0.7 *** * ** *** ***** ** 0.5 * *** ** ****** ****** *** 0.2 ** ************* ******* **** 0.0 ------------------------------ Multilevel CGATGCCTTAACCCACTAGGCCAAGAAGCC consensus GTGACG CTTA A GAA T CAGGAG sequence TG G C CT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGNNSSCTYWAMCVACTNGGCCAMNNRVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIV:602065-602569 - 45 4.51e-15 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC ATTGTTATCT chrII:197138-197842 - 54 4.51e-15 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC TTGATTACTG chrXIII:586481-586907 + 36 3.80e-11 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ATAGTAAGTT chrXIII:372179-372768 + 66 3.80e-11 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC AGGTT chrXI:379407-379914 - 70 3.80e-11 C AGATGCCATAACCGACTAGACCACGAAACC TATTAATCTG chrXI:307946-308511 + 10 3.80e-11 GTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrX:617712-618159 - 34 3.80e-11 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTTTGTT chrVII:823349-823703 - 6 3.80e-11 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTCT chrV:469219-469684 - 56 3.80e-11 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC AATTATTTCT chrV:438470-438991 - 20 3.80e-11 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC TAATTTGTTG chrXVI:856802-857099 - 2 5.05e-11 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC G chrXIII:259002-259461 + 29 1.69e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC ATACTAACTT chrXII:167710-168242 + 70 1.69e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC A chrXI:74422-74801 - 63 1.69e-10 TAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TAATTGCTAT chrVI:137291-137814 + 28 1.69e-10 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC AGTCACTTTT chrIII:127533-127879 - 60 1.69e-10 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrXV:353901-354327 + 20 1.92e-10 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC AGTAAACCGT chrIX:174703-175368 - 46 1.92e-10 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC TCGTACTTGT chrIV:1150702-1151182 + 20 3.15e-10 GAAATAGCAG GCATCGCCTTAACCACTCGGCCACTGGGAC TGAAACACTT chrIII:227753-228195 - 18 3.15e-10 CCATTCGAGT CTCTCGCCTTAACCACTCGGCCATAGTGCC ATTTCGATTT chrXIII:504649-505199 - 21 7.19e-10 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCTGT chrVII:422881-423369 - 17 7.19e-10 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCTGT chrXI:84014-84388 - 57 1.13e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATACAAATTT chrX:424279-424733 + 30 1.13e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrXIV:374675-375099 - 32 1.26e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAGTCCGC TTATTTTTCT chrIV:1095157-1095716 + 46 1.26e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAGTCCGC TAACATAAGA chrXVI:860132-860666 - 30 2.64e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrX:396484-397037 + 57 2.64e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTACTTTTGA chrVII:845290-846021 - 44 2.64e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrVI:180703-181378 + 25 2.64e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTATTTCTTG chrVI:162036-162395 - 63 2.64e-09 GATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrXIII:352024-352604 - 16 2.93e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTATATTCAT chrVIII:237696-238084 + 70 2.93e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC T chrVII:700171-701158 - 61 3.24e-09 GACCTCGACC TGACGCCTTAGACCACTCGGCCAGAGTACC AATTCATCTG chrXIII:572635-573276 + 21 3.58e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC TGTCTGTTAT chrIV:1175594-1176088 - 38 3.58e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrXVI:769025-769482 + 70 4.37e-09 GCTTAAAAGC CGAACGCTCTACCAACTGAGCTAACAAGGA T chrXIII:480428-480887 + 57 5.32e-09 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TACTTATTGT chrVII:121993-122551 - 47 5.32e-09 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TAATTCGTTG chrIX:299995-300530 + 59 5.32e-09 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TATTTCGTTG chrIV:1201505-1201983 - 56 5.32e-09 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TATTTATTTG chrIII:151138-151607 + 5 5.32e-09 GAGT CATACGCGCTACCGATTGCGCCAACAAGGC TCTTTAATTA chrII:326479-327154 + 70 1.03e-08 CGTGTAAAGG CGACGTCTTGAACCACTGGACCATTGGACC C chrXIII:195937-196304 + 71 1.48e-08 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC chrXII:92408-92717 - 36 1.48e-08 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTATTAACTT chrVIII:388678-389219 + 68 1.48e-08 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC ATG chrXI:46589-47006 + 30 1.77e-07 GCATTACGAG TGCGATGCCTTACCACTTGGCCAAAAGGGC TGAGTAATTT chrXVI:744063-744553 - 26 1.90e-07 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC TTTTACACTG chrVII:661512-661968 - 59 1.90e-07 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC AAATTTTTAC chrX:542757-543256 + 59 2.89e-07 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TATTTAATTG chrVI:210427-210944 + 43 2.89e-07 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TCGTTTTTGT chrVI:167245-167683 - 23 2.89e-07 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TCGTTTTTGT chrXIV:63122-64486 + 23 3.04e-06 TACATTCACC GCCAGCCTTAACGATCTTGGCTCTGGCACC AGCAGTGAAT chrXVI:879450-880549 - 64 3.59e-05 CTTCCTT GAGGTCCTTATCTAATTCGTCTAATAGCTC TTCCTTTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGNNSSCTYWAMCVACTNGGCCAMNNRVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602065-602569 4.5e-15 44_[-2]_26 chrII:197138-197842 4.5e-15 53_[-2]_17 chrXIII:586481-586907 3.8e-11 35_[+2]_35 chrXIII:372179-372768 3.8e-11 65_[+2]_5 chrXI:379407-379914 3.8e-11 69_[-2]_1 chrXI:307946-308511 3.8e-11 9_[+2]_61 chrX:617712-618159 3.8e-11 33_[-2]_37 chrVII:823349-823703 3.8e-11 5_[-2]_65 chrV:469219-469684 3.8e-11 55_[-2]_15 chrV:438470-438991 3.8e-11 19_[-2]_51 chrXVI:856802-857099 5.1e-11 1_[-2]_69 chrXIII:259002-259461 1.7e-10 28_[+2]_42 chrXII:167710-168242 1.7e-10 69_[+2]_1 chrXI:74422-74801 1.7e-10 62_[-2]_8 chrVI:137291-137814 1.7e-10 27_[+2]_43 chrIII:127533-127879 1.7e-10 59_[-2]_11 chrXV:353901-354327 1.9e-10 19_[+2]_51 chrIX:174703-175368 1.9e-10 45_[-2]_25 chrIV:1150702-1151182 3.1e-10 19_[+2]_51 chrIII:227753-228195 3.1e-10 17_[-2]_53 chrXIII:504649-505199 7.2e-10 20_[-2]_50 chrVII:422881-423369 7.2e-10 16_[-2]_54 chrXI:84014-84388 1.1e-09 56_[-2]_14 chrX:424279-424733 1.1e-09 29_[+2]_41 chrXIV:374675-375099 1.3e-09 31_[-2]_39 chrIV:1095157-1095716 1.3e-09 45_[+2]_25 chrXVI:860132-860666 2.6e-09 29_[-2]_41 chrX:396484-397037 2.6e-09 56_[+2]_14 chrVII:845290-846021 2.6e-09 43_[-2]_27 chrVI:180703-181378 2.6e-09 24_[+2]_46 chrVI:162036-162395 2.6e-09 62_[-2]_8 chrXIII:352024-352604 2.9e-09 15_[-2]_55 chrVIII:237696-238084 2.9e-09 69_[+2]_1 chrVII:700171-701158 3.2e-09 60_[-2]_10 chrXIII:572635-573276 3.6e-09 20_[+2]_50 chrIV:1175594-1176088 3.6e-09 37_[-2]_33 chrXVI:769025-769482 4.4e-09 69_[+2]_1 chrXIII:480428-480887 5.3e-09 56_[+2]_14 chrVII:121993-122551 5.3e-09 46_[-2]_24 chrIX:299995-300530 5.3e-09 58_[+2]_12 chrIV:1201505-1201983 5.3e-09 55_[-2]_15 chrIII:151138-151607 5.3e-09 4_[+2]_66 chrII:326479-327154 1e-08 69_[+2]_1 chrXIII:195937-196304 1.5e-08 70_[+2] chrXII:92408-92717 1.5e-08 35_[-2]_35 chrVIII:388678-389219 1.5e-08 67_[+2]_3 chrXI:46589-47006 1.8e-07 29_[+2]_41 chrXVI:744063-744553 1.9e-07 25_[-2]_45 chrVII:661512-661968 1.9e-07 58_[-2]_12 chrX:542757-543256 2.9e-07 58_[+2]_12 chrVI:210427-210944 2.9e-07 42_[+2]_28 chrVI:167245-167683 2.9e-07 22_[-2]_48 chrXIV:63122-64486 3e-06 22_[+2]_48 chrXVI:879450-880549 3.6e-05 63_[-2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGNNSSCTYWAMCVACTNGGCCAMNNRVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGNNSSCTYWAMCVACTNGGCCAMNNRVSC width=30 seqs=54 chrXIV:602065-602569 ( 45) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrII:197138-197842 ( 54) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXIII:586481-586907 ( 36) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXIII:372179-372768 ( 66) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:379407-379914 ( 70) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:307946-308511 ( 10) AGATGCCATAACCGACTAGACCACGAAACC 1 chrX:617712-618159 ( 34) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrVII:823349-823703 ( 6) AGATGCCATAACCGACTAGACCACGAAACC 1 chrV:469219-469684 ( 56) AGATGCCATAACCGACTAGACCACGAAACC 1 chrV:438470-438991 ( 20) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXVI:856802-857099 ( 2) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXIII:259002-259461 ( 29) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:167710-168242 ( 70) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXI:74422-74801 ( 63) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrVI:137291-137814 ( 28) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrIII:127533-127879 ( 60) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXV:353901-354327 ( 20) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIX:174703-175368 ( 46) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIV:1150702-1151182 ( 20) GCATCGCCTTAACCACTCGGCCACTGGGAC 1 chrIII:227753-228195 ( 18) CTCTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXIII:504649-505199 ( 21) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrVII:422881-423369 ( 17) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXI:84014-84388 ( 57) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrX:424279-424733 ( 30) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXIV:374675-375099 ( 32) CTGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrIV:1095157-1095716 ( 46) CTGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrXVI:860132-860666 ( 30) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrX:396484-397037 ( 57) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVII:845290-846021 ( 44) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:180703-181378 ( 25) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:162036-162395 ( 63) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:352024-352604 ( 16) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:237696-238084 ( 70) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVII:700171-701158 ( 61) TGACGCCTTAGACCACTCGGCCAGAGTACC 1 chrXIII:572635-573276 ( 21) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrIV:1175594-1176088 ( 38) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrXVI:769025-769482 ( 70) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrXIII:480428-480887 ( 57) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVII:121993-122551 ( 47) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIX:299995-300530 ( 59) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1201505-1201983 ( 56) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIII:151138-151607 ( 5) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrII:326479-327154 ( 70) CGACGTCTTGAACCACTGGACCATTGGACC 1 chrXIII:195937-196304 ( 71) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXII:92408-92717 ( 36) GCGAGAATCATACCACTAGACCACACGCCC 1 chrVIII:388678-389219 ( 68) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXI:46589-47006 ( 30) TGCGATGCCTTACCACTTGGCCAAAAGGGC 1 chrXVI:744063-744553 ( 26) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:661512-661968 ( 59) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrX:542757-543256 ( 59) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:210427-210944 ( 43) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:167245-167683 ( 23) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrXIV:63122-64486 ( 23) GCCAGCCTTAACGATCTTGGCTCTGGCACC 1 chrXVI:879450-880549 ( 64) GAGGTCCTTATCTAATTCGTCTAATAGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGNNSSCTYWAMCVACTNGGCCAMNNRVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 33512 bayes= 11.2244 E= 6.3e-154 -91 119 25 -76 -149 -34 152 -62 -8 -1 66 -49 -27 -1 25 9 -249 112 147 -408 -249 131 125 -308 -108 199 -175 -249 -127 -17 -75 92 -249 75 -1240 101 62 -233 -333 56 87 -133 -101 -27 38 166 -1240 -1240 -1240 236 -333 -408 1 112 37 -308 159 -1240 -233 -408 -1240 225 -1240 -149 -1240 -1240 -1240 168 9 12 57 -76 -27 -75 175 -1240 -8 -1240 187 -408 -1240 242 -1240 -1240 -1240 199 -1240 -27 165 -333 -1240 -1240 44 112 -333 -108 -27 12 91 -76 1 -17 75 -62 68 -53 57 -176 9 57 91 -308 -208 125 112 -208 -408 231 -175 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGNNSSCTYWAMCVACTNGGCCAMNNRVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 54 E= 6.3e-154 0.166667 0.425926 0.222222 0.185185 0.111111 0.148148 0.537037 0.203704 0.296296 0.185185 0.296296 0.222222 0.259259 0.185185 0.222222 0.333333 0.055556 0.407407 0.518519 0.018519 0.055556 0.462963 0.444444 0.037037 0.148148 0.740741 0.055556 0.055556 0.129630 0.166667 0.111111 0.592593 0.055556 0.314815 0.000000 0.629630 0.481481 0.037037 0.018519 0.462963 0.574074 0.074074 0.092593 0.259259 0.407407 0.592593 0.000000 0.000000 0.000000 0.962963 0.018519 0.018519 0.314815 0.407407 0.240741 0.037037 0.944444 0.000000 0.037037 0.018519 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.000000 1.000000 0.333333 0.203704 0.277778 0.185185 0.259259 0.111111 0.629630 0.000000 0.296296 0.000000 0.685185 0.018519 0.000000 1.000000 0.000000 0.000000 0.000000 0.740741 0.000000 0.259259 0.981481 0.018519 0.000000 0.000000 0.425926 0.407407 0.018519 0.148148 0.259259 0.203704 0.351852 0.185185 0.314815 0.166667 0.314815 0.203704 0.500000 0.129630 0.277778 0.092593 0.333333 0.277778 0.351852 0.037037 0.074074 0.444444 0.407407 0.074074 0.018519 0.925926 0.055556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGNNSSCTYWAMCVACTNGGCCAMNNRVSC MEME-2 regular expression -------------------------------------------------------------------------------- [CG][GT][AGT][TAG][GC][CG]CT[TC][AT][AT][CA]C[CAG]ACT[AGC][GA][GA]C[CT]A[AC][GAC][AGT][AG][GAC][CG]C -------------------------------------------------------------------------------- Time 402.95 secs. ******************************************************************************** ******************************************************************************** MOTIF TRNGRTGYAYGGRTG MEME-3 width = 15 sites = 63 llr = 718 E-value = 2.1e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRNGRTGYAYGGRTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 23314:::7:::4:: pos.-specific C 112::::3:4:::1: probability G 252762a:2:996:9 matrix T 5132:8:716:1:91 bits 2.4 2.2 * 1.9 * ** 1.7 * ** * Relative 1.5 * ** * Entropy 1.2 *** ***** (16.4 bits) 1.0 ***** ***** 0.7 ***** ****** 0.5 * ************ 0.2 ** ************ 0.0 --------------- Multilevel TGTGGTGTATGGGTG consensus GAA A C C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRNGRTGYAYGGRTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXV:639194-639415 + 60 8.40e-10 CGGTTGTATG TGTGGTGTACGGGTG TAAAAGTAGT chrX:545414-545708 + 43 3.59e-09 CACGTGCGAG TGCGGTGCATGGGTG GCTGTCTTTT chrVII:371209-371513 - 45 3.59e-09 TGCGGCGGTG TGAGGTGCATGGGTG CCGGTATTTT chrXII:5581-5795 - 29 1.41e-08 GTGGTGTGGG TGTGGTGTGTGGGTG TGGTGTATAT chrXI:666610-666777 + 48 1.41e-08 GGTGTGTGGG TGTGGTGTGTGGGTG TGTGGTGTGT chrXVI:279965-280194 - 86 2.66e-08 . TGAGGTGCACGGATG CGGACTTCTC chrI:81891-82301 + 61 4.92e-08 CTCATCTAGC GGAGGTGCACGGATG TACCAACAGT chrV:85113-85447 - 71 9.62e-08 CGGAATACAT CGAGGGGTATGGGTG GATGATATCA chrVII:483399-483643 + 74 1.21e-07 GGCAAAACAG AGTGATGTATGGGTG ATCCCAGCAA chrIV:538874-539317 - 61 1.21e-07 AAGGATTGAA TGAGGGGTGTGGGTG TGATAATTCA chrXIII:145520-146594 - 78 1.45e-07 GTATGGTG TATGGTGTATGGATG TACAAAAATG chrXII:1028209-1028572 - 59 1.45e-07 ACCCATACAT TTTGGTGCATGGGTG ATATTTTGTC chrX:160040-160266 - 72 1.72e-07 CGTGCAACAT TATGGGGTATGGGTG TGTCACACAT chrVIII:148986-149239 + 17 1.94e-07 TTTATAATTC AATGGTGCATGGGTG AAAATGTATG chrXIV:783737-784315 + 73 3.34e-07 TGTGTGGGTG TGGTGTGTGTGGGTG TGTGGGTGTG chrIII:163447-163894 + 24 3.94e-07 ACAGCCGCGG TTGGGTGCGTGGGTG CGGTAATTTA chrII:181313-181676 - 52 3.94e-07 ATGTATTCAA TGTAATGTATGGGTG CTTTGTAAAG chrXV:968117-968447 + 34 5.39e-07 CTCAAAAGCG TGGGGTGCGTGGGCG TGCGCTGCTC chrXII:932067-932505 + 20 5.39e-07 TTTTTTGTGT TCAGATGTACGGATG TACGGATGTA chrIV:229457-229876 - 39 5.39e-07 ATATAATCCT TCTGATGTACGGATG TTTTGTGTAA chrX:703251-703656 + 45 6.76e-07 AAAATAAATA GTGGATGCATGGGTG CTTCCACGCG chrVIII:125898-126314 - 47 6.76e-07 ATGTAAAGAT GTAGGTGTACGGATG CATTAACGTC chrXV:79740-80144 + 53 9.75e-07 GTCACTTATT TAATATGTACGGGTG TTTACATGGA chrXI:67795-68053 - 40 9.75e-07 GAAAATTTGA TGCGGTGCACGGATT TCAGCACGGG chrVIII:505816-506219 + 31 1.26e-06 AATGTCTGGG TGAAATGTATGGATG CATAATTGTC chrVII:1000341-1000592 - 43 1.26e-06 GTCCAAATAT GCAGGTGTTTGGGTG CTATCCTAGT chrXII:370581-370916 + 85 1.43e-06 GGACTAACCG TGTGGTTCATGGGTG G chrIV:411216-411665 - 46 1.43e-06 ACTTTGGGTG CCCGGGGTGTGGGTG TTTGATTTGT chrII:592883-593276 + 53 1.43e-06 TATGGAGTTC AAAGATGTATGGATG CAAGAAAAGA chrXIII:302877-303108 + 20 1.60e-06 AATCCAGGGG TGTGGGGTGTGGGCG CCCATATGCG chrXII:922095-922579 - 59 1.60e-06 ACGAGAATTG GAATATGTACGGGTG TCAATTTCAA chrXII:903429-903693 - 12 1.60e-06 TCCTAATGCA TGTGGTGCATGGGTC CAATGCTTCT chrXVI:699832-700652 - 69 1.77e-06 AAATTTAGTA TGCTGTGCTTGGGTG TTTTGAAGTG chrXV:253827-254084 + 70 1.94e-06 GATTTATACG CGCGGTGTACGGATT AAAAAAGTTT chrXI:382208-382454 - 25 1.94e-06 TTGTGTTGGG TGTGATGTCCGGATG CAACAGCAGC chrIV:358054-358464 + 37 1.94e-06 TTCCTTGTCA GATAATGTATGGGTG GTGTGTACAC chrIX:254205-254558 + 24 2.76e-06 GCGCGGCAAT TAGAATGTGTGGGTG CGGAAGCTCG chrII:44917-45365 - 80 3.05e-06 CATACA TAGAATGTACGGATG CATGATTGTC chrXV:216281-216685 - 19 3.40e-06 TGAGGAAGGC GCGGGTGCTCGGATG TTCCGATAAA chrXVI:520104-520556 - 85 3.77e-06 C GGCGAGGCCTGGGTG GAACACTCAG chrXIV:444468-444791 + 39 3.77e-06 GTACGGATTT AAAGAGGTACGGATG GAGACCGTAG chrX:90041-90434 - 75 3.77e-06 AAAAAAACAA GGCCATGTATGGGTG AGAATGTTCA chrVII:788319-788723 + 55 4.54e-06 ATTGGGTTTA GAGTATGCACGGATG TTGTAAGGAA chrXVI:280630-282941 - 32 4.93e-06 AGTAATCAAA GGAAGTGTAAGGGTG TAAAGAGGTA chrXV:94481-94807 - 77 4.93e-06 CATATCTTT TGTGGTGTACGGATA TGAATTTTTT chrII:165099-165378 - 70 5.79e-06 AGTGCTCTAA CGCGGTGTATGGGCT AGATTCGTAA chrXII:241609-242009 - 49 6.30e-06 GGTTTACATT TTATATGTACGGATG TAAAAAGGGA chrII:60840-61374 + 13 7.47e-06 CAAAGCAATT GAGGGTGTACAGATG TTAAAGTAGT chrIV:1355742-1356030 + 24 8.16e-06 GTAATTTTAA CCGAATGTATGGATG TTACAGGGAG chrXII:713137-713589 + 56 9.66e-06 ATTTTTTTAT ACATATGTACGGATG TGATAGTCTG chrXI:158178-158675 - 25 1.13e-05 GATTTATTTC CAGTGTGCACGGGTT GAAATAAATG chrIX:380662-380835 + 73 1.22e-05 CCATTTTCAA CAAGGGGCATAGGTG GCCGCAAACT chrIV:1400937-1401869 - 81 1.42e-05 GGGTA ATATATGTGTGGGTG GAAAATGATT chrIX:99632-100045 + 37 1.53e-05 ACTGGTGTTA CATGGTGTACCGATG CTTTAATTGC chrXIV:241377-241779 - 36 1.92e-05 AACGTGTATT GATGGTGTTTAGGTG CTGGATGTTG chrXII:424176-424472 - 35 1.92e-05 CGTGCACCAC AGCAATGTACGTGTG TAGCGACTTA chrV:354796-355342 + 3 2.22e-05 CA TACAGTGTATGTATG GGGTTAGGAG chrII:89269-90014 + 14 2.22e-05 AAGCTTTCCC AGCGATGCTCGTGTG TAGGACCGAA chrX:391808-392103 - 77 2.38e-05 AGGTCTGGG TGTGGGGCGTGTGCG ACCTCGTTGC chrIX:248538-249012 + 50 2.56e-05 ATCATTACAC CGCGAGTCGTGGGTG CATTGTAGTT chrX:651227-651619 - 74 2.74e-05 AACTTGAGAC AAATATGTATGGGTT AAGAATAATT chrIV:321623-321968 - 55 2.74e-05 AAAAATAAAG ATTGGTGTACGGAGG TAAAGGTATG chrXII:592363-592717 - 47 3.15e-05 TCTGATATCT TCGGATGCAAGGGTT CGAATCCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRNGRTGYAYGGRTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639194-639415 8.4e-10 59_[+3]_26 chrX:545414-545708 3.6e-09 42_[+3]_43 chrVII:371209-371513 3.6e-09 44_[-3]_41 chrXII:5581-5795 1.4e-08 28_[-3]_57 chrXI:666610-666777 1.4e-08 47_[+3]_38 chrXVI:279965-280194 2.7e-08 85_[-3] chrI:81891-82301 4.9e-08 60_[+3]_25 chrV:85113-85447 9.6e-08 70_[-3]_15 chrVII:483399-483643 1.2e-07 73_[+3]_12 chrIV:538874-539317 1.2e-07 60_[-3]_25 chrXIII:145520-146594 1.5e-07 77_[-3]_8 chrXII:1028209-1028572 1.5e-07 58_[-3]_27 chrX:160040-160266 1.7e-07 71_[-3]_14 chrVIII:148986-149239 1.9e-07 16_[+3]_69 chrXIV:783737-784315 3.3e-07 72_[+3]_13 chrIII:163447-163894 3.9e-07 23_[+3]_62 chrII:181313-181676 3.9e-07 51_[-3]_34 chrXV:968117-968447 5.4e-07 33_[+3]_52 chrXII:932067-932505 5.4e-07 19_[+3]_66 chrIV:229457-229876 5.4e-07 38_[-3]_47 chrX:703251-703656 6.8e-07 44_[+3]_41 chrVIII:125898-126314 6.8e-07 46_[-3]_39 chrXV:79740-80144 9.7e-07 52_[+3]_33 chrXI:67795-68053 9.7e-07 39_[-3]_46 chrVIII:505816-506219 1.3e-06 30_[+3]_55 chrVII:1000341-1000592 1.3e-06 42_[-3]_43 chrXII:370581-370916 1.4e-06 84_[+3]_1 chrIV:411216-411665 1.4e-06 45_[-3]_40 chrII:592883-593276 1.4e-06 52_[+3]_33 chrXIII:302877-303108 1.6e-06 19_[+3]_66 chrXII:922095-922579 1.6e-06 58_[-3]_27 chrXII:903429-903693 1.6e-06 11_[-3]_74 chrXVI:699832-700652 1.8e-06 68_[-3]_17 chrXV:253827-254084 1.9e-06 69_[+3]_16 chrXI:382208-382454 1.9e-06 24_[-3]_61 chrIV:358054-358464 1.9e-06 36_[+3]_49 chrIX:254205-254558 2.8e-06 23_[+3]_62 chrII:44917-45365 3.1e-06 79_[-3]_6 chrXV:216281-216685 3.4e-06 18_[-3]_67 chrXVI:520104-520556 3.8e-06 84_[-3]_1 chrXIV:444468-444791 3.8e-06 38_[+3]_47 chrX:90041-90434 3.8e-06 74_[-3]_11 chrVII:788319-788723 4.5e-06 54_[+3]_31 chrXVI:280630-282941 4.9e-06 31_[-3]_54 chrXV:94481-94807 4.9e-06 76_[-3]_9 chrII:165099-165378 5.8e-06 69_[-3]_16 chrXII:241609-242009 6.3e-06 48_[-3]_37 chrII:60840-61374 7.5e-06 12_[+3]_73 chrIV:1355742-1356030 8.2e-06 23_[+3]_62 chrXII:713137-713589 9.7e-06 55_[+3]_30 chrXI:158178-158675 1.1e-05 24_[-3]_61 chrIX:380662-380835 1.2e-05 72_[+3]_13 chrIV:1400937-1401869 1.4e-05 80_[-3]_5 chrIX:99632-100045 1.5e-05 36_[+3]_49 chrXIV:241377-241779 1.9e-05 35_[-3]_50 chrXII:424176-424472 1.9e-05 34_[-3]_51 chrV:354796-355342 2.2e-05 2_[+3]_83 chrII:89269-90014 2.2e-05 13_[+3]_72 chrX:391808-392103 2.4e-05 76_[-3]_9 chrIX:248538-249012 2.6e-05 49_[+3]_36 chrX:651227-651619 2.7e-05 73_[-3]_12 chrIV:321623-321968 2.7e-05 54_[-3]_31 chrXII:592363-592717 3.2e-05 46_[-3]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRNGRTGYAYGGRTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRNGRTGYAYGGRTG width=15 seqs=63 chrXV:639194-639415 ( 60) TGTGGTGTACGGGTG 1 chrX:545414-545708 ( 43) TGCGGTGCATGGGTG 1 chrVII:371209-371513 ( 45) TGAGGTGCATGGGTG 1 chrXII:5581-5795 ( 29) TGTGGTGTGTGGGTG 1 chrXI:666610-666777 ( 48) TGTGGTGTGTGGGTG 1 chrXVI:279965-280194 ( 86) TGAGGTGCACGGATG 1 chrI:81891-82301 ( 61) GGAGGTGCACGGATG 1 chrV:85113-85447 ( 71) CGAGGGGTATGGGTG 1 chrVII:483399-483643 ( 74) AGTGATGTATGGGTG 1 chrIV:538874-539317 ( 61) TGAGGGGTGTGGGTG 1 chrXIII:145520-146594 ( 78) TATGGTGTATGGATG 1 chrXII:1028209-1028572 ( 59) TTTGGTGCATGGGTG 1 chrX:160040-160266 ( 72) TATGGGGTATGGGTG 1 chrVIII:148986-149239 ( 17) AATGGTGCATGGGTG 1 chrXIV:783737-784315 ( 73) TGGTGTGTGTGGGTG 1 chrIII:163447-163894 ( 24) TTGGGTGCGTGGGTG 1 chrII:181313-181676 ( 52) TGTAATGTATGGGTG 1 chrXV:968117-968447 ( 34) TGGGGTGCGTGGGCG 1 chrXII:932067-932505 ( 20) TCAGATGTACGGATG 1 chrIV:229457-229876 ( 39) TCTGATGTACGGATG 1 chrX:703251-703656 ( 45) GTGGATGCATGGGTG 1 chrVIII:125898-126314 ( 47) GTAGGTGTACGGATG 1 chrXV:79740-80144 ( 53) TAATATGTACGGGTG 1 chrXI:67795-68053 ( 40) TGCGGTGCACGGATT 1 chrVIII:505816-506219 ( 31) TGAAATGTATGGATG 1 chrVII:1000341-1000592 ( 43) GCAGGTGTTTGGGTG 1 chrXII:370581-370916 ( 85) TGTGGTTCATGGGTG 1 chrIV:411216-411665 ( 46) CCCGGGGTGTGGGTG 1 chrII:592883-593276 ( 53) AAAGATGTATGGATG 1 chrXIII:302877-303108 ( 20) TGTGGGGTGTGGGCG 1 chrXII:922095-922579 ( 59) GAATATGTACGGGTG 1 chrXII:903429-903693 ( 12) TGTGGTGCATGGGTC 1 chrXVI:699832-700652 ( 69) TGCTGTGCTTGGGTG 1 chrXV:253827-254084 ( 70) CGCGGTGTACGGATT 1 chrXI:382208-382454 ( 25) TGTGATGTCCGGATG 1 chrIV:358054-358464 ( 37) GATAATGTATGGGTG 1 chrIX:254205-254558 ( 24) TAGAATGTGTGGGTG 1 chrII:44917-45365 ( 80) TAGAATGTACGGATG 1 chrXV:216281-216685 ( 19) GCGGGTGCTCGGATG 1 chrXVI:520104-520556 ( 85) GGCGAGGCCTGGGTG 1 chrXIV:444468-444791 ( 39) AAAGAGGTACGGATG 1 chrX:90041-90434 ( 75) GGCCATGTATGGGTG 1 chrVII:788319-788723 ( 55) GAGTATGCACGGATG 1 chrXVI:280630-282941 ( 32) GGAAGTGTAAGGGTG 1 chrXV:94481-94807 ( 77) TGTGGTGTACGGATA 1 chrII:165099-165378 ( 70) CGCGGTGTATGGGCT 1 chrXII:241609-242009 ( 49) TTATATGTACGGATG 1 chrII:60840-61374 ( 13) GAGGGTGTACAGATG 1 chrIV:1355742-1356030 ( 24) CCGAATGTATGGATG 1 chrXII:713137-713589 ( 56) ACATATGTACGGATG 1 chrXI:158178-158675 ( 25) CAGTGTGCACGGGTT 1 chrIX:380662-380835 ( 73) CAAGGGGCATAGGTG 1 chrIV:1400937-1401869 ( 81) ATATATGTGTGGGTG 1 chrIX:99632-100045 ( 37) CATGGTGTACCGATG 1 chrXIV:241377-241779 ( 36) GATGGTGTTTAGGTG 1 chrXII:424176-424472 ( 35) AGCAATGTACGTGTG 1 chrV:354796-355342 ( 3) TACAGTGTATGTATG 1 chrII:89269-90014 ( 14) AGCGATGCTCGTGTG 1 chrX:391808-392103 ( 77) TGTGGGGCGTGTGCG 1 chrIX:248538-249012 ( 50) CGCGAGTCGTGGGTG 1 chrX:651227-651619 ( 74) AAATATGTATGGGTT 1 chrIV:321623-321968 ( 55) ATTGGTGTACGGAGG 1 chrXII:592363-592717 ( 47) TCGGATGCAAGGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRNGRTGYAYGGRTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 40592 bayes= 10.6412 E= 2.1e-055 -98 -39 14 65 -13 -56 135 -149 -5 3 3 2 -113 -356 187 -98 40 -1262 165 -1262 -1262 -1262 -24 143 -1262 -1262 237 -330 -1262 90 -1262 106 116 -256 3 -198 -330 103 -1262 91 -272 -356 232 -1262 -1262 -1262 232 -230 22 -1262 176 -1262 -1262 -156 -356 156 -430 -356 222 -172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRNGRTGYAYGGRTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 63 E= 2.1e-055 0.158730 0.142857 0.206349 0.492063 0.285714 0.126984 0.476190 0.111111 0.301587 0.190476 0.190476 0.317460 0.142857 0.015873 0.682540 0.158730 0.412698 0.000000 0.587302 0.000000 0.000000 0.000000 0.158730 0.841270 0.000000 0.000000 0.968254 0.031746 0.000000 0.349206 0.000000 0.650794 0.698413 0.031746 0.190476 0.079365 0.031746 0.380952 0.000000 0.587302 0.047619 0.015873 0.936508 0.000000 0.000000 0.000000 0.936508 0.063492 0.365079 0.000000 0.634921 0.000000 0.000000 0.063492 0.015873 0.920635 0.015873 0.015873 0.873016 0.095238 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRNGRTGYAYGGRTG MEME-3 regular expression -------------------------------------------------------------------------------- [TG][GA][TA]G[GA]TG[TC]A[TC]GG[GA]TG -------------------------------------------------------------------------------- Time 589.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:81891-82301 2.99e-06 19_[-1(9.77e-05)]_12_[+3(4.92e-08)]_\ 25 chrI:109041-109600 2.19e-01 100 chrI:138751-139342 2.67e-01 100 chrI:166171-166985 9.95e-01 100 chrII:6795-7094 7.19e-01 100 chrII:9455-9862 7.36e-05 21_[-1(1.15e-08)]_50 chrII:36233-36856 4.97e-01 100 chrII:44917-45365 4.77e-03 79_[-3(3.05e-06)]_6 chrII:60840-61374 2.34e-02 12_[+3(7.47e-06)]_73 chrII:89269-90014 3.44e-03 13_[+3(2.22e-05)]_72 chrII:165099-165378 3.12e-03 69_[-3(5.79e-06)]_16 chrII:167890-168196 7.03e-02 100 chrII:181313-181676 3.51e-03 51_[-3(3.94e-07)]_34 chrII:197138-197842 5.67e-11 53_[-2(4.51e-15)]_17 chrII:226972-227338 4.31e-05 14_[-1(1.15e-08)]_57 chrII:266209-266735 9.61e-01 100 chrII:326479-327154 1.82e-12 33_[+1(1.77e-10)]_7_[+2(1.03e-08)]_\ 1 chrII:332274-333056 7.61e-01 100 chrII:347407-347932 5.83e-05 30_[-1(1.15e-08)]_41 chrII:350603-350979 9.97e-01 100 chrII:405655-406220 7.17e-06 25_[-1(6.99e-10)]_46 chrII:415495-416186 9.51e-01 100 chrII:477033-477729 6.64e-01 100 chrII:478993-479567 8.73e-01 100 chrII:592883-593276 4.18e-03 35_[+3(7.30e-05)]_2_[+3(1.43e-06)]_\ 33 chrII:604073-606093 9.87e-01 100 chrII:644958-645431 4.06e-08 57_[-1(1.52e-11)]_14 chrII:680367-680666 5.29e-01 100 chrIII:131-1236 2.22e-01 100 chrIII:90782-91109 3.26e-01 100 chrIII:123439-123796 5.92e-16 17_[+1(1.50e-15)]_5_[+2(2.89e-07)]_\ 19 chrIII:127533-127879 8.12e-07 59_[-2(1.69e-10)]_11 chrIII:142418-143015 7.24e-09 42_[+1(8.94e-13)]_29 chrIII:149710-150226 3.43e-03 36_[-1(9.05e-06)]_35 chrIII:151138-151607 5.59e-05 4_[+2(5.32e-09)]_66 chrIII:163447-163894 1.63e-04 23_[+3(3.94e-07)]_62 chrIII:168030-168539 3.89e-01 100 chrIII:178089-178755 2.26e-01 100 chrIII:227753-228195 3.14e-06 17_[-2(3.15e-10)]_53 chrIII:292794-293050 9.98e-01 100 chrIII:295344-295947 5.90e-01 100 chrIII:308566-308963 4.12e-01 100 chrIV:83283-84293 9.11e-01 100 chrIV:117149-118180 8.30e-01 100 chrIV:130101-131003 8.22e-01 100 chrIV:131217-131550 5.17e-02 100 chrIV:216885-218089 9.88e-01 100 chrIV:221610-222369 6.96e-01 100 chrIV:229457-229876 3.45e-03 14_[-3(1.31e-05)]_9_[-3(5.39e-07)]_\ 47 chrIV:308015-308832 7.46e-01 100 chrIV:321623-321968 5.98e-02 54_[-3(2.74e-05)]_31 chrIV:340551-341669 9.64e-01 100 chrIV:358054-358464 1.01e-02 36_[+3(1.94e-06)]_49 chrIV:359166-359787 5.39e-01 100 chrIV:409929-410456 3.12e-01 100 chrIV:411216-411665 2.85e-04 45_[-3(1.43e-06)]_40 chrIV:434051-435065 9.72e-01 100 chrIV:437536-438139 4.05e-05 29_[-1(1.15e-08)]_42 chrIV:488419-488993 1.86e-01 100 chrIV:490511-491264 7.83e-01 100 chrIV:491425-492585 3.74e-01 100 chrIV:519655-519952 5.03e-05 36_[-1(1.15e-08)]_35 chrIV:520111-520498 5.47e-01 100 chrIV:520663-521106 9.66e-01 100 chrIV:538874-539317 3.01e-04 60_[-3(1.21e-07)]_25 chrIV:568711-569350 3.97e-03 18_[-1(2.51e-06)]_53 chrIV:578959-580385 5.67e-01 100 chrIV:580577-580865 3.51e-01 100 chrIV:601225-601496 8.03e-02 100 chrIV:619699-620236 6.85e-06 59_[+1(6.99e-10)]_12 chrIV:667722-668591 4.85e-01 100 chrIV:757476-758394 3.23e-01 100 chrIV:802577-802837 5.23e-02 100 chrIV:835872-837106 4.35e-01 100 chrIV:884268-885439 8.17e-01 100 chrIV:945775-946653 9.30e-01 100 chrIV:992677-993270 4.71e-01 100 chrIV:1013671-1013986 1.05e-01 100 chrIV:1016955-1017526 2.28e-08 24_[+1(1.52e-11)]_47 chrIV:1062645-1063095 4.90e-01 100 chrIV:1075322-1076091 4.97e-01 100 chrIV:1095157-1095716 4.56e-06 45_[+2(1.26e-09)]_25 chrIV:1150702-1151182 2.18e-06 19_[+2(3.15e-10)]_51 chrIV:1175594-1176088 1.02e-05 37_[-2(3.58e-09)]_33 chrIV:1201505-1201983 1.84e-05 55_[-2(5.32e-09)]_15 chrIV:1258962-1259129 4.77e-01 100 chrIV:1259459-1259857 3.09e-01 100 chrIV:1300654-1301342 9.19e-01 100 chrIV:1305005-1305835 8.55e-01 100 chrIV:1351685-1353251 2.22e-07 55_[+1(4.84e-11)]_16 chrIV:1355742-1356030 1.63e-02 23_[+3(8.16e-06)]_62 chrIV:1359173-1360798 8.50e-01 100 chrIV:1400937-1401869 2.56e-02 80_[-3(1.42e-05)]_5 chrIV:1450622-1451217 1.87e-01 100 chrIV:1461047-1461845 9.61e-01 100 chrIX:68060-68930 1.98e-01 100 chrIX:69161-69517 7.47e-01 100 chrIX:99632-100045 4.89e-02 36_[+3(1.53e-05)]_49 chrIX:174703-175368 1.90e-06 45_[-2(1.92e-10)]_25 chrIX:182752-183985 8.57e-01 100 chrIX:197348-198137 5.24e-01 100 chrIX:210666-211216 8.70e-01 100 chrIX:248538-249012 3.81e-02 49_[+3(2.56e-05)]_36 chrIX:254205-254558 1.70e-03 23_[+3(2.76e-06)]_62 chrIX:257359-258000 5.82e-01 100 chrIX:288046-288913 4.52e-01 100 chrIX:299995-300530 9.63e-13 23_[+1(4.84e-11)]_6_[+2(5.32e-09)]_\ 12 chrIX:315868-317615 7.82e-01 100 chrIX:323971-324533 7.42e-01 100 chrIX:325534-326064 1.58e-05 34_[-1(1.51e-09)]_37 chrIX:336096-336868 7.93e-01 100 chrIX:370249-370583 3.60e-01 100 chrIX:380167-380482 5.42e-02 40_[+1(2.04e-05)]_31 chrIX:380662-380835 3.23e-02 72_[+3(1.22e-05)]_13 chrV:6197-6793 8.89e-01 100 chrV:33791-34260 6.72e-01 100 chrV:53493-54313 2.49e-01 100 chrV:61088-62672 6.42e-09 67_[+1(8.94e-13)]_4 chrV:85113-85447 3.49e-05 41_[-3(2.94e-05)]_14_[-3(9.62e-08)]_\ 15 chrV:85769-86256 3.13e-01 100 chrV:86431-87004 9.90e-01 100 chrV:99859-100279 9.73e-01 100 chrV:117467-118302 1.12e-01 100 chrV:130833-131390 7.52e-11 28_[+1(1.15e-11)]_5_[+2(2.20e-06)]_\ 8 chrV:135178-136172 8.29e-01 100 chrV:138484-139978 6.43e-02 100 chrV:140173-140912 6.93e-01 100 chrV:176873-177441 1.30e-07 26_[-1(1.52e-11)]_45 chrV:207366-208085 4.93e-01 100 chrV:249387-250526 3.26e-01 100 chrV:270390-270974 3.01e-01 100 chrV:288142-288736 5.34e-04 61_[+1(1.12e-07)]_10 chrV:305812-306909 2.02e-01 100 chrV:311740-312295 1.20e-07 63_[+1(2.26e-11)]_8 chrV:354796-355342 8.92e-03 2_[+3(2.22e-05)]_83 chrV:362046-362488 7.84e-01 100 chrV:396139-397921 1.04e-01 100 chrV:423086-424287 6.08e-01 100 chrV:431029-432044 8.39e-01 100 chrV:434411-435142 6.58e-01 100 chrV:435358-435940 4.41e-01 100 chrV:438470-438991 1.63e-14 19_[-2(3.80e-11)]_7_[-1(3.77e-11)]_\ 15 chrV:441777-442669 3.31e-01 100 chrV:443055-443340 1.83e-08 62_[+1(2.26e-11)]_9 chrV:469219-469684 3.12e-07 55_[-2(3.80e-11)]_15 chrV:486952-487636 9.93e-01 100 chrV:550931-551827 4.37e-01 100 chrVI:4530-4758 6.34e-01 100 chrVI:64216-65423 5.12e-01 100 chrVI:95466-95901 2.06e-01 100 chrVI:101376-101808 9.98e-01 100 chrVI:137291-137814 8.12e-07 27_[+2(1.69e-10)]_43 chrVI:157901-158270 5.00e-01 100 chrVI:162036-162395 2.15e-05 62_[-2(2.64e-09)]_8 chrVI:167245-167683 6.33e-04 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chrXVI:769025-769482 9.84e-12 11_[+1(1.14e-09)]_29_[+2(4.37e-09)]_\ 1 chrXVI:775672-776156 6.39e-01 100 chrXVI:794457-796219 4.02e-01 100 chrXVI:810572-811247 7.87e-01 100 chrXVI:819325-819939 6.67e-01 100 chrXVI:856802-857099 2.58e-13 1_[-2(5.05e-11)]_6_[-1(1.14e-09)]_\ 34 chrXVI:859049-859919 3.87e-01 100 chrXVI:860132-860666 3.00e-14 29_[-2(2.64e-09)]_4_[-1(8.94e-13)]_\ 8 chrXVI:879450-880549 6.00e-02 63_[-2(3.59e-05)]_7 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************