******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--GAL11/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:392467-394771 1.0000 100 chrVIII:381275-383383 1.0000 100 chrXV:92712-94800 1.0000 100 chrVII:343897-346620 1.0000 100 chrXI:282560-284247 1.0000 100 chrI:166178-166640 1.0000 100 chrIV:1466566-1468485 1.0000 100 chrXVI:794432-796110 1.0000 100 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chrXI:382184-382478 1.0000 100 chrVII:609330-610271 1.0000 100 chrIV:1236463-1238007 1.0000 100 chrXII:374211-374681 1.0000 100 chrXII:673515-675282 1.0000 100 chrXIV:229520-230748 1.0000 100 chrX:443379-443479 1.0000 100 chrIV:884894-886450 1.0000 100 chrII:234656-237312 1.0000 100 chrIV:836497-836743 1.0000 100 chrVII:877739-879126 1.0000 100 chrXII:592369-592719 1.0000 100 chrIV:358036-358439 1.0000 100 chrX:525880-525980 1.0000 100 chrXIV:374684-375094 1.0000 100 chrVII:705482-707183 1.0000 100 chrXV:841580-842958 1.0000 100 chrVII:185192-185932 1.0000 100 chrVIII:475465-475911 1.0000 100 chrIV:229480-230693 1.0000 100 chrXV:353854-354323 1.0000 100 chrXV:710080-710564 1.0000 100 chrIV:1079303-1080931 1.0000 100 chrIV:359208-359794 1.0000 100 chrXV:978569-979357 1.0000 100 chrXI:258040-258243 1.0000 100 chrVII:541719-542181 1.0000 100 chrXV:854018-854779 1.0000 100 chrVII:95200-96516 1.0000 100 chrXVI:502718-503215 1.0000 100 chrXI:219504-220102 1.0000 100 chrXII:962824-963345 1.0000 100 chrVII:738694-739374 1.0000 100 chrVII:515987-517548 1.0000 100 chrVI:157904-158500 1.0000 100 chrV:207398-208101 1.0000 100 chrX:540737-540837 1.0000 100 chrXIII:300835-303173 1.0000 100 chrII:444745-445267 1.0000 100 chrXV:1027504-1029147 1.0000 100 chrX:617663-617763 1.0000 100 chrX:542772-542872 1.0000 100 chrXVI:731599-732367 1.0000 100 chrV:176870-177469 1.0000 100 chrII:44938-46630 1.0000 100 chrXII:818507-820332 1.0000 100 chrIV:1278680-1279035 1.0000 100 chrX:651904-652004 1.0000 100 chrIV:945696-946630 1.0000 100 chrV:85044-86794 1.0000 100 chrXIV:173719-174672 1.0000 100 chrXI:158204-159643 1.0000 100 chrXII:921700-922640 1.0000 100 chrXVI:820998-822325 1.0000 100 chrXIV:575087-577427 1.0000 100 chrXV:877695-878060 1.0000 100 chrIX:248616-249472 1.0000 100 chrXVI:192992-193924 1.0000 100 chrV:99807-100283 1.0000 100 chrXV:167948-168513 1.0000 100 chrXIV:104596-105155 1.0000 100 chrXVI:296981-298260 1.0000 100 chrXVI:40367-40643 1.0000 100 chrXIII:759018-759560 1.0000 100 chrXI:518639-521015 1.0000 100 chrXV:407638-408247 1.0000 100 chrX:391827-391927 1.0000 100 chrXIV:493884-495625 1.0000 100 chrIV:321625-321933 1.0000 100 chrVII:736191-736883 1.0000 100 chrX:355200-355300 1.0000 100 chrI:71642-73651 1.0000 100 chrIX:325510-326092 1.0000 100 chrXV:300842-301601 1.0000 100 chrXVI:689369-689896 1.0000 100 chrVII:786793-788763 1.0000 100 chrVII:766187-766410 1.0000 100 chrVII:411883-412587 1.0000 100 chrX:390910-391010 1.0000 100 chrXVI:280557-282940 1.0000 100 chrIV:519665-519953 1.0000 100 chrXII:232045-234865 1.0000 100 chrX:115389-115489 1.0000 100 chrIV:1461114-1461823 1.0000 100 chrXI:411239-415306 1.0000 100 chrII:9461-9997 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--GAL11/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--GAL11/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--GAL11/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.304 C 0.196 G 0.196 T 0.304 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--GAL11/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF RAGGTCVBSGGTTCGADYCCS MEME-1 width = 21 sites = 66 llr = 1047 E-value = 3.8e-163 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGGTCVBSGGTTCGADYCCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 46131:4112::::2a2::1: pos.-specific C :12119443::::a::24a75 probability G 53662:2257a:::8:2:::3 matrix T 1:1161:311:aa:::46:21 bits 2.4 2.2 * * * 1.9 * * * 1.7 * **** * * Relative 1.4 * ****** * Entropy 1.2 * ****** * (22.9 bits) 1.0 * ******* **** 0.7 *** * ******** **** 0.5 **** *********** **** 0.2 **************** **** 0.0 --------------------- Multilevel GAGGTCCCGGGTTCGATTCCC consensus AGCA ATC AC TG sequence GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCVBSGGTTCGADYCCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631734-631998 - 40 5.72e-14 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrV:311787-312313 - 33 2.31e-11 TTGCAAGGAA GAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrXII:214680-215061 - 73 2.31e-11 CAAGGAA GAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrV:443066-443342 - 58 2.26e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXVI:819327-819822 + 48 2.26e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXIV:96015-96467 - 60 6.51e-10 CTTCCAAGGT GGGGACACGGGTTCGATTCTC GTACCGCTCA chrVIII:388682-389210 - 7 6.51e-10 AAGCATGCGA GAGGCCCTGGGTTCAATTCCC AGCTCG chrVIII:475465-475911 - 78 7.44e-10 CA AAGGTCCCGAGTTCGATCCTC GGTTGGAACA chrXVI:581792-582439 + 39 7.44e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXIII:480381-480895 - 43 7.44e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrX:414702-414802 + 72 7.44e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGG chrIX:299990-300518 - 34 7.44e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIII:151051-151590 - 24 7.44e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:774129-774610 + 72 9.93e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GACTCGTC chrXII:875195-875661 + 63 1.13e-09 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXI:578731-579407 + 11 1.13e-09 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrV:176870-177469 + 21 1.29e-09 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrII:644906-645455 + 78 1.29e-09 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CG chrIX:197345-197916 + 53 1.29e-09 TTCTCACCGT GGAGACCGGGGTTCGACTCCC CGCTTCGGAG chrXIII:290490-291147 + 74 1.29e-09 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATC chrV:486987-487671 - 62 1.29e-09 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrX:531582-531682 + 35 1.91e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrVIII:134059-134659 + 53 1.91e-09 TTTTGATCCG GACAACCCCGGTTCGAATCCG GGTAGGACCT chrXV:281776-282713 + 10 1.91e-09 TGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrIV:83306-83832 + 69 1.91e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXVI:860140-860645 + 77 1.91e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGC chrIII:168078-168561 - 42 1.91e-09 TTTTGATCCG GACAACCCCGGTTCGAATCCG GGTAGGACCT chrVII:930828-931154 - 22 1.91e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrIX:325510-326092 + 39 4.08e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXIV:104596-105155 + 22 4.08e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXV:353854-354323 - 13 4.08e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:174709-175531 + 3 4.08e-09 TG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrII:266184-266719 + 19 4.08e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrV:130862-131378 - 22 4.59e-09 TTTTGATCCG AACAACCCCGGTTCGAATCCG GGTAAGACCT chrX:374201-374301 - 33 5.80e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrII:405651-406217 + 35 5.80e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:823348-823713 + 45 6.53e-09 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXIII:420374-420857 - 33 6.53e-09 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXIII:586399-586906 - 44 6.53e-09 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXIII:372186-372769 - 28 6.53e-09 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrVIII:237696-238082 - 19 1.02e-08 AAGTTATCTG GAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrIV:1095140-1095695 - 13 1.02e-08 AAGATATCTG GAGGTCCTGTGTTCGATCCAC AGAGTTCGCA chrXVI:622310-622858 - 16 1.02e-08 AAGTTATCTG GAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrXVI:559941-560467 - 54 1.02e-08 AAGTTATCTG GAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrIV:884292-884652 + 41 1.13e-08 AAGCAACGCG ACCGTCGTGGGTTCAAACCCC ACCTCGAGCA chrXIII:837695-838217 + 80 8.16e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGC chrVI:210418-210911 - 15 8.16e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrXII:592369-592719 - 35 9.76e-08 TGATATCTTC GGATGCAAGGGTTCGAATCCC TTAGCTCTCA chrVI:137239-137810 - 22 9.76e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXVI:810581-810892 + 33 9.76e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXII:732013-732317 + 45 9.76e-08 TGATATCTTC GGATGCAAGGGTTCGAATCCC TTAGCTCTCA chrVII:730941-731462 + 29 9.76e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrVIII:132793-133347 - 16 1.92e-07 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrXII:167729-168272 - 4 1.92e-07 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GCA chrIV:1305128-1306239 + 49 1.92e-07 TTGGGCTTTG GCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrII:226985-227363 + 2 1.92e-07 T GCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrXVI:744051-744601 + 49 2.64e-07 TTGTAATGCA AAGGTCGTTAGTTCAATTCTG ACAGGTGGCA chrXII:374211-374681 + 1 3.09e-07 . AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrXV:274470-275016 + 50 4.86e-07 ATTGGGTTTT ACCTGCGCAGGTTCGAATCCT GTCTGTGACG chrXVI:689369-689896 + 34 1.13e-06 GTTGGGCTCT GCCCGCGCTGGTTCAAATCCT GCTGGTGTCG chrVII:422840-423526 + 42 2.01e-06 AGGTATCGTA AGATGCAAGAGTTCGAATCTC TTAGCAACCA chrVII:857170-857662 - 22 2.01e-06 AGGTATCGTA AGATGCAAGAGTTCGAATCTC TTAGCAACCA chrIX:316100-318273 + 59 9.65e-06 TAACCAAAGA AAGGGTGCTGGTTCTATCTTC ACCTCTCACA chrX:195396-195496 + 37 1.24e-05 GACGAAGGCT AAGGTCACTTCTTCGTTTCCT TTATTGGGGT chrXVI:66587-67471 + 21 1.73e-05 GTCAGATCAA CATTTCGCAGGTTAGATCCTC AAAAAGGGCC chrX:542772-542872 - 22 5.55e-05 AGCTGGTCAT GATGTCGCTATTTCTAATTCC GTTGAAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCVBSGGTTCGADYCCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631734-631998 5.7e-14 39_[-1]_40 chrV:311787-312313 2.3e-11 32_[-1]_47 chrXII:214680-215061 2.3e-11 72_[-1]_7 chrV:443066-443342 2.3e-10 57_[-1]_22 chrXVI:819327-819822 2.3e-10 47_[+1]_32 chrXIV:96015-96467 6.5e-10 59_[-1]_20 chrVIII:388682-389210 6.5e-10 6_[-1]_73 chrVIII:475465-475911 7.4e-10 77_[-1]_2 chrXVI:581792-582439 7.4e-10 38_[+1]_41 chrXIII:480381-480895 7.4e-10 42_[-1]_37 chrX:414702-414802 7.4e-10 71_[+1]_8 chrIX:299990-300518 7.4e-10 33_[-1]_46 chrIII:151051-151590 7.4e-10 23_[-1]_56 chrVII:774129-774610 9.9e-10 71_[+1]_8 chrXII:875195-875661 1.1e-09 62_[+1]_17 chrXI:578731-579407 1.1e-09 10_[+1]_69 chrV:176870-177469 1.3e-09 20_[+1]_59 chrII:644906-645455 1.3e-09 77_[+1]_2 chrIX:197345-197916 1.3e-09 52_[+1]_27 chrXIII:290490-291147 1.3e-09 73_[+1]_6 chrV:486987-487671 1.3e-09 61_[-1]_18 chrX:531582-531682 1.9e-09 34_[+1]_45 chrVIII:134059-134659 1.9e-09 52_[+1]_27 chrXV:281776-282713 1.9e-09 9_[+1]_70 chrIV:83306-83832 1.9e-09 68_[+1]_11 chrXVI:860140-860645 1.9e-09 76_[+1]_3 chrIII:168078-168561 1.9e-09 41_[-1]_38 chrVII:930828-931154 1.9e-09 21_[-1]_58 chrIX:325510-326092 4.1e-09 38_[+1]_41 chrXIV:104596-105155 4.1e-09 21_[+1]_58 chrXV:353854-354323 4.1e-09 12_[-1]_67 chrIX:174709-175531 4.1e-09 2_[+1]_77 chrII:266184-266719 4.1e-09 18_[+1]_61 chrV:130862-131378 4.6e-09 21_[-1]_58 chrX:374201-374301 5.8e-09 32_[-1]_47 chrII:405651-406217 5.8e-09 34_[+1]_45 chrVII:823348-823713 6.5e-09 44_[+1]_35 chrXIII:420374-420857 6.5e-09 32_[-1]_47 chrXIII:586399-586906 6.5e-09 43_[-1]_36 chrXIII:372186-372769 6.5e-09 27_[-1]_52 chrVIII:237696-238082 1e-08 18_[-1]_61 chrIV:1095140-1095695 1e-08 12_[-1]_67 chrXVI:622310-622858 1e-08 15_[-1]_64 chrXVI:559941-560467 1e-08 53_[-1]_26 chrIV:884292-884652 1.1e-08 40_[+1]_39 chrXIII:837695-838217 8.2e-08 79_[+1] chrVI:210418-210911 8.2e-08 14_[-1]_65 chrXII:592369-592719 9.8e-08 34_[-1]_45 chrVI:137239-137810 9.8e-08 21_[-1]_58 chrXVI:810581-810892 9.8e-08 32_[+1]_47 chrXII:732013-732317 9.8e-08 44_[+1]_35 chrVII:730941-731462 9.8e-08 28_[+1]_51 chrVIII:132793-133347 1.9e-07 15_[-1]_64 chrXII:167729-168272 1.9e-07 3_[-1]_76 chrIV:1305128-1306239 1.9e-07 48_[+1]_31 chrII:226985-227363 1.9e-07 1_[+1]_78 chrXVI:744051-744601 2.6e-07 48_[+1]_31 chrXII:374211-374681 3.1e-07 [+1]_79 chrXV:274470-275016 4.9e-07 49_[+1]_30 chrXVI:689369-689896 1.1e-06 33_[+1]_46 chrVII:422840-423526 2e-06 41_[+1]_38 chrVII:857170-857662 2e-06 21_[-1]_58 chrIX:316100-318273 9.7e-06 58_[+1]_21 chrX:195396-195496 1.2e-05 36_[+1]_43 chrXVI:66587-67471 1.7e-05 20_[+1]_59 chrX:542772-542872 5.6e-05 21_[-1]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCVBSGGTTCGADYCCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGGTCVBSGGTTCGADYCCS width=21 seqs=66 chrXIV:631734-631998 ( 40) GAGGTCCCGGGTTCGAGTCCC 1 chrV:311787-312313 ( 33) GAGGTCATCGGTTCGATTCCG 1 chrXII:214680-215061 ( 73) GAGGTCATCGGTTCGATTCCG 1 chrV:443066-443342 ( 58) GGGATCAGCGGTTCGATCCCG 1 chrXVI:819327-819822 ( 48) GGGATCAGCGGTTCGATCCCG 1 chrXIV:96015-96467 ( 60) GGGGACACGGGTTCGATTCTC 1 chrVIII:388682-389210 ( 7) GAGGCCCTGGGTTCAATTCCC 1 chrVIII:475465-475911 ( 78) AAGGTCCCGAGTTCGATCCTC 1 chrXVI:581792-582439 ( 39) AAGGTTAGGGGTTCGAGCCCC 1 chrXIII:480381-480895 ( 43) AAGGTTAGGGGTTCGAGCCCC 1 chrX:414702-414802 ( 72) AAGGTTAGGGGTTCGAGCCCC 1 chrIX:299990-300518 ( 34) AAGGTTAGGGGTTCGAGCCCC 1 chrIII:151051-151590 ( 24) AAGGTTAGGGGTTCGAGCCCC 1 chrVII:774129-774610 ( 72) GAGGTCTCCGGTTCGATTCCG 1 chrXII:875195-875661 ( 63) AATGTCAGGGGTTCGAGCCCC 1 chrXI:578731-579407 ( 11) AATGTCAGGGGTTCGAGCCCC 1 chrV:176870-177469 ( 21) GGAGACCGGGGTTCGACTCCC 1 chrII:644906-645455 ( 78) GGAGACCGGGGTTCGACTCCC 1 chrIX:197345-197916 ( 53) GGAGACCGGGGTTCGACTCCC 1 chrXIII:290490-291147 ( 74) GGAGACCGGGGTTCGACTCCC 1 chrV:486987-487671 ( 62) GGAGACCGGGGTTCGACTCCC 1 chrX:531582-531682 ( 35) TGGGCCCCCGGTTCGATTCCG 1 chrVIII:134059-134659 ( 53) GACAACCCCGGTTCGAATCCG 1 chrXV:281776-282713 ( 10) TGGGCCCCCGGTTCGATTCCG 1 chrIV:83306-83832 ( 69) TGGGCCCCCGGTTCGATTCCG 1 chrXVI:860140-860645 ( 77) TGGGCCCCCGGTTCGATTCCG 1 chrIII:168078-168561 ( 42) GACAACCCCGGTTCGAATCCG 1 chrVII:930828-931154 ( 22) TGGGCCCCCGGTTCGATTCCG 1 chrIX:325510-326092 ( 39) GAGATCATCGGTTCAAATCCG 1 chrXIV:104596-105155 ( 22) GAGATCATCGGTTCAAATCCG 1 chrXV:353854-354323 ( 13) GAGATCATCGGTTCAAATCCG 1 chrIX:174709-175531 ( 3) GAGATCATCGGTTCAAATCCG 1 chrII:266184-266719 ( 19) GAGATCATCGGTTCAAATCCG 1 chrV:130862-131378 ( 22) AACAACCCCGGTTCGAATCCG 1 chrX:374201-374301 ( 33) AAGATTATGGGTTCGACCCCC 1 chrII:405651-406217 ( 35) AAGATTATGGGTTCGACCCCC 1 chrVII:823348-823713 ( 45) AACGTCCCCAGTTCGATCCTG 1 chrXIII:420374-420857 ( 33) AACGTCCCCAGTTCGATCCTG 1 chrXIII:586399-586906 ( 44) AACGTCCCCAGTTCGATCCTG 1 chrXIII:372186-372769 ( 28) AACGTCCCCAGTTCGATCCTG 1 chrVIII:237696-238082 ( 19) GAGGTCCTGTGTTCGATCCAC 1 chrIV:1095140-1095695 ( 13) GAGGTCCTGTGTTCGATCCAC 1 chrXVI:622310-622858 ( 16) GAGGTCCTGTGTTCGATCCAC 1 chrXVI:559941-560467 ( 54) GAGGTCCTGTGTTCGATCCAC 1 chrIV:884292-884652 ( 41) ACCGTCGTGGGTTCAAACCCC 1 chrXIII:837695-838217 ( 80) GAGATCGGGCGTTCGACTCGC 1 chrVI:210418-210911 ( 15) GAGATCGGGCGTTCGACTCGC 1 chrXII:592369-592719 ( 35) GGATGCAAGGGTTCGAATCCC 1 chrVI:137239-137810 ( 22) AAGATCGTGAGTTCAACCCTC 1 chrXVI:810581-810892 ( 33) AAGATCGTGAGTTCAACCCTC 1 chrXII:732013-732317 ( 45) GGATGCAAGGGTTCGAATCCC 1 chrVII:730941-731462 ( 29) AAGATCGTGAGTTCAACCCTC 1 chrVIII:132793-133347 ( 16) GCCCGCGCAGGTTCGAGTCCT 1 chrXII:167729-168272 ( 4) GCCCGCGCAGGTTCGAGTCCT 1 chrIV:1305128-1306239 ( 49) GCCCGCGCAGGTTCGAGTCCT 1 chrII:226985-227363 ( 2) GCCCGCGCAGGTTCGAGTCCT 1 chrXVI:744051-744601 ( 49) AAGGTCGTTAGTTCAATTCTG 1 chrXII:374211-374681 ( 1) AAGATTCCAGGTTCAAGTCCT 1 chrXV:274470-275016 ( 50) ACCTGCGCAGGTTCGAATCCT 1 chrXVI:689369-689896 ( 34) GCCCGCGCTGGTTCAAATCCT 1 chrVII:422840-423526 ( 42) AGATGCAAGAGTTCGAATCTC 1 chrVII:857170-857662 ( 22) AGATGCAAGAGTTCGAATCTC 1 chrIX:316100-318273 ( 59) AAGGGTGCTGGTTCTATCTTC 1 chrX:195396-195496 ( 37) AAGGTCACTTCTTCGTTTCCT 1 chrXVI:66587-67471 ( 21) CATTTCGCAGGTTAGATCCTC 1 chrX:542772-542872 ( 22) GATGTCGCTATTTCTAATTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCVBSGGTTCGADYCCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 6.58982 E= 3.8e-163 35 -365 144 -203 104 -84 44 -1269 -118 16 164 -235 -19 -133 156 -177 -118 -106 -19 97 -1269 219 -1269 -118 23 100 35 -435 -235 111 35 -11 -155 81 135 -203 -77 -265 191 -203 -1269 -365 235 -435 -1269 -1269 -1269 169 -1269 -1269 -1269 169 -435 237 -1269 -1269 -65 -1269 202 -335 167 -1269 -1269 -435 -36 -6 5 29 -1269 105 -1269 97 -1269 235 -1269 -335 -235 188 -265 -55 -1269 148 88 -135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCVBSGGTTCGADYCCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 66 E= 3.8e-163 0.393939 0.015152 0.515152 0.075758 0.636364 0.106061 0.257576 0.000000 0.136364 0.212121 0.590909 0.060606 0.272727 0.075758 0.560606 0.090909 0.136364 0.090909 0.166667 0.606061 0.000000 0.863636 0.000000 0.136364 0.363636 0.378788 0.242424 0.015152 0.060606 0.409091 0.242424 0.287879 0.106061 0.333333 0.484848 0.075758 0.181818 0.030303 0.712121 0.075758 0.000000 0.015152 0.969697 0.015152 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.015152 0.984848 0.000000 0.000000 0.196970 0.000000 0.772727 0.030303 0.984848 0.000000 0.000000 0.015152 0.242424 0.181818 0.196970 0.378788 0.000000 0.393939 0.000000 0.606061 0.000000 0.969697 0.000000 0.030303 0.060606 0.696970 0.030303 0.212121 0.000000 0.530303 0.348485 0.121212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCVBSGGTTCGADYCCS MEME-1 regular expression -------------------------------------------------------------------------------- [GA][AG][GC][GA]TC[CAG][CTG][GC]GGTTCGA[TA][TC]C[CT][CG] -------------------------------------------------------------------------------- Time 355.70 secs. ******************************************************************************** ******************************************************************************** MOTIF BTTGGCCSAGTBGGTWRAGSSNHMGRCT MEME-2 width = 28 sites = 46 llr = 930 E-value = 2.1e-165 ******************************************************************************** -------------------------------------------------------------------------------- Motif BTTGGCCSAGTBGGTWRAGSSNHMGRCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:2:::1a2:::::665:::324152: pos.-specific C 4::::965:::3::1::2:642441:62 probability G 22:8a:23:8:3a71:42a46211641: matrix T 36a::121::a4:374:1:::3322118 bits 2.4 * * * 2.2 * * * 1.9 ** * * 1.7 * ** ** * * Relative 1.4 **** *** * ** Entropy 1.2 **** *** ** *** * (29.2 bits) 1.0 ***** *** ** * *** * 0.7 ***** *** ** ** *** * ** 0.5 *********** ***** *** * ** 0.2 ********************* ****** 0.0 ---------------------------- Multilevel CTTGGCCCAGTTGGTAAAGCGACCGACT consensus TG A TG G T TGG GCTTA G sequence G C CA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTGGCCSAGTBGGTWRAGSSNHMGRCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrXII:875195-875661 + 3 2.30e-12 TT GTTAGCTCAGTTGGTAGAGCGTTCGGCT TTTAAGCGCA chrVII:115219-115755 + 56 2.30e-12 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCGTTCGGCT TTTAAGCGCA chrXIV:374684-375094 + 35 3.65e-12 AATAAGCGGA CTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAC chrV:288153-288788 - 72 3.65e-12 C TATGGCCGAGTGGTTAAGGCGACAGACT TGAAATCTGT chrIV:1095140-1095695 - 62 3.65e-12 TGTTAGCGGA CTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrVIII:132793-133347 - 55 1.01e-11 TAAGTGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATT AGAAATCTTT chrXII:167729-168272 - 43 1.01e-11 CATATGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATT AGAAATCTTT chrIV:437546-438026 + 41 1.01e-11 AGTAAGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATT AGAAATCTTT chrIV:1305128-1306239 + 2 1.01e-11 A CTTGGCCGAGTGGTTAAGGCGAAAGATT AGAAATCTTT chrXIII:259012-259492 - 5 1.01e-11 AGTATGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATT AGAA chrVII:440292-441332 - 13 1.33e-11 TATATGCGGA TTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrXIV:602075-602541 + 59 1.33e-11 ACAATGGTCT CTTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrIX:183282-183721 - 30 1.33e-11 TTCCTGGTCT CTTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrXVI:819327-819822 + 10 1.33e-11 GAATGGTCT CTTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrVIII:237696-238082 - 68 1.33e-11 GCGGA TTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrII:197150-197838 + 55 1.33e-11 ATCAAGGTCT CTTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrXVI:622310-622858 - 65 1.33e-11 TATGCGGA TTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrVIII:358287-358814 - 37 1.33e-11 AGTAAGCGGA TTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrIII:227721-228220 + 27 4.24e-11 GAAATGGCAC TATGGCCGAGTGGTTAAGGCGAGAGACT CGAATGGAAT chrXVI:581792-582439 + 2 6.85e-11 T GTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrXIII:480381-480895 - 73 6.85e-11 . GTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrX:414702-414802 + 35 6.85e-11 AATTAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrIX:299990-300518 - 64 6.85e-11 AATAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrVII:122000-122531 + 59 6.85e-11 AATTAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrIII:151051-151590 - 54 6.85e-11 AAAGAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrIX:325510-326092 + 2 7.70e-11 C TATGGCCAAGTTGGTAAGGCGCCACACT AGTAATGTGG chrXV:353854-354323 - 43 7.70e-11 TTACTGCTTC TATGGCCAAGTTGGTAAGGCGCCACACT AGTAATGTGG chrV:311787-312313 - 63 3.49e-10 ATTCTGGGCA CATGGCGCAGTTGGTAGCGCGCTTCCCT TGCAAGGAAG chrX:617663-617763 + 59 6.26e-10 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGCGTCAGAT TTAGGTGGAT chrXI:490730-491312 + 2 6.87e-10 T CGTGGCCCAATGGTCACGGCGTCTGGCT ACGAACCAGA chrVII:823348-823713 + 7 1.66e-09 TGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrV:469230-469703 + 46 1.66e-09 TAATTGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrXIII:420374-420857 - 64 1.66e-09 AACAGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrXI:379472-379910 + 44 1.66e-09 TAATAGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrXIII:372186-372769 - 59 1.66e-09 AACCTGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrVII:774129-774610 + 35 2.71e-09 TAATTGGGCG TGTGGCGTAGTCGGTAGCGCGCTCCCTT AGCATGGGAG chrXIII:504651-505218 + 16 4.29e-09 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGCGCCTGAT TCAAGAAATA chrXII:628125-628633 + 59 4.29e-09 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGCGCCTGAT TCAAGAAAAT chrXI:83998-84432 + 48 7.08e-09 TGTATGGAGG GTTGGCCGAGTGGTCTAAGGCGGCAGAC TTAAGATCTG chrX:424290-424390 - 21 7.08e-09 AAGATGGAGG GTTGGCCGAGTGGTCTAAGGCGGCAGAC TTAAGATCTG chrVI:137239-137810 - 53 8.11e-09 TGACTGACTC CATGGCCAAGTTGGTTAAGGCGTGCGAC TGTTAATCGC chrXI:74413-74811 + 67 8.11e-09 AATTAGACTC CATGGCCAAGTTGGTTAAGGCGTGCGAC TGTTAA chrXII:605160-605650 - 45 9.27e-09 AAAATGCTCG TGTAGCTCAGTGGTTAGAGCTTCGTGCT TATAGCAACA chrVII:700181-701154 + 63 1.20e-08 GAATTGGTAC TCTGGCCGAGTGGTCTAAGGCGTCAGGT CGAGGTCCTG chrX:390910-391010 - 16 1.54e-08 ATAGTGCTTC AGTAGCTCAGTAGGAAGAGCGTCAGTCT CATAATCTGA chrIV:1175576-1176057 + 68 1.54e-08 ACAAAGCTTC AGTAGCTCAGTAGGAAGAGCGTCAGTCT CATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTGGCCSAGTBGGTWRAGSSNHMGRCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:875195-875661 2.3e-12 2_[+2]_70 chrVII:115219-115755 2.3e-12 55_[+2]_17 chrXIV:374684-375094 3.7e-12 34_[+2]_38 chrV:288153-288788 3.7e-12 71_[-2]_1 chrIV:1095140-1095695 3.7e-12 61_[-2]_11 chrVIII:132793-133347 1e-11 54_[-2]_18 chrXII:167729-168272 1e-11 42_[-2]_30 chrIV:437546-438026 1e-11 40_[+2]_32 chrIV:1305128-1306239 1e-11 1_[+2]_71 chrXIII:259012-259492 1e-11 4_[-2]_68 chrVII:440292-441332 1.3e-11 12_[-2]_60 chrXIV:602075-602541 1.3e-11 58_[+2]_14 chrIX:183282-183721 1.3e-11 29_[-2]_43 chrXVI:819327-819822 1.3e-11 9_[+2]_63 chrVIII:237696-238082 1.3e-11 67_[-2]_5 chrII:197150-197838 1.3e-11 54_[+2]_18 chrXVI:622310-622858 1.3e-11 64_[-2]_8 chrVIII:358287-358814 1.3e-11 36_[-2]_36 chrIII:227721-228220 4.2e-11 26_[+2]_46 chrXVI:581792-582439 6.8e-11 1_[+2]_71 chrXIII:480381-480895 6.8e-11 72_[-2] chrX:414702-414802 6.8e-11 34_[+2]_38 chrIX:299990-300518 6.8e-11 63_[-2]_9 chrVII:122000-122531 6.8e-11 58_[+2]_14 chrIII:151051-151590 6.8e-11 53_[-2]_19 chrIX:325510-326092 7.7e-11 1_[+2]_71 chrXV:353854-354323 7.7e-11 42_[-2]_30 chrV:311787-312313 3.5e-10 62_[-2]_10 chrX:617663-617763 6.3e-10 58_[+2]_14 chrXI:490730-491312 6.9e-10 1_[+2]_71 chrVII:823348-823713 1.7e-09 6_[+2]_66 chrV:469230-469703 1.7e-09 45_[+2]_27 chrXIII:420374-420857 1.7e-09 63_[-2]_9 chrXI:379472-379910 1.7e-09 43_[+2]_29 chrXIII:372186-372769 1.7e-09 58_[-2]_14 chrVII:774129-774610 2.7e-09 34_[+2]_38 chrXIII:504651-505218 4.3e-09 15_[+2]_57 chrXII:628125-628633 4.3e-09 58_[+2]_14 chrXI:83998-84432 7.1e-09 47_[+2]_25 chrX:424290-424390 7.1e-09 20_[-2]_52 chrVI:137239-137810 8.1e-09 52_[-2]_20 chrXI:74413-74811 8.1e-09 66_[+2]_6 chrXII:605160-605650 9.3e-09 44_[-2]_28 chrVII:700181-701154 1.2e-08 62_[+2]_10 chrX:390910-391010 1.5e-08 15_[-2]_57 chrIV:1175576-1176057 1.5e-08 67_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTGGCCSAGTBGGTWRAGSSNHMGRCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BTTGGCCSAGTBGGTWRAGSSNHMGRCT width=28 seqs=46 chrXII:875195-875661 ( 3) GTTAGCTCAGTTGGTAGAGCGTTCGGCT 1 chrVII:115219-115755 ( 56) GTTAGCTCAGTTGGTAGAGCGTTCGGCT 1 chrXIV:374684-375094 ( 35) CTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrV:288153-288788 ( 72) TATGGCCGAGTGGTTAAGGCGACAGACT 1 chrIV:1095140-1095695 ( 62) CTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrVIII:132793-133347 ( 55) CTTGGCCGAGTGGTTAAGGCGAAAGATT 1 chrXII:167729-168272 ( 43) CTTGGCCGAGTGGTTAAGGCGAAAGATT 1 chrIV:437546-438026 ( 41) CTTGGCCGAGTGGTTAAGGCGAAAGATT 1 chrIV:1305128-1306239 ( 2) CTTGGCCGAGTGGTTAAGGCGAAAGATT 1 chrXIII:259012-259492 ( 5) CTTGGCCGAGTGGTTAAGGCGAAAGATT 1 chrVII:440292-441332 ( 13) TTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrXIV:602075-602541 ( 59) CTTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrIX:183282-183721 ( 30) CTTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrXVI:819327-819822 ( 10) CTTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrVIII:237696-238082 ( 68) TTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrII:197150-197838 ( 55) CTTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrXVI:622310-622858 ( 65) TTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrVIII:358287-358814 ( 37) TTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrIII:227721-228220 ( 27) TATGGCCGAGTGGTTAAGGCGAGAGACT 1 chrXVI:581792-582439 ( 2) GTTGGCGCAATCGGTAGCGCGTATGACT 1 chrXIII:480381-480895 ( 73) GTTGGCGCAATCGGTAGCGCGTATGACT 1 chrX:414702-414802 ( 35) GTTGGCGCAATCGGTAGCGCGTATGACT 1 chrIX:299990-300518 ( 64) GTTGGCGCAATCGGTAGCGCGTATGACT 1 chrVII:122000-122531 ( 59) GTTGGCGCAATCGGTAGCGCGTATGACT 1 chrIII:151051-151590 ( 54) GTTGGCGCAATCGGTAGCGCGTATGACT 1 chrIX:325510-326092 ( 2) TATGGCCAAGTTGGTAAGGCGCCACACT 1 chrXV:353854-354323 ( 43) TATGGCCAAGTTGGTAAGGCGCCACACT 1 chrV:311787-312313 ( 63) CATGGCGCAGTTGGTAGCGCGCTTCCCT 1 chrX:617663-617763 ( 59) TTTGGCCGAGTGGTTTAAGGCGTCAGAT 1 chrXI:490730-491312 ( 2) CGTGGCCCAATGGTCACGGCGTCTGGCT 1 chrVII:823348-823713 ( 7) CGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrV:469230-469703 ( 46) CGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrXIII:420374-420857 ( 64) CGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrXI:379472-379910 ( 44) CGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrXIII:372186-372769 ( 59) CGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrVII:774129-774610 ( 35) TGTGGCGTAGTCGGTAGCGCGCTCCCTT 1 chrXIII:504651-505218 ( 16) TTTGGCCGAGCGGTCTAAGGCGCCTGAT 1 chrXII:628125-628633 ( 59) TTTGGCCGAGCGGTCTAAGGCGCCTGAT 1 chrXI:83998-84432 ( 48) GTTGGCCGAGTGGTCTAAGGCGGCAGAC 1 chrX:424290-424390 ( 21) GTTGGCCGAGTGGTCTAAGGCGGCAGAC 1 chrVI:137239-137810 ( 53) CATGGCCAAGTTGGTTAAGGCGTGCGAC 1 chrXI:74413-74811 ( 67) CATGGCCAAGTTGGTTAAGGCGTGCGAC 1 chrXII:605160-605650 ( 45) TGTAGCTCAGTGGTTAGAGCTTCGTGCT 1 chrVII:700181-701154 ( 63) TCTGGCCGAGTGGTCTAAGGCGTCAGGT 1 chrX:390910-391010 ( 16) AGTAGCTCAGTAGGAAGAGCGTCAGTCT 1 chrIV:1175576-1176057 ( 68) AGTAGCTCAGTAGGAAGAGCGTCAGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTGGCCSAGTBGGTWRAGSSNHMGRCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43800 bayes= 10.9585 E= 2.1e-165 -283 119 20 -3 -103 -312 20 97 -1217 -1217 -1217 169 -37 -1217 200 -1217 -1217 -1217 240 -1217 -1217 223 -1217 -151 -1217 163 -13 -37 -183 140 57 -125 169 -1217 -1217 -1217 -103 -1217 216 -1217 -1217 -213 -1217 162 -283 46 78 25 -1217 -1217 240 -1217 -1217 -1217 183 7 -283 -54 -54 117 102 -1217 -1217 25 87 -312 112 -1217 69 -13 20 -151 -1217 -1217 240 -1217 -1217 173 96 -1217 -1217 96 168 -383 17 20 -13 -25 -37 112 -154 -13 25 104 -154 -83 -183 -54 168 -83 56 -213 96 -125 -103 168 -80 -125 -1217 -13 -1217 141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTGGCCSAGTBGGTWRAGSSNHMGRCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 46 E= 2.1e-165 0.043478 0.434783 0.217391 0.304348 0.152174 0.021739 0.217391 0.608696 0.000000 0.000000 0.000000 1.000000 0.239130 0.000000 0.760870 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.891304 0.000000 0.108696 0.000000 0.586957 0.173913 0.239130 0.086957 0.500000 0.282609 0.130435 1.000000 0.000000 0.000000 0.000000 0.152174 0.000000 0.847826 0.000000 0.000000 0.043478 0.000000 0.956522 0.043478 0.260870 0.326087 0.369565 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.673913 0.326087 0.043478 0.130435 0.130435 0.695652 0.630435 0.000000 0.000000 0.369565 0.565217 0.021739 0.413043 0.000000 0.500000 0.173913 0.217391 0.108696 0.000000 0.000000 1.000000 0.000000 0.000000 0.630435 0.369565 0.000000 0.000000 0.369565 0.608696 0.021739 0.347826 0.217391 0.173913 0.260870 0.239130 0.413043 0.065217 0.282609 0.369565 0.391304 0.065217 0.173913 0.086957 0.130435 0.608696 0.173913 0.456522 0.043478 0.369565 0.130435 0.152174 0.608696 0.108696 0.130435 0.000000 0.173913 0.000000 0.826087 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTGGCCSAGTBGGTWRAGSSNHMGRCT MEME-2 regular expression -------------------------------------------------------------------------------- [CTG][TG]T[GA]GC[CT][CG]AGT[TGC]G[GT]T[AT][AG][AG]G[CG][GC][ATC][CTA][CA]G[AG]CT -------------------------------------------------------------------------------- Time 681.06 secs. ******************************************************************************** ******************************************************************************** MOTIF TWACCAYTAMACYAYNDSSGC MEME-3 width = 21 sites = 38 llr = 581 E-value = 9.0e-059 ******************************************************************************** -------------------------------------------------------------------------------- Motif TWACCAYTAMACYAYNDSSGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 137::8::757::a14212:3 pos.-specific C 3::aa:6::4:a5:5225336 probability G :22::2::323::::23456: matrix T 651:::4a::::5:423:111 bits 2.4 ** * 2.2 ** * 1.9 ** * 1.7 ** * * * Relative 1.4 ** * * * Entropy 1.2 ***** * * (22.1 bits) 1.0 ****** **** * ** 0.7 ************* * ** 0.5 *************** **** 0.2 *************** **** 0.0 --------------------- Multilevel TTACCACTAAACCACAGCGGC consensus CA T GCG T TCTGCCA sequence TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWACCAYTAMACYAYNDSSGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrVI:162025-162400 - 66 2.69e-10 ACGTTGGATT TTACCACTAAACCACTTGCGC TTGTTTTCTT chrXV:226466-226879 + 39 2.69e-10 ACGTTGGATT TTACCACTAAACCACTTGCGC TGAATTTCTT chrIV:83306-83832 - 29 2.69e-10 ACGTTGGATT TTACCACTAAACCACTTGCGC TAAGTGAACT chrXVI:860140-860645 - 37 2.69e-10 ACGTTGGATT TTACCACTAAACCACTTGCGC TTGTTATTTA chrVII:930828-931154 + 62 2.69e-10 ACGTTGGATT TTACCACTAAACCACTTGCGC TTACTGATTA chrXV:594232-594655 + 12 2.72e-09 GCATAAATTC TAACCACTGAACCACTTGCGC GTTTCAATCA chrVIII:134059-134659 - 12 6.73e-09 CCGAAAGTGA TAACCACTACACTATAGGACC GGAACTTACT chrXVI:775610-776102 + 10 8.87e-09 TCTGCTGCG CTACCACTGCGCCATACGAGC TTTTGAATTA chrX:374201-374301 + 74 1.49e-08 GTCAGACGCG TTGCCATTACGCCACGCGAGC TACTAT chrI:138905-139344 - 78 2.39e-08 TC ATACCACTAGACCACACGCCC GTACTAATTG chrVIII:388682-389210 + 79 2.39e-08 AGCGAGAATC ATACCACTAGACCACACGCCC A chrXV:464276-464701 - 12 2.39e-08 AGCGAGAATC ATACCACTAGACCACACGCCC TTGTTAACTT chrXII:92409-92723 - 32 2.39e-08 AGCGAGAATC ATACCACTAGACCACACGCCC TTATTAACTT chrX:355200-355300 - 36 3.00e-08 GCGCCCATTC TGACCATTAAACTATCACGGA AGAAACAAAG chrIV:568518-569501 - 5 3.00e-08 GCGCCCATTC TGACCATTAAACTATCACGGA AGAA chrX:204486-204586 - 26 3.00e-08 GCGCCCATTC TGACCATTAAACTATCACGGA TTTTTATGTT chrIX:336121-336671 + 54 3.00e-08 GCGCCCATTC TGACCATTAAACTATCACGGA TTTGTTTCTA chrII:405651-406217 - 76 3.00e-08 ATTC TGACCATTAAACTATCACGGA AGAAACAAAG chrVII:531392-531778 - 75 3.00e-08 CATTC TGACCATTAAACTATCACGGA AGTAACTCGA chrVII:661515-661947 - 68 6.16e-08 GTGCAACGCT CTACCACTAAGCTAAGGAGGC AAATTTTTAC chrIX:197345-197916 - 12 6.16e-08 CGTGATGTGA TAGCCGTTACACTACATCGGA TTTGATTAGC chrXVI:744051-744601 - 8 6.16e-08 GTGCAACGCT CTACCACTAAGCTAAGGAGGC TTTTACA chrVII:1003987-1004403 - 71 6.16e-08 TGCAACGCT CTACCACTAAGCTAAGGAGGC AAACCCTTGA chrII:644906-645455 - 37 9.79e-08 CGTGATGTGA TAGCCGTTACACTATATCGGA TAATAACTTA chrIX:370245-370595 - 47 9.79e-08 CGTGATGTGA TAGCCGTTACACTATATCGGA TTATAATCTA chrXIII:290490-291147 - 33 9.79e-08 CGTGATGTGA TAGCCGTTACACTATATCGGA TTATATTTCA chrXI:140760-141400 + 39 9.79e-08 CGTGATGTGA TAGCCGTTACACTATATCGGA TTACAAAGGA chrV:130862-131378 + 63 1.16e-07 CCGAAAGTGA TAACCACTACACTATAAAACC TCTTAATTAT chrII:350580-351045 - 65 1.16e-07 CCGAAAGTGA TAACCACTACACTATAAAACC CTTTTATTGA chrXI:326420-327601 + 12 1.27e-07 TTTCCATTTC TAACCATTGGTCCATAGCGGC CATTCTCTTG chrX:517654-517754 + 11 2.04e-07 GCCCTGCGCG CTTCCACTGCGCCACGGCGCT TAACTTTTAT chrIII:149724-150190 - 13 2.04e-07 GCCCTGCGCG CTTCCACTGCGCCACGGCGCT CAACATTACA chrXVI:338621-339208 + 35 2.04e-07 GCCCTGCGCG CTTCCACTGCGCCACGGCGCT GCTAAATCAT chrX:415702-415802 + 55 2.20e-07 GTCGAAAGCT CTACCATTGAGCCACCGCTTC AACTTTTGTT chrVII:287084-287760 + 63 2.20e-07 GTCGAAAGCT CTACCATTGAGCCACCGCTTC ATCTTGAAAT chrXI:302653-303229 - 27 2.20e-07 GTCGAAAGCT CTACCATTGAGCCACCGCTTC ATCTTGGAAT chrII:326565-327214 + 6 3.84e-07 GTCTT GAACCACTGGACCATTGGACC CGGAACTCGA chrIV:1075306-1075785 + 29 8.59e-07 GGCAACGTGA TAGCCGCTACACTATTGGAAC AATATTACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWACCAYTAMACYAYNDSSGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVI:162025-162400 2.7e-10 65_[-3]_14 chrXV:226466-226879 2.7e-10 38_[+3]_41 chrIV:83306-83832 2.7e-10 28_[-3]_51 chrXVI:860140-860645 2.7e-10 36_[-3]_43 chrVII:930828-931154 2.7e-10 61_[+3]_18 chrXV:594232-594655 2.7e-09 11_[+3]_68 chrVIII:134059-134659 6.7e-09 11_[-3]_68 chrXVI:775610-776102 8.9e-09 9_[+3]_70 chrX:374201-374301 1.5e-08 73_[+3]_6 chrI:138905-139344 2.4e-08 77_[-3]_2 chrVIII:388682-389210 2.4e-08 78_[+3]_1 chrXV:464276-464701 2.4e-08 11_[-3]_68 chrXII:92409-92723 2.4e-08 31_[-3]_48 chrX:355200-355300 3e-08 35_[-3]_44 chrIV:568518-569501 3e-08 4_[-3]_75 chrX:204486-204586 3e-08 25_[-3]_54 chrIX:336121-336671 3e-08 53_[+3]_26 chrII:405651-406217 3e-08 75_[-3]_4 chrVII:531392-531778 3e-08 74_[-3]_5 chrVII:661515-661947 6.2e-08 67_[-3]_12 chrIX:197345-197916 6.2e-08 11_[-3]_68 chrXVI:744051-744601 6.2e-08 7_[-3]_72 chrVII:1003987-1004403 6.2e-08 70_[-3]_9 chrII:644906-645455 9.8e-08 36_[-3]_43 chrIX:370245-370595 9.8e-08 46_[-3]_33 chrXIII:290490-291147 9.8e-08 32_[-3]_47 chrXI:140760-141400 9.8e-08 38_[+3]_41 chrV:130862-131378 1.2e-07 62_[+3]_17 chrII:350580-351045 1.2e-07 64_[-3]_15 chrXI:326420-327601 1.3e-07 11_[+3]_68 chrX:517654-517754 2e-07 10_[+3]_69 chrIII:149724-150190 2e-07 12_[-3]_67 chrXVI:338621-339208 2e-07 34_[+3]_45 chrX:415702-415802 2.2e-07 54_[+3]_25 chrVII:287084-287760 2.2e-07 62_[+3]_17 chrXI:302653-303229 2.2e-07 26_[-3]_53 chrII:326565-327214 3.8e-07 5_[+3]_74 chrIV:1075306-1075785 8.6e-07 28_[+3]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWACCAYTAMACYAYNDSSGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TWACCAYTAMACYAYNDSSGC width=21 seqs=38 chrVI:162025-162400 ( 66) TTACCACTAAACCACTTGCGC 1 chrXV:226466-226879 ( 39) TTACCACTAAACCACTTGCGC 1 chrIV:83306-83832 ( 29) TTACCACTAAACCACTTGCGC 1 chrXVI:860140-860645 ( 37) TTACCACTAAACCACTTGCGC 1 chrVII:930828-931154 ( 62) TTACCACTAAACCACTTGCGC 1 chrXV:594232-594655 ( 12) TAACCACTGAACCACTTGCGC 1 chrVIII:134059-134659 ( 12) TAACCACTACACTATAGGACC 1 chrXVI:775610-776102 ( 10) CTACCACTGCGCCATACGAGC 1 chrX:374201-374301 ( 74) TTGCCATTACGCCACGCGAGC 1 chrI:138905-139344 ( 78) ATACCACTAGACCACACGCCC 1 chrVIII:388682-389210 ( 79) ATACCACTAGACCACACGCCC 1 chrXV:464276-464701 ( 12) ATACCACTAGACCACACGCCC 1 chrXII:92409-92723 ( 32) ATACCACTAGACCACACGCCC 1 chrX:355200-355300 ( 36) TGACCATTAAACTATCACGGA 1 chrIV:568518-569501 ( 5) TGACCATTAAACTATCACGGA 1 chrX:204486-204586 ( 26) TGACCATTAAACTATCACGGA 1 chrIX:336121-336671 ( 54) TGACCATTAAACTATCACGGA 1 chrII:405651-406217 ( 76) TGACCATTAAACTATCACGGA 1 chrVII:531392-531778 ( 75) TGACCATTAAACTATCACGGA 1 chrVII:661515-661947 ( 68) CTACCACTAAGCTAAGGAGGC 1 chrIX:197345-197916 ( 12) TAGCCGTTACACTACATCGGA 1 chrXVI:744051-744601 ( 8) CTACCACTAAGCTAAGGAGGC 1 chrVII:1003987-1004403 ( 71) CTACCACTAAGCTAAGGAGGC 1 chrII:644906-645455 ( 37) TAGCCGTTACACTATATCGGA 1 chrIX:370245-370595 ( 47) TAGCCGTTACACTATATCGGA 1 chrXIII:290490-291147 ( 33) TAGCCGTTACACTATATCGGA 1 chrXI:140760-141400 ( 39) TAGCCGTTACACTATATCGGA 1 chrV:130862-131378 ( 63) TAACCACTACACTATAAAACC 1 chrII:350580-351045 ( 65) TAACCACTACACTATAAAACC 1 chrXI:326420-327601 ( 12) TAACCATTGGTCCATAGCGGC 1 chrX:517654-517754 ( 11) CTTCCACTGCGCCACGGCGCT 1 chrIII:149724-150190 ( 13) CTTCCACTGCGCCACGGCGCT 1 chrXVI:338621-339208 ( 35) CTTCCACTGCGCCACGGCGCT 1 chrX:415702-415802 ( 55) CTACCATTGAGCCACCGCTTC 1 chrVII:287084-287760 ( 63) CTACCATTGAGCCACCGCTTC 1 chrXI:302653-303229 ( 27) CTACCATTGAGCCACCGCTTC 1 chrII:326565-327214 ( 6) GAACCACTGGACCATTGGACC 1 chrIV:1075306-1075785 ( 29) TAGCCGCTACACTATTGGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWACCAYTAMACYAYNDSSGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.4966 E= 9.0e-059 -156 47 -285 96 3 -1189 -27 76 125 -1189 -4 -197 -1189 240 -1189 -1189 -1189 240 -1189 -1189 144 -1189 -27 -1189 -1189 161 -1189 44 -1189 -1189 -1189 169 125 -1189 47 -1189 61 96 -27 -1189 114 -1189 61 -355 -1189 240 -1189 -1189 -1189 147 -1189 61 169 -1189 -1189 -1189 -197 132 -1189 53 25 32 -4 -56 -56 -27 85 -10 -124 132 106 -1189 -75 47 132 -197 -355 61 167 -197 -10 173 -1189 -197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWACCAYTAMACYAYNDSSGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 38 E= 9.0e-059 0.105263 0.263158 0.026316 0.605263 0.315789 0.000000 0.157895 0.526316 0.736842 0.000000 0.184211 0.078947 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.842105 0.000000 0.157895 0.000000 0.000000 0.578947 0.000000 0.421053 0.000000 0.000000 0.000000 1.000000 0.736842 0.000000 0.263158 0.000000 0.473684 0.368421 0.157895 0.000000 0.684211 0.000000 0.289474 0.026316 0.000000 1.000000 0.000000 0.000000 0.000000 0.526316 0.000000 0.473684 1.000000 0.000000 0.000000 0.000000 0.078947 0.473684 0.000000 0.447368 0.368421 0.236842 0.184211 0.210526 0.210526 0.157895 0.342105 0.289474 0.131579 0.473684 0.394737 0.000000 0.184211 0.263158 0.473684 0.078947 0.026316 0.289474 0.605263 0.078947 0.289474 0.631579 0.000000 0.078947 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWACCAYTAMACYAYNDSSGC MEME-3 regular expression -------------------------------------------------------------------------------- [TC][TA]ACCA[CT]T[AG][AC][AG]C[CT]A[CT][ACT][GTA][CG][GC][GC][CA] -------------------------------------------------------------------------------- Time 1004.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:392467-394771 6.48e-01 100 chrVIII:381275-383383 7.08e-01 100 chrXV:92712-94800 4.46e-01 100 chrVII:343897-346620 6.07e-01 100 chrXI:282560-284247 9.22e-01 100 chrI:166178-166640 8.29e-01 100 chrIV:1466566-1468485 6.26e-01 100 chrXVI:794432-796110 8.24e-01 100 chrXIII:572545-573446 7.80e-01 100 chrVII:648095-648487 3.99e-01 100 chrVII:531392-531778 1.52e-06 51_[-1(1.99e-05)]_2_[-3(3.00e-08)]_\ 5 chrXI:356156-356488 3.70e-01 100 chrIV:884292-884652 7.63e-05 40_[+1(1.13e-08)]_39 chrIV:47493-49661 9.23e-01 100 chrXVI:431168-432903 4.62e-01 100 chrIV:1239344-1240401 9.27e-01 100 chrXI:513186-513506 1.07e-02 45_[-1(2.01e-06)]_34 chrV:53498-54307 9.34e-01 100 chrXIV:569589-570035 8.23e-01 100 chrIV:1149900-1151193 8.02e-01 100 chrXII:366020-366548 3.40e-01 100 chrV:51818-53272 8.88e-01 100 chrII:350580-351045 1.00e-05 64_[-3(1.16e-07)]_15 chrXI:430538-431648 5.21e-01 100 chrXVI:209658-210466 9.74e-01 100 chrVII:544406-546045 9.78e-02 100 chrXV:832306-832851 9.61e-01 100 chrXII:47801-49131 9.39e-01 100 chrVII:930828-931154 9.04e-14 21_[-1(1.91e-09)]_19_[+3(2.69e-10)]_\ 18 chrXV:896776-898362 3.76e-01 100 chrXIII:145865-147214 1.56e-01 100 chrV:305759-307662 5.82e-01 100 chrXVI:585845-586217 7.24e-01 100 chrIII:58649-59009 9.93e-01 100 chrIV:992682-993218 4.76e-01 100 chrXV:758984-759513 3.65e-01 100 chrII:226985-227363 7.08e-04 1_[+1(1.92e-07)]_78 chrXIII:747731-748766 8.69e-01 100 chrVII:328375-329177 6.51e-01 100 chrXII:780800-781892 6.70e-01 100 chrVIII:466904-467327 1.41e-01 100 chrX:745026-745126 6.96e-01 100 chrVII:483267-483793 1.52e-01 100 chrX:119349-119449 5.49e-01 100 chrXII:897636-899639 9.59e-01 100 chrXIII:279890-280398 6.47e-01 100 chrXIV:217269-217656 2.27e-01 100 chrXIV:715419-716649 8.66e-01 100 chrVII:561408-561704 7.27e-01 100 chrXVI:768529-769502 3.67e-01 100 chrXIII:118385-119553 3.53e-01 100 chrIX:257370-257980 5.65e-01 100 chrXV:671062-671394 6.43e-01 100 chrXIII:259012-259492 7.83e-09 4_[-2(1.01e-11)]_68 chrVIII:16182-18462 9.84e-01 100 chrXI:558669-559481 2.20e-01 100 chrX:606163-606263 5.43e-01 100 chrVII:316765-317351 2.66e-01 100 chrXVI:338621-339208 5.21e-05 34_[+3(2.04e-07)]_45 chrVII:205131-206242 3.71e-01 100 chrXI:364400-365220 4.37e-02 52_[+1(4.53e-05)]_27 chrXII:855571-857594 7.29e-01 100 chrI:20755-21031 3.73e-02 100 chrXI:208153-209125 9.88e-01 100 chrV:441799-442687 4.72e-01 100 chrIV:1305128-1306239 4.39e-12 1_[+2(1.01e-11)]_19_[+1(1.92e-07)]_\ 31 chrVII:438172-439907 1.78e-01 100 chrXIII:378859-379661 5.15e-01 100 chrXIV:102576-103220 7.92e-01 100 chrIII:177033-178804 9.17e-01 100 chrXII:567939-569148 6.60e-02 73_[-1(2.18e-05)]_6 chrVIII:145326-146784 9.35e-01 100 chrXI:260303-260790 9.98e-01 100 chrXI:578731-579407 5.10e-06 10_[+1(1.13e-09)]_69 chrXII:1017638-1019426 7.65e-01 100 chrIV:129386-131171 3.38e-01 100 chrV:490990-491892 7.06e-01 100 chrXII:426860-427591 9.89e-01 100 chrIV:1449774-1451635 5.42e-01 100 chrXII:214680-215061 6.51e-07 72_[-1(2.31e-11)]_7 chrVII:479164-482930 4.62e-01 100 chrXVI:559941-560467 2.04e-05 53_[-1(1.02e-08)]_26 chrIV:132739-133199 7.61e-01 100 chrIII:151051-151590 2.90e-14 23_[-1(7.44e-10)]_9_[-2(6.85e-11)]_\ 19 chrVII:989786-990388 6.20e-01 100 chrXII:424118-424508 4.46e-01 100 chrII:88931-90476 1.99e-01 100 chrXII:949743-953149 3.63e-02 52_[-2(3.86e-05)]_20 chrXV:1003913-1004971 7.30e-01 100 chrVIII:358287-358814 6.24e-08 36_[-2(1.33e-11)]_36 chrVII:397879-398991 6.75e-01 100 chrXI:248334-248620 2.38e-01 100 chrXVI:74987-76757 7.59e-02 100 chrVII:1003987-1004403 1.53e-05 70_[-3(6.16e-08)]_9 chrXV:274470-275016 6.06e-04 49_[+1(4.86e-07)]_30 chrVII:877327-877533 6.00e-01 100 chrIV:416487-417498 1.47e-01 100 chrXII:628125-628633 6.93e-07 58_[+2(4.29e-09)]_14 chrXVI:785610-787290 2.97e-02 100 chrX:196605-196705 3.79e-01 100 chrVII:110350-110781 6.06e-01 100 chrXII:92409-92723 2.86e-06 31_[-3(2.39e-08)]_48 chrXVI:622310-622858 3.64e-13 15_[-1(1.02e-08)]_28_[-2(1.33e-11)]_\ 8 chrXIII:123216-124530 1.71e-01 100 chrXII:368139-372287 9.88e-01 100 chrIII:168078-168561 5.67e-07 41_[-1(1.91e-09)]_8_[-2(6.01e-05)]_\ 2 chrI:68314-68594 5.69e-01 100 chrXVI:878831-880553 7.95e-02 75_[-3(5.81e-05)]_4 chrXIII:131281-132128 3.33e-01 100 chrXV:216276-216720 1.45e-01 100 chrXIII:219696-221196 9.19e-01 100 chrII:254163-257601 6.22e-01 100 chrVII:122000-122531 6.50e-08 58_[+2(6.85e-11)]_14 chrIV:619602-620265 3.22e-01 100 chrV:311787-312313 2.61e-15 32_[-1(2.31e-11)]_9_[-2(3.49e-10)]_\ 10 chrIV:1095140-1095695 1.11e-13 12_[-1(1.02e-08)]_28_[-2(3.65e-12)]_\ 11 chrXV:663412-664874 2.19e-01 100 chrIV:411223-411657 2.64e-02 100 chrV:6214-6752 2.95e-01 100 chrXV:464276-464701 2.86e-06 11_[-3(2.39e-08)]_68 chrII:405651-406217 4.84e-10 13_[+1(9.89e-05)]_[+1(5.80e-09)]_20_\ [-3(3.00e-08)]_4 chrXIII:650749-652904 5.45e-01 100 chrX:90028-90128 2.76e-01 100 chrXVI:860140-860645 9.04e-14 36_[-3(2.69e-10)]_19_[+1(1.91e-09)]_\ 3 chrVI:167219-167679 1.53e-01 100 chrVII:779338-779756 3.75e-01 100 chrXVI:66587-67471 4.62e-02 20_[+1(1.73e-05)]_59 chrXIII:808072-808977 6.03e-01 100 chrXV:968030-968488 2.31e-01 100 chrXI:108517-110120 4.31e-01 100 chrVII:857170-857662 4.05e-03 21_[-1(2.01e-06)]_58 chrIII:78292-78866 5.32e-01 100 chrXII:712306-713612 7.01e-01 100 chrXII:348074-348822 6.59e-01 100 chrIV:1075306-1075785 3.32e-04 28_[+3(8.59e-07)]_51 chrXIII:702130-703100 9.47e-01 100 chrII:197150-197838 2.24e-08 54_[+2(1.33e-11)]_18 chrIX:231255-232434 7.63e-01 100 chrVII:805835-807794 6.35e-01 100 chrIV:410200-410451 6.64e-01 100 chrXI:457602-458986 5.36e-01 100 chrVI:30865-32316 6.92e-01 100 chrXII:5579-5792 5.11e-01 100 chrII:266184-266719 2.24e-05 18_[+1(4.08e-09)]_61 chrXI:46723-47017 9.83e-01 100 chrIX:174709-175531 4.99e-05 2_[+1(4.08e-09)]_77 chrIV:464386-468750 8.08e-01 100 chrXI:140760-141400 1.24e-04 38_[+3(9.79e-08)]_41 chrXI:302653-303229 3.97e-05 26_[-3(2.20e-07)]_53 chrVIII:388682-389210 2.21e-12 6_[-1(6.51e-10)]_51_[+3(2.39e-08)]_\ 1 chrIV:340511-341669 5.23e-02 100 chrVIII:237696-238082 3.64e-13 18_[-1(1.02e-08)]_28_[-2(1.33e-11)]_\ 5 chrXIII:556922-558407 2.90e-01 100 chrXIII:161891-164367 7.66e-01 100 chrX:181109-181209 7.58e-01 100 chrVI:95423-95906 1.22e-01 100 chrVII:845084-845940 6.01e-01 100 chrX:424290-424390 4.76e-07 20_[-2(7.08e-09)]_52 chrXVI:435616-436206 7.68e-05 41_[-1(3.53e-05)]_9_[+3(4.83e-05)]_\ 8 chrXII:605160-605650 9.14e-12 44_[-2(9.27e-09)]_28 chrII:555784-558143 4.26e-01 100 chrXIII:372186-372769 5.94e-12 27_[-1(6.53e-09)]_10_[-2(1.66e-09)]_\ 14 chrVII:318903-320149 7.22e-01 100 chrVII:648741-649347 2.34e-01 100 chrXIII:168228-169006 1.00e+00 100 chrXII:522153-522456 9.93e-01 100 chrIV:1013444-1013949 8.77e-01 100 chrIV:1362238-1362576 3.42e-02 100 chrXI:114887-115138 1.94e-01 100 chrXV:228040-228552 6.16e-01 100 chrIV:83306-83832 9.04e-14 28_[-3(2.69e-10)]_19_[+1(1.91e-09)]_\ 11 chrXV:281776-282713 1.64e-06 9_[+1(1.91e-09)]_70 chrXI:551564-552683 9.55e-01 100 chrXIV:301450-302064 9.81e-01 100 chrX:73371-73471 6.54e-02 100 chrXIV:702731-702950 7.34e-01 100 chrXI:74413-74811 3.00e-06 66_[+2(8.11e-09)]_6 chrXIV:585361-586565 8.79e-01 100 chrXI:771-1099 3.31e-01 100 chrI:81911-82329 2.53e-01 100 chrXII:1028178-1028596 7.76e-01 100 chrXVI:819327-819822 1.48e-15 9_[+2(1.33e-11)]_10_[+1(2.26e-10)]_\ 32 chrVII:148066-149541 9.43e-01 100 chrX:122173-122273 4.34e-01 100 chrI:202282-203502 9.77e-01 100 chrIX:299990-300518 2.90e-14 33_[-1(7.44e-10)]_9_[-2(6.85e-11)]_\ 9 chrXI:313252-314007 3.58e-01 100 chrV:260299-260538 7.24e-01 100 chrIX:316100-318273 2.98e-02 58_[+1(9.65e-06)]_21 chrIII:183-1301 6.72e-01 100 chrXII:645860-646207 4.90e-01 100 chrVIII:210865-211708 5.02e-02 61_[+2(2.31e-05)]_11 chrXII:932047-932520 6.23e-01 100 chrXII:201697-202739 9.76e-02 100 chrXVI:214396-215860 6.47e-01 100 chrX:58966-59066 1.10e-01 100 chrXV:161048-161718 4.64e-01 100 chrXI:162432-162777 5.09e-01 100 chrX:195396-195496 1.96e-02 36_[+1(1.24e-05)]_43 chrV:486987-487671 1.66e-05 61_[-1(1.29e-09)]_18 chrIV:1164930-1165263 4.29e-01 100 chrXIV:88882-90057 1.00e+00 100 chrIII:142088-143016 7.70e-01 100 chrXIV:632507-632884 4.48e-02 100 chrIX:67688-69590 4.97e-01 100 chrVI:64075-65424 4.48e-01 100 chrII:680917-682218 9.53e-01 100 chrX:663420-663520 8.63e-01 100 chrVII:828379-828998 7.20e-01 100 chrXIV:703263-703981 5.09e-01 100 chrXVI:571978-572496 7.88e-01 100 chrXII:1051904-1052195 8.20e-01 100 chrXVI:453501-454112 5.25e-01 100 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chrXVI:296981-298260 9.41e-01 100 chrXVI:40367-40643 5.81e-01 100 chrXIII:759018-759560 4.62e-01 100 chrXI:518639-521015 2.44e-01 100 chrXV:407638-408247 2.24e-01 100 chrX:391827-391927 3.13e-01 100 chrXIV:493884-495625 8.82e-01 100 chrIV:321625-321933 8.54e-01 100 chrVII:736191-736883 9.97e-01 100 chrX:355200-355300 8.15e-09 35_[-3(3.00e-08)]_20_[+1(2.01e-06)]_\ 3 chrI:71642-73651 4.96e-01 100 chrIX:325510-326092 1.34e-12 1_[+2(7.70e-11)]_9_[+1(4.08e-09)]_\ 41 chrXV:300842-301601 5.42e-01 100 chrXVI:689369-689896 8.73e-04 33_[+1(1.13e-06)]_46 chrVII:786793-788763 6.98e-01 100 chrVII:766187-766410 1.04e-01 100 chrVII:411883-412587 5.36e-01 100 chrX:390910-391010 1.11e-06 15_[-2(1.54e-08)]_57 chrXVI:280557-282940 4.83e-01 100 chrIV:519665-519953 5.86e-02 36_[+1(2.18e-05)]_43 chrXII:232045-234865 6.28e-01 100 chrX:115389-115489 4.16e-01 100 chrIV:1461114-1461823 5.83e-01 100 chrXI:411239-415306 8.36e-01 100 chrII:9461-9997 6.63e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************