******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--CUP9/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71773-73257 1.0000 100 chrI:81884-82345 1.0000 100 chrI:138924-139349 1.0000 100 chrI:166170-166876 1.0000 100 chrII:9463-10015 1.0000 100 chrII:36235-36790 1.0000 100 chrII:37082-37321 1.0000 100 chrII:44935-45387 1.0000 100 chrII:60692-61263 1.0000 100 chrII:87955-88548 1.0000 100 chrII:88959-90343 1.0000 100 chrII:135972-136291 1.0000 100 chrII:165068-165534 1.0000 100 chrII:167884-169540 1.0000 100 chrII:181184-181689 1.0000 100 chrII:197224-197838 1.0000 100 chrII:226975-227352 1.0000 100 chrII:255082-255683 1.0000 100 chrII:266212-266765 1.0000 100 chrII:301119-301624 1.0000 100 chrII:326507-327246 1.0000 100 chrII:332298-333066 1.0000 100 chrII:347403-347927 1.0000 100 chrII:350595-351068 1.0000 100 chrII:405663-406217 1.0000 100 chrII:415496-415945 1.0000 100 chrII:476843-477729 1.0000 100 chrII:592879-593294 1.0000 100 chrII:604115-607109 1.0000 100 chrII:644963-645428 1.0000 100 chrIII:117-1257 1.0000 100 chrIII:29592-31172 1.0000 100 chrIII:82465-82643 1.0000 100 chrIII:90787-91084 1.0000 100 chrIII:123484-123807 1.0000 100 chrIII:127545-127897 1.0000 100 chrIII:142250-143006 1.0000 100 chrIII:149715-150252 1.0000 100 chrIII:151014-151606 1.0000 100 chrIII:162522-163895 1.0000 100 chrIII:168099-168547 1.0000 100 chrIII:177099-178707 1.0000 100 chrIII:227756-228218 1.0000 100 chrIII:295352-295948 1.0000 100 chrIII:308599-308984 1.0000 100 chrIV:45218-45794 1.0000 100 chrIV:83334-84023 1.0000 100 chrIV:117151-118206 1.0000 100 chrIV:125326-125676 1.0000 100 chrIV:129204-131206 1.0000 100 chrIV:217074-218082 1.0000 100 chrIV:221421-222372 1.0000 100 chrIV:229444-229889 1.0000 100 chrIV:308006-309393 1.0000 100 chrIV:321624-321966 1.0000 100 chrIV:341044-341653 1.0000 100 chrIV:355113-356998 1.0000 100 chrIV:358043-358419 1.0000 100 chrIV:359054-359786 1.0000 100 chrIV:410194-410457 1.0000 100 chrIV:411104-411664 1.0000 100 chrIV:434052-435113 1.0000 100 chrIV:437545-438105 1.0000 100 chrIV:465174-468073 1.0000 100 chrIV:488460-488992 1.0000 100 chrIV:489759-491266 1.0000 100 chrIV:519654-519915 1.0000 100 chrIV:520707-521170 1.0000 100 chrIV:538876-539281 1.0000 100 chrIV:568641-569332 1.0000 100 chrIV:579019-580717 1.0000 100 chrIV:599794-600117 1.0000 100 chrIV:601203-601523 1.0000 100 chrIV:619706-620398 1.0000 100 chrIV:667803-668583 1.0000 100 chrIV:757474-758386 1.0000 100 chrIV:802583-802837 1.0000 100 chrIV:835873-837976 1.0000 100 chrIV:884288-884576 1.0000 100 chrIV:945391-946639 1.0000 100 chrIV:976183-976449 1.0000 100 chrIV:992682-993284 1.0000 100 chrIV:1013410-1014018 1.0000 100 chrIV:1016986-1017510 1.0000 100 chrIV:1075329-1075748 1.0000 100 chrIV:1095160-1095685 1.0000 100 chrIV:1150688-1151173 1.0000 100 chrIV:1161624-1162033 1.0000 100 chrIV:1162907-1164615 1.0000 100 chrIV:1175584-1176094 1.0000 100 chrIV:1201051-1202115 1.0000 100 chrIV:1300878-1301348 1.0000 100 chrIV:1305156-1305908 1.0000 100 chrIV:1352071-1353091 1.0000 100 chrIV:1355726-1356032 1.0000 100 chrIV:1359195-1360822 1.0000 100 chrIV:1401215-1401930 1.0000 100 chrIV:1449801-1451665 1.0000 100 chrIV:1461382-1461847 1.0000 100 chrIX:68166-69544 1.0000 100 chrIX:99615-100056 1.0000 100 chrIX:138228-139163 1.0000 100 chrIX:174696-175465 1.0000 100 chrIX:177676-178208 1.0000 100 chrIX:182892-183689 1.0000 100 chrIX:197320-198048 1.0000 100 chrIX:210663-211024 1.0000 100 chrIX:248578-249372 1.0000 100 chrIX:253916-254579 1.0000 100 chrIX:255159-255854 1.0000 100 chrIX:257357-257851 1.0000 100 chrIX:299979-300653 1.0000 100 chrIX:315913-318518 1.0000 100 chrIX:323734-324544 1.0000 100 chrIX:325514-326132 1.0000 100 chrIX:335984-336636 1.0000 100 chrIX:370249-370581 1.0000 100 chrIX:386542-386933 1.0000 100 chrIX:389300-390953 1.0000 100 chrIX:427320-427789 1.0000 100 chrV:6185-6732 1.0000 100 chrV:23324-24056 1.0000 100 chrV:53498-54418 1.0000 100 chrV:61097-62133 1.0000 100 chrV:67652-68810 1.0000 100 chrV:69074-69338 1.0000 100 chrV:77607-79468 1.0000 100 chrV:85107-86971 1.0000 100 chrV:99875-100283 1.0000 100 chrV:117212-118301 1.0000 100 chrV:130864-131362 1.0000 100 chrV:135163-136175 1.0000 100 chrV:138479-140000 1.0000 100 chrV:140184-141356 1.0000 100 chrV:176882-177437 1.0000 100 chrV:249784-250881 1.0000 100 chrV:270138-270690 1.0000 100 chrV:288203-288760 1.0000 100 chrV:305810-306921 1.0000 100 chrV:311741-312279 1.0000 100 chrV:354795-355205 1.0000 100 chrV:362107-362497 1.0000 100 chrV:396169-397883 1.0000 100 chrV:423081-424335 1.0000 100 chrV:431022-432036 1.0000 100 chrV:434408-435137 1.0000 100 chrV:435323-435948 1.0000 100 chrV:438353-438950 1.0000 100 chrV:441800-442683 1.0000 100 chrV:442980-443341 1.0000 100 chrV:469239-469689 1.0000 100 chrV:486857-487637 1.0000 100 chrV:491074-491391 1.0000 100 chrV:551040-551580 1.0000 100 chrVI:4525-4759 1.0000 100 chrVI:31170-31468 1.0000 100 chrVI:64149-65377 1.0000 100 chrVI:82430-84636 1.0000 100 chrVI:95471-95907 1.0000 100 chrVI:101372-101923 1.0000 100 chrVI:136663-137821 1.0000 100 chrVI:155862-156284 1.0000 100 chrVI:157899-158436 1.0000 100 chrVI:162027-162397 1.0000 100 chrVI:167273-167687 1.0000 100 chrVI:180690-181257 1.0000 100 chrVI:191216-191754 1.0000 100 chrVI:210433-210907 1.0000 100 chrVI:221396-222359 1.0000 100 chrVI:223268-224155 1.0000 100 chrVI:226421-226983 1.0000 100 chrVII:110108-110788 1.0000 100 chrVII:115276-115719 1.0000 100 chrVII:122000-122519 1.0000 100 chrVII:148085-149516 1.0000 100 chrVII:185400-185926 1.0000 100 chrVII:205114-206114 1.0000 100 chrVII:254133-254693 1.0000 100 chrVII:277016-278676 1.0000 100 chrVII:286723-287778 1.0000 100 chrVII:291718-292006 1.0000 100 chrVII:310391-312389 1.0000 100 chrVII:319223-320103 1.0000 100 chrVII:323589-324107 1.0000 100 chrVII:328385-328996 1.0000 100 chrVII:364922-366665 1.0000 100 chrVII:371201-371546 1.0000 100 chrVII:405466-405827 1.0000 100 chrVII:411917-412593 1.0000 100 chrVII:422786-423353 1.0000 100 chrVII:438548-439847 1.0000 100 chrVII:440555-440990 1.0000 100 chrVII:483331-483664 1.0000 100 chrVII:531400-531796 1.0000 100 chrVII:533963-535191 1.0000 100 chrVII:541713-542170 1.0000 100 chrVII:544400-544907 1.0000 100 chrVII:555166-557533 1.0000 100 chrVII:592455-592702 1.0000 100 chrVII:648801-649342 1.0000 100 chrVII:661501-661937 1.0000 100 chrVII:700379-701160 1.0000 100 chrVII:702797-705098 1.0000 100 chrVII:706937-707192 1.0000 100 chrVII:726204-728086 1.0000 100 chrVII:730971-731426 1.0000 100 chrVII:736196-736672 1.0000 100 chrVII:738843-739449 1.0000 100 chrVII:766151-766398 1.0000 100 chrVII:774131-774690 1.0000 100 chrVII:779321-779751 1.0000 100 chrVII:788312-788732 1.0000 100 chrVII:794054-794515 1.0000 100 chrVII:823350-823708 1.0000 100 chrVII:828370-828991 1.0000 100 chrVII:845252-846318 1.0000 100 chrVII:856533-857664 1.0000 100 chrVII:876156-876537 1.0000 100 chrVII:878570-879130 1.0000 100 chrVII:882787-883864 1.0000 100 chrVII:930742-931150 1.0000 100 chrVII:986828-987152 1.0000 100 chrVII:987420-987643 1.0000 100 chrVII:1000310-1000605 1.0000 100 chrVII:1003967-1004414 1.0000 100 chrVIII:62223-62917 1.0000 100 chrVIII:74836-75485 1.0000 100 chrVIII:103679-104296 1.0000 100 chrVIII:115815-116298 1.0000 100 chrVIII:125877-126326 1.0000 100 chrVIII:132789-133343 1.0000 100 chrVIII:133970-134634 1.0000 100 chrVIII:145909-146770 1.0000 100 chrVIII:148985-149494 1.0000 100 chrVIII:175006-176065 1.0000 100 chrVIII:237746-238088 1.0000 100 chrVIII:296830-297242 1.0000 100 chrVIII:358165-358802 1.0000 100 chrVIII:381468-383360 1.0000 100 chrVIII:388671-389217 1.0000 100 chrVIII:466973-467149 1.0000 100 chrVIII:475518-475909 1.0000 100 chrVIII:505814-506213 1.0000 100 chrX:58996-59472 1.0000 100 chrX:73368-75752 1.0000 100 chrX:75929-76497 1.0000 100 chrX:90037-90450 1.0000 100 chrX:115786-116237 1.0000 100 chrX:157430-157956 1.0000 100 chrX:160023-160278 1.0000 100 chrX:196713-197522 1.0000 100 chrX:204491-205029 1.0000 100 chrX:227782-228636 1.0000 100 chrX:233727-234121 1.0000 100 chrX:354165-354554 1.0000 100 chrX:355204-355730 1.0000 100 chrX:374180-374892 1.0000 100 chrX:378145-378580 1.0000 100 chrX:390933-391338 1.0000 100 chrX:391785-392144 1.0000 100 chrX:396460-397027 1.0000 100 chrX:414774-415325 1.0000 100 chrX:415719-416331 1.0000 100 chrX:422681-423239 1.0000 100 chrX:424295-424717 1.0000 100 chrX:517663-518203 1.0000 100 chrX:523913-524419 1.0000 100 chrX:531478-532215 1.0000 100 chrX:538523-538771 1.0000 100 chrX:540718-541988 1.0000 100 chrX:542751-543259 1.0000 100 chrX:545406-545730 1.0000 100 chrX:606252-606747 1.0000 100 chrX:607630-608140 1.0000 100 chrX:617692-618136 1.0000 100 chrX:651214-651622 1.0000 100 chrX:690555-690865 1.0000 100 chrX:703232-703801 1.0000 100 chrX:745097-745747 1.0000 100 chrXI:768-1101 1.0000 100 chrXI:46717-47004 1.0000 100 chrXI:67750-68095 1.0000 100 chrXI:74440-74807 1.0000 100 chrXI:84016-84435 1.0000 100 chrXI:99723-100001 1.0000 100 chrXI:108595-110135 1.0000 100 chrXI:140786-141336 1.0000 100 chrXI:141688-142579 1.0000 100 chrXI:158207-159328 1.0000 100 chrXI:162434-162731 1.0000 100 chrXI:219633-220111 1.0000 100 chrXI:302704-303243 1.0000 100 chrXI:308015-308434 1.0000 100 chrXI:313222-313789 1.0000 100 chrXI:356174-356510 1.0000 100 chrXI:379483-379917 1.0000 100 chrXI:382199-382473 1.0000 100 chrXI:430821-431652 1.0000 100 chrXI:457400-458980 1.0000 100 chrXI:490723-491361 1.0000 100 chrXI:513193-513517 1.0000 100 chrXI:517798-518071 1.0000 100 chrXI:518848-521702 1.0000 100 chrXI:578730-579317 1.0000 100 chrXI:614162-614450 1.0000 100 chrXI:614882-615188 1.0000 100 chrXI:618003-619382 1.0000 100 chrXI:645432-645883 1.0000 100 chrXI:666610-666783 1.0000 100 chrXII:56-210 1.0000 100 chrXII:5580-5797 1.0000 100 chrXII:48698-49218 1.0000 100 chrXII:92415-92716 1.0000 100 chrXII:167554-168264 1.0000 100 chrXII:198347-199695 1.0000 100 chrXII:214705-215067 1.0000 100 chrXII:232012-234174 1.0000 100 chrXII:241611-242027 1.0000 100 chrXII:262833-263934 1.0000 100 chrXII:366039-366496 1.0000 100 chrXII:369041-370261 1.0000 100 chrXII:370567-371071 1.0000 100 chrXII:374212-374727 1.0000 100 chrXII:424114-424593 1.0000 100 chrXII:426889-427444 1.0000 100 chrXII:448498-448958 1.0000 100 chrXII:459595-460729 1.0000 100 chrXII:498368-499792 1.0000 100 chrXII:521667-522448 1.0000 100 chrXII:592366-592717 1.0000 100 chrXII:605174-605616 1.0000 100 chrXII:628100-628633 1.0000 100 chrXII:636713-639926 1.0000 100 chrXII:656844-657193 1.0000 100 chrXII:673544-674306 1.0000 100 chrXII:687646-687844 1.0000 100 chrXII:710562-711277 1.0000 100 chrXII:713136-713605 1.0000 100 chrXII:732009-732291 1.0000 100 chrXII:734576-734973 1.0000 100 chrXII:780835-781889 1.0000 100 chrXII:783924-784522 1.0000 100 chrXII:793732-795371 1.0000 100 chrXII:796370-797357 1.0000 100 chrXII:818503-820286 1.0000 100 chrXII:837673-839406 1.0000 100 chrXII:875180-875668 1.0000 100 chrXII:897665-898932 1.0000 100 chrXII:903412-903688 1.0000 100 chrXII:921685-921926 1.0000 100 chrXII:922092-922661 1.0000 100 chrXII:932066-932511 1.0000 100 chrXII:962589-963302 1.0000 100 chrXII:975802-976102 1.0000 100 chrXII:1017687-1019643 1.0000 100 chrXII:1019885-1020041 1.0000 100 chrXII:1028181-1028588 1.0000 100 chrXII:1051919-1052221 1.0000 100 chrXIII:91495-92087 1.0000 100 chrXIII:131557-132112 1.0000 100 chrXIII:145893-146289 1.0000 100 chrXIII:161901-164331 1.0000 100 chrXIII:168681-169007 1.0000 100 chrXIII:195942-196301 1.0000 100 chrXIII:224058-224726 1.0000 100 chrXIII:225112-225749 1.0000 100 chrXIII:259024-259484 1.0000 100 chrXIII:290557-291250 1.0000 100 chrXIII:296750-298873 1.0000 100 chrXIII:302825-303499 1.0000 100 chrXIII:306181-307132 1.0000 100 chrXIII:320965-321433 1.0000 100 chrXIII:352090-352609 1.0000 100 chrXIII:362945-363383 1.0000 100 chrXIII:372169-372778 1.0000 100 chrXIII:378875-379638 1.0000 100 chrXIII:420327-420868 1.0000 100 chrXIII:433539-433759 1.0000 100 chrXIII:463431-463854 1.0000 100 chrXIII:480405-480900 1.0000 100 chrXIII:504658-505242 1.0000 100 chrXIII:540443-540786 1.0000 100 chrXIII:550994-552261 1.0000 100 chrXIII:572617-573637 1.0000 100 chrXIII:586315-586895 1.0000 100 chrXIII:650809-651110 1.0000 100 chrXIII:731875-733552 1.0000 100 chrXIII:747673-748152 1.0000 100 chrXIII:752987-754960 1.0000 100 chrXIII:760458-762494 1.0000 100 chrXIII:768167-768445 1.0000 100 chrXIII:808050-808522 1.0000 100 chrXIII:837735-838188 1.0000 100 chrXIII:861208-861545 1.0000 100 chrXIII:872432-872929 1.0000 100 chrXIV:61955-64537 1.0000 100 chrXIV:96001-96462 1.0000 100 chrXIV:102584-103049 1.0000 100 chrXIV:104600-105145 1.0000 100 chrXIV:105462-105646 1.0000 100 chrXIV:241382-241826 1.0000 100 chrXIV:301516-302008 1.0000 100 chrXIV:330405-331164 1.0000 100 chrXIV:351438-353223 1.0000 100 chrXIV:374716-375086 1.0000 100 chrXIV:442869-443229 1.0000 100 chrXIV:443412-443991 1.0000 100 chrXIV:444171-444815 1.0000 100 chrXIV:495182-495616 1.0000 100 chrXIV:499182-500737 1.0000 100 chrXIV:518773-519132 1.0000 100 chrXIV:546556-547358 1.0000 100 chrXIV:560190-560789 1.0000 100 chrXIV:568052-568535 1.0000 100 chrXIV:569638-570048 1.0000 100 chrXIV:602072-602562 1.0000 100 chrXIV:631507-632015 1.0000 100 chrXIV:632496-632892 1.0000 100 chrXIV:725711-726360 1.0000 100 chrXIV:771934-772400 1.0000 100 chrXIV:783726-784319 1.0000 100 chrXV:79719-80167 1.0000 100 chrXV:92739-94799 1.0000 100 chrXV:109515-110665 1.0000 100 chrXV:110839-111406 1.0000 100 chrXV:113448-113879 1.0000 100 chrXV:159215-160144 1.0000 100 chrXV:161107-161906 1.0000 100 chrXV:167969-168454 1.0000 100 chrXV:216277-216733 1.0000 100 chrXV:226471-226877 1.0000 100 chrXV:228013-228524 1.0000 100 chrXV:231980-232290 1.0000 100 chrXV:253827-254102 1.0000 100 chrXV:274467-274977 1.0000 100 chrXV:281745-282937 1.0000 100 chrXV:288066-288401 1.0000 100 chrXV:300802-301774 1.0000 100 chrXV:340159-340679 1.0000 100 chrXV:353902-354315 1.0000 100 chrXV:391576-391883 1.0000 100 chrXV:424166-424602 1.0000 100 chrXV:438416-439438 1.0000 100 chrXV:444625-446311 1.0000 100 chrXV:464283-464737 1.0000 100 chrXV:487440-487719 1.0000 100 chrXV:505102-505521 1.0000 100 chrXV:571437-572155 1.0000 100 chrXV:594311-594630 1.0000 100 chrXV:639156-639432 1.0000 100 chrXV:663527-664790 1.0000 100 chrXV:671068-671475 1.0000 100 chrXV:678238-679171 1.0000 100 chrXV:710068-710456 1.0000 100 chrXV:779670-781002 1.0000 100 chrXV:796981-798761 1.0000 100 chrXV:854025-854821 1.0000 100 chrXV:866513-867092 1.0000 100 chrXV:881793-882392 1.0000 100 chrXV:901394-901634 1.0000 100 chrXV:904269-905188 1.0000 100 chrXV:908710-909116 1.0000 100 chrXV:925169-925428 1.0000 100 chrXV:968095-968477 1.0000 100 chrXV:976377-976700 1.0000 100 chrXV:978780-979212 1.0000 100 chrXV:979719-981442 1.0000 100 chrXV:988576-989551 1.0000 100 chrXV:1003925-1004974 1.0000 100 chrXV:1025709-1026070 1.0000 100 chrXV:1027765-1029117 1.0000 100 chrXVI:55835-56349 1.0000 100 chrXVI:75133-76868 1.0000 100 chrXVI:135528-135830 1.0000 100 chrXVI:188362-189094 1.0000 100 chrXVI:209980-210465 1.0000 100 chrXVI:279676-280239 1.0000 100 chrXVI:280541-282916 1.0000 100 chrXVI:302618-304454 1.0000 100 chrXVI:338772-339280 1.0000 100 chrXVI:339964-340799 1.0000 100 chrXVI:378645-379010 1.0000 100 chrXVI:406179-407977 1.0000 100 chrXVI:435121-436202 1.0000 100 chrXVI:519965-520562 1.0000 100 chrXVI:559967-560458 1.0000 100 chrXVI:571766-572509 1.0000 100 chrXVI:575197-575620 1.0000 100 chrXVI:581833-582400 1.0000 100 chrXVI:622255-622847 1.0000 100 chrXVI:688993-689869 1.0000 100 chrXVI:699686-700678 1.0000 100 chrXVI:718460-719383 1.0000 100 chrXVI:731894-732322 1.0000 100 chrXVI:732575-732740 1.0000 100 chrXVI:744072-744641 1.0000 100 chrXVI:769010-769470 1.0000 100 chrXVI:775647-776066 1.0000 100 chrXVI:794455-794830 1.0000 100 chrXVI:810581-811364 1.0000 100 chrXVI:819330-820219 1.0000 100 chrXVI:856815-857108 1.0000 100 chrXVI:860151-860679 1.0000 100 chrXVI:866476-866690 1.0000 100 chrXVI:880062-880543 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--CUP9/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--CUP9/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--CUP9/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 505 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 50500 N= 505 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--CUP9/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF GRATCGAACCSVKGAYCTYMNGRTTA MEME-1 width = 26 sites = 75 llr = 1409 E-value = 1.7e-283 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMNGRTTA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :55:::aa:1:3127:1:133:5116 pos.-specific C ::1:8:::a7641::7735433211: probability G a42::a:::143581:111:273123 matrix T ::1a2::::1::3:2317322::861 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * ** * Relative 1.4 * ****** * * Entropy 1.2 * ****** * * * * (27.1 bits) 1.0 * ******** * ** * 0.7 ** ******** * *** * * 0.5 ** ***************** *** * 0.2 ******************** ***** 0.0 -------------------------- Multilevel GAATCGAACCCCGGACCTCCCGATTA consensus GG T GATATT CTAACG GG sequence G TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMNGRTTA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrXIV:374716-375086 - 71 4.57e-12 CTGT GGATCGAACACAGGACCTCCAGATGA CTTGACCGAA chrXVI:880062-880543 + 56 6.38e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXII:1051919-1052221 + 63 6.38e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrVII:738843-739449 - 62 6.38e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrV:551040-551580 + 37 6.38e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrII:197224-197838 - 49 6.38e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXVI:622255-622847 + 51 2.22e-11 CGAATTCTGT GGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrXVI:559967-560458 + 48 2.22e-11 CGAATTCTGT GGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrXIII:352090-352609 - 34 2.22e-11 CGAATTCTGT GGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrVIII:358165-358802 + 57 2.22e-11 CGAATTCTGT GGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrVII:440555-440990 + 6 2.22e-11 TCTGT GGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrXVI:209980-210465 + 32 3.96e-11 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXI:140786-141336 + 19 3.96e-11 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrV:354795-355205 - 18 3.96e-11 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrV:176882-177437 - 24 3.96e-11 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrIV:1016986-1017510 + 21 3.96e-11 CCGAAGCGGG GAGTCGAACCCCGGTCTCCACGGTGA GAACGTGATG chrII:644963-645428 - 56 3.96e-11 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXVI:581833-582400 - 31 6.88e-11 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXIII:480405-480900 + 31 6.88e-11 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXII:214705-215067 + 59 6.88e-11 GACGCAACCG GAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrX:414774-415325 - 2 6.88e-11 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTA A chrVI:226421-226983 + 48 6.88e-11 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrV:311741-312279 + 75 6.88e-11 GACGCAACCG GAATCGAACCGATGACCTCTTCCTTG chrIII:151014-151606 + 36 6.88e-11 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXVI:860151-860679 - 47 1.33e-10 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrX:531478-532215 - 65 1.33e-10 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrX:396460-397027 + 45 1.33e-10 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVII:930742-931150 + 69 1.33e-10 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATGG CAACGT chrVI:180690-181257 + 63 1.33e-10 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXIII:747673-748152 + 42 1.50e-10 CTCACGATGG GGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXIII:131557-132112 + 53 1.50e-10 CTCACGATGG GGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrX:374180-374892 + 32 1.50e-10 CTCACGATGG GGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrIV:1095160-1095685 + 10 1.50e-10 GAACTCTGT GGATCGAACACAGGACCTCCAGATAT CTTGACCAAA chrII:405663-406217 - 22 1.50e-10 CTCACGATGG GGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXV:288066-288401 - 60 4.98e-10 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrXIII:837735-838188 - 68 4.98e-10 CGGGGGC GAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrXIII:168681-169007 - 52 4.98e-10 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrX:542751-543259 + 13 4.98e-10 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrVI:210433-210907 + 11 4.98e-10 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrVI:167273-167687 - 58 4.98e-10 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrXIV:104600-105145 - 18 6.97e-10 CTTCCAATCG GATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIX:325514-326132 - 10 6.97e-10 CTTCCAATCG GATTTGAACCGATGATCTCCACATTA CTAGTGTGG chrIX:174696-175465 - 36 6.97e-10 CTTCCAATCG GATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXV:464283-464737 - 54 1.07e-09 GGCGAGCTGG GAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrXIII:195942-196301 + 9 1.07e-09 CGAGCTGG GAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrVIII:388671-389217 + 11 1.07e-09 GGCGAGCTGG GAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrXVI:856815-857108 - 26 1.33e-09 GACGAGTCCG GAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXIII:320965-321433 + 10 1.33e-09 ACGAGTCCG GAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrVII:774131-774690 - 24 1.33e-09 GACGAGTCCG GAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrV:249784-250881 - 38 1.47e-09 GTCCTACCCG GATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrIII:168099-168547 + 40 1.47e-09 GTCCTACCCG GATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrVIII:475518-475909 + 55 1.80e-09 TTCCAACCGA GGATCGAACTCGGGACCTTTGCCGTG TGAAGGCAAC chrXIV:96001-96462 + 72 1.99e-09 AGCGGTACGA GAATCGAACCCGTGTCCCCACCTTGG AAG chrXIII:420327-420868 + 53 2.43e-09 ATTTCGCCCA GGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXIII:372169-372778 + 34 2.43e-09 ATTTCGCCCA GGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXI:379483-379917 - 66 2.43e-09 TTTCGCCCA GGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrVII:823350-823708 - 39 2.43e-09 ATTTCGCCCA GGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXVI:769010-769470 + 29 3.57e-09 CCTCATAGGG GGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXII:875180-875668 - 60 3.57e-09 CCTCATAGGG GGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXI:578730-579317 - 50 3.57e-09 CCTCATAGGG GGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrV:130864-131362 + 31 3.57e-09 GTCTTACCCG GATTCGAACCGGGGTTGTTCGGATCA AAACCGAAAG chrX:422681-423239 - 62 4.30e-09 CTCCAGGGGA GGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrVII:730971-731426 - 25 1.04e-08 ACCCCAGTGA GGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXI:302704-303243 - 63 1.99e-08 AAACGGACAG GAATTGAACCTGCAACCCTTCGATTG CAATCTTATT chrXIII:808050-808522 + 22 2.15e-08 GTCCCACCCG GATTCGAACTGGGGTTGTTCGGATCA GAACCGAAAG chrVIII:466973-467149 - 13 3.92e-08 CCACCTGCCA GAATTGAACTAGCGACCTTTGCATTA CAAGTGCAAC chrXV:710068-710456 - 23 4.21e-08 GCGCCGCTCG GTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrIII:149715-150252 - 21 4.21e-08 GCGCCGCTCG GTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrXVI:744072-744641 - 12 5.19e-08 CCACCTGTCA GAATTGAACTAACGACCTTTGCATTA CAAGTGCAAC chrXI:490723-491361 - 11 1.37e-07 TCCCCGCCAG GACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrXII:426889-427444 - 50 2.45e-07 CCGCGACGGG GAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrXI:513193-513517 + 39 2.45e-07 CCGCGACGGG GAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrX:204491-205029 - 59 2.45e-07 CCGCGACGGG GAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrIV:568641-569332 - 62 2.45e-07 CCGCGACGGG GAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrVII:483331-483664 - 30 1.10e-06 AACAAACCCG GTCTCGAAGCGGAGATCCGGCGATAA TTACCGCAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMNGRTTA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:374716-375086 4.6e-12 70_[-1]_4 chrXVI:880062-880543 6.4e-12 55_[+1]_19 chrXII:1051919-1052221 6.4e-12 62_[+1]_12 chrVII:738843-739449 6.4e-12 61_[-1]_13 chrV:551040-551580 6.4e-12 36_[+1]_38 chrII:197224-197838 6.4e-12 48_[-1]_26 chrXVI:622255-622847 2.2e-11 50_[+1]_24 chrXVI:559967-560458 2.2e-11 47_[+1]_27 chrXIII:352090-352609 2.2e-11 33_[-1]_41 chrVIII:358165-358802 2.2e-11 56_[+1]_18 chrVII:440555-440990 2.2e-11 5_[+1]_69 chrXVI:209980-210465 4e-11 31_[+1]_43 chrXI:140786-141336 4e-11 18_[+1]_56 chrV:354795-355205 4e-11 17_[-1]_57 chrV:176882-177437 4e-11 23_[-1]_51 chrIV:1016986-1017510 4e-11 20_[+1]_54 chrII:644963-645428 4e-11 55_[-1]_19 chrXVI:581833-582400 6.9e-11 30_[-1]_44 chrXIII:480405-480900 6.9e-11 30_[+1]_44 chrXII:214705-215067 6.9e-11 58_[+1]_16 chrX:414774-415325 6.9e-11 1_[-1]_73 chrVI:226421-226983 6.9e-11 47_[+1]_27 chrV:311741-312279 6.9e-11 74_[+1] chrIII:151014-151606 6.9e-11 35_[+1]_39 chrXVI:860151-860679 1.3e-10 46_[-1]_28 chrX:531478-532215 1.3e-10 64_[-1]_10 chrX:396460-397027 1.3e-10 44_[+1]_30 chrVII:930742-931150 1.3e-10 68_[+1]_6 chrVI:180690-181257 1.3e-10 62_[+1]_12 chrXIII:747673-748152 1.5e-10 41_[+1]_33 chrXIII:131557-132112 1.5e-10 52_[+1]_22 chrX:374180-374892 1.5e-10 31_[+1]_43 chrIV:1095160-1095685 1.5e-10 9_[+1]_65 chrII:405663-406217 1.5e-10 21_[-1]_53 chrXV:288066-288401 5e-10 59_[-1]_15 chrXIII:837735-838188 5e-10 67_[-1]_7 chrXIII:168681-169007 5e-10 51_[-1]_23 chrX:542751-543259 5e-10 12_[+1]_62 chrVI:210433-210907 5e-10 10_[+1]_64 chrVI:167273-167687 5e-10 57_[-1]_17 chrXIV:104600-105145 7e-10 17_[-1]_57 chrIX:325514-326132 7e-10 9_[-1]_65 chrIX:174696-175465 7e-10 35_[-1]_39 chrXV:464283-464737 1.1e-09 53_[-1]_21 chrXIII:195942-196301 1.1e-09 8_[+1]_66 chrVIII:388671-389217 1.1e-09 10_[+1]_64 chrXVI:856815-857108 1.3e-09 25_[-1]_49 chrXIII:320965-321433 1.3e-09 9_[+1]_65 chrVII:774131-774690 1.3e-09 23_[-1]_51 chrV:249784-250881 1.5e-09 37_[-1]_37 chrIII:168099-168547 1.5e-09 39_[+1]_35 chrVIII:475518-475909 1.8e-09 54_[+1]_20 chrXIV:96001-96462 2e-09 71_[+1]_3 chrXIII:420327-420868 2.4e-09 52_[+1]_22 chrXIII:372169-372778 2.4e-09 33_[+1]_41 chrXI:379483-379917 2.4e-09 65_[-1]_9 chrVII:823350-823708 2.4e-09 38_[-1]_36 chrXVI:769010-769470 3.6e-09 28_[+1]_46 chrXII:875180-875668 3.6e-09 59_[-1]_15 chrXI:578730-579317 3.6e-09 49_[-1]_25 chrV:130864-131362 3.6e-09 30_[+1]_44 chrX:422681-423239 4.3e-09 61_[-1]_13 chrVII:730971-731426 1e-08 24_[-1]_50 chrXI:302704-303243 2e-08 62_[-1]_12 chrXIII:808050-808522 2.2e-08 21_[+1]_53 chrVIII:466973-467149 3.9e-08 12_[-1]_62 chrXV:710068-710456 4.2e-08 22_[-1]_52 chrIII:149715-150252 4.2e-08 20_[-1]_54 chrXVI:744072-744641 5.2e-08 11_[-1]_63 chrXI:490723-491361 1.4e-07 10_[-1]_64 chrXII:426889-427444 2.4e-07 49_[-1]_25 chrXI:513193-513517 2.4e-07 38_[+1]_36 chrX:204491-205029 2.4e-07 58_[-1]_16 chrIV:568641-569332 2.4e-07 61_[-1]_13 chrVII:483331-483664 1.1e-06 29_[-1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMNGRTTA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRATCGAACCSVKGAYCTYMNGRTTA width=26 seqs=75 chrXIV:374716-375086 ( 71) GGATCGAACACAGGACCTCCAGATGA 1 chrXVI:880062-880543 ( 56) GGATCGAACCGCTGATCCCCGCGTTA 1 chrXII:1051919-1052221 ( 63) GGATCGAACCGCTGATCCCCGCGTTA 1 chrVII:738843-739449 ( 62) GGATCGAACCGCTGATCCCCGCGTTA 1 chrV:551040-551580 ( 37) GGATCGAACCGCTGATCCCCGCGTTA 1 chrII:197224-197838 ( 49) GGATCGAACCGCTGATCCCCGCGTTA 1 chrXVI:622255-622847 ( 51) GGATCGAACACAGGACCTCCAGATAA 1 chrXVI:559967-560458 ( 48) GGATCGAACACAGGACCTCCAGATAA 1 chrXIII:352090-352609 ( 34) GGATCGAACACAGGACCTCCAGATAA 1 chrVIII:358165-358802 ( 57) GGATCGAACACAGGACCTCCAGATAA 1 chrVII:440555-440990 ( 6) GGATCGAACACAGGACCTCCAGATAA 1 chrXVI:209980-210465 ( 32) GAGTCGAACCCCGGTCTCCACGGTGA 1 chrXI:140786-141336 ( 19) GAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:354795-355205 ( 18) GAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:176882-177437 ( 24) GAGTCGAACCCCGGTCTCCACGGTGA 1 chrIV:1016986-1017510 ( 21) GAGTCGAACCCCGGTCTCCACGGTGA 1 chrII:644963-645428 ( 56) GAGTCGAACCCCGGTCTCCACGGTGA 1 chrXVI:581833-582400 ( 31) GGCTCGAACCCCTAACCTTATGATTA 1 chrXIII:480405-480900 ( 31) GGCTCGAACCCCTAACCTTATGATTA 1 chrXII:214705-215067 ( 59) GAATCGAACCGATGACCTCTTCCTTG 1 chrX:414774-415325 ( 2) GGCTCGAACCCCTAACCTTATGATTA 1 chrVI:226421-226983 ( 48) GGCTCGAACCCCTAACCTTATGATTA 1 chrV:311741-312279 ( 75) GAATCGAACCGATGACCTCTTCCTTG 1 chrIII:151014-151606 ( 36) GGCTCGAACCCCTAACCTTATGATTA 1 chrXVI:860151-860679 ( 47) GAATCGAACCGGGGGCCCAACGATGG 1 chrX:531478-532215 ( 65) GAATCGAACCGGGGGCCCAACGATGG 1 chrX:396460-397027 ( 45) GAATCGAACCGGGGGCCCAACGATGG 1 chrVII:930742-931150 ( 69) GAATCGAACCGGGGGCCCAACGATGG 1 chrVI:180690-181257 ( 63) GAATCGAACCGGGGGCCCAACGATGG 1 chrXIII:747673-748152 ( 42) GGGTCGAACCCATAATCTTCTGATTA 1 chrXIII:131557-132112 ( 53) GGGTCGAACCCATAATCTTCTGATTA 1 chrX:374180-374892 ( 32) GGGTCGAACCCATAATCTTCTGATTA 1 chrIV:1095160-1095685 ( 10) GGATCGAACACAGGACCTCCAGATAT 1 chrII:405663-406217 ( 22) GGGTCGAACCCATAATCTTCTGATTA 1 chrXV:288066-288401 ( 60) GAGTCGAACGCCCGATCTCAAGATTT 1 chrXIII:837735-838188 ( 68) GAGTCGAACGCCCGATCTCAAGATTT 1 chrXIII:168681-169007 ( 52) GAGTCGAACGCCCGATCTCAAGATTT 1 chrX:542751-543259 ( 13) GAGTCGAACGCCCGATCTCAAGATTT 1 chrVI:210433-210907 ( 11) GAGTCGAACGCCCGATCTCAAGATTT 1 chrVI:167273-167687 ( 58) GAGTCGAACGCCCGATCTCAAGATTT 1 chrXIV:104600-105145 ( 18) GATTTGAACCGATGATCTCCACATTA 1 chrIX:325514-326132 ( 10) GATTTGAACCGATGATCTCCACATTA 1 chrIX:174696-175465 ( 36) GATTTGAACCGATGATCTCCACATTA 1 chrXV:464283-464737 ( 54) GAATTGAACCCAGGGCCTCTCGCATG 1 chrXIII:195942-196301 ( 9) GAATTGAACCCAGGGCCTCTCGCATG 1 chrVIII:388671-389217 ( 11) GAATTGAACCCAGGGCCTCTCGCATG 1 chrXVI:856815-857108 ( 26) GAATCGAACCGGAGACCTCTCCCATG 1 chrXIII:320965-321433 ( 10) GAATCGAACCGGAGACCTCTCCCATG 1 chrVII:774131-774690 ( 24) GAATCGAACCGGAGACCTCTCCCATG 1 chrV:249784-250881 ( 38) GATTCGAACCGGGGTTGTCCGGATCA 1 chrIII:168099-168547 ( 40) GATTCGAACCGGGGTTGTCCGGATCA 1 chrVIII:475518-475909 ( 55) GGATCGAACTCGGGACCTTTGCCGTG 1 chrXIV:96001-96462 ( 72) GAATCGAACCCGTGTCCCCACCTTGG 1 chrXIII:420327-420868 ( 53) GGATCGAACTGGGGACGTTCTGCGTG 1 chrXIII:372169-372778 ( 34) GGATCGAACTGGGGACGTTCTGCGTG 1 chrXI:379483-379917 ( 66) GGATCGAACTGGGGACGTTCTGCGTG 1 chrVII:823350-823708 ( 39) GGATCGAACTGGGGACGTTCTGCGTG 1 chrXVI:769010-769470 ( 29) GGCTCGAACCCCTGACATTTCGGTAT 1 chrXII:875180-875668 ( 60) GGCTCGAACCCCTGACATTTCGGTAT 1 chrXI:578730-579317 ( 50) GGCTCGAACCCCTGACATTTCGGTAT 1 chrV:130864-131362 ( 31) GATTCGAACCGGGGTTGTTCGGATCA 1 chrX:422681-423239 ( 62) GGTTCGAACTCTCGACCTTCAGATTA 1 chrVII:730971-731426 ( 25) GGGTTGAACTCACGATCTTGCGATTA 1 chrXI:302704-303243 ( 63) GAATTGAACCTGCAACCCTTCGATTG 1 chrXIII:808050-808522 ( 22) GATTCGAACTGGGGTTGTTCGGATCA 1 chrVIII:466973-467149 ( 13) GAATTGAACTAGCGACCTTTGCATTA 1 chrXV:710068-710456 ( 23) GTTTCGATCCGAGGACATCAGGGTTA 1 chrIII:149715-150252 ( 21) GTTTCGATCCGAGGACATCAGGGTTA 1 chrXVI:744072-744641 ( 12) GAATTGAACTAACGACCTTTGCATTA 1 chrXI:490723-491361 ( 11) GACTTGAACCTGGAATCTTCTGGTTC 1 chrXII:426889-427444 ( 50) GAATTGAACCCCGATCTGGCACGCGA 1 chrXI:513193-513517 ( 39) GAATTGAACCCCGATCTGGCACGCGA 1 chrX:204491-205029 ( 59) GAATTGAACCCCGATCTGGCACGCGA 1 chrIV:568641-569332 ( 62) GAATTGAACCCCGATCTGGCACGCGA 1 chrVII:483331-483664 ( 30) GTCTCGAAGCGGAGATCCGGCGATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMNGRTTA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 37875 bayes= 9.15768 E= 1.7e-283 -1287 -1287 240 -1287 82 -1287 112 -295 71 -51 25 -122 -1287 -1287 -1287 169 -1287 207 -1287 -63 -1287 -1287 240 -1287 169 -1287 -1287 -1287 165 -1287 -1287 -354 -1287 238 -383 -1287 -173 187 -125 -122 -354 156 102 -354 -2 102 63 -453 -254 -37 138 -2 -63 -1287 207 -1287 116 -1287 -83 -63 -1287 181 -1287 11 -222 187 -83 -122 -1287 41 -183 116 -222 149 -151 11 11 121 -283 -63 -15 75 -3 -54 -1287 56 192 -1287 78 -13 56 -453 -195 -183 -151 137 -122 -183 25 92 92 -383 49 -122 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMNGRTTA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 75 E= 1.7e-283 0.000000 0.000000 1.000000 0.000000 0.546667 0.000000 0.413333 0.040000 0.506667 0.133333 0.226667 0.133333 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.973333 0.000000 0.000000 0.026667 0.000000 0.986667 0.013333 0.000000 0.093333 0.693333 0.080000 0.133333 0.026667 0.560000 0.386667 0.026667 0.306667 0.386667 0.293333 0.013333 0.053333 0.146667 0.493333 0.306667 0.200000 0.000000 0.800000 0.000000 0.693333 0.000000 0.106667 0.200000 0.000000 0.666667 0.000000 0.333333 0.066667 0.693333 0.106667 0.133333 0.000000 0.253333 0.053333 0.693333 0.066667 0.533333 0.066667 0.333333 0.333333 0.440000 0.026667 0.200000 0.280000 0.320000 0.186667 0.213333 0.000000 0.280000 0.720000 0.000000 0.533333 0.173333 0.280000 0.013333 0.080000 0.053333 0.066667 0.800000 0.133333 0.053333 0.226667 0.586667 0.586667 0.013333 0.266667 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMNGRTTA MEME-1 regular expression -------------------------------------------------------------------------------- G[AG][AG]T[CT]GAACC[CG][CAG][GT][GA][AT][CT]C[TC][CT][CAT][CAT][GC][AG]T[TG][AG] -------------------------------------------------------------------------------- Time 244.22 secs. ******************************************************************************** ******************************************************************************** MOTIF GNNSSCTYWAMCMACTRRRCYAHVRVRSC MEME-2 width = 29 sites = 76 llr = 1260 E-value = 3.4e-211 ******************************************************************************** -------------------------------------------------------------------------------- Motif GNNSSCTYWAMCMACTRRRCYAHVRVRSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 13312112465:3a::434::a3344312 pos.-specific C 12253614:15a5:8:22:a6:4322258 probability G 63245:2::2::2:::356::::233441 matrix T 223::36462::::2a1:::4:31111:: bits 2.4 * * 2.2 * * 1.9 * * 1.7 * ** * * Relative 1.4 * *** * * Entropy 1.2 * *** **** * (23.9 bits) 1.0 * * ** *** **** * 0.7 * *** * ** *** ***** ** 0.5 * *** * ****** ****** *** 0.2 * ************************** 0.0 ----------------------------- Multilevel GAACGCTTTAACCACTAGGCCACCAAGCC consensus GTGCT CA C A GAA T AAGGAG sequence CC TG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNNSSCTYWAMCMACTRRRCYAHVRVRSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:602072-602562 - 45 9.51e-12 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC ATTGTTATCT chrXIII:320965-321433 + 42 9.51e-12 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC GATTTGTATT chrXII:656844-657193 + 10 9.51e-12 ATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC AATTTTCTTG chrVII:738843-739449 - 26 9.51e-12 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC TATTTTTTTC chrV:551040-551580 + 70 9.51e-12 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC TG chrII:197224-197838 - 13 9.51e-12 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC TTGATTACTG chrXII:875180-875668 - 2 2.90e-10 CTTAAAAGCC GAACGCTCTACCAACTGAGCTAACAAGGA T chrVII:115276-115719 - 41 2.90e-10 CTTAAAAGCC GAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrX:617692-618136 - 55 3.90e-10 ACCTAAATCT GACGCCTTAAACCACTCGGCCAAACTCCC ATTGTTTGTT chrV:288203-288760 + 65 3.90e-10 ATTTCAAGTC TGTCGCCTTAACCACTCGGCCATAGTGCC TATCATT chrXI:84016-84435 - 33 4.50e-10 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC ATACAAATTT chrX:424295-424717 + 31 4.50e-10 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrIV:519654-519915 - 9 4.50e-10 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC GTAAAATC chrXV:274467-274977 - 1 5.19e-10 AATAGCAGGG CATCGCCTTAACCACTCGGCCACTGGGAC chrIV:1150688-1151173 + 33 5.19e-10 AAATAGCAGG CATCGCCTTAACCACTCGGCCACTGGGAC TGAAACACTT chrIII:227756-228218 - 5 5.98e-10 CATTCGAGTC TCTCGCCTTAACCACTCGGCCATAGTGCC ATTT chrXIII:372169-372778 + 67 6.88e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC AGGTT chrXII:605174-605616 + 59 6.88e-10 GCTATAAGCA CGAAGCTCTAACCACTGAGCTACACGAGC ATTTTCGAAA chrXI:379483-379917 - 30 6.88e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC TATTAATCTG chrXI:308015-308434 + 15 6.88e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrX:378145-378580 - 48 6.88e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC TATTAATTTA chrVII:823350-823708 - 3 6.88e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC AC chrV:469239-469689 - 43 6.88e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC AATTATTTCT chrXV:353902-354315 + 27 9.04e-10 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGC AGTAAACCGT chrIX:174696-175465 - 1 9.04e-10 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGC chrXIV:442869-443229 - 7 2.54e-09 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACTTAT chrXII:628100-628633 - 67 2.54e-09 AATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXIII:259024-259484 + 7 6.53e-09 CTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCC ATACTAACTT chrVIII:132789-133343 + 63 6.53e-09 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCC ACTTATTAT chrXIII:480405-480900 + 63 1.02e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TACTTATTG chrVII:122000-122519 - 60 1.02e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TAATTCGTTG chrIX:299979-300653 + 6 1.02e-08 GAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TATTTCGTTG chrIII:151014-151606 + 68 1.02e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TCTT chrX:422681-423239 - 27 1.13e-08 ATTATGAGAC TGACGCTCTTCCTACTGAGCTACTGAAGC ATACAAAGGA chrX:390933-391338 + 2 1.13e-08 C TGACGCTCTTCCTACTGAGCTACTGAAGC ACTATTTCTT chrIV:1175584-1176094 - 40 1.13e-08 ATTATGAGAC TGACGCTCTTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrXIV:374716-375086 - 18 1.26e-08 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAGTCCGC TTATTTTTCT chrIV:1095160-1095685 + 61 1.26e-08 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAGTCCGC TAACATAAGA chrXIII:195942-196301 + 71 1.55e-08 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCC T chrXII:92415-92716 - 33 1.55e-08 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCC TTATTAACTT chrVIII:237746-238088 + 44 1.55e-08 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrVII:440555-440990 + 57 1.55e-08 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC ATATATTTTA chrI:138924-139349 - 66 1.55e-08 CCAAAG CGAGAATCATACCACTAGACCACACGCCC GTACTAATTG chrXIII:808050-808522 + 53 2.10e-08 GATCAGAACC GAAAGTGATAACCACTACACTATAGGACC TTTTTCTTCT chrXII:448498-448958 + 15 2.10e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC GGAACTTCTT chrXI:74440-74807 - 51 2.10e-08 TTAACAGTCG CACGCCTTAACCAACTTGGCCATGGAGTC TAATTGCTAT chrVIII:133970-134634 - 69 2.10e-08 ACC GAAAGTGATAACCACTACACTATAGGACC GGAACTTACT chrV:249784-250881 - 4 2.10e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC AGT chrIII:168099-168547 + 71 2.10e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC A chrIII:127545-127897 - 45 2.10e-08 TTAACAGTCG CACGCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrXV:288066-288401 - 9 2.56e-08 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG AAGCTATT chrXIII:837735-838188 - 17 2.56e-08 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG TCAATTAACT chrXIII:168681-169007 - 1 2.56e-08 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG chrX:542751-543259 + 61 2.56e-08 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG TATTTAATTG chrVI:210433-210907 + 59 2.56e-08 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG TCGTTTTTGT chrVI:167273-167687 - 7 2.56e-08 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG TCGTTT chrXVI:860151-860679 - 14 3.76e-08 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrXV:226471-226877 + 29 3.76e-08 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TGAATTTCTT chrX:531478-532215 - 32 3.76e-08 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TCACTAATTG chrVI:162027-162397 - 66 3.76e-08 GGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrV:130864-131362 + 62 3.76e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAAAACC TCTTAATTAT chrII:350595-351068 - 46 3.76e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAAAACC CTTTTATTGA chrXII:426889-427444 - 16 8.40e-08 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA TAAGAAACAC chrXI:513193-513517 + 70 8.40e-08 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AC chrX:355204-355730 - 39 8.40e-08 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrX:204491-205029 - 25 8.40e-08 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA TTTTTATGTT chrVII:544400-544907 + 17 8.40e-08 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGAAATATCT chrVII:531400-531796 - 62 8.40e-08 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGTAACTCGA chrIV:568641-569332 - 28 8.40e-08 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrII:405663-406217 - 70 8.40e-08 GC GCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrII:326507-327246 + 11 9.95e-08 GTGTAAAGGC GACGTCTTGAACCACTGGACCATTGGACC CGGAACTCGA chrX:233727-234121 - 65 1.75e-07 CGTAGCC AGACGCCGTGACCATTGGGCCACGAGGAA CAAGAATATA chrIV:619706-620398 + 11 1.75e-07 GTTCGTAGCC AGACGCCGTGACCATTGGGCCACGAGGAA CAAGATTTCT chrIII:123484-123807 + 25 4.50e-07 GCACCCTAAG CGAGAATCATACCTCTAGACCACACGCCC TCCTTTGAAA chrV:270138-270690 - 44 9.11e-07 GACTTTCGCT GTTCCCGCTTACGACTACGCTCCCCCGCT AGGTTCCCTT chrX:745097-745747 - 68 2.23e-06 CCAA TTACCCATATCCAACTCCACTACCATTAC CCTACTATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNNSSCTYWAMCMACTRRRCYAHVRVRSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602072-602562 9.5e-12 44_[-2]_27 chrXIII:320965-321433 9.5e-12 41_[+2]_30 chrXII:656844-657193 9.5e-12 9_[+2]_62 chrVII:738843-739449 9.5e-12 25_[-2]_46 chrV:551040-551580 9.5e-12 69_[+2]_2 chrII:197224-197838 9.5e-12 12_[-2]_59 chrXII:875180-875668 2.9e-10 1_[-2]_70 chrVII:115276-115719 2.9e-10 40_[-2]_31 chrX:617692-618136 3.9e-10 54_[-2]_17 chrV:288203-288760 3.9e-10 64_[+2]_7 chrXI:84016-84435 4.5e-10 32_[-2]_39 chrX:424295-424717 4.5e-10 30_[+2]_41 chrIV:519654-519915 4.5e-10 8_[-2]_63 chrXV:274467-274977 5.2e-10 [-2]_71 chrIV:1150688-1151173 5.2e-10 32_[+2]_39 chrIII:227756-228218 6e-10 4_[-2]_67 chrXIII:372169-372778 6.9e-10 66_[+2]_5 chrXII:605174-605616 6.9e-10 58_[+2]_13 chrXI:379483-379917 6.9e-10 29_[-2]_42 chrXI:308015-308434 6.9e-10 14_[+2]_57 chrX:378145-378580 6.9e-10 47_[-2]_24 chrVII:823350-823708 6.9e-10 2_[-2]_69 chrV:469239-469689 6.9e-10 42_[-2]_29 chrXV:353902-354315 9e-10 26_[+2]_45 chrIX:174696-175465 9e-10 [-2]_71 chrXIV:442869-443229 2.5e-09 6_[-2]_65 chrXII:628100-628633 2.5e-09 66_[-2]_5 chrXIII:259024-259484 6.5e-09 6_[+2]_65 chrVIII:132789-133343 6.5e-09 62_[+2]_9 chrXIII:480405-480900 1e-08 62_[+2]_9 chrVII:122000-122519 1e-08 59_[-2]_12 chrIX:299979-300653 1e-08 5_[+2]_66 chrIII:151014-151606 1e-08 67_[+2]_4 chrX:422681-423239 1.1e-08 26_[-2]_45 chrX:390933-391338 1.1e-08 1_[+2]_70 chrIV:1175584-1176094 1.1e-08 39_[-2]_32 chrXIV:374716-375086 1.3e-08 17_[-2]_54 chrIV:1095160-1095685 1.3e-08 60_[+2]_11 chrXIII:195942-196301 1.5e-08 70_[+2]_1 chrXII:92415-92716 1.5e-08 32_[-2]_39 chrVIII:237746-238088 1.5e-08 43_[+2]_28 chrVII:440555-440990 1.5e-08 56_[+2]_15 chrI:138924-139349 1.5e-08 65_[-2]_6 chrXIII:808050-808522 2.1e-08 52_[+2]_19 chrXII:448498-448958 2.1e-08 14_[+2]_57 chrXI:74440-74807 2.1e-08 50_[-2]_21 chrVIII:133970-134634 2.1e-08 68_[-2]_3 chrV:249784-250881 2.1e-08 3_[-2]_68 chrIII:168099-168547 2.1e-08 70_[+2]_1 chrIII:127545-127897 2.1e-08 44_[-2]_27 chrXV:288066-288401 2.6e-08 8_[-2]_63 chrXIII:837735-838188 2.6e-08 16_[-2]_55 chrXIII:168681-169007 2.6e-08 [-2]_71 chrX:542751-543259 2.6e-08 60_[+2]_11 chrVI:210433-210907 2.6e-08 58_[+2]_13 chrVI:167273-167687 2.6e-08 6_[-2]_65 chrXVI:860151-860679 3.8e-08 13_[-2]_58 chrXV:226471-226877 3.8e-08 28_[+2]_43 chrX:531478-532215 3.8e-08 31_[-2]_40 chrVI:162027-162397 3.8e-08 65_[-2]_6 chrV:130864-131362 3.8e-08 61_[+2]_10 chrII:350595-351068 3.8e-08 45_[-2]_26 chrXII:426889-427444 8.4e-08 15_[-2]_56 chrXI:513193-513517 8.4e-08 69_[+2]_2 chrX:355204-355730 8.4e-08 38_[-2]_33 chrX:204491-205029 8.4e-08 24_[-2]_47 chrVII:544400-544907 8.4e-08 16_[+2]_55 chrVII:531400-531796 8.4e-08 61_[-2]_10 chrIV:568641-569332 8.4e-08 27_[-2]_44 chrII:405663-406217 8.4e-08 69_[-2]_2 chrII:326507-327246 9.9e-08 10_[+2]_61 chrX:233727-234121 1.7e-07 64_[-2]_7 chrIV:619706-620398 1.7e-07 10_[+2]_61 chrIII:123484-123807 4.5e-07 24_[+2]_47 chrV:270138-270690 9.1e-07 43_[-2]_28 chrX:745097-745747 2.2e-06 67_[-2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNNSSCTYWAMCMACTRRRCYAHVRVRSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GNNSSCTYWAMCMACTRRRCYAHVRVRSC width=29 seqs=76 chrXIV:602072-602562 ( 45) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXIII:320965-321433 ( 42) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrXII:656844-657193 ( 10) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrVII:738843-739449 ( 26) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrV:551040-551580 ( 70) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrII:197224-197838 ( 13) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:875180-875668 ( 2) GAACGCTCTACCAACTGAGCTAACAAGGA 1 chrVII:115276-115719 ( 41) GAACGCTCTACCAACTGAGCTAACAAGGA 1 chrX:617692-618136 ( 55) GACGCCTTAAACCACTCGGCCAAACTCCC 1 chrV:288203-288760 ( 65) TGTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXI:84016-84435 ( 33) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrX:424295-424717 ( 31) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrIV:519654-519915 ( 9) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXV:274467-274977 ( 1) CATCGCCTTAACCACTCGGCCACTGGGAC 1 chrIV:1150688-1151173 ( 33) CATCGCCTTAACCACTCGGCCACTGGGAC 1 chrIII:227756-228218 ( 5) TCTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXIII:372169-372778 ( 67) GATGCCATAACCGACTAGACCACGAAACC 1 chrXII:605174-605616 ( 59) CGAAGCTCTAACCACTGAGCTACACGAGC 1 chrXI:379483-379917 ( 30) GATGCCATAACCGACTAGACCACGAAACC 1 chrXI:308015-308434 ( 15) GATGCCATAACCGACTAGACCACGAAACC 1 chrX:378145-378580 ( 48) GATGCCATAACCGACTAGACCACGAAACC 1 chrVII:823350-823708 ( 3) GATGCCATAACCGACTAGACCACGAAACC 1 chrV:469239-469689 ( 43) GATGCCATAACCGACTAGACCACGAAACC 1 chrXV:353902-354315 ( 27) TGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIX:174696-175465 ( 1) TGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXIV:442869-443229 ( 7) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXII:628100-628633 ( 67) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXIII:259024-259484 ( 7) TTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrVIII:132789-133343 ( 63) TTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXIII:480405-480900 ( 63) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVII:122000-122519 ( 60) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIX:299979-300653 ( 6) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIII:151014-151606 ( 68) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrX:422681-423239 ( 27) TGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrX:390933-391338 ( 2) TGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrIV:1175584-1176094 ( 40) TGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrXIV:374716-375086 ( 18) TGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrIV:1095160-1095685 ( 61) TGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrXIII:195942-196301 ( 71) CGAGAATCATACCACTAGACCACACGCCC 1 chrXII:92415-92716 ( 33) CGAGAATCATACCACTAGACCACACGCCC 1 chrVIII:237746-238088 ( 44) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVII:440555-440990 ( 57) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrI:138924-139349 ( 66) CGAGAATCATACCACTAGACCACACGCCC 1 chrXIII:808050-808522 ( 53) GAAAGTGATAACCACTACACTATAGGACC 1 chrXII:448498-448958 ( 15) GAAAGTGATAACCACTACACTATAGGACC 1 chrXI:74440-74807 ( 51) CACGCCTTAACCAACTTGGCCATGGAGTC 1 chrVIII:133970-134634 ( 69) GAAAGTGATAACCACTACACTATAGGACC 1 chrV:249784-250881 ( 4) GAAAGTGATAACCACTACACTATAGGACC 1 chrIII:168099-168547 ( 71) GAAAGTGATAACCACTACACTATAGGACC 1 chrIII:127545-127897 ( 45) CACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXV:288066-288401 ( 9) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrXIII:837735-838188 ( 17) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrXIII:168681-169007 ( 1) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrX:542751-543259 ( 61) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:210433-210907 ( 59) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:167273-167687 ( 7) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrXVI:860151-860679 ( 14) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrXV:226471-226877 ( 29) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrX:531478-532215 ( 32) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:162027-162397 ( 66) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrV:130864-131362 ( 62) GAAAGTGATAACCACTACACTATAAAACC 1 chrII:350595-351068 ( 46) GAAAGTGATAACCACTACACTATAAAACC 1 chrXII:426889-427444 ( 16) GCCCATTCTGACCATTAAACTATCACGGA 1 chrXI:513193-513517 ( 70) GCCCATTCTGACCATTAAACTATCACGGA 1 chrX:355204-355730 ( 39) GCCCATTCTGACCATTAAACTATCACGGA 1 chrX:204491-205029 ( 25) GCCCATTCTGACCATTAAACTATCACGGA 1 chrVII:544400-544907 ( 17) GCCCATTCTGACCATTAAACTATCACGGA 1 chrVII:531400-531796 ( 62) GCCCATTCTGACCATTAAACTATCACGGA 1 chrIV:568641-569332 ( 28) GCCCATTCTGACCATTAAACTATCACGGA 1 chrII:405663-406217 ( 70) GCCCATTCTGACCATTAAACTATCACGGA 1 chrII:326507-327246 ( 11) GACGTCTTGAACCACTGGACCATTGGACC 1 chrX:233727-234121 ( 65) AGACGCCGTGACCATTGGGCCACGAGGAA 1 chrIV:619706-620398 ( 11) AGACGCCGTGACCATTGGGCCACGAGGAA 1 chrIII:123484-123807 ( 25) CGAGAATCATACCTCTAGACCACACGCCC 1 chrV:270138-270690 ( 44) GTTCCCGCTTACGACTACGCTCCCCCGCT 1 chrX:745097-745747 ( 68) TTACCCATATCCAACTCCACTACCATTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNNSSCTYWAMCMACTRRRCYAHVRVRSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 36360 bayes= 9.09432 E= 3.4e-211 -197 -68 170 -75 -3 32 67 -97 3 23 -5 -17 -156 150 90 -1289 -97 85 136 -455 -156 170 -1289 -17 -175 -53 -5 93 -86 101 -285 44 30 -1289 -385 97 90 -185 5 -86 76 132 -1289 -1289 -1289 240 -1289 -1289 -17 143 -15 -297 163 -1289 -285 -455 -1289 210 -1289 -75 -1289 -1289 -1289 169 44 -15 54 -124 -10 5 143 -1289 40 -1289 164 -1289 -1289 240 -1289 -1289 -1289 157 -1289 49 167 -385 -1289 -1289 -10 115 -1289 -10 -3 79 32 -124 30 -5 67 -124 30 15 79 -197 14 5 110 -256 -110 128 95 -356 -97 198 -127 -455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNNSSCTYWAMCMACTRRRCYAHVRVRSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 76 E= 3.4e-211 0.078947 0.118421 0.618421 0.184211 0.302632 0.236842 0.302632 0.157895 0.315789 0.223684 0.184211 0.276316 0.105263 0.539474 0.355263 0.000000 0.157895 0.342105 0.486842 0.013158 0.105263 0.618421 0.000000 0.276316 0.092105 0.131579 0.184211 0.592105 0.171053 0.381579 0.026316 0.421053 0.381579 0.000000 0.013158 0.605263 0.578947 0.052632 0.197368 0.171053 0.526316 0.473684 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.276316 0.513158 0.171053 0.039474 0.960526 0.000000 0.026316 0.013158 0.000000 0.815789 0.000000 0.184211 0.000000 0.000000 0.000000 1.000000 0.421053 0.171053 0.276316 0.131579 0.289474 0.197368 0.513158 0.000000 0.407895 0.000000 0.592105 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.565789 0.000000 0.434211 0.986842 0.013158 0.000000 0.000000 0.289474 0.421053 0.000000 0.289474 0.302632 0.328947 0.236842 0.131579 0.381579 0.184211 0.302632 0.131579 0.381579 0.210526 0.328947 0.078947 0.342105 0.197368 0.407895 0.052632 0.144737 0.460526 0.368421 0.026316 0.157895 0.750000 0.078947 0.013158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNNSSCTYWAMCMACTRRRCYAHVRVRSC MEME-2 regular expression -------------------------------------------------------------------------------- G[AGC][ATC][CG][GC][CT]T[TC][TA]A[AC]C[CA]ACT[AG][GA][GA]C[CT]A[CAT][CAG][AG][AGC][GA][CG]C -------------------------------------------------------------------------------- Time 470.56 secs. ******************************************************************************** ******************************************************************************** MOTIF CAYCCRTACAYCHYA MEME-3 width = 15 sites = 80 llr = 876 E-value = 9.1e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAYCCRTACAYCHYA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 29:1:417:9:1415 pos.-specific C 8:6a9:2:a156252 probability G :1:::5:3::::121 matrix T ::4:118:::53331 bits 2.4 * 2.2 * * 1.9 ** * 1.7 ** * Relative 1.4 * ** * Entropy 1.2 ***** ** (15.8 bits) 1.0 ***** *** 0.7 ************ 0.5 ************ * 0.2 ************ ** 0.0 --------------- Multilevel CACCCGTACATCACA consensus T A G CTTTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCRTACAYCHYA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXV:639156-639432 - 70 2.86e-10 ACTACTTTTA CACCCGTACACCACA CATACAACCG chrX:690555-690865 + 56 9.24e-10 GTCATCAACA CACCCGTACACCACC ATGTGCGTTA chrXI:614162-614450 + 48 9.46e-09 ATGACTGCAA CACCCGCACACCACA AGGTGAAGGG chrVII:371201-371546 + 33 1.22e-08 AAAATACCGG CACCCATGCACCTCA CACCGCCGCA chrV:69074-69338 - 21 2.41e-08 GCCGAGCATG CACCCGTACCCCACA AAGCTTCGCT chrXII:5580-5797 + 29 3.12e-08 ATATACACCA CACCCACACACCACA CCCACACCAC chrXI:666610-666783 - 45 3.12e-08 ACACACCACA CACCCACACACCACA CCCACACACC chrX:545406-545730 - 36 3.12e-08 AAAAGACAGC CACCCATGCACCGCA CTCGCACGTG chrI:81884-82345 - 43 4.58e-08 ACTGTTGGTA CATCCGTGCACCTCC GCTAGATGAG chrXIII:650809-651110 + 73 5.55e-08 GACTGTTTTA CACCCGTACATTTCA CAGTTTTTTT chrIV:229444-229889 + 39 1.41e-07 TTACACAAAA CATCCGTACATCAGA AGGATTATAT chrXII:932066-932511 - 18 1.67e-07 TACATCCGTA CATCCGTACATCTGA ACACAAAAAA chrXVI:866476-866690 - 52 2.23e-07 AACGGAAATA CACCCATACACCAAA CCTCTGTGAA chrXIII:145893-146289 + 44 2.23e-07 CATTTTTGTA CATCCATACACCATA CACCATACAC chrXV:901394-901634 - 73 3.52e-07 CGGGACTGTT CACCCGTACATTTTA CGTTTCCGAC chrXIV:783726-784319 - 62 3.52e-07 ACACACACCA CACCCACACACTACC CTAACACTAC chrIV:538876-539281 + 78 3.52e-07 TGAATTATCA CACCCACACCCCTCA TTCAATCC chrIV:125326-125676 - 24 3.52e-07 TGGGAACTTG AACCCATACACCGCA CCAAATTATT chrXII:1028181-1028588 + 65 4.04e-07 GACAAAATAT CACCCATGCACCAAA ATGTATGGGT chrX:160023-160278 + 75 4.04e-07 ATGTGTGACA CACCCATACCCCATA ATGTTGCACG chrXII:921685-921926 - 82 4.65e-07 TATG CACCCGTGCCCCCGC TGTAGTAGCC chrVIII:505814-506213 - 35 5.37e-07 GACAATTATG CATCCATACATTTCA CCCAGACATT chrXIII:550994-552261 + 43 6.15e-07 TACATATTGG CACCCATACATTATA AAATCATCTC chrVIII:125877-126326 + 52 6.15e-07 GACGTTAATG CATCCGTACACCTAC ATCTTTACAT chrIV:358043-358419 - 65 7.91e-07 GTGTACACAC CACCCATACATTATC TGACAAGGAA chrXVI:378645-379010 - 60 1.01e-06 TCAGAGAAAA CATCCGTACATTCGA GTTCTCATTG chrXI:67750-68095 + 42 1.01e-06 CCCGTGCTGA AATCCGTGCACCGCA TCAAATTTTC chrXV:79719-80167 - 52 1.14e-06 TCCATGTAAA CACCCGTACATATTA AATAAGTGAC chrII:44935-45387 + 60 1.28e-06 GACAATCATG CATCCGTACATTCTA TGTATGTTTG chrXV:167969-168454 + 47 1.44e-06 TGTTTAAAGC CGCCCACACATCACA TTGAGAACGA chrXII:922092-922661 + 20 1.44e-06 TTGAAATTGA CACCCGTACATATTC CAATTCTCGT chrXV:253827-254102 - 61 1.61e-06 AAACTTTTTT AATCCGTACACCGCG CGTATAAATC chrXV:968095-968477 - 30 1.80e-06 GAGCAGCGCA CGCCCACGCACCCCA CGCTTTTGAG chrXI:382199-382473 + 20 1.80e-06 GCTGCTGTTG CATCCGGACATCACA CCCAACACAA chrXVI:794455-794830 + 46 2.00e-06 CATAAAGTAA CATCCGAACATCTCC AAACACCCAT chrXII:903412-903688 + 23 2.00e-06 AGAAGCATTG GACCCATGCACCACA TGCATTAGGA chrVII:1000310-1000605 + 52 2.25e-06 ACTAGGATAG CACCCAAACACCTGC ATATTTGGAC chrII:592879-593294 - 46 2.25e-06 TCTTTTCTTG CATCCATACATCTTT GAACTCCATA chrVII:592455-592702 + 85 2.78e-06 TTTTTTCTCT CGCCCGTGCCTCTCC G chrII:415496-415945 - 10 2.78e-06 TCCTTTTTTA CACCCATGCATTTTG TCATCCAGA chrX:90037-90450 + 69 3.07e-06 TGAACATTCT CACCCATACATGGCC TTGTTTTTTT chrVIII:296830-297242 + 72 4.14e-06 CAATTTCGTC CACCAGTACATCACA GCATGCTCTC chrIV:1355726-1356032 - 31 4.14e-06 CTCCCTGTAA CATCCATACATTCGG TTAAAATTAC chrIV:1300878-1301348 + 47 4.14e-06 TTCCTTCAAA CATCCGTGCACTGTG GATGTTTGGG chrXVI:699686-700678 + 3 4.57e-06 CG AATCCTTACATCACA CCCAATCCCC chrVIII:133970-134634 - 14 4.57e-06 TCGAATACGT CATCCTTGCATTACC CAAAATCAAT chrXV:391576-391883 + 38 5.54e-06 AACTGATTAA CATACGTACACCCCG GCATAAAAGC chrVII:788312-788732 - 54 6.07e-06 TTCCTTACAA CATCCGTGCATACTC TAAACCCAAT chrXIV:495182-495616 - 43 6.66e-06 TGACATATTC AATCCGTACATTATA CACACCCAAA chrV:491074-491391 + 39 6.66e-06 GCAGGCTGAG CGCCCGCACACCCAC CTGCGGGAGT chrXV:1025709-1026070 + 38 7.30e-06 ATATGCTGAA CACCCATTCATCACG TGTAATTGGA chrXII:370567-371071 - 14 7.30e-06 GCACTTCGCC CACCCATGAACCACA CGGTTAGTCC chrXII:241611-242027 + 39 7.30e-06 TCCCTTTTTA CATCCGTACATATAA AATGTAAACC chrXII:732009-732291 - 58 7.99e-06 AAGGGATTCG AACCCTTGCATCCGA AGATATCAGA chrXII:592366-592717 + 46 7.99e-06 AAGGGATTCG AACCCTTGCATCCGA AGATATCAGA chrXV:216277-216733 + 5 8.73e-06 CGAG CACCCGCGCCTTCCT CAACCCAGGC chrXII:713136-713605 - 49 8.73e-06 CAGACTATCA CATCCGTACATATGT ATAAAAAAAT chrII:165068-165534 + 7 8.73e-06 GAATCT AGCCCATACACCGCG TTAGAGCACT chrXV:866513-867092 - 1 9.52e-06 ACCGGTGTAA CACCCATACAAACCC chrVII:700379-701160 - 5 1.04e-05 GCGGGGTTTG AACCCGCGCCTCCGA AGAG chrVIII:74836-75485 + 44 1.34e-05 TGCAAGTTCA CACCTGTACATTTTC TACATCCGTA chrVII:483331-483664 - 1 1.34e-05 CGCAGAAATA AACCCATACACGAGA chrXVI:731894-732322 + 47 1.46e-05 ATCGTCAGTA CACCCATACCTTTAG GATGGTTGGA chrXV:505102-505521 + 34 1.46e-05 ATTCATTTCA AACCCATACACAATG AACCTTATCA chrXI:356174-356510 - 54 1.58e-05 TCCTTTCTGA CATCCTCGCACTCGA AAACGTCATA chrX:391785-392144 + 81 1.71e-05 ACACGCCCCA CACCCAGACCTCCCT GCGAG chrXII:424114-424593 + 6 2.01e-05 CGCTA CACACGTACATTGCT GTGGTGCACG chrIV:599794-600117 + 48 2.01e-05 ACTATTCAAC GATCCATGCATCTGC CAGATTCGGA chrIX:99615-100056 - 40 2.18e-05 GCAATTAAAG CATCGGTACACCATG TAACACCAGT chrXIII:296750-298873 + 51 2.35e-05 GGGCCTAGAA AACCCGCGCAACTGA TCCATTGTAA chrXVI:280541-282916 + 73 2.53e-05 GCAATATTAA CATCCTTACCTCTTT ACACCCTTAC chrX:607630-608140 - 50 2.53e-05 AATGCACTAT CATCCTTACAATACC ATACCAGCCG chrXI:313222-313789 + 42 2.95e-05 TTTTTGGTTA CATCTGCACATCTGG TTGAATAAAT chrX:651214-651622 + 79 3.18e-05 AATTATTCTT AACCCATACATATTT GTCTCAA chrV:354795-355205 - 72 3.67e-05 CTCCTAACCC CATACATACACTGTA TGATGTCAAA chrXIV:241382-241826 + 10 3.96e-05 AACATCCAG CACCTAAACACCATC AATACACGTT chrXII:796370-797357 - 71 3.96e-05 TTACATCATC AATCCTCGCATTTCA GCTTCCATTA chrIV:321624-321966 + 55 4.56e-05 CATACCTTTA CCTCCGTACACCAAT CTTTATTTTT chrXIII:752987-754960 + 13 5.62e-05 AACCAAAAAG AACCTATACACTTCT TTTGCAATCG chrII:88959-90343 - 4 7.34e-05 TTCGGTCCTA CACACGAGCATCGCT GGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCRTACAYCHYA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639156-639432 2.9e-10 69_[-3]_16 chrX:690555-690865 9.2e-10 55_[+3]_30 chrXI:614162-614450 9.5e-09 47_[+3]_38 chrVII:371201-371546 1.2e-08 32_[+3]_53 chrV:69074-69338 2.4e-08 20_[-3]_65 chrXII:5580-5797 3.1e-08 28_[+3]_57 chrXI:666610-666783 3.1e-08 44_[-3]_41 chrX:545406-545730 3.1e-08 35_[-3]_50 chrI:81884-82345 4.6e-08 42_[-3]_43 chrXIII:650809-651110 5.6e-08 72_[+3]_13 chrIV:229444-229889 1.4e-07 38_[+3]_47 chrXII:932066-932511 1.7e-07 17_[-3]_68 chrXVI:866476-866690 2.2e-07 51_[-3]_34 chrXIII:145893-146289 2.2e-07 43_[+3]_42 chrXV:901394-901634 3.5e-07 72_[-3]_13 chrXIV:783726-784319 3.5e-07 61_[-3]_24 chrIV:538876-539281 3.5e-07 77_[+3]_8 chrIV:125326-125676 3.5e-07 23_[-3]_62 chrXII:1028181-1028588 4e-07 64_[+3]_21 chrX:160023-160278 4e-07 74_[+3]_11 chrXII:921685-921926 4.6e-07 81_[-3]_4 chrVIII:505814-506213 5.4e-07 34_[-3]_51 chrXIII:550994-552261 6.2e-07 42_[+3]_43 chrVIII:125877-126326 6.2e-07 51_[+3]_34 chrIV:358043-358419 7.9e-07 64_[-3]_21 chrXVI:378645-379010 1e-06 59_[-3]_26 chrXI:67750-68095 1e-06 41_[+3]_44 chrXV:79719-80167 1.1e-06 51_[-3]_34 chrII:44935-45387 1.3e-06 59_[+3]_26 chrXV:167969-168454 1.4e-06 46_[+3]_39 chrXII:922092-922661 1.4e-06 19_[+3]_66 chrXV:253827-254102 1.6e-06 60_[-3]_25 chrXV:968095-968477 1.8e-06 29_[-3]_56 chrXI:382199-382473 1.8e-06 19_[+3]_66 chrXVI:794455-794830 2e-06 45_[+3]_40 chrXII:903412-903688 2e-06 22_[+3]_63 chrVII:1000310-1000605 2.2e-06 51_[+3]_34 chrII:592879-593294 2.2e-06 45_[-3]_40 chrVII:592455-592702 2.8e-06 84_[+3]_1 chrII:415496-415945 2.8e-06 9_[-3]_76 chrX:90037-90450 3.1e-06 68_[+3]_17 chrVIII:296830-297242 4.1e-06 71_[+3]_14 chrIV:1355726-1356032 4.1e-06 30_[-3]_55 chrIV:1300878-1301348 4.1e-06 46_[+3]_39 chrXVI:699686-700678 4.6e-06 2_[+3]_83 chrVIII:133970-134634 4.6e-06 13_[-3]_72 chrXV:391576-391883 5.5e-06 37_[+3]_48 chrVII:788312-788732 6.1e-06 53_[-3]_32 chrXIV:495182-495616 6.7e-06 42_[-3]_43 chrV:491074-491391 6.7e-06 38_[+3]_47 chrXV:1025709-1026070 7.3e-06 37_[+3]_48 chrXII:370567-371071 7.3e-06 13_[-3]_72 chrXII:241611-242027 7.3e-06 38_[+3]_47 chrXII:732009-732291 8e-06 57_[-3]_28 chrXII:592366-592717 8e-06 45_[+3]_40 chrXV:216277-216733 8.7e-06 4_[+3]_81 chrXII:713136-713605 8.7e-06 48_[-3]_37 chrII:165068-165534 8.7e-06 6_[+3]_79 chrXV:866513-867092 9.5e-06 [-3]_85 chrVII:700379-701160 1e-05 4_[-3]_81 chrVIII:74836-75485 1.3e-05 43_[+3]_42 chrVII:483331-483664 1.3e-05 [-3]_85 chrXVI:731894-732322 1.5e-05 46_[+3]_39 chrXV:505102-505521 1.5e-05 33_[+3]_52 chrXI:356174-356510 1.6e-05 53_[-3]_32 chrX:391785-392144 1.7e-05 80_[+3]_5 chrXII:424114-424593 2e-05 5_[+3]_80 chrIV:599794-600117 2e-05 47_[+3]_38 chrIX:99615-100056 2.2e-05 39_[-3]_46 chrXIII:296750-298873 2.4e-05 50_[+3]_35 chrXVI:280541-282916 2.5e-05 72_[+3]_13 chrX:607630-608140 2.5e-05 49_[-3]_36 chrXI:313222-313789 3e-05 41_[+3]_44 chrX:651214-651622 3.2e-05 78_[+3]_7 chrV:354795-355205 3.7e-05 71_[-3]_14 chrXIV:241382-241826 4e-05 9_[+3]_76 chrXII:796370-797357 4e-05 70_[-3]_15 chrIV:321624-321966 4.6e-05 54_[+3]_31 chrXIII:752987-754960 5.6e-05 12_[+3]_73 chrII:88959-90343 7.3e-05 3_[-3]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCRTACAYCHYA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAYCCRTACAYCHYA width=15 seqs=80 chrXV:639156-639432 ( 70) CACCCGTACACCACA 1 chrX:690555-690865 ( 56) CACCCGTACACCACC 1 chrXI:614162-614450 ( 48) CACCCGCACACCACA 1 chrVII:371201-371546 ( 33) CACCCATGCACCTCA 1 chrV:69074-69338 ( 21) CACCCGTACCCCACA 1 chrXII:5580-5797 ( 29) CACCCACACACCACA 1 chrXI:666610-666783 ( 45) CACCCACACACCACA 1 chrX:545406-545730 ( 36) CACCCATGCACCGCA 1 chrI:81884-82345 ( 43) CATCCGTGCACCTCC 1 chrXIII:650809-651110 ( 73) CACCCGTACATTTCA 1 chrIV:229444-229889 ( 39) CATCCGTACATCAGA 1 chrXII:932066-932511 ( 18) CATCCGTACATCTGA 1 chrXVI:866476-866690 ( 52) CACCCATACACCAAA 1 chrXIII:145893-146289 ( 44) CATCCATACACCATA 1 chrXV:901394-901634 ( 73) CACCCGTACATTTTA 1 chrXIV:783726-784319 ( 62) CACCCACACACTACC 1 chrIV:538876-539281 ( 78) CACCCACACCCCTCA 1 chrIV:125326-125676 ( 24) AACCCATACACCGCA 1 chrXII:1028181-1028588 ( 65) CACCCATGCACCAAA 1 chrX:160023-160278 ( 75) CACCCATACCCCATA 1 chrXII:921685-921926 ( 82) CACCCGTGCCCCCGC 1 chrVIII:505814-506213 ( 35) CATCCATACATTTCA 1 chrXIII:550994-552261 ( 43) CACCCATACATTATA 1 chrVIII:125877-126326 ( 52) CATCCGTACACCTAC 1 chrIV:358043-358419 ( 65) CACCCATACATTATC 1 chrXVI:378645-379010 ( 60) CATCCGTACATTCGA 1 chrXI:67750-68095 ( 42) AATCCGTGCACCGCA 1 chrXV:79719-80167 ( 52) CACCCGTACATATTA 1 chrII:44935-45387 ( 60) CATCCGTACATTCTA 1 chrXV:167969-168454 ( 47) CGCCCACACATCACA 1 chrXII:922092-922661 ( 20) CACCCGTACATATTC 1 chrXV:253827-254102 ( 61) AATCCGTACACCGCG 1 chrXV:968095-968477 ( 30) CGCCCACGCACCCCA 1 chrXI:382199-382473 ( 20) CATCCGGACATCACA 1 chrXVI:794455-794830 ( 46) CATCCGAACATCTCC 1 chrXII:903412-903688 ( 23) GACCCATGCACCACA 1 chrVII:1000310-1000605 ( 52) CACCCAAACACCTGC 1 chrII:592879-593294 ( 46) CATCCATACATCTTT 1 chrVII:592455-592702 ( 85) CGCCCGTGCCTCTCC 1 chrII:415496-415945 ( 10) CACCCATGCATTTTG 1 chrX:90037-90450 ( 69) CACCCATACATGGCC 1 chrVIII:296830-297242 ( 72) CACCAGTACATCACA 1 chrIV:1355726-1356032 ( 31) CATCCATACATTCGG 1 chrIV:1300878-1301348 ( 47) CATCCGTGCACTGTG 1 chrXVI:699686-700678 ( 3) AATCCTTACATCACA 1 chrVIII:133970-134634 ( 14) CATCCTTGCATTACC 1 chrXV:391576-391883 ( 38) CATACGTACACCCCG 1 chrVII:788312-788732 ( 54) CATCCGTGCATACTC 1 chrXIV:495182-495616 ( 43) AATCCGTACATTATA 1 chrV:491074-491391 ( 39) CGCCCGCACACCCAC 1 chrXV:1025709-1026070 ( 38) CACCCATTCATCACG 1 chrXII:370567-371071 ( 14) CACCCATGAACCACA 1 chrXII:241611-242027 ( 39) CATCCGTACATATAA 1 chrXII:732009-732291 ( 58) AACCCTTGCATCCGA 1 chrXII:592366-592717 ( 46) AACCCTTGCATCCGA 1 chrXV:216277-216733 ( 5) CACCCGCGCCTTCCT 1 chrXII:713136-713605 ( 49) CATCCGTACATATGT 1 chrII:165068-165534 ( 7) AGCCCATACACCGCG 1 chrXV:866513-867092 ( 1) CACCCATACAAACCC 1 chrVII:700379-701160 ( 5) AACCCGCGCCTCCGA 1 chrVIII:74836-75485 ( 44) CACCTGTACATTTTC 1 chrVII:483331-483664 ( 1) AACCCATACACGAGA 1 chrXVI:731894-732322 ( 47) CACCCATACCTTTAG 1 chrXV:505102-505521 ( 34) AACCCATACACAATG 1 chrXI:356174-356510 ( 54) CATCCTCGCACTCGA 1 chrX:391785-392144 ( 81) CACCCAGACCTCCCT 1 chrXII:424114-424593 ( 6) CACACGTACATTGCT 1 chrIV:599794-600117 ( 48) GATCCATGCATCTGC 1 chrIX:99615-100056 ( 40) CATCGGTACACCATG 1 chrXIII:296750-298873 ( 51) AACCCGCGCAACTGA 1 chrXVI:280541-282916 ( 73) CATCCTTACCTCTTT 1 chrX:607630-608140 ( 50) CATCCTTACAATACC 1 chrXI:313222-313789 ( 42) CATCTGCACATCTGG 1 chrX:651214-651622 ( 79) AACCCATACATATTT 1 chrV:354795-355205 ( 72) CATACATACACTGTA 1 chrXIV:241382-241826 ( 10) CACCTAAACACCATC 1 chrXII:796370-797357 ( 71) AATCCTCGCATTTCA 1 chrIV:321624-321966 ( 55) CCTCCGTACACCAAT 1 chrXIII:752987-754960 ( 13) AACCTATACACTTCT 1 chrII:88959-90343 ( 4) CACACGAGCATCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCRTACAYCHYA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 43430 bayes= 10.0265 E= 9.1e-067 -72 205 -293 -1297 158 -392 -160 -1297 -1297 169 -1297 32 -263 232 -1297 -1297 -463 228 -392 -263 50 -1297 128 -163 -263 -12 -293 127 118 -1297 60 -463 -463 238 -1297 -1297 150 -60 -1297 -1297 -305 124 -1297 73 -163 166 -293 -17 23 -2 -60 7 -182 132 -2 -31 69 32 -47 -131 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCRTACAYCHYA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 80 E= 9.1e-067 0.187500 0.787500 0.025000 0.000000 0.925000 0.012500 0.062500 0.000000 0.000000 0.612500 0.000000 0.387500 0.050000 0.950000 0.000000 0.000000 0.012500 0.925000 0.012500 0.050000 0.437500 0.000000 0.462500 0.100000 0.050000 0.175000 0.025000 0.750000 0.700000 0.000000 0.287500 0.012500 0.012500 0.987500 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.037500 0.450000 0.000000 0.512500 0.100000 0.600000 0.025000 0.275000 0.362500 0.187500 0.125000 0.325000 0.087500 0.475000 0.187500 0.250000 0.500000 0.237500 0.137500 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCRTACAYCHYA MEME-3 regular expression -------------------------------------------------------------------------------- CA[CT]CC[GA]T[AG]CA[TC][CT][AT][CT][AC] -------------------------------------------------------------------------------- Time 685.26 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71773-73257 1.84e-01 100 chrI:81884-82345 4.92e-05 42_[-3(4.58e-08)]_43 chrI:138924-139349 6.61e-05 65_[-2(1.55e-08)]_6 chrI:166170-166876 9.99e-01 100 chrII:9463-10015 9.97e-01 100 chrII:36235-36790 9.12e-01 100 chrII:37082-37321 2.23e-02 100 chrII:44935-45387 2.80e-03 59_[+3(1.28e-06)]_26 chrII:60692-61263 3.69e-01 100 chrII:87955-88548 8.40e-01 100 chrII:88959-90343 6.36e-02 3_[-3(7.34e-05)]_82 chrII:135972-136291 1.76e-01 100 chrII:165068-165534 7.57e-03 6_[+3(8.73e-06)]_79 chrII:167884-169540 5.74e-01 100 chrII:181184-181689 7.29e-01 100 chrII:197224-197838 1.16e-15 12_[-2(9.51e-12)]_7_[-1(6.38e-12)]_\ 26 chrII:226975-227352 6.67e-01 100 chrII:255082-255683 3.57e-01 100 chrII:266212-266765 9.11e-01 100 chrII:301119-301624 2.75e-01 100 chrII:326507-327246 1.56e-05 10_[+2(9.95e-08)]_61 chrII:332298-333066 7.35e-01 100 chrII:347403-347927 4.55e-01 100 chrII:350595-351068 2.50e-05 45_[-2(3.76e-08)]_26 chrII:405663-406217 5.69e-11 21_[-1(1.50e-10)]_22_[-2(8.40e-08)]_\ 2 chrII:415496-415945 9.94e-03 9_[-3(2.78e-06)]_76 chrII:476843-477729 3.85e-01 100 chrII:592879-593294 5.82e-03 28_[-3(6.86e-05)]_2_[-3(2.25e-06)]_\ 40 chrII:604115-607109 9.35e-01 100 chrII:644963-645428 2.35e-08 55_[-1(3.96e-11)]_19 chrIII:117-1257 2.25e-01 100 chrIII:29592-31172 8.56e-03 100 chrIII:82465-82643 1.96e-01 100 chrIII:90787-91084 1.24e-01 100 chrIII:123484-123807 9.87e-05 24_[+2(4.50e-07)]_47 chrIII:127545-127897 1.03e-04 44_[-2(2.10e-08)]_27 chrIII:142250-143006 3.49e-01 100 chrIII:149715-150252 2.81e-04 20_[-1(4.21e-08)]_54 chrIII:151014-151606 2.15e-12 35_[+1(6.88e-11)]_6_[+2(1.02e-08)]_\ 4 chrIII:162522-163895 9.66e-01 100 chrIII:168099-168547 1.22e-11 39_[+1(1.47e-09)]_5_[+2(2.10e-08)]_\ 1 chrIII:177099-178707 8.67e-01 100 chrIII:227756-228218 2.25e-06 4_[-2(5.98e-10)]_67 chrIII:295352-295948 5.20e-01 100 chrIII:308599-308984 2.21e-04 72_[+1(1.42e-06)]_2 chrIV:45218-45794 5.89e-01 100 chrIV:83334-84023 9.77e-01 100 chrIV:117151-118206 3.57e-01 100 chrIV:125326-125676 4.42e-04 23_[-3(3.52e-07)]_62 chrIV:129204-131206 8.09e-01 100 chrIV:217074-218082 6.58e-01 100 chrIV:221421-222372 9.84e-01 100 chrIV:229444-229889 9.98e-04 14_[+3(1.34e-05)]_9_[+3(1.41e-07)]_\ 47 chrIV:308006-309393 7.32e-01 100 chrIV:321624-321966 1.04e-01 54_[+3(4.56e-05)]_31 chrIV:341044-341653 6.02e-01 100 chrIV:355113-356998 2.43e-01 100 chrIV:358043-358419 5.82e-03 64_[-3(7.91e-07)]_21 chrIV:359054-359786 8.74e-01 100 chrIV:410194-410457 9.35e-01 100 chrIV:411104-411664 9.30e-01 100 chrIV:434052-435113 3.20e-01 100 chrIV:437545-438105 3.53e-01 100 chrIV:465174-468073 3.49e-01 100 chrIV:488460-488992 7.74e-01 100 chrIV:489759-491266 8.54e-01 100 chrIV:519654-519915 9.79e-07 8_[-2(4.50e-10)]_63 chrIV:520707-521170 3.21e-01 100 chrIV:538876-539281 1.36e-04 77_[+3(3.52e-07)]_8 chrIV:568641-569332 5.35e-08 27_[-2(8.40e-08)]_5_[-1(2.45e-07)]_\ 13 chrIV:579019-580717 3.57e-01 100 chrIV:599794-600117 8.31e-03 47_[+3(2.01e-05)]_38 chrIV:601203-601523 3.80e-02 16_[+2(9.30e-05)]_55 chrIV:619706-620398 9.63e-04 10_[+2(1.75e-07)]_61 chrIV:667803-668583 3.16e-01 100 chrIV:757474-758386 6.81e-01 100 chrIV:802583-802837 3.85e-01 100 chrIV:835873-837976 8.12e-02 100 chrIV:884288-884576 1.34e-04 73_[-1(1.99e-08)]_1 chrIV:945391-946639 7.02e-01 100 chrIV:976183-976449 2.17e-02 100 chrIV:992682-993284 5.93e-01 100 chrIV:1013410-1014018 9.98e-01 100 chrIV:1016986-1017510 1.23e-08 20_[+1(3.96e-11)]_54 chrIV:1075329-1075748 3.13e-02 27_[+2(3.93e-05)]_44 chrIV:1095160-1095685 8.12e-12 9_[+1(1.50e-10)]_25_[+2(1.26e-08)]_\ 11 chrIV:1150688-1151173 9.16e-07 32_[+2(5.19e-10)]_39 chrIV:1161624-1162033 3.76e-01 100 chrIV:1162907-1164615 1.63e-01 100 chrIV:1175584-1176094 2.89e-11 39_[-2(1.13e-08)]_6_[-1(4.30e-09)] chrIV:1201051-1202115 7.95e-01 100 chrIV:1300878-1301348 1.08e-02 46_[+3(4.14e-06)]_39 chrIV:1305156-1305908 6.62e-01 100 chrIV:1352071-1353091 9.31e-01 100 chrIV:1355726-1356032 8.84e-03 6_[-3(7.30e-06)]_9_[-3(4.14e-06)]_\ 55 chrIV:1359195-1360822 6.03e-01 100 chrIV:1401215-1401930 8.31e-01 100 chrIV:1449801-1451665 5.60e-01 100 chrIV:1461382-1461847 7.65e-01 100 chrIX:68166-69544 9.81e-01 100 chrIX:99615-100056 3.27e-02 39_[-3(2.18e-05)]_46 chrIX:138228-139163 2.59e-01 100 chrIX:174696-175465 1.51e-12 [-2(9.04e-10)]_6_[-1(6.97e-10)]_39 chrIX:177676-178208 7.85e-01 100 chrIX:182892-183689 7.09e-01 100 chrIX:197320-198048 8.24e-01 100 chrIX:210663-211024 4.48e-01 100 chrIX:248578-249372 7.48e-01 100 chrIX:253916-254579 1.19e-01 100 chrIX:255159-255854 4.74e-01 100 chrIX:257357-257851 6.76e-01 100 chrIX:299979-300653 4.44e-05 5_[+2(1.02e-08)]_66 chrIX:315913-318518 5.52e-02 100 chrIX:323734-324544 7.12e-01 100 chrIX:325514-326132 2.04e-06 9_[-1(6.97e-10)]_65 chrIX:335984-336636 6.68e-01 100 chrIX:370249-370581 8.74e-02 100 chrIX:386542-386933 9.61e-01 100 chrIX:389300-390953 9.35e-02 100 chrIX:427320-427789 6.90e-01 100 chrV:6185-6732 1.15e-03 63_[+1(1.30e-05)]_11 chrV:23324-24056 3.24e-01 100 chrV:53498-54418 5.64e-02 100 chrV:61097-62133 8.90e-01 100 chrV:67652-68810 3.69e-01 100 chrV:69074-69338 3.46e-06 20_[-3(2.41e-08)]_65 chrV:77607-79468 1.38e-01 100 chrV:85107-86971 4.18e-01 100 chrV:99875-100283 9.83e-01 100 chrV:117212-118301 7.78e-01 100 chrV:130864-131362 4.34e-11 30_[+1(3.57e-09)]_5_[+2(3.76e-08)]_\ 10 chrV:135163-136175 6.04e-01 100 chrV:138479-140000 3.90e-01 100 chrV:140184-141356 8.97e-01 100 chrV:176882-177437 5.84e-07 23_[-1(3.96e-11)]_51 chrV:249784-250881 1.22e-11 3_[-2(2.10e-08)]_5_[-1(1.47e-09)]_\ 37 chrV:270138-270690 2.64e-03 43_[-2(9.11e-07)]_28 chrV:288203-288760 1.53e-06 64_[+2(3.90e-10)]_7 chrV:305810-306921 3.60e-01 100 chrV:311741-312279 5.97e-07 74_[+1(6.88e-11)] chrV:354795-355205 9.51e-09 17_[-1(3.96e-11)]_28_[-3(3.67e-05)]_\ 14 chrV:362107-362497 6.29e-02 100 chrV:396169-397883 7.07e-01 100 chrV:423081-424335 8.10e-01 100 chrV:431022-432036 7.92e-01 100 chrV:434408-435137 2.15e-01 100 chrV:435323-435948 2.61e-01 100 chrV:438353-438950 4.98e-01 100 chrV:441800-442683 4.89e-01 100 chrV:442980-443341 5.66e-01 100 chrV:469239-469689 7.62e-06 42_[-2(6.88e-10)]_29 chrV:486857-487637 1.18e-01 100 chrV:491074-491391 3.99e-04 38_[+3(6.66e-06)]_47 chrV:551040-551580 1.16e-15 36_[+1(6.38e-12)]_7_[+2(9.51e-12)]_\ 2 chrVI:4525-4759 9.57e-01 100 chrVI:31170-31468 3.38e-01 100 chrVI:64149-65377 3.81e-01 100 chrVI:82430-84636 3.68e-01 100 chrVI:95471-95907 1.47e-01 100 chrVI:101372-101923 8.75e-01 100 chrVI:136663-137821 6.83e-01 100 chrVI:155862-156284 3.91e-01 100 chrVI:157899-158436 8.90e-01 100 chrVI:162027-162397 2.10e-04 65_[-2(3.76e-08)]_6 chrVI:167273-167687 8.72e-11 6_[-2(2.56e-08)]_22_[-1(4.98e-10)]_\ 17 chrVI:180690-181257 1.50e-06 62_[+1(1.33e-10)]_12 chrVI:191216-191754 8.03e-01 100 chrVI:210433-210907 8.72e-11 10_[+1(4.98e-10)]_22_[+2(2.56e-08)]_\ 13 chrVI:221396-222359 6.82e-01 100 chrVI:223268-224155 2.36e-02 100 chrVI:226421-226983 1.75e-07 47_[+1(6.88e-11)]_27 chrVII:110108-110788 4.42e-01 100 chrVII:115276-115719 2.18e-06 40_[-2(2.90e-10)]_31 chrVII:122000-122519 4.44e-05 59_[-2(1.02e-08)]_12 chrVII:148085-149516 2.11e-01 100 chrVII:185400-185926 6.50e-01 100 chrVII:205114-206114 1.24e-01 100 chrVII:254133-254693 8.39e-01 100 chrVII:277016-278676 5.73e-01 100 chrVII:286723-287778 7.46e-02 100 chrVII:291718-292006 8.48e-01 100 chrVII:310391-312389 6.42e-01 100 chrVII:319223-320103 3.10e-01 100 chrVII:323589-324107 9.44e-01 100 chrVII:328385-328996 2.47e-01 100 chrVII:364922-366665 9.34e-01 100 chrVII:371201-371546 7.26e-05 32_[+3(1.22e-08)]_53 chrVII:405466-405827 9.99e-01 100 chrVII:411917-412593 4.13e-01 100 chrVII:422786-423353 4.80e-01 100 chrVII:438548-439847 5.92e-01 100 chrVII:440555-440990 1.64e-12 5_[+1(2.22e-11)]_25_[+2(1.55e-08)]_\ 15 chrVII:483331-483664 2.16e-05 [-3(1.34e-05)]_14_[-1(1.10e-06)]_45 chrVII:531400-531796 1.61e-04 61_[-2(8.40e-08)]_10 chrVII:533963-535191 6.33e-01 100 chrVII:541713-542170 5.35e-01 100 chrVII:544400-544907 3.07e-04 16_[+2(8.40e-08)]_55 chrVII:555166-557533 9.29e-01 100 chrVII:592455-592702 3.08e-04 84_[+3(2.78e-06)]_1 chrVII:648801-649342 7.49e-01 100 chrVII:661501-661937 2.72e-01 100 chrVII:700379-701160 1.51e-02 4_[-3(1.04e-05)]_81 chrVII:702797-705098 8.26e-01 100 chrVII:706937-707192 8.96e-01 100 chrVII:726204-728086 9.72e-01 100 chrVII:730971-731426 1.40e-05 24_[-1(1.04e-08)]_50 chrVII:736196-736672 5.40e-01 100 chrVII:738843-739449 4.51e-16 25_[-2(9.51e-12)]_7_[-1(6.38e-12)]_\ 13 chrVII:766151-766398 5.11e-01 100 chrVII:774131-774690 1.12e-05 23_[-1(1.33e-09)]_51 chrVII:779321-779751 6.00e-01 100 chrVII:788312-788732 1.50e-02 53_[-3(6.07e-06)]_32 chrVII:794054-794515 9.61e-01 100 chrVII:823350-823708 1.39e-11 2_[-2(6.88e-10)]_7_[-1(2.43e-09)]_\ 36 chrVII:828370-828991 9.01e-01 100 chrVII:845252-846318 8.57e-01 100 chrVII:856533-857664 4.10e-01 100 chrVII:876156-876537 8.87e-01 100 chrVII:878570-879130 4.33e-01 100 chrVII:882787-883864 1.17e-01 100 chrVII:930742-931150 1.10e-06 68_[+1(1.33e-10)]_6 chrVII:986828-987152 6.53e-01 100 chrVII:987420-987643 3.74e-01 100 chrVII:1000310-1000605 5.15e-03 51_[+3(2.25e-06)]_34 chrVII:1003967-1004414 4.84e-01 100 chrVIII:62223-62917 7.41e-01 100 chrVIII:74836-75485 3.84e-02 43_[+3(1.34e-05)]_42 chrVIII:103679-104296 7.40e-02 100 chrVIII:115815-116298 2.00e-01 100 chrVIII:125877-126326 4.51e-03 51_[+3(6.15e-07)]_34 chrVIII:132789-133343 1.44e-05 62_[+2(6.53e-09)]_9 chrVIII:133970-134634 5.92e-08 13_[-3(4.57e-06)]_40_[-2(2.10e-08)]_\ 3 chrVIII:145909-146770 2.94e-01 100 chrVIII:148985-149494 6.63e-01 100 chrVIII:175006-176065 8.65e-01 100 chrVIII:237746-238088 1.42e-04 43_[+2(1.55e-08)]_28 chrVIII:296830-297242 8.95e-03 45_[-3(6.01e-05)]_11_[+3(4.14e-06)]_\ 14 chrVIII:358165-358802 9.78e-08 56_[+1(2.22e-11)]_18 chrVIII:381468-383360 6.05e-01 100 chrVIII:388671-389217 6.96e-06 10_[+1(1.07e-09)]_64 chrVIII:466973-467149 1.39e-05 12_[-1(3.92e-08)]_62 chrVIII:475518-475909 1.17e-05 54_[+1(1.80e-09)]_20 chrVIII:505814-506213 7.82e-04 34_[-3(5.37e-07)]_51 chrX:58996-59472 5.67e-01 100 chrX:73368-75752 8.08e-02 100 chrX:75929-76497 5.76e-02 100 chrX:90037-90450 8.81e-03 68_[+3(3.07e-06)]_17 chrX:115786-116237 8.74e-02 100 chrX:157430-157956 8.63e-01 100 chrX:160023-160278 2.58e-03 74_[+3(4.04e-07)]_11 chrX:196713-197522 2.84e-01 100 chrX:204491-205029 5.35e-08 24_[-2(8.40e-08)]_5_[-1(2.45e-07)]_\ 16 chrX:227782-228636 6.67e-01 100 chrX:233727-234121 7.18e-04 64_[-2(1.75e-07)]_7 chrX:354165-354554 7.03e-01 100 chrX:355204-355730 5.35e-08 38_[-2(8.40e-08)]_5_[-1(2.45e-07)]_\ 2 chrX:374180-374892 2.31e-07 31_[+1(1.50e-10)]_43 chrX:378145-378580 2.59e-06 47_[-2(6.88e-10)]_24 chrX:390933-391338 5.31e-05 1_[+2(1.13e-08)]_70 chrX:391785-392144 3.20e-02 80_[+3(1.71e-05)]_5 chrX:396460-397027 1.38e-06 44_[+1(1.33e-10)]_30 chrX:414774-415325 2.77e-07 1_[-1(6.88e-11)]_73 chrX:415719-416331 1.83e-02 40_[-1(3.13e-05)]_34 chrX:422681-423239 3.20e-10 26_[-2(1.13e-08)]_6_[-1(4.30e-09)]_\ 13 chrX:424295-424717 1.17e-06 30_[+2(4.50e-10)]_41 chrX:517663-518203 5.15e-01 100 chrX:523913-524419 3.31e-01 100 chrX:531478-532215 4.79e-11 31_[-2(3.76e-08)]_4_[-1(1.33e-10)]_\ 10 chrX:538523-538771 5.84e-01 100 chrX:540718-541988 9.77e-01 100 chrX:542751-543259 8.72e-11 12_[+1(4.98e-10)]_22_[+2(2.56e-08)]_\ 11 chrX:545406-545730 5.45e-05 35_[-3(3.12e-08)]_50 chrX:606252-606747 8.90e-01 100 chrX:607630-608140 4.70e-02 49_[-3(2.53e-05)]_36 chrX:617692-618136 2.50e-06 54_[-2(3.90e-10)]_17 chrX:651214-651622 4.32e-03 78_[+3(3.18e-05)]_7 chrX:690555-690865 3.11e-06 55_[+3(9.24e-10)]_30 chrX:703232-703801 6.78e-01 100 chrX:745097-745747 7.92e-03 67_[-2(2.23e-06)]_4 chrXI:768-1101 5.42e-01 100 chrXI:46717-47004 4.73e-01 100 chrXI:67750-68095 1.08e-03 41_[+3(1.01e-06)]_44 chrXI:74440-74807 7.20e-05 50_[-2(2.10e-08)]_21 chrXI:84016-84435 1.92e-07 32_[-2(4.50e-10)]_39 chrXI:99723-100001 3.50e-01 100 chrXI:108595-110135 8.03e-01 100 chrXI:140786-141336 2.35e-08 18_[+1(3.96e-11)]_56 chrXI:141688-142579 2.71e-01 100 chrXI:158207-159328 6.62e-01 100 chrXI:162434-162731 7.65e-01 100 chrXI:219633-220111 6.81e-01 100 chrXI:302704-303243 3.54e-05 62_[-1(1.99e-08)]_12 chrXI:308015-308434 6.61e-06 14_[+2(6.88e-10)]_57 chrXI:313222-313789 4.54e-02 41_[+3(2.95e-05)]_44 chrXI:356174-356510 1.54e-02 53_[-3(1.58e-05)]_32 chrXI:379483-379917 6.17e-12 29_[-2(6.88e-10)]_7_[-1(2.43e-09)]_\ 9 chrXI:382199-382473 1.36e-04 19_[+3(1.80e-06)]_41_[+3(6.86e-05)]_\ 10 chrXI:430821-431652 3.31e-01 100 chrXI:457400-458980 6.31e-01 100 chrXI:490723-491361 1.07e-03 10_[-1(1.37e-07)]_64 chrXI:513193-513517 5.35e-08 38_[+1(2.45e-07)]_5_[+2(8.40e-08)]_\ 2 chrXI:517798-518071 8.52e-01 100 chrXI:518848-521702 1.72e-01 100 chrXI:578730-579317 6.93e-06 49_[-1(3.57e-09)]_25 chrXI:614162-614450 1.44e-05 47_[+3(9.46e-09)]_3_[-3(5.62e-05)]_\ 20 chrXI:614882-615188 6.17e-02 100 chrXI:618003-619382 9.67e-01 100 chrXI:645432-645883 9.66e-01 100 chrXI:666610-666783 2.55e-05 1_[-3(8.73e-06)]_28_[-3(3.12e-08)]_\ [-3(3.12e-08)]_10_[-3(1.14e-06)]_1 chrXII:56-210 6.85e-01 100 chrXII:5580-5797 4.82e-05 28_[+3(3.12e-08)]_15_[+3(1.14e-06)]_\ 2_[+3(1.80e-06)]_10 chrXII:48698-49218 1.00e+00 100 chrXII:92415-92716 5.71e-05 32_[-2(1.55e-08)]_39 chrXII:167554-168264 9.90e-01 100 chrXII:198347-199695 7.62e-01 100 chrXII:214705-215067 6.24e-07 58_[+1(6.88e-11)]_16 chrXII:232012-234174 6.84e-01 100 chrXII:241611-242027 3.40e-02 38_[+3(7.30e-06)]_6_[+3(4.56e-05)]_\ 26 chrXII:262833-263934 3.22e-01 100 chrXII:366039-366496 4.40e-02 66_[+1(2.41e-05)]_8 chrXII:369041-370261 9.16e-01 100 chrXII:370567-371071 3.39e-03 13_[-3(7.30e-06)]_72 chrXII:374212-374727 9.27e-01 100 chrXII:424114-424593 3.58e-02 5_[+3(2.01e-05)]_80 chrXII:426889-427444 5.35e-08 15_[-2(8.40e-08)]_5_[-1(2.45e-07)]_\ 25 chrXII:448498-448958 5.09e-05 14_[+2(2.10e-08)]_57 chrXII:459595-460729 4.38e-01 100 chrXII:498368-499792 9.24e-01 100 chrXII:521667-522448 9.54e-01 100 chrXII:592366-592717 1.16e-03 45_[+3(7.99e-06)]_40 chrXII:605174-605616 3.29e-06 58_[+2(6.88e-10)]_13 chrXII:628100-628633 3.03e-05 66_[-2(2.54e-09)]_5 chrXII:636713-639926 1.95e-01 100 chrXII:656844-657193 1.17e-07 9_[+2(9.51e-12)]_62 chrXII:673544-674306 3.27e-01 100 chrXII:687646-687844 9.60e-01 100 chrXII:710562-711277 5.82e-01 100 chrXII:713136-713605 3.57e-02 48_[-3(8.73e-06)]_37 chrXII:732009-732291 1.16e-03 57_[-3(7.99e-06)]_28 chrXII:734576-734973 8.95e-01 100 chrXII:780835-781889 3.18e-01 100 chrXII:783924-784522 3.43e-01 100 chrXII:793732-795371 4.25e-01 100 chrXII:796370-797357 2.18e-02 70_[-3(3.96e-05)]_15 chrXII:818503-820286 1.51e-01 100 chrXII:837673-839406 5.46e-01 100 chrXII:875180-875668 1.49e-12 1_[-2(2.90e-10)]_29_[-1(3.57e-09)]_\ 15 chrXII:897665-898932 2.29e-01 100 chrXII:903412-903688 3.61e-03 22_[+3(2.00e-06)]_63 chrXII:921685-921926 4.84e-04 81_[-3(4.65e-07)]_4 chrXII:922092-922661 3.57e-03 19_[+3(1.44e-06)]_66 chrXII:932066-932511 9.70e-05 17_[-3(1.67e-07)]_1_[-3(1.14e-06)]_\ 10_[-3(6.07e-06)]_27 chrXII:962589-963302 4.46e-01 100 chrXII:975802-976102 9.95e-01 100 chrXII:1017687-1019643 6.49e-01 100 chrXII:1019885-1020041 8.01e-01 100 chrXII:1028181-1028588 1.77e-03 64_[+3(4.04e-07)]_21 chrXII:1051919-1052221 1.65e-08 62_[+1(6.38e-12)]_12 chrXIII:91495-92087 4.68e-02 100 chrXIII:131557-132112 2.37e-06 52_[+1(1.50e-10)]_22 chrXIII:145893-146289 1.50e-04 43_[+3(2.23e-07)]_15_[+3(2.18e-05)]_\ 12 chrXIII:161901-164331 3.94e-01 100 chrXIII:168681-169007 8.72e-11 [-2(2.56e-08)]_22_[-1(4.98e-10)]_23 chrXIII:195942-196301 5.62e-11 8_[+1(1.07e-09)]_36_[+2(1.55e-08)]_\ 1 chrXIII:224058-224726 8.84e-02 100 chrXIII:225112-225749 4.70e-01 100 chrXIII:259024-259484 3.11e-05 6_[+2(6.53e-09)]_65 chrXIII:290557-291250 5.70e-01 100 chrXIII:296750-298873 2.79e-02 50_[+3(2.35e-05)]_35 chrXIII:302825-303499 3.94e-01 100 chrXIII:306181-307132 1.39e-01 100 chrXIII:320965-321433 9.69e-14 9_[+1(1.33e-09)]_6_[+2(9.51e-12)]_\ 30 chrXIII:352090-352609 7.22e-08 33_[-1(2.22e-11)]_41 chrXIII:362945-363383 7.56e-01 100 chrXIII:372169-372778 1.39e-11 33_[+1(2.43e-09)]_7_[+2(6.88e-10)]_\ 5 chrXIII:378875-379638 7.40e-01 100 chrXIII:420327-420868 3.79e-06 52_[+1(2.43e-09)]_22 chrXIII:433539-433759 2.42e-01 100 chrXIII:463431-463854 8.27e-02 100 chrXIII:480405-480900 2.15e-12 30_[+1(6.88e-11)]_6_[+2(1.02e-08)]_\ 9 chrXIII:504658-505242 1.24e-01 100 chrXIII:540443-540786 2.08e-01 100 chrXIII:550994-552261 1.72e-03 42_[+3(6.15e-07)]_43 chrXIII:572617-573637 1.56e-01 100 chrXIII:586315-586895 3.44e-01 100 chrXIII:650809-651110 3.84e-04 72_[+3(5.55e-08)]_13 chrXIII:731875-733552 6.89e-01 100 chrXIII:747673-748152 2.59e-06 41_[+1(1.50e-10)]_33 chrXIII:752987-754960 9.06e-02 12_[+3(5.62e-05)]_73 chrXIII:760458-762494 6.95e-01 100 chrXIII:768167-768445 9.88e-01 100 chrXIII:808050-808522 1.35e-10 21_[+1(2.15e-08)]_5_[+2(2.10e-08)]_\ 19 chrXIII:837735-838188 8.72e-11 16_[-2(2.56e-08)]_22_[-1(4.98e-10)]_\ 7 chrXIII:861208-861545 7.52e-01 100 chrXIII:872432-872929 7.62e-01 100 chrXIV:61955-64537 9.25e-01 100 chrXIV:96001-96462 5.99e-06 71_[+1(1.99e-09)]_3 chrXIV:102584-103049 3.55e-02 100 chrXIV:104600-105145 2.50e-06 17_[-1(6.97e-10)]_57 chrXIV:105462-105646 2.94e-01 100 chrXIV:241382-241826 3.21e-02 9_[+3(3.96e-05)]_76 chrXIV:301516-302008 5.26e-01 100 chrXIV:330405-331164 8.11e-01 100 chrXIV:351438-353223 1.68e-01 100 chrXIV:374716-375086 3.02e-13 17_[-2(1.26e-08)]_24_[-1(4.57e-12)]_\ 4 chrXIV:442869-443229 1.57e-05 6_[-2(2.54e-09)]_65 chrXIV:443412-443991 1.39e-01 100 chrXIV:444171-444815 2.68e-01 100 chrXIV:495182-495616 1.48e-02 25_[-3(3.42e-05)]_2_[-3(6.66e-06)]_\ 43 chrXIV:499182-500737 3.77e-01 100 chrXIV:518773-519132 2.42e-01 100 chrXIV:546556-547358 9.91e-01 100 chrXIV:560190-560789 6.44e-01 100 chrXIV:568052-568535 9.98e-01 100 chrXIV:569638-570048 2.78e-01 100 chrXIV:602072-602562 2.98e-08 44_[-2(9.51e-12)]_27 chrXIV:631507-632015 8.34e-01 100 chrXIV:632496-632892 2.14e-01 100 chrXIV:725711-726360 8.55e-01 100 chrXIV:771934-772400 7.16e-01 100 chrXIV:783726-784319 1.16e-03 61_[-3(3.52e-07)]_[-3(1.14e-06)]_9 chrXV:79719-80167 4.05e-03 29_[-3(3.42e-05)]_7_[-3(1.14e-06)]_\ 34 chrXV:92739-94799 3.28e-01 100 chrXV:109515-110665 4.16e-01 100 chrXV:110839-111406 1.00e-01 100 chrXV:113448-113879 7.76e-01 100 chrXV:159215-160144 4.05e-01 100 chrXV:161107-161906 4.86e-01 100 chrXV:167969-168454 7.23e-03 23_[-3(3.96e-05)]_8_[+3(1.44e-06)]_\ 39 chrXV:216277-216733 4.50e-03 4_[+3(8.73e-06)]_1_[+3(1.34e-05)]_\ 65 chrXV:226471-226877 9.12e-05 28_[+2(3.76e-08)]_43 chrXV:228013-228524 9.93e-01 100 chrXV:231980-232290 8.68e-02 100 chrXV:253827-254102 5.56e-04 33_[+3(4.89e-05)]_12_[-3(1.61e-06)]_\ 25 chrXV:274467-274977 1.22e-06 [-2(5.19e-10)]_71 chrXV:281745-282937 8.17e-01 100 chrXV:288066-288401 8.72e-11 8_[-2(2.56e-08)]_22_[-1(4.98e-10)]_\ 15 chrXV:300802-301774 2.43e-01 100 chrXV:340159-340679 9.94e-01 100 chrXV:353902-354315 1.26e-05 26_[+2(9.04e-10)]_45 chrXV:391576-391883 1.26e-02 37_[+3(5.54e-06)]_48 chrXV:424166-424602 8.87e-01 100 chrXV:438416-439438 1.73e-01 100 chrXV:444625-446311 1.78e-01 100 chrXV:464283-464737 1.92e-06 53_[-1(1.07e-09)]_21 chrXV:487440-487719 9.33e-01 100 chrXV:505102-505521 2.90e-02 33_[+3(1.46e-05)]_10_[+3(1.86e-05)]_\ 27 chrXV:571437-572155 8.83e-01 100 chrXV:594311-594630 5.99e-01 100 chrXV:639156-639432 6.79e-07 69_[-3(2.86e-10)]_16 chrXV:663527-664790 1.23e-01 100 chrXV:671068-671475 3.76e-01 100 chrXV:678238-679171 9.90e-01 100 chrXV:710068-710456 2.81e-04 22_[-1(4.21e-08)]_52 chrXV:779670-781002 4.86e-01 100 chrXV:796981-798761 1.79e-01 100 chrXV:854025-854821 2.19e-01 100 chrXV:866513-867092 3.42e-03 [-3(9.52e-06)]_85 chrXV:881793-882392 8.11e-01 100 chrXV:901394-901634 1.39e-03 72_[-3(3.52e-07)]_13 chrXV:904269-905188 9.97e-01 100 chrXV:908710-909116 3.31e-01 100 chrXV:925169-925428 2.28e-01 100 chrXV:968095-968477 2.16e-03 29_[-3(1.80e-06)]_56 chrXV:976377-976700 6.03e-01 100 chrXV:978780-979212 3.17e-01 100 chrXV:979719-981442 4.38e-01 100 chrXV:988576-989551 8.29e-01 100 chrXV:1003925-1004974 9.35e-01 100 chrXV:1025709-1026070 1.55e-02 37_[+3(7.30e-06)]_48 chrXV:1027765-1029117 1.85e-01 100 chrXVI:55835-56349 2.54e-01 100 chrXVI:75133-76868 3.65e-01 100 chrXVI:135528-135830 8.84e-01 100 chrXVI:188362-189094 1.33e-01 100 chrXVI:209980-210465 2.35e-08 31_[+1(3.96e-11)]_43 chrXVI:279676-280239 2.39e-01 100 chrXVI:280541-282916 4.81e-02 72_[+3(2.53e-05)]_13 chrXVI:302618-304454 2.04e-01 100 chrXVI:338772-339280 9.93e-01 100 chrXVI:339964-340799 2.40e-01 100 chrXVI:378645-379010 2.71e-04 34_[-3(1.61e-06)]_10_[-3(1.01e-06)]_\ 26 chrXVI:406179-407977 1.73e-01 100 chrXVI:435121-436202 2.13e-01 100 chrXVI:519965-520562 2.77e-01 100 chrXVI:559967-560458 9.78e-08 47_[+1(2.22e-11)]_27 chrXVI:571766-572509 7.26e-01 100 chrXVI:575197-575620 9.82e-01 100 chrXVI:581833-582400 1.75e-07 30_[-1(6.88e-11)]_44 chrXVI:622255-622847 5.84e-08 50_[+1(2.22e-11)]_24 chrXVI:688993-689869 7.13e-01 100 chrXVI:699686-700678 1.19e-03 2_[+3(4.57e-06)]_20_[+3(1.23e-05)]_\ 48 chrXVI:718460-719383 2.12e-01 100 chrXVI:731894-732322 1.89e-02 46_[+3(1.46e-05)]_39 chrXVI:732575-732740 9.53e-01 100 chrXVI:744072-744641 1.42e-06 11_[-1(5.19e-08)]_63 chrXVI:769010-769470 6.93e-06 28_[+1(3.57e-09)]_46 chrXVI:775647-776066 4.04e-01 100 chrXVI:794455-794830 1.09e-02 45_[+3(2.00e-06)]_3_[+3(7.30e-06)]_\ 22 chrXVI:810581-811364 1.78e-01 100 chrXVI:819330-820219 3.97e-01 100 chrXVI:856815-857108 1.02e-05 25_[-1(1.33e-09)]_49 chrXVI:860151-860679 8.83e-12 13_[-2(3.76e-08)]_4_[-1(1.33e-10)]_\ 28 chrXVI:866476-866690 8.89e-04 51_[-3(2.23e-07)]_34 chrXVI:880062-880543 1.65e-08 55_[+1(6.38e-12)]_19 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************