******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--AFT2/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:81895-82321 1.0000 100 chrI:138930-139351 1.0000 100 chrI:166171-166647 1.0000 100 chrII:9455-9904 1.0000 100 chrII:36230-36587 1.0000 100 chrII:44970-45371 1.0000 100 chrII:60773-61251 1.0000 100 chrII:89635-90340 1.0000 100 chrII:165104-165404 1.0000 100 chrII:167869-168615 1.0000 100 chrII:181295-181688 1.0000 100 chrII:197177-197842 1.0000 100 chrII:226971-227345 1.0000 100 chrII:255098-255720 1.0000 100 chrII:266189-266733 1.0000 100 chrII:326475-327172 1.0000 100 chrII:332257-332772 1.0000 100 chrII:347383-347945 1.0000 100 chrII:350593-351044 1.0000 100 chrII:405673-406221 1.0000 100 chrII:415485-416115 1.0000 100 chrII:477029-477755 1.0000 100 chrII:592869-593281 1.0000 100 chrII:604045-607111 1.0000 100 chrII:644949-645398 1.0000 100 chrIII:88-1238 1.0000 100 chrIII:11084-11558 1.0000 100 chrIII:58681-59093 1.0000 100 chrIII:82461-82650 1.0000 100 chrIII:90778-91100 1.0000 100 chrIII:123398-123791 1.0000 100 chrIII:127505-127881 1.0000 100 chrIII:137779-138992 1.0000 100 chrIII:142354-143000 1.0000 100 chrIII:149719-150172 1.0000 100 chrIII:150983-151568 1.0000 100 chrIII:163437-163891 1.0000 100 chrIII:168108-168557 1.0000 100 chrIII:178132-178696 1.0000 100 chrIII:227734-228231 1.0000 100 chrIII:295333-295952 1.0000 100 chrIII:308615-308984 1.0000 100 chrIII:316235-316591 1.0000 100 chrIV:45219-46124 1.0000 100 chrIV:83325-84170 1.0000 100 chrIV:117151-118091 1.0000 100 chrIV:130082-130998 1.0000 100 chrIV:217064-217784 1.0000 100 chrIV:221641-222528 1.0000 100 chrIV:229165-230435 1.0000 100 chrIV:307993-308693 1.0000 100 chrIV:321631-321970 1.0000 100 chrIV:340958-341688 1.0000 100 chrIV:358000-358494 1.0000 100 chrIV:359362-359886 1.0000 100 chrIV:410029-410460 1.0000 100 chrIV:410630-410799 1.0000 100 chrIV:411231-411679 1.0000 100 chrIV:434107-435090 1.0000 100 chrIV:437540-438232 1.0000 100 chrIV:488466-488993 1.0000 100 chrIV:490601-491262 1.0000 100 chrIV:519652-519908 1.0000 100 chrIV:520698-521439 1.0000 100 chrIV:538902-539466 1.0000 100 chrIV:568707-569230 1.0000 100 chrIV:578689-580415 1.0000 100 chrIV:601365-601738 1.0000 100 chrIV:619679-620307 1.0000 100 chrIV:667687-668602 1.0000 100 chrIV:802588-802842 1.0000 100 chrIV:835839-837383 1.0000 100 chrIV:884249-884575 1.0000 100 chrIV:945781-946637 1.0000 100 chrIV:992691-993225 1.0000 100 chrIV:1013437-1014000 1.0000 100 chrIV:1016940-1017508 1.0000 100 chrIV:1062808-1063109 1.0000 100 chrIV:1075086-1075768 1.0000 100 chrIV:1095128-1095715 1.0000 100 chrIV:1150683-1151173 1.0000 100 chrIV:1175601-1176579 1.0000 100 chrIV:1201515-1202008 1.0000 100 chrIV:1300872-1301361 1.0000 100 chrIV:1305413-1305867 1.0000 100 chrIV:1351907-1353082 1.0000 100 chrIV:1355716-1356044 1.0000 100 chrIV:1359421-1360832 1.0000 100 chrIV:1400976-1401903 1.0000 100 chrIV:1450782-1451668 1.0000 100 chrIV:1461344-1461848 1.0000 100 chrIX:67622-68949 1.0000 100 chrIX:99627-100067 1.0000 100 chrIX:174863-175535 1.0000 100 chrIX:183297-183709 1.0000 100 chrIX:197322-198160 1.0000 100 chrIX:210667-210991 1.0000 100 chrIX:211180-211692 1.0000 100 chrIX:248562-249017 1.0000 100 chrIX:254186-254568 1.0000 100 chrIX:257362-258147 1.0000 100 chrIX:300003-300522 1.0000 100 chrIX:315385-317635 1.0000 100 chrIX:324144-324601 1.0000 100 chrIX:325398-326066 1.0000 100 chrIX:336087-336629 1.0000 100 chrIX:370255-370597 1.0000 100 chrV:6181-6774 1.0000 100 chrV:53497-54258 1.0000 100 chrV:61136-62131 1.0000 100 chrV:67318-68828 1.0000 100 chrV:69106-69303 1.0000 100 chrV:78055-79414 1.0000 100 chrV:85112-85470 1.0000 100 chrV:86426-87036 1.0000 100 chrV:99897-100280 1.0000 100 chrV:117411-118299 1.0000 100 chrV:130978-131369 1.0000 100 chrV:135194-136137 1.0000 100 chrV:138467-140916 1.0000 100 chrV:176898-177451 1.0000 100 chrV:214537-214970 1.0000 100 chrV:249794-250602 1.0000 100 chrV:266448-268124 1.0000 100 chrV:270380-270688 1.0000 100 chrV:288166-288782 1.0000 100 chrV:305778-306424 1.0000 100 chrV:311742-312278 1.0000 100 chrV:354792-355343 1.0000 100 chrV:362129-362489 1.0000 100 chrV:396165-396579 1.0000 100 chrV:422840-424273 1.0000 100 chrV:431029-431920 1.0000 100 chrV:434396-435128 1.0000 100 chrV:435635-435940 1.0000 100 chrV:438495-438935 1.0000 100 chrV:441773-442676 1.0000 100 chrV:443075-443342 1.0000 100 chrV:469059-469708 1.0000 100 chrV:469895-470237 1.0000 100 chrV:486779-487634 1.0000 100 chrV:551013-551770 1.0000 100 chrVI:4518-4762 1.0000 100 chrVI:64158-65377 1.0000 100 chrVI:95418-95927 1.0000 100 chrVI:101370-101797 1.0000 100 chrVI:137284-137747 1.0000 100 chrVI:157897-158212 1.0000 100 chrVI:161988-163962 1.0000 100 chrVI:167207-167654 1.0000 100 chrVI:180634-181282 1.0000 100 chrVI:191145-191760 1.0000 100 chrVI:210419-211290 1.0000 100 chrVI:221013-222383 1.0000 100 chrVI:223266-224164 1.0000 100 chrVI:226430-227112 1.0000 100 chrVII:763-2072 1.0000 100 chrVII:10144-10510 1.0000 100 chrVII:110271-110786 1.0000 100 chrVII:115269-115717 1.0000 100 chrVII:122006-122562 1.0000 100 chrVII:148103-149586 1.0000 100 chrVII:185186-186435 1.0000 100 chrVII:186648-186899 1.0000 100 chrVII:205090-205786 1.0000 100 chrVII:254145-254697 1.0000 100 chrVII:277020-277439 1.0000 100 chrVII:286695-286923 1.0000 100 chrVII:287139-287742 1.0000 100 chrVII:310445-312230 1.0000 100 chrVII:319225-320133 1.0000 100 chrVII:328388-329297 1.0000 100 chrVII:364907-366714 1.0000 100 chrVII:371183-371529 1.0000 100 chrVII:401422-401618 1.0000 100 chrVII:405464-406145 1.0000 100 chrVII:411902-412588 1.0000 100 chrVII:422883-423493 1.0000 100 chrVII:438556-439866 1.0000 100 chrVII:440500-441031 1.0000 100 chrVII:531382-531798 1.0000 100 chrVII:533917-535200 1.0000 100 chrVII:541710-542149 1.0000 100 chrVII:544414-544870 1.0000 100 chrVII:555112-556659 1.0000 100 chrVII:561464-561706 1.0000 100 chrVII:648829-649350 1.0000 100 chrVII:661510-661958 1.0000 100 chrVII:700194-701162 1.0000 100 chrVII:706915-707267 1.0000 100 chrVII:726199-727049 1.0000 100 chrVII:730957-731401 1.0000 100 chrVII:736192-736659 1.0000 100 chrVII:738752-739598 1.0000 100 chrVII:774150-774647 1.0000 100 chrVII:779379-779756 1.0000 100 chrVII:788141-788739 1.0000 100 chrVII:794229-794512 1.0000 100 chrVII:823343-823708 1.0000 100 chrVII:828478-828987 1.0000 100 chrVII:844632-846032 1.0000 100 chrVII:856517-857680 1.0000 100 chrVII:876008-877940 1.0000 100 chrVII:878604-879101 1.0000 100 chrVII:882788-883943 1.0000 100 chrVII:919974-920240 1.0000 100 chrVII:930790-931159 1.0000 100 chrVII:1000352-1000628 1.0000 100 chrVII:1004021-1004407 1.0000 100 chrVII:1019678-1020840 1.0000 100 chrVIII:34396-35123 1.0000 100 chrVIII:62613-63019 1.0000 100 chrVIII:74924-75922 1.0000 100 chrVIII:103752-104267 1.0000 100 chrVIII:115870-116303 1.0000 100 chrVIII:125873-126331 1.0000 100 chrVIII:132760-133339 1.0000 100 chrVIII:134074-134762 1.0000 100 chrVIII:145839-146939 1.0000 100 chrVIII:148989-149243 1.0000 100 chrVIII:175009-175691 1.0000 100 chrVIII:237750-238085 1.0000 100 chrVIII:296701-297251 1.0000 100 chrVIII:358287-358786 1.0000 100 chrVIII:382580-383355 1.0000 100 chrVIII:388630-389205 1.0000 100 chrVIII:411051-411642 1.0000 100 chrVIII:451342-451848 1.0000 100 chrVIII:452017-453076 1.0000 100 chrVIII:466903-467191 1.0000 100 chrVIII:475513-475911 1.0000 100 chrVIII:505815-506226 1.0000 100 chrVIII:555743-556552 1.0000 100 chrVIII:556951-557192 1.0000 100 chrX:59017-59385 1.0000 100 chrX:73365-76495 1.0000 100 chrX:90035-90445 1.0000 100 chrX:115127-116279 1.0000 100 chrX:157425-157951 1.0000 100 chrX:160026-160285 1.0000 100 chrX:196285-197525 1.0000 100 chrX:204518-205006 1.0000 100 chrX:208563-209455 1.0000 100 chrX:227761-228585 1.0000 100 chrX:233460-234575 1.0000 100 chrX:354161-354546 1.0000 100 chrX:355206-355926 1.0000 100 chrX:374235-374804 1.0000 100 chrX:378005-378577 1.0000 100 chrX:390913-391614 1.0000 100 chrX:396525-397035 1.0000 100 chrX:414771-415277 1.0000 100 chrX:415599-416391 1.0000 100 chrX:422715-423281 1.0000 100 chrX:424287-424714 1.0000 100 chrX:517649-518112 1.0000 100 chrX:519952-521626 1.0000 100 chrX:523872-524355 1.0000 100 chrX:531617-532286 1.0000 100 chrX:538524-538773 1.0000 100 chrX:540759-541823 1.0000 100 chrX:542754-543251 1.0000 100 chrX:545395-545759 1.0000 100 chrX:607665-608180 1.0000 100 chrX:617675-618285 1.0000 100 chrX:651224-651621 1.0000 100 chrX:652112-652601 1.0000 100 chrX:690589-691045 1.0000 100 chrX:703237-703676 1.0000 100 chrX:745092-745745 1.0000 100 chrXI:767-1107 1.0000 100 chrXI:46713-46996 1.0000 100 chrXI:67791-68070 1.0000 100 chrXI:74413-74821 1.0000 100 chrXI:84009-84439 1.0000 100 chrXI:99723-99972 1.0000 100 chrXI:108726-109097 1.0000 100 chrXI:140788-141376 1.0000 100 chrXI:158191-159274 1.0000 100 chrXI:162431-162754 1.0000 100 chrXI:202334-203239 1.0000 100 chrXI:219578-220131 1.0000 100 chrXI:282813-284443 1.0000 100 chrXI:302654-303240 1.0000 100 chrXI:307907-308638 1.0000 100 chrXI:312878-314002 1.0000 100 chrXI:326438-327540 1.0000 100 chrXI:379471-379918 1.0000 100 chrXI:382197-382480 1.0000 100 chrXI:430894-431669 1.0000 100 chrXI:458000-458965 1.0000 100 chrXI:490734-491332 1.0000 100 chrXI:512921-513514 1.0000 100 chrXI:517790-518069 1.0000 100 chrXI:578779-579320 1.0000 100 chrXI:614150-614437 1.0000 100 chrXI:618770-619279 1.0000 100 chrXI:666491-666783 1.0000 100 chrXII:53-243 1.0000 100 chrXII:5573-5809 1.0000 100 chrXII:47781-49500 1.0000 100 chrXII:64283-65657 1.0000 100 chrXII:92414-92722 1.0000 100 chrXII:167755-168275 1.0000 100 chrXII:198679-199726 1.0000 100 chrXII:214675-215068 1.0000 100 chrXII:232109-234005 1.0000 100 chrXII:241641-242021 1.0000 100 chrXII:261215-263934 1.0000 100 chrXII:366018-366590 1.0000 100 chrXII:370613-370949 1.0000 100 chrXII:374212-374669 1.0000 100 chrXII:424173-424493 1.0000 100 chrXII:426873-427428 1.0000 100 chrXII:448510-448995 1.0000 100 chrXII:459591-460737 1.0000 100 chrXII:498349-499854 1.0000 100 chrXII:515334-517100 1.0000 100 chrXII:521511-522448 1.0000 100 chrXII:592317-592719 1.0000 100 chrXII:605236-605639 1.0000 100 chrXII:628103-629267 1.0000 100 chrXII:636754-639892 1.0000 100 chrXII:656841-657226 1.0000 100 chrXII:673573-674443 1.0000 100 chrXII:687668-687845 1.0000 100 chrXII:710652-710840 1.0000 100 chrXII:713143-713670 1.0000 100 chrXII:732006-732300 1.0000 100 chrXII:734600-736982 1.0000 100 chrXII:780900-781894 1.0000 100 chrXII:783877-784518 1.0000 100 chrXII:793733-795282 1.0000 100 chrXII:796381-797908 1.0000 100 chrXII:809762-810759 1.0000 100 chrXII:811810-815641 1.0000 100 chrXII:818506-819152 1.0000 100 chrXII:837912-839200 1.0000 100 chrXII:874734-875922 1.0000 100 chrXII:897629-898188 1.0000 100 chrXII:903373-903710 1.0000 100 chrXII:921728-923903 1.0000 100 chrXII:932069-932560 1.0000 100 chrXII:962813-963276 1.0000 100 chrXII:975783-976104 1.0000 100 chrXII:1018779-1019417 1.0000 100 chrXII:1028167-1028584 1.0000 100 chrXII:1051836-1052222 1.0000 100 chrXIII:91447-92089 1.0000 100 chrXIII:131594-132104 1.0000 100 chrXIII:145884-147212 1.0000 100 chrXIII:161811-164264 1.0000 100 chrXIII:168253-169012 1.0000 100 chrXIII:195940-196308 1.0000 100 chrXIII:224052-224468 1.0000 100 chrXIII:225053-225754 1.0000 100 chrXIII:253388-253563 1.0000 100 chrXIII:259001-259452 1.0000 100 chrXIII:290543-291086 1.0000 100 chrXIII:296713-298840 1.0000 100 chrXIII:302848-303109 1.0000 100 chrXIII:320985-321451 1.0000 100 chrXIII:352045-352625 1.0000 100 chrXIII:362939-363347 1.0000 100 chrXIII:372179-372752 1.0000 100 chrXIII:378922-379625 1.0000 100 chrXIII:420359-420866 1.0000 100 chrXIII:433519-433763 1.0000 100 chrXIII:463431-463872 1.0000 100 chrXIII:480400-481031 1.0000 100 chrXIII:504598-505216 1.0000 100 chrXIII:551005-551828 1.0000 100 chrXIII:552524-553309 1.0000 100 chrXIII:572653-573822 1.0000 100 chrXIII:586134-586899 1.0000 100 chrXIII:650695-651226 1.0000 100 chrXIII:731929-732644 1.0000 100 chrXIII:747694-748124 1.0000 100 chrXIII:754405-755271 1.0000 100 chrXIII:768185-768443 1.0000 100 chrXIII:808050-808529 1.0000 100 chrXIII:837729-838181 1.0000 100 chrXIII:861216-861437 1.0000 100 chrXIV:61980-63579 1.0000 100 chrXIV:88969-89717 1.0000 100 chrXIV:96001-96462 1.0000 100 chrXIV:102578-103544 1.0000 100 chrXIV:104579-105102 1.0000 100 chrXIV:241369-242190 1.0000 100 chrXIV:330517-331104 1.0000 100 chrXIV:374629-375100 1.0000 100 chrXIV:415133-416217 1.0000 100 chrXIV:442856-444252 1.0000 100 chrXIV:444441-445220 1.0000 100 chrXIV:493932-495699 1.0000 100 chrXIV:499104-499500 1.0000 100 chrXIV:499726-500688 1.0000 100 chrXIV:518070-518352 1.0000 100 chrXIV:518679-519130 1.0000 100 chrXIV:546489-547367 1.0000 100 chrXIV:560159-560788 1.0000 100 chrXIV:568052-568451 1.0000 100 chrXIV:569631-570050 1.0000 100 chrXIV:585516-586207 1.0000 100 chrXIV:602068-602572 1.0000 100 chrXIV:631695-632008 1.0000 100 chrXIV:632500-632872 1.0000 100 chrXIV:715989-716636 1.0000 100 chrXIV:725517-726361 1.0000 100 chrXIV:783722-784318 1.0000 100 chrXV:79739-80161 1.0000 100 chrXV:92798-94803 1.0000 100 chrXV:109543-110643 1.0000 100 chrXV:110860-111212 1.0000 100 chrXV:113531-113885 1.0000 100 chrXV:161090-161730 1.0000 100 chrXV:167960-168459 1.0000 100 chrXV:216274-216719 1.0000 100 chrXV:226427-226862 1.0000 100 chrXV:228049-228901 1.0000 100 chrXV:253812-254085 1.0000 100 chrXV:274457-275011 1.0000 100 chrXV:281684-282920 1.0000 100 chrXV:287736-288409 1.0000 100 chrXV:300830-301782 1.0000 100 chrXV:340126-340733 1.0000 100 chrXV:353914-354530 1.0000 100 chrXV:438442-439034 1.0000 100 chrXV:464275-464799 1.0000 100 chrXV:487435-487734 1.0000 100 chrXV:505026-505532 1.0000 100 chrXV:514383-514687 1.0000 100 chrXV:571717-572141 1.0000 100 chrXV:594314-594640 1.0000 100 chrXV:639186-639472 1.0000 100 chrXV:663482-664349 1.0000 100 chrXV:678233-679785 1.0000 100 chrXV:710066-710524 1.0000 100 chrXV:779672-780965 1.0000 100 chrXV:826077-826434 1.0000 100 chrXV:854043-854795 1.0000 100 chrXV:866528-867861 1.0000 100 chrXV:882178-882390 1.0000 100 chrXV:901425-901734 1.0000 100 chrXV:968123-968464 1.0000 100 chrXV:976378-976716 1.0000 100 chrXV:978797-979186 1.0000 100 chrXV:979758-981051 1.0000 100 chrXV:1003966-1004377 1.0000 100 chrXV:1025692-1026199 1.0000 100 chrXV:1027915-1029283 1.0000 100 chrXVI:55907-56348 1.0000 100 chrXVI:76180-76749 1.0000 100 chrXVI:135459-135834 1.0000 100 chrXVI:172847-174072 1.0000 100 chrXVI:188165-188944 1.0000 100 chrXVI:194160-194593 1.0000 100 chrXVI:209972-210454 1.0000 100 chrXVI:279975-280250 1.0000 100 chrXVI:280591-281398 1.0000 100 chrXVI:281558-282328 1.0000 100 chrXVI:302525-302981 1.0000 100 chrXVI:338711-339329 1.0000 100 chrXVI:340258-340785 1.0000 100 chrXVI:378652-379013 1.0000 100 chrXVI:406165-406703 1.0000 100 chrXVI:435617-436208 1.0000 100 chrXVI:519970-520554 1.0000 100 chrXVI:560015-560464 1.0000 100 chrXVI:572032-572518 1.0000 100 chrXVI:575112-575461 1.0000 100 chrXVI:581802-582485 1.0000 100 chrXVI:622221-622849 1.0000 100 chrXVI:689345-689853 1.0000 100 chrXVI:699647-700684 1.0000 100 chrXVI:731637-732323 1.0000 100 chrXVI:744071-744534 1.0000 100 chrXVI:768792-769480 1.0000 100 chrXVI:775640-776052 1.0000 100 chrXVI:794484-795166 1.0000 100 chrXVI:810576-811264 1.0000 100 chrXVI:819328-820228 1.0000 100 chrXVI:829919-830496 1.0000 100 chrXVI:856816-857120 1.0000 100 chrXVI:860144-860680 1.0000 100 chrXVI:879407-880550 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--AFT2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--AFT2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--AFT2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 486 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 48600 N= 486 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--AFT2/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF CDDRAGRTCMBGGGTTCGAYYCCSVKHGDG MEME-1 width = 30 sites = 74 llr = 1487 E-value = 9.5e-313 ******************************************************************************** -------------------------------------------------------------------------------- Motif CDDRAGRTCMBGGGTTCGAYYCCSVKHGDG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3257142:3:12::::2a1::1:3:3121 pos.-specific C 71:::1:17633::::a::25a76314111 probability G 2454276::1367a:::8:2:::446:546 matrix T :221:1:73:311:aa:::45:21:33231 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * ****** * Entropy 1.2 * * * ******* * (29.0 bits) 1.0 * ** * ******* **** 0.7 * ****** ******** **** * 0.5 * ***************** ******* * 0.2 ******************* ********** 0.0 ------------------------------ Multilevel CGGAAGGTCCCGGGTTCGATCCCCGGCGGG consensus GAAGG AATATC A CT TGCTATT sequence T G G A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDDRAGRTCMBGGGTTCGAYYCCSVKHGDG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIV:631695-632008 - 49 1.88e-16 GCTTAGGGTG CGGGAGGTCCCGGGTTCGAGTCCCGGCTCG CCCCCATTGA chrIII:123398-123791 - 37 1.88e-16 GCTTAGGGTG CGGGAGGTCCCGGGTTCGAGTCCCGGCTCG CCCCACATTG chrXIII:747694-748124 - 37 1.61e-12 GACTTCTAAT CAGAAGATTATGGGTTCGACCCCCATCGTG AGTGTTTTTT chrXIII:131594-132104 - 30 1.61e-12 GACTTCTAAT CAGAAGATTATGGGTTCGACCCCCATCGTG AGTGCTTTGT chrX:374235-374804 - 41 1.61e-12 GACTTCTAAT CAGAAGATTATGGGTTCGACCCCCATCGTG AGTGCTTTGT chrVII:828478-828987 - 45 1.61e-12 GACTTCTAAT CAGAAGATTATGGGTTCGACCCCCATCGTG AGTGCTTTTT chrVII:736192-736659 + 3 1.61e-12 AT CAGAAGATTATGGGTTCGACCCCCATCGTG AGTGTTGTTT chrIV:568707-569230 + 2 1.61e-12 T CAGAAGATTATGGGTTCGACCCCCATCGTG AGTGCTTTGT chrII:405673-406221 + 19 1.61e-12 GACTTCTAAT CAGAAGATTATGGGTTCGACCCCCATCGTG AGTGCTTTGT chrXV:464275-464799 + 31 4.40e-12 ACAAAGCATG CGAGAGGCCCTGGGTTCAATTCCCAGCTCG CCCCTTTTAT chrVIII:388630-389205 - 30 4.40e-12 ACAAAGCATG CGAGAGGCCCTGGGTTCAATTCCCAGCTCG CCCCATTATA chrX:233460-234575 + 11 5.05e-12 GGCTACGAAC CAGGAGATTCCAGGTTCGAGTCCTGGCGGG GAAGAATATT chrXVI:860144-860680 + 54 5.79e-12 ACGTTGCCAT CGTTGGGCCCCCGGTTCGATTCCGGGCTTG CGCAGATTTT chrXV:226427-226862 - 21 5.79e-12 ACGTTGCCAT CGTTGGGCCCCCGGTTCGATTCCGGGCTTG CGCAAATTTT chrVII:930790-931159 - 33 5.79e-12 ACGTTGCCAT CGTTGGGCCCCCGGTTCGATTCCGGGCTTG CGCATTTTTT chrVI:180634-181282 - 70 5.79e-12 T CGTTGGGCCCCCGGTTCGATTCCGGGCTTG CGCAGTCCTT chrVIII:475513-475911 - 48 1.13e-11 CCTTCACACG GCAAAGGTCCCGAGTTCGATCCTCGGTTGG AACATTTTAA chrXII:214675-215068 - 66 1.29e-11 GCAAG GAAGAGGTCATCGGTTCGATTCCGGTTGCG TCCATTTATT chrVII:738752-739598 + 37 1.29e-11 TGCTAATAAC GCGGGGATCAGCGGTTCGATCCCGCTAGAG ACCATTTACT chrV:443075-443342 - 48 1.29e-11 TGCTAATAAC GCGGGGATCAGCGGTTCGATCCCGCTAGAG ACCATATTTT chrV:311742-312278 - 67 1.29e-11 CAAG GAAGAGGTCATCGGTTCGATTCCGGTTGCG TCCAATGAAA chrXVI:581802-582485 + 8 1.47e-11 TCTTAAT CATAAGGTTAGGGGTTCGAGCCCCCTACAG GGCTTTCTTT chrX:414771-415277 + 31 1.47e-11 GACTCTTAAT CATAAGGTTAGGGGTTCGAGCCCCCTACAG GGCTAATATT chrV:435635-435940 - 19 1.47e-11 GACTCTTAAT CATAAGGTTAGGGGTTCGAGCCCCCTACAG GGCTTTCTTT chrIX:300003-300522 - 20 1.47e-11 GACTCTTAAT CATAAGGTTAGGGGTTCGAGCCCCCTACAG GGCTATCTTT chrIV:1351907-1353082 - 26 1.47e-11 GACTCTTAAT CATAAGGTTAGGGGTTCGAGCCCCCTACAG GGCTATCTTT chrIV:1016940-1017508 - 37 1.47e-11 ACGTTCTCAC CGTGGAGACCGGGGTTCGACTCCCCGCTTC GGAGTTTCTT chrIII:150983-151568 - 63 1.47e-11 CTCTTAAT CATAAGGTTAGGGGTTCGAGCCCCCTACAG GGCTTTCTTT chrII:326475-327172 - 23 3.13e-11 CCTTTACACG GCGAAGATCCCGAGTTCGAACCTCGGTTGG ATCAAACTCT chrXIII:420359-420866 - 30 7.22e-11 GCTTAACACG CAGAACGTCCCCAGTTCGATCCTGGGCGAA ATCATTTTTA chrXIII:372179-372752 - 34 7.22e-11 GCTTAACACG CAGAACGTCCCCAGTTCGATCCTGGGCGAA ATCATTTTTT chrXII:374212-374669 + 4 7.22e-11 AAC CAGAAGATTCCAGGTTCAAGTCCTGGCGGG GAAGATTTTT chrXI:490734-491332 + 24 7.22e-11 GGCTACGAAC CAGAAGATTCCAGGTTCAAGTCCTGGCGGG GAAGAATTTT chrVII:823343-823708 + 47 7.22e-11 GCTTAACACG CAGAACGTCCCCAGTTCGATCCTGGGCGAA ATCATTTTTT chrIV:802588-802842 - 70 7.22e-11 T CCGGACAACCCCGGTTCGAATCCGGGTAGG ACCTCTTTTT chrIV:619679-620307 - 30 7.22e-11 GGCTACGAAC CAGAAGATTCCAGGTTCAAGTCCTGGCGGG GAAGATTTTT chrIII:168108-168557 - 23 7.22e-11 CGGTTTTGAT CCGGACAACCCCGGTTCGAATCCGGGTAGG ACCTTTTTTT chrXVI:209972-210454 - 33 8.11e-11 ACGCTTTCAC CGTGGAGACCGGGGTTCGACTCCCCGTATC GGAGTTTTCT chrVII:541710-542149 + 9 8.11e-11 GCTTTCAC CGTGGAGACCGGGGTTCGACTCCCCGTATC GGAGTGTTCT chrVII:401422-401618 - 61 8.11e-11 ACGCTTTCAC CGTGGAGACCGGGGTTCGACTCCCCGTATC GGAGTATTTT chrV:176898-177451 + 13 8.11e-11 ACGCTTTCAC CGTGGAGACCGGGGTTCGACTCCCCGTATC GGAGTACTTT chrXIII:808050-808529 - 11 1.02e-10 CGGTTCTGAT CCGAACAACCCCAGTTCGAATCCGGGTGGG ACCTTCCCTT chrXV:438442-439034 + 17 1.14e-10 GCAAGGATAC CGAAATGTCAGGGGTTCGAGCCCCCTATGA GGAGTTCTTT chrXI:578779-579320 + 28 1.14e-10 GCAAGGATAC CGAAATGTCAGGGGTTCGAGCCCCCTATGA GGAGTTCTTT chrIV:359362-359886 + 65 1.14e-10 GCAAGGATAC CGAAATGTCAGGGGTTCGAGCCCCCTATGA GGAGTT chrXIV:96001-96462 - 64 1.28e-10 CTTCCAA GGTGGGGACACGGGTTCGATTCTCGTACCG CTCAAATTTT chrIV:1095128-1095715 - 3 1.59e-10 GTCAAGATAT CTGGAGGTCCTGTGTTCGATCCACAGAGTT CG chrXVI:856816-857120 + 23 8.37e-10 CCTTAGCATG GGAGAGGTCTCCGGTTCGATTCCGGACTCG TCCATTTTAA chrVII:774150-774647 + 40 8.37e-10 CCTTAGCATG GGAGAGGTCTCCGGTTCGATTCCGGACTCG TCCAAATTTT chrXVI:622221-622849 - 59 9.23e-10 GTCAAGTTAT CTGGAGGTCCTGTGTTCGATCCACAGAATT CGCATTTATT chrXVI:560015-560464 - 13 9.23e-10 GTCAAGTTAT CTGGAGGTCCTGTGTTCGATCCACAGAATT CGCATTTCTA chrXIII:352045-352625 + 52 9.23e-10 GTCAAGTTAT CTGGAGGTCCTGTGTTCGATCCACAGAATT CGCATTAATT chrVII:440500-441031 - 5 9.23e-10 GTCAAGTTAT CTGGAGGTCCTGTGTTCGATCCACAGAATT CGCA chrXIV:104579-105102 + 54 1.79e-09 CACTAGTAAT GTGGAGATCATCGGTTCAAATCCGATTGGA AGCATATTAT chrII:266189-266733 + 6 1.79e-09 GTAAT GTGGAGATCATCGGTTCAAATCCGATTGGA AGCATTTTTT chrX:422715-423281 + 28 2.57e-09 GTCTCATAAT CTGAAGGTCGAGAGTTCGAACCTCCCCTGG AGCACATTTT chrXIV:632500-632872 + 3 3.06e-09 AT CGCAAGATCGTGAGTTCAACCCTCACTGGG GTCGTTTTTT chrVII:730957-731401 + 48 3.06e-09 GACTGTTAAT CGCAAGATCGTGAGTTCAACCCTCACTGGG GTCGTTTTTT chrVI:137284-137747 - 25 3.06e-09 GACTGTTAAT CGCAAGATCGTGAGTTCAACCCTCACTGGG GTCGTTTTTT chrXVI:435617-436208 - 35 4.34e-09 GATTGCAAAT CTGTTGGTCCTTAGTTCGATCCTGAGTGCG AGCTTTCTTT chrVII:706915-707267 - 71 4.34e-09 . CTGTTGGTCCTTAGTTCGATCCTGAGTGCG AGCTTTTTAT chrX:542754-543251 - 8 1.35e-08 ACTACGAAAT CTTGAGATCGGGCGTTCGACTCGCCCCCGG GAGATTT chrXII:426873-427428 + 70 3.06e-08 CGCTTGTCGC GTGCCAGATCGGGGTTCAATTCCCCGTCGC G chrX:204518-205006 + 61 3.06e-08 CGCTTGTCGC GTGCCAGATCGGGGTTCAATTCCCCGTCGC GGAGATTTTT chrIX:336087-336629 - 45 3.06e-08 CGCTTGTCGC GTGCCAGATCGGGGTTCAATTCCCCGTCGC GGAGATTTTT chrVIII:466903-467191 + 31 4.66e-08 CACTTGTAAT GCAAAGGTCGCTAGTTCAATTCTGGCAGGT GGCATTATAC chrIII:149719-150172 + 63 4.66e-08 GGCTCATAAC CCTGATGTCCTCGGATCGAAACCGAGCGGC GCTATTAA chrIV:519652-519908 - 67 4.99e-08 TTAT TGAAGGATGCGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrII:347383-347945 - 43 4.99e-08 AAAATATTAC TGAAGGATGCGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrII:9455-9904 - 8 4.99e-08 AAAAAAATAC TGAAGGATGCGAGGTTCGAACTCGCGCGGA CAACCGT chrXIII:362939-363347 + 9 6.52e-08 GTTGTGGC CGATGAAACCCTGGTTCGATTCTAGGAGAT GGCATTTTCT chrXI:312878-314002 - 15 6.52e-08 TCGTTGTGGC CGATGAAACCCTGGTTCGATTCTAGGAGAT GGCATTTTAT chrVIII:62613-63019 + 27 6.52e-08 TCGTTGTGGC CGATGAAACCCTGGTTCGATTCTAGGAGAT GGCATTTATT chrXVI:744071-744534 + 70 9.61e-08 CACTTGTAAT GCAAAGGTCGTTAGTTCAATTCTGACAGGT G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDDRAGRTCMBGGGTTCGAYYCCSVKHGDG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631695-632008 1.9e-16 48_[-1]_22 chrIII:123398-123791 1.9e-16 36_[-1]_34 chrXIII:747694-748124 1.6e-12 36_[-1]_34 chrXIII:131594-132104 1.6e-12 29_[-1]_41 chrX:374235-374804 1.6e-12 40_[-1]_30 chrVII:828478-828987 1.6e-12 44_[-1]_26 chrVII:736192-736659 1.6e-12 2_[+1]_68 chrIV:568707-569230 1.6e-12 1_[+1]_69 chrII:405673-406221 1.6e-12 18_[+1]_52 chrXV:464275-464799 4.4e-12 30_[+1]_40 chrVIII:388630-389205 4.4e-12 29_[-1]_41 chrX:233460-234575 5e-12 10_[+1]_60 chrXVI:860144-860680 5.8e-12 53_[+1]_17 chrXV:226427-226862 5.8e-12 20_[-1]_50 chrVII:930790-931159 5.8e-12 32_[-1]_38 chrVI:180634-181282 5.8e-12 69_[-1]_1 chrVIII:475513-475911 1.1e-11 47_[-1]_23 chrXII:214675-215068 1.3e-11 65_[-1]_5 chrVII:738752-739598 1.3e-11 36_[+1]_34 chrV:443075-443342 1.3e-11 47_[-1]_23 chrV:311742-312278 1.3e-11 66_[-1]_4 chrXVI:581802-582485 1.5e-11 7_[+1]_63 chrX:414771-415277 1.5e-11 30_[+1]_40 chrV:435635-435940 1.5e-11 18_[-1]_52 chrIX:300003-300522 1.5e-11 19_[-1]_51 chrIV:1351907-1353082 1.5e-11 25_[-1]_45 chrIV:1016940-1017508 1.5e-11 36_[-1]_34 chrIII:150983-151568 1.5e-11 62_[-1]_8 chrII:326475-327172 3.1e-11 22_[-1]_48 chrXIII:420359-420866 7.2e-11 29_[-1]_41 chrXIII:372179-372752 7.2e-11 33_[-1]_37 chrXII:374212-374669 7.2e-11 3_[+1]_67 chrXI:490734-491332 7.2e-11 23_[+1]_47 chrVII:823343-823708 7.2e-11 46_[+1]_24 chrIV:802588-802842 7.2e-11 69_[-1]_1 chrIV:619679-620307 7.2e-11 29_[-1]_41 chrIII:168108-168557 7.2e-11 22_[-1]_48 chrXVI:209972-210454 8.1e-11 32_[-1]_38 chrVII:541710-542149 8.1e-11 8_[+1]_62 chrVII:401422-401618 8.1e-11 60_[-1]_10 chrV:176898-177451 8.1e-11 12_[+1]_58 chrXIII:808050-808529 1e-10 10_[-1]_60 chrXV:438442-439034 1.1e-10 16_[+1]_54 chrXI:578779-579320 1.1e-10 27_[+1]_43 chrIV:359362-359886 1.1e-10 64_[+1]_6 chrXIV:96001-96462 1.3e-10 63_[-1]_7 chrIV:1095128-1095715 1.6e-10 2_[-1]_68 chrXVI:856816-857120 8.4e-10 22_[+1]_48 chrVII:774150-774647 8.4e-10 39_[+1]_31 chrXVI:622221-622849 9.2e-10 58_[-1]_12 chrXVI:560015-560464 9.2e-10 12_[-1]_58 chrXIII:352045-352625 9.2e-10 51_[+1]_19 chrVII:440500-441031 9.2e-10 4_[-1]_66 chrXIV:104579-105102 1.8e-09 53_[+1]_17 chrII:266189-266733 1.8e-09 5_[+1]_65 chrX:422715-423281 2.6e-09 27_[+1]_43 chrXIV:632500-632872 3.1e-09 2_[+1]_68 chrVII:730957-731401 3.1e-09 47_[+1]_23 chrVI:137284-137747 3.1e-09 24_[-1]_46 chrXVI:435617-436208 4.3e-09 34_[-1]_36 chrVII:706915-707267 4.3e-09 70_[-1] chrX:542754-543251 1.4e-08 7_[-1]_63 chrXII:426873-427428 3.1e-08 69_[+1]_1 chrX:204518-205006 3.1e-08 60_[+1]_10 chrIX:336087-336629 3.1e-08 44_[-1]_26 chrVIII:466903-467191 4.7e-08 30_[+1]_40 chrIII:149719-150172 4.7e-08 62_[+1]_8 chrIV:519652-519908 5e-08 66_[-1]_4 chrII:347383-347945 5e-08 42_[-1]_28 chrII:9455-9904 5e-08 7_[-1]_63 chrXIII:362939-363347 6.5e-08 8_[+1]_62 chrXI:312878-314002 6.5e-08 14_[-1]_56 chrVIII:62613-63019 6.5e-08 26_[+1]_44 chrXVI:744071-744534 9.6e-08 69_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDDRAGRTCMBGGGTTCGAYYCCSVKHGDG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CDDRAGRTCMBGGGTTCGAYYCCSVKHGDG width=30 seqs=74 chrXIV:631695-632008 ( 49) CGGGAGGTCCCGGGTTCGAGTCCCGGCTCG 1 chrIII:123398-123791 ( 37) CGGGAGGTCCCGGGTTCGAGTCCCGGCTCG 1 chrXIII:747694-748124 ( 37) CAGAAGATTATGGGTTCGACCCCCATCGTG 1 chrXIII:131594-132104 ( 30) CAGAAGATTATGGGTTCGACCCCCATCGTG 1 chrX:374235-374804 ( 41) CAGAAGATTATGGGTTCGACCCCCATCGTG 1 chrVII:828478-828987 ( 45) CAGAAGATTATGGGTTCGACCCCCATCGTG 1 chrVII:736192-736659 ( 3) CAGAAGATTATGGGTTCGACCCCCATCGTG 1 chrIV:568707-569230 ( 2) CAGAAGATTATGGGTTCGACCCCCATCGTG 1 chrII:405673-406221 ( 19) CAGAAGATTATGGGTTCGACCCCCATCGTG 1 chrXV:464275-464799 ( 31) CGAGAGGCCCTGGGTTCAATTCCCAGCTCG 1 chrVIII:388630-389205 ( 30) CGAGAGGCCCTGGGTTCAATTCCCAGCTCG 1 chrX:233460-234575 ( 11) CAGGAGATTCCAGGTTCGAGTCCTGGCGGG 1 chrXVI:860144-860680 ( 54) CGTTGGGCCCCCGGTTCGATTCCGGGCTTG 1 chrXV:226427-226862 ( 21) CGTTGGGCCCCCGGTTCGATTCCGGGCTTG 1 chrVII:930790-931159 ( 33) CGTTGGGCCCCCGGTTCGATTCCGGGCTTG 1 chrVI:180634-181282 ( 70) CGTTGGGCCCCCGGTTCGATTCCGGGCTTG 1 chrVIII:475513-475911 ( 48) GCAAAGGTCCCGAGTTCGATCCTCGGTTGG 1 chrXII:214675-215068 ( 66) GAAGAGGTCATCGGTTCGATTCCGGTTGCG 1 chrVII:738752-739598 ( 37) GCGGGGATCAGCGGTTCGATCCCGCTAGAG 1 chrV:443075-443342 ( 48) GCGGGGATCAGCGGTTCGATCCCGCTAGAG 1 chrV:311742-312278 ( 67) GAAGAGGTCATCGGTTCGATTCCGGTTGCG 1 chrXVI:581802-582485 ( 8) CATAAGGTTAGGGGTTCGAGCCCCCTACAG 1 chrX:414771-415277 ( 31) CATAAGGTTAGGGGTTCGAGCCCCCTACAG 1 chrV:435635-435940 ( 19) CATAAGGTTAGGGGTTCGAGCCCCCTACAG 1 chrIX:300003-300522 ( 20) CATAAGGTTAGGGGTTCGAGCCCCCTACAG 1 chrIV:1351907-1353082 ( 26) CATAAGGTTAGGGGTTCGAGCCCCCTACAG 1 chrIV:1016940-1017508 ( 37) CGTGGAGACCGGGGTTCGACTCCCCGCTTC 1 chrIII:150983-151568 ( 63) CATAAGGTTAGGGGTTCGAGCCCCCTACAG 1 chrII:326475-327172 ( 23) GCGAAGATCCCGAGTTCGAACCTCGGTTGG 1 chrXIII:420359-420866 ( 30) CAGAACGTCCCCAGTTCGATCCTGGGCGAA 1 chrXIII:372179-372752 ( 34) CAGAACGTCCCCAGTTCGATCCTGGGCGAA 1 chrXII:374212-374669 ( 4) CAGAAGATTCCAGGTTCAAGTCCTGGCGGG 1 chrXI:490734-491332 ( 24) CAGAAGATTCCAGGTTCAAGTCCTGGCGGG 1 chrVII:823343-823708 ( 47) CAGAACGTCCCCAGTTCGATCCTGGGCGAA 1 chrIV:802588-802842 ( 70) CCGGACAACCCCGGTTCGAATCCGGGTAGG 1 chrIV:619679-620307 ( 30) CAGAAGATTCCAGGTTCAAGTCCTGGCGGG 1 chrIII:168108-168557 ( 23) CCGGACAACCCCGGTTCGAATCCGGGTAGG 1 chrXVI:209972-210454 ( 33) CGTGGAGACCGGGGTTCGACTCCCCGTATC 1 chrVII:541710-542149 ( 9) CGTGGAGACCGGGGTTCGACTCCCCGTATC 1 chrVII:401422-401618 ( 61) CGTGGAGACCGGGGTTCGACTCCCCGTATC 1 chrV:176898-177451 ( 13) CGTGGAGACCGGGGTTCGACTCCCCGTATC 1 chrXIII:808050-808529 ( 11) CCGAACAACCCCAGTTCGAATCCGGGTGGG 1 chrXV:438442-439034 ( 17) CGAAATGTCAGGGGTTCGAGCCCCCTATGA 1 chrXI:578779-579320 ( 28) CGAAATGTCAGGGGTTCGAGCCCCCTATGA 1 chrIV:359362-359886 ( 65) CGAAATGTCAGGGGTTCGAGCCCCCTATGA 1 chrXIV:96001-96462 ( 64) GGTGGGGACACGGGTTCGATTCTCGTACCG 1 chrIV:1095128-1095715 ( 3) CTGGAGGTCCTGTGTTCGATCCACAGAGTT 1 chrXVI:856816-857120 ( 23) GGAGAGGTCTCCGGTTCGATTCCGGACTCG 1 chrVII:774150-774647 ( 40) GGAGAGGTCTCCGGTTCGATTCCGGACTCG 1 chrXVI:622221-622849 ( 59) CTGGAGGTCCTGTGTTCGATCCACAGAATT 1 chrXVI:560015-560464 ( 13) CTGGAGGTCCTGTGTTCGATCCACAGAATT 1 chrXIII:352045-352625 ( 52) CTGGAGGTCCTGTGTTCGATCCACAGAATT 1 chrVII:440500-441031 ( 5) CTGGAGGTCCTGTGTTCGATCCACAGAATT 1 chrXIV:104579-105102 ( 54) GTGGAGATCATCGGTTCAAATCCGATTGGA 1 chrII:266189-266733 ( 6) GTGGAGATCATCGGTTCAAATCCGATTGGA 1 chrX:422715-423281 ( 28) CTGAAGGTCGAGAGTTCGAACCTCCCCTGG 1 chrXIV:632500-632872 ( 3) CGCAAGATCGTGAGTTCAACCCTCACTGGG 1 chrVII:730957-731401 ( 48) CGCAAGATCGTGAGTTCAACCCTCACTGGG 1 chrVI:137284-137747 ( 25) CGCAAGATCGTGAGTTCAACCCTCACTGGG 1 chrXVI:435617-436208 ( 35) CTGTTGGTCCTTAGTTCGATCCTGAGTGCG 1 chrVII:706915-707267 ( 71) CTGTTGGTCCTTAGTTCGATCCTGAGTGCG 1 chrX:542754-543251 ( 8) CTTGAGATCGGGCGTTCGACTCGCCCCCGG 1 chrXII:426873-427428 ( 70) GTGCCAGATCGGGGTTCAATTCCCCGTCGC 1 chrX:204518-205006 ( 61) GTGCCAGATCGGGGTTCAATTCCCCGTCGC 1 chrIX:336087-336629 ( 45) GTGCCAGATCGGGGTTCAATTCCCCGTCGC 1 chrVIII:466903-467191 ( 31) GCAAAGGTCGCTAGTTCAATTCTGGCAGGT 1 chrIII:149719-150172 ( 63) CCTGATGTCCTCGGATCGAAACCGAGCGGC 1 chrIV:519652-519908 ( 67) TGAAGGATGCGAGGTTCGAACTCGCGCGGA 1 chrII:347383-347945 ( 43) TGAAGGATGCGAGGTTCGAACTCGCGCGGA 1 chrII:9455-9904 ( 8) TGAAGGATGCGAGGTTCGAACTCGCGCGGA 1 chrXIII:362939-363347 ( 9) CGATGAAACCCTGGTTCGATTCTAGGAGAT 1 chrXI:312878-314002 ( 15) CGATGAAACCCTGGTTCGATTCTAGGAGAT 1 chrVIII:62613-63019 ( 27) CGATGAAACCCTGGTTCGATTCTAGGAGAT 1 chrXVI:744071-744534 ( 70) GCAAAGGTCGTTAGTTCAATTCTGACAGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDDRAGRTCMBGGGTTCGAYYCCSVKHGDG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 34506 bayes= 10.2868 E= 9.5e-313 -1285 197 19 -293 -6 -49 100 -71 -35 -223 132 -35 57 -223 100 -135 115 -223 36 -352 -106 -123 192 -252 34 -1285 168 -1285 -61 -123 -1285 121 -1285 186 -223 -20 0 158 -100 -352 -452 83 71 12 -171 44 155 -171 -71 -381 194 -220 -1285 -1285 240 -1285 -452 -1285 -1285 167 -1285 -1285 -1285 169 -1285 240 -1285 -1285 -61 -1285 207 -1285 169 -1285 -1285 -1285 -106 19 9 48 -452 140 -1285 65 -1285 234 -1285 -293 -220 186 -381 -43 -293 155 89 -252 0 77 94 -1285 -352 -100 158 0 -6 114 -1285 -13 -120 -35 136 -43 -71 -35 100 -13 -106 -64 165 -120 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDDRAGRTCMBGGGTTCGAYYCCSVKHGDG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 74 E= 9.5e-313 0.000000 0.743243 0.216216 0.040541 0.297297 0.135135 0.378378 0.189189 0.243243 0.040541 0.472973 0.243243 0.459459 0.040541 0.378378 0.121622 0.689189 0.040541 0.243243 0.027027 0.148649 0.081081 0.716216 0.054054 0.391892 0.000000 0.608108 0.000000 0.202703 0.081081 0.000000 0.716216 0.000000 0.689189 0.040541 0.270270 0.310811 0.567568 0.094595 0.027027 0.013514 0.337838 0.310811 0.337838 0.094595 0.256757 0.554054 0.094595 0.189189 0.013514 0.729730 0.067568 0.000000 0.000000 1.000000 0.000000 0.013514 0.000000 0.000000 0.986486 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.202703 0.000000 0.797297 0.000000 1.000000 0.000000 0.000000 0.000000 0.148649 0.216216 0.202703 0.432432 0.013514 0.500000 0.000000 0.486486 0.000000 0.959459 0.000000 0.040541 0.067568 0.689189 0.013514 0.229730 0.040541 0.554054 0.351351 0.054054 0.310811 0.324324 0.364865 0.000000 0.027027 0.094595 0.567568 0.310811 0.297297 0.418919 0.000000 0.283784 0.135135 0.148649 0.486486 0.229730 0.189189 0.148649 0.378378 0.283784 0.148649 0.121622 0.594595 0.135135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDDRAGRTCMBGGGTTCGAYYCCSVKHGDG MEME-1 regular expression -------------------------------------------------------------------------------- [CG][GA][GAT][AG][AG]G[GA][TA][CT][CA][CTG][GC]GGTTC[GA]A[TCG][CT]C[CT][CG][GCA][GT][CAT][GT][GT]G -------------------------------------------------------------------------------- Time 222.27 secs. ******************************************************************************** ******************************************************************************** MOTIF DTRGYBYAGTGGKTARAGSS MEME-2 width = 20 sites = 95 llr = 1210 E-value = 1.2e-153 ******************************************************************************** -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTARAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:4:::192::::26452:: pos.-specific C ::::643:::1::2:12153 probability G 3:6a:32:8:6a41142535 matrix T 4a::334::a3:55311121 bits 2.4 * 2.2 * * 1.9 * * 1.7 * * * Relative 1.4 * * *** * Entropy 1.2 * * *** * (18.4 bits) 1.0 **** *** ** 0.7 **** ****** ** 0.5 ***** ****** * *** 0.2 ******************** 0.0 -------------------- Multilevel TTGGCCTAGTGGTTAAAGCG consensus G A TTC A T GATGGAGC sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTARAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrIV:1150683-1151173 - 38 5.64e-11 TTCAGTCCCA GTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrXIII:259001-259452 - 38 1.34e-10 GTATGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167755-168275 - 35 1.34e-10 ATATGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrX:523872-524355 - 5 1.34e-10 TAAAGGCAAC TTGGCCGAGTGGTTAAGGCG AAAG chrIV:1305413-1305867 + 46 1.34e-10 TTAAGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXVI:689345-689853 + 22 3.79e-10 TTTGGGCACT ATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrV:288166-288782 - 75 3.79e-10 GGCACT ATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIII:227734-228231 + 16 3.79e-10 AAATGGCACT ATGGCCGAGTGGTTAAGGCG AGAGACTCGA chrXIII:320985-321451 - 26 1.21e-09 AATCGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:774150-774647 + 7 1.21e-09 GGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:115269-115717 + 51 2.77e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrIV:359362-359886 + 9 2.77e-09 CATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXIV:602068-602572 + 48 4.95e-09 CAATGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrVII:738752-739598 + 3 4.95e-09 TC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:183297-183709 - 35 4.95e-09 TCCTGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrII:197177-197842 + 41 4.95e-09 TCAAGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:605236-605639 - 20 5.96e-09 AAATGCTCGT GTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrIV:884249-884575 + 5 5.96e-09 TCGT GTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXII:962813-963276 - 36 8.55e-09 CGACGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXI:84009-84439 + 40 8.55e-09 GTATGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424287-424714 - 40 8.55e-09 AGATGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrIV:519652-519908 + 19 8.55e-09 TTACGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXIV:104579-105102 + 21 1.68e-08 CTGAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIX:325398-326066 + 72 1.68e-08 ACGAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAG chrXIII:480400-481031 - 3 2.32e-08 AGTAGCCTTG TTGGCGCAATCGGTAGCGCG TA chrVII:122006-122562 + 41 2.32e-08 ATTAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:226430-227112 - 14 2.32e-08 AAATGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:435635-435940 - 62 2.32e-08 AAGAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrIX:300003-300522 - 63 2.32e-08 AATAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1351907-1353082 - 69 2.32e-08 AATAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201515-1202008 + 45 2.32e-08 AATAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrXVI:560015-560464 - 75 2.71e-08 GCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIV:374629-375100 + 61 2.71e-08 ATAAGCGGAC TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:352045-352625 + 1 2.71e-08 . TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:358287-358786 - 58 2.71e-08 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237750-238085 - 47 2.71e-08 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVII:440500-441031 - 67 2.71e-08 ATATGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:1095128-1095715 - 65 2.71e-08 GTTAGCGGAC TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:619679-620307 - 73 2.71e-08 TGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrII:36230-36587 + 46 2.71e-08 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXI:74413-74821 + 63 1.11e-07 ATTAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVII:730957-731401 + 14 1.11e-07 AAAAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVI:137284-137747 - 69 1.11e-07 GACTGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127505-127881 + 79 1.11e-07 AAATGACTCC ATGGCCAAGTTGGTTAAGGC GT chrXVI:860144-860680 + 23 1.63e-07 ACAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:572032-572518 + 50 1.63e-07 CTTCGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226427-226862 - 62 1.63e-07 TTCAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:396525-397035 - 41 1.63e-07 GTAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:930790-931159 - 74 1.63e-07 AGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:700194-701162 + 53 4.58e-07 AATTGGTACT CTGGCCGAGTGGTCTAAGGC GTCAGGTCGA chrXIII:195940-196308 - 71 5.10e-07 ACAAGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXII:92414-92722 + 36 5.10e-07 ATAAGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrI:138930-139351 + 68 5.10e-07 GTACGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIII:504598-505216 + 44 5.66e-07 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXIII:420359-420866 - 74 5.66e-07 AGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:372179-372752 - 78 5.66e-07 TTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:379471-379918 + 42 5.66e-07 AATAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438495-438935 + 41 5.66e-07 ATTAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:837729-838181 + 29 1.50e-06 TTGACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:542754-543251 - 67 1.50e-06 AATACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:167207-167654 + 63 1.50e-06 ACGACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrV:78055-79414 + 36 2.15e-06 TGGTCCATCG ATGGTGTCGTCGGTAGAACC TTGTACAAGA chrXV:110860-111212 - 22 3.03e-06 ACCCGGGCGG TTAGTGTAGTGGTTATCATC CCACCCTTCC chrXV:663482-664349 - 3 3.29e-06 TCAACAAATA GTGGTTTCGTGGTCTAGTCG GT chrXVI:744071-744534 + 38 3.57e-06 AAAAGCCTCC TTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrXIII:808050-808529 - 53 3.57e-06 AAAAGGTCCT ATAGTGTAGTGGTTATCACT TTCGGTTCTG chrXII:426873-427428 + 38 3.57e-06 CTTATCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:204518-205006 + 29 3.57e-06 AAAATCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:1004021-1004407 + 58 3.57e-06 GTTTGCCTCC TTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVII:661510-661958 + 71 3.57e-06 ATTTGCCTCC TTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVII:544414-544870 - 31 3.57e-06 TTCTTCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:531382-531798 + 76 3.57e-06 TACTTCCGTG ATAGTTTAATGGTCAGAATG GGCGC chrV:130978-131369 - 5 3.57e-06 AAGAGGTTTT ATAGTGTAGTGGTTATCACT TTCG chrIX:324144-324601 - 27 3.57e-06 ATATTCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrIV:568707-569230 + 52 3.57e-06 TTCTTCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrIII:168108-168557 - 65 3.57e-06 TCCTGGTCCT ATAGTGTAGTGGTTATCACT TTCGGTTTTG chrII:405673-406221 + 69 3.57e-06 TTCTTCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrII:350593-351044 + 65 3.57e-06 AAAGGGTTTT ATAGTGTAGTGGTTATCACT TTCGGTTTTG chrII:326475-327172 - 67 4.20e-06 TCCGGGTCCA ATGGTCCAGTGGTTCAAGAC GTCGCCTTTA chrXI:382197-382480 - 69 6.71e-06 TCTACATACC GTGGAGGAATGGGTGGAACG GTTACTGACG chrXI:302654-303240 + 27 7.24e-06 AGATGAAGCG GTGGCTCAATGGTAGAGCTT TCGACTCCAA chrVII:287139-287742 - 40 7.24e-06 AGATGAAGCG GTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXVI:775640-776052 - 15 8.40e-06 AAAAGCTCGT ATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXVI:435617-436208 - 77 8.40e-06 TCGT ATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrIII:123398-123791 - 79 1.05e-05 GT GTGGTCTAGAGGTATGATTC TCGCTTAGGG chrII:167869-168615 - 13 1.70e-05 CGATGAGAAC GTAGGCGAGAGGTTAGACGG TATTGCCACT chrXIII:747694-748124 - 79 1.95e-05 GC GTGGCGTAATGGCAACGCGT CTGACTTCTA chrXIII:131594-132104 - 72 1.95e-05 TTAGCTCGC GTGGCGTAATGGCAACGCGT CTGACTTCTA chrXVI:622221-622849 + 25 4.42e-05 AAGAACCAAC TTTCCGCAGTTGGCAGGTCG AAAAAATAAA chrXII:673573-674443 + 67 4.42e-05 GTCATAACGC GTGGTGTTGTGGTTTTGCTT AATTTTTTTA chrVII:185186-186435 - 10 7.42e-05 TTTCAACGAA ATAGCCTTGTTGGCGCAATC GGTAGCGCG chrXI:312878-314002 - 57 8.75e-05 GTTTGCCATC TTAGTATAGTGGTTAGTACA CATCGTTGTG chrXIII:731929-732644 + 39 1.20e-04 TCTCAAAATA GTTTCCGAGTTGGAAGCCTG AGTTTTTCAA chrIV:1016940-1017508 - 79 4.16e-04 AT GTAGTGTAACGGCTATCACA TCACGTTCTC chrXVI:302525-302981 - 5 5.38e-04 TACAAGAAGT TCGGTGCCGTGATTATATGC TTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTARAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1150683-1151173 5.6e-11 37_[-2]_43 chrXIII:259001-259452 1.3e-10 37_[-2]_43 chrXII:167755-168275 1.3e-10 34_[-2]_46 chrX:523872-524355 1.3e-10 4_[-2]_76 chrIV:1305413-1305867 1.3e-10 45_[+2]_35 chrXVI:689345-689853 3.8e-10 21_[+2]_59 chrV:288166-288782 3.8e-10 74_[-2]_6 chrIII:227734-228231 3.8e-10 15_[+2]_65 chrXIII:320985-321451 1.2e-09 25_[-2]_55 chrVII:774150-774647 1.2e-09 6_[+2]_74 chrVII:115269-115717 2.8e-09 50_[+2]_30 chrIV:359362-359886 2.8e-09 8_[+2]_72 chrXIV:602068-602572 5e-09 47_[+2]_33 chrVII:738752-739598 5e-09 2_[+2]_78 chrIX:183297-183709 5e-09 34_[-2]_46 chrII:197177-197842 5e-09 40_[+2]_40 chrXII:605236-605639 6e-09 19_[-2]_61 chrIV:884249-884575 6e-09 4_[+2]_76 chrXII:962813-963276 8.5e-09 35_[-2]_45 chrXI:84009-84439 8.5e-09 39_[+2]_41 chrX:424287-424714 8.5e-09 39_[-2]_41 chrIV:519652-519908 8.5e-09 18_[+2]_62 chrXIV:104579-105102 1.7e-08 20_[+2]_60 chrIX:325398-326066 1.7e-08 71_[+2]_9 chrXIII:480400-481031 2.3e-08 2_[-2]_78 chrVII:122006-122562 2.3e-08 40_[+2]_40 chrVI:226430-227112 2.3e-08 13_[-2]_67 chrV:435635-435940 2.3e-08 61_[-2]_19 chrIX:300003-300522 2.3e-08 62_[-2]_18 chrIV:1351907-1353082 2.3e-08 68_[-2]_12 chrIV:1201515-1202008 2.3e-08 44_[+2]_36 chrXVI:560015-560464 2.7e-08 74_[-2]_6 chrXIV:374629-375100 2.7e-08 60_[+2]_20 chrXIII:352045-352625 2.7e-08 [+2]_80 chrVIII:358287-358786 2.7e-08 57_[-2]_23 chrVIII:237750-238085 2.7e-08 46_[-2]_34 chrVII:440500-441031 2.7e-08 66_[-2]_14 chrIV:1095128-1095715 2.7e-08 64_[-2]_16 chrIV:619679-620307 2.7e-08 72_[-2]_8 chrII:36230-36587 2.7e-08 45_[+2]_35 chrXI:74413-74821 1.1e-07 62_[+2]_18 chrVII:730957-731401 1.1e-07 13_[+2]_67 chrVI:137284-137747 1.1e-07 68_[-2]_12 chrIII:127505-127881 1.1e-07 78_[+2]_2 chrXVI:860144-860680 1.6e-07 22_[+2]_58 chrXVI:572032-572518 1.6e-07 49_[+2]_31 chrXV:226427-226862 1.6e-07 61_[-2]_19 chrX:396525-397035 1.6e-07 40_[-2]_40 chrVII:930790-931159 1.6e-07 73_[-2]_7 chrVII:700194-701162 4.6e-07 52_[+2]_28 chrXIII:195940-196308 5.1e-07 70_[-2]_10 chrXII:92414-92722 5.1e-07 35_[+2]_45 chrI:138930-139351 5.1e-07 67_[+2]_13 chrXIII:504598-505216 5.7e-07 43_[+2]_37 chrXIII:420359-420866 5.7e-07 73_[-2]_7 chrXIII:372179-372752 5.7e-07 77_[-2]_3 chrXI:379471-379918 5.7e-07 41_[+2]_39 chrV:438495-438935 5.7e-07 40_[+2]_40 chrXIII:837729-838181 1.5e-06 28_[+2]_52 chrX:542754-543251 1.5e-06 66_[-2]_14 chrVI:167207-167654 1.5e-06 62_[+2]_18 chrV:78055-79414 2.1e-06 35_[+2]_45 chrXV:110860-111212 3e-06 21_[-2]_59 chrXV:663482-664349 3.3e-06 2_[-2]_78 chrXVI:744071-744534 3.6e-06 37_[+2]_43 chrXIII:808050-808529 3.6e-06 52_[-2]_28 chrXII:426873-427428 3.6e-06 37_[+2]_43 chrX:204518-205006 3.6e-06 28_[+2]_52 chrVII:1004021-1004407 3.6e-06 57_[+2]_23 chrVII:661510-661958 3.6e-06 70_[+2]_10 chrVII:544414-544870 3.6e-06 30_[-2]_50 chrVII:531382-531798 3.6e-06 75_[+2]_5 chrV:130978-131369 3.6e-06 4_[-2]_76 chrIX:324144-324601 3.6e-06 26_[-2]_54 chrIV:568707-569230 3.6e-06 51_[+2]_29 chrIII:168108-168557 3.6e-06 64_[-2]_16 chrII:405673-406221 3.6e-06 68_[+2]_12 chrII:350593-351044 3.6e-06 64_[+2]_16 chrII:326475-327172 4.2e-06 66_[-2]_14 chrXI:382197-382480 6.7e-06 68_[-2]_12 chrXI:302654-303240 7.2e-06 26_[+2]_54 chrVII:287139-287742 7.2e-06 39_[-2]_41 chrXVI:775640-776052 8.4e-06 14_[-2]_66 chrXVI:435617-436208 8.4e-06 76_[-2]_4 chrIII:123398-123791 1e-05 78_[-2]_2 chrII:167869-168615 1.7e-05 12_[-2]_68 chrXIII:747694-748124 1.9e-05 78_[-2]_2 chrXIII:131594-132104 1.9e-05 71_[-2]_9 chrXVI:622221-622849 4.4e-05 24_[+2]_56 chrXII:673573-674443 4.4e-05 66_[+2]_14 chrVII:185186-186435 7.4e-05 9_[-2]_71 chrXI:312878-314002 8.8e-05 56_[-2]_24 chrXIII:731929-732644 0.00012 38_[+2]_42 chrIV:1016940-1017508 0.00042 78_[-2]_2 chrXVI:302525-302981 0.00054 4_[-2]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTARAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DTRGYBYAGTGGKTARAGSS width=20 seqs=95 chrIV:1150683-1151173 ( 38) GTGGCCGAGTGGTTAAGGCG 1 chrXIII:259001-259452 ( 38) TTGGCCGAGTGGTTAAGGCG 1 chrXII:167755-168275 ( 35) TTGGCCGAGTGGTTAAGGCG 1 chrX:523872-524355 ( 5) TTGGCCGAGTGGTTAAGGCG 1 chrIV:1305413-1305867 ( 46) TTGGCCGAGTGGTTAAGGCG 1 chrXVI:689345-689853 ( 22) ATGGCCGAGTGGTTAAGGCG 1 chrV:288166-288782 ( 75) ATGGCCGAGTGGTTAAGGCG 1 chrIII:227734-228231 ( 16) ATGGCCGAGTGGTTAAGGCG 1 chrXIII:320985-321451 ( 26) GTGGCGTAGTCGGTAGCGCG 1 chrVII:774150-774647 ( 7) GTGGCGTAGTCGGTAGCGCG 1 chrVII:115269-115717 ( 51) TTAGCTCAGTTGGTAGAGCG 1 chrIV:359362-359886 ( 9) TTAGCTCAGTTGGTAGAGCG 1 chrXIV:602068-602572 ( 48) TTGGCCCAGTTGGTTAAGGC 1 chrVII:738752-739598 ( 3) TTGGCCCAGTTGGTTAAGGC 1 chrIX:183297-183709 ( 35) TTGGCCCAGTTGGTTAAGGC 1 chrII:197177-197842 ( 41) TTGGCCCAGTTGGTTAAGGC 1 chrXII:605236-605639 ( 20) GTAGCTCAGTGGTTAGAGCT 1 chrIV:884249-884575 ( 5) GTAGCTCAGTGGTTAGAGCT 1 chrXII:962813-963276 ( 36) TTGGCCGAGTGGTCTAAGGC 1 chrXI:84009-84439 ( 40) TTGGCCGAGTGGTCTAAGGC 1 chrX:424287-424714 ( 40) TTGGCCGAGTGGTCTAAGGC 1 chrIV:519652-519908 ( 19) TTGGCCGAGTGGTCTAAGGC 1 chrXIV:104579-105102 ( 21) ATGGCCAAGTTGGTAAGGCG 1 chrIX:325398-326066 ( 72) ATGGCCAAGTTGGTAAGGCG 1 chrXIII:480400-481031 ( 3) TTGGCGCAATCGGTAGCGCG 1 chrVII:122006-122562 ( 41) TTGGCGCAATCGGTAGCGCG 1 chrVI:226430-227112 ( 14) TTGGCGCAATCGGTAGCGCG 1 chrV:435635-435940 ( 62) TTGGCGCAATCGGTAGCGCG 1 chrIX:300003-300522 ( 63) TTGGCGCAATCGGTAGCGCG 1 chrIV:1351907-1353082 ( 69) TTGGCGCAATCGGTAGCGCG 1 chrIV:1201515-1202008 ( 45) TTGGCGCAATCGGTAGCGCG 1 chrXVI:560015-560464 ( 75) TTAGCTCAGTTGGGAGAGCG 1 chrXIV:374629-375100 ( 61) TTAGCTCAGTTGGGAGAGCG 1 chrXIII:352045-352625 ( 1) TTAGCTCAGTTGGGAGAGCG 1 chrVIII:358287-358786 ( 58) TTAGCTCAGTTGGGAGAGCG 1 chrVIII:237750-238085 ( 47) TTAGCTCAGTTGGGAGAGCG 1 chrVII:440500-441031 ( 67) TTAGCTCAGTTGGGAGAGCG 1 chrIV:1095128-1095715 ( 65) TTAGCTCAGTTGGGAGAGCG 1 chrIV:619679-620307 ( 73) GTGGCCCAATGGTCACGGCG 1 chrII:36230-36587 ( 46) TTAGCTCAGTTGGGAGAGCG 1 chrXI:74413-74821 ( 63) ATGGCCAAGTTGGTTAAGGC 1 chrVII:730957-731401 ( 14) ATGGCCAAGTTGGTTAAGGC 1 chrVI:137284-137747 ( 69) ATGGCCAAGTTGGTTAAGGC 1 chrIII:127505-127881 ( 79) ATGGCCAAGTTGGTTAAGGC 1 chrXVI:860144-860680 ( 23) GTGGTTTAGTGGTAAAATCC 1 chrXVI:572032-572518 ( 50) GTGGTTTAGTGGTAAAATCC 1 chrXV:226427-226862 ( 62) GTGGTTTAGTGGTAAAATCC 1 chrX:396525-397035 ( 41) GTGGTTTAGTGGTAAAATCC 1 chrVII:930790-931159 ( 74) GTGGTTTAGTGGTAAAATCC 1 chrVII:700194-701162 ( 53) CTGGCCGAGTGGTCTAAGGC 1 chrXIII:195940-196308 ( 71) GTGGTCTAGTGGTATGATTC 1 chrXII:92414-92722 ( 36) GTGGTCTAGTGGTATGATTC 1 chrI:138930-139351 ( 68) GTGGTCTAGTGGTATGATTC 1 chrXIII:504598-505216 ( 44) TTGGCCGAGCGGTCTAAGGC 1 chrXIII:420359-420866 ( 74) GTGGTCTAGTCGGTTATGGC 1 chrXIII:372179-372752 ( 78) GTGGTCTAGTCGGTTATGGC 1 chrXI:379471-379918 ( 42) GTGGTCTAGTCGGTTATGGC 1 chrV:438495-438935 ( 41) GTGGTCTAGTCGGTTATGGC 1 chrXIII:837729-838181 ( 29) GTAGCCAAGTTGGTTTAAGG 1 chrX:542754-543251 ( 67) GTAGCCAAGTTGGTTTAAGG 1 chrVI:167207-167654 ( 63) GTAGCCAAGTTGGTTTAAGG 1 chrV:78055-79414 ( 36) ATGGTGTCGTCGGTAGAACC 1 chrXV:110860-111212 ( 22) TTAGTGTAGTGGTTATCATC 1 chrXV:663482-664349 ( 3) GTGGTTTCGTGGTCTAGTCG 1 chrXVI:744071-744534 ( 38) TTAGCTTAGTGGTAGAGCGT 1 chrXIII:808050-808529 ( 53) ATAGTGTAGTGGTTATCACT 1 chrXII:426873-427428 ( 38) ATAGTTTAATGGTCAGAATG 1 chrX:204518-205006 ( 29) ATAGTTTAATGGTCAGAATG 1 chrVII:1004021-1004407 ( 58) TTAGCTTAGTGGTAGAGCGT 1 chrVII:661510-661958 ( 71) TTAGCTTAGTGGTAGAGCGT 1 chrVII:544414-544870 ( 31) ATAGTTTAATGGTCAGAATG 1 chrVII:531382-531798 ( 76) ATAGTTTAATGGTCAGAATG 1 chrV:130978-131369 ( 5) ATAGTGTAGTGGTTATCACT 1 chrIX:324144-324601 ( 27) ATAGTTTAATGGTCAGAATG 1 chrIV:568707-569230 ( 52) ATAGTTTAATGGTCAGAATG 1 chrIII:168108-168557 ( 65) ATAGTGTAGTGGTTATCACT 1 chrII:405673-406221 ( 69) ATAGTTTAATGGTCAGAATG 1 chrII:350593-351044 ( 65) ATAGTGTAGTGGTTATCACT 1 chrII:326475-327172 ( 67) ATGGTCCAGTGGTTCAAGAC 1 chrXI:382197-382480 ( 69) GTGGAGGAATGGGTGGAACG 1 chrXI:302654-303240 ( 27) GTGGCTCAATGGTAGAGCTT 1 chrVII:287139-287742 ( 40) GTGGCTCAATGGTAGAGCTT 1 chrXVI:775640-776052 ( 15) ATGGCGCAGTGGTAGCGCAG 1 chrXVI:435617-436208 ( 77) ATGGCGCAGTGGTAGCGCAG 1 chrIII:123398-123791 ( 79) GTGGTCTAGAGGTATGATTC 1 chrII:167869-168615 ( 13) GTAGGCGAGAGGTTAGACGG 1 chrXIII:747694-748124 ( 79) GTGGCGTAATGGCAACGCGT 1 chrXIII:131594-132104 ( 72) GTGGCGTAATGGCAACGCGT 1 chrXVI:622221-622849 ( 25) TTTCCGCAGTTGGCAGGTCG 1 chrXII:673573-674443 ( 67) GTGGTGTTGTGGTTTTGCTT 1 chrVII:185186-186435 ( 10) ATAGCCTTGTTGGCGCAATC 1 chrXI:312878-314002 ( 57) TTAGTATAGTGGTTAGTACA 1 chrXIII:731929-732644 ( 39) GTTTCCGAGTTGGAAGCCTG 1 chrIV:1016940-1017508 ( 79) GTAGTGTAACGGCTATCACA 1 chrXVI:302525-302981 ( 5) TCGGTGCCGTGATTATATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTARAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 39366 bayes= 6.57792 E= 1.2e-153 -24 -417 83 33 -1321 -417 -1321 167 21 -1321 171 -388 -1321 -417 237 -488 -488 176 -417 12 -488 115 41 3 -171 78 -8 37 161 -259 -1321 -388 -49 -1321 204 -1321 -388 -317 -1321 163 -1321 -37 161 -18 -488 -1321 238 -1321 -1321 -259 119 79 -63 -8 -117 79 98 -417 -100 -13 44 -159 108 -142 79 -17 35 -256 -56 -59 150 -130 -329 138 63 -79 -388 83 138 -107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTARAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 95 E= 1.2e-153 0.263158 0.010526 0.336842 0.389474 0.000000 0.010526 0.000000 0.989474 0.357895 0.000000 0.621053 0.021053 0.000000 0.010526 0.978947 0.010526 0.010526 0.642105 0.010526 0.336842 0.010526 0.421053 0.252632 0.315789 0.094737 0.326316 0.178947 0.400000 0.947368 0.031579 0.000000 0.021053 0.221053 0.000000 0.778947 0.000000 0.021053 0.021053 0.000000 0.957895 0.000000 0.147368 0.578947 0.273684 0.010526 0.000000 0.989474 0.000000 0.000000 0.031579 0.431579 0.536842 0.200000 0.178947 0.084211 0.536842 0.610526 0.010526 0.094737 0.284211 0.421053 0.063158 0.400000 0.115789 0.536842 0.168421 0.242105 0.052632 0.210526 0.126316 0.536842 0.126316 0.031579 0.494737 0.294737 0.178947 0.021053 0.336842 0.494737 0.147368 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTARAGSS MEME-2 regular expression -------------------------------------------------------------------------------- [TGA]T[GA]G[CT][CTG][TC]A[GA]T[GT]G[TG][TA][AT][AG][AG][GA][CG][GC] -------------------------------------------------------------------------------- Time 425.42 secs. ******************************************************************************** ******************************************************************************** MOTIF CACCCRTACAYCNYA MEME-3 width = 15 sites = 80 llr = 907 E-value = 1.9e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACCCRTACAYCNYA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 29:1:5:7:9:1326 pos.-specific C 8:7aa:3:a156241 probability G :1:::4:3::::222 matrix T ::3::17:::53332 bits 2.4 2.2 ** * 1.9 ** * 1.7 ** * Relative 1.4 * ** * Entropy 1.2 ***** ** (16.4 bits) 1.0 ***** **** 0.7 ************ 0.5 ************ 0.2 ************ ** 0.0 --------------- Multilevel CACCCATACACCTCA consensus T GCG TTAT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCNYA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXV:639186-639472 - 35 1.49e-09 ACTACTTTTA CACCCGTACACCACA CATACAACCG chrVII:371183-371529 + 50 4.09e-09 AAAATACCGG CACCCATGCACCTCA CACCGCCGCA chrX:545395-545759 - 27 5.48e-09 AAAAGACAGC CACCCATGCACCGCA CTCGCACGTG chrXI:614150-614437 + 61 7.09e-09 ATGACTGCAA CACCCGCACACCACA AGGTGAAGGG chrXII:5573-5809 + 26 1.58e-08 ATATACACCA CACCCACACACCACA CCCACACCAC chrXVI:279975-280250 + 53 4.16e-08 GAGAAGTCCG CATCCGTGCACCTCA CAATTCCGAA chrV:69106-69303 - 23 5.13e-08 GCCGAGCATG CACCCGTACCCCACA AAGCTTCGCT chrIV:1062808-1063109 - 46 5.13e-08 AAATAAATAG CACCCACACATCGCA TGATGGCAGG chrXII:710652-710840 + 38 6.29e-08 GCAGGAATCA CACCCACGCATCTCA TTTTGCGTTA chrVI:95418-95927 - 11 7.56e-08 ATCAGTCATG CACCCACACACCGGA TTGCGTATAG chrXIII:650695-651226 + 72 9.16e-08 GACTGTTTTA CACCCGTACATTTCA CAGTTTTTTT chrVII:10144-10510 + 53 1.10e-07 TTAAACAGTG CACCCGTGCATCATA CCTCATGCAA chrXII:1028167-1028584 + 74 1.30e-07 GACAAAATAT CACCCATGCACCAAA ATGTATGGGT chrIII:163437-163891 - 30 1.56e-07 TAAATTACCG CACCCACGCACCCAA CCGCGGCTGT chrII:181295-181688 + 55 2.16e-07 CTTTACAAAG CACCCATACATTACA TTGAATACAT chrXIV:783722-784318 - 79 2.52e-07 ACCCACA CACCCACACACACCA CACCCACACA chrV:85112-85470 + 60 2.52e-07 TGATATCATC CACCCATACCCCTCG ATGTATTCCG chrI:81895-82321 - 49 2.52e-07 ACTGTTGGTA CATCCGTGCACCTCC GCTAGATGAG chrV:270380-270688 + 4 2.92e-07 TAT CACCCATACATACCA CTAAATGTGT chrXV:901425-901734 - 8 3.90e-07 CGGGACTGTT CACCCGTACATTTTA CGTTTCC chrX:160026-160285 + 70 3.90e-07 ATGTGTGACA CACCCATACCCCATA ATGTTGCACG chrVIII:148989-149243 - 13 3.90e-07 CATACATTTT CACCCATGCACCATT GAATTATAAA chrXI:666491-666783 - 22 5.15e-07 ACCCACACCA CACCCACACACCCAC AACCCTAACA chrXV:968123-968464 - 23 6.70e-07 GAGCAGCGCA CGCCCACGCACCCCA CGCTTTTGAG chrX:703237-703676 - 42 7.60e-07 CGCGTGGAAG CACCCATGCATCCAC TATTTATTTT chrXV:79739-80161 - 45 8.59e-07 TCCATGTAAA CACCCGTACATATTA AATAAGTGAC chrVIII:505815-506226 - 28 8.59e-07 GACAATTATG CATCCATACATTTCA CCCAGACATT chrIX:254186-254568 - 28 8.59e-07 CGAGCTTCCG CACCCACACATTCTA ATTGCCGCGC chrXII:932069-932560 - 8 1.09e-06 ACATAGTATA CATCCGTACATCCGT ACATCCG chrXI:67791-68070 + 34 1.09e-06 CCCGTGCTGA AATCCGTGCACCGCA TCAAATTTTC chrVIII:125873-126331 + 51 1.09e-06 GACGTTAATG CATCCGTACACCTAC ATCTTTACAT chrXVI:575112-575461 + 65 1.22e-06 TTGCCTGAAG CACCCACACACAAGA ACAGAAATGT chrXVI:378652-379013 - 55 1.22e-06 TCAGAGAAAA CATCCGTACATTCGA GTTCTCATTG chrIII:58681-59093 + 35 1.22e-06 TGCGTGGGTA CATCCGTGCACCATT TCTGAAAAAT chrII:44970-45371 + 51 1.36e-06 GACAATCATG CATCCGTACATTCTA TGTATGTTTG chrIV:411231-411679 + 31 1.52e-06 ACAAATCAAA CACCCACACCCCGGG CACCCAAAGT chrXV:167960-168459 + 49 1.69e-06 TGTTTAAAGC CGCCCACACATCACA TTGAGAACGA chrXII:903373-903710 + 32 1.69e-06 AGAAGCATTG GACCCATGCACCACA TGCATTAGGA chrVII:726199-727049 + 14 1.69e-06 ATTAACTGTA CACCCATACCCTATA TACACCCATA chrXVI:135459-135834 - 27 1.87e-06 AGACTGCTAA AATCCGTGCACCCCG TAAAGTATGC chrXV:253812-254085 - 77 2.08e-06 AACTTTTTT AATCCGTACACCGCG CGTATAAATC chrII:592869-593281 - 57 2.08e-06 TCTTTTCTTG CATCCATACATCTTT GAACTCCATA chrXV:882178-882390 + 65 2.30e-06 CCTATAAAAA CACCTGTGCACCGCA TATTTCCATA chrIV:358000-358494 - 49 2.30e-06 GTGTACACAC CACCCATACATTATC TGACAAGGAA chrV:396165-396579 + 58 2.81e-06 CTGTTGTATA CATCCGTACACTTTT GTGAACCCAA chrIV:1300872-1301361 + 44 2.81e-06 TTCCTTCAAA CATCCGTGCACTGTG GATGTTTGGG chrIV:1355716-1356044 - 6 3.10e-06 GTTAAAATTA CACCCATACATTTAT AGTAT chrXIII:302848-303109 - 34 3.41e-06 CGCATATGGG CGCCCACACCCCACA CCCCTGGATT chrXII:370613-370949 - 52 3.41e-06 GCACTTCGCC CACCCATGAACCACA CGGTTAGTCC chrXI:618770-619279 - 34 3.41e-06 ATACTATTTC CATCCGTGCCTCTAA TAGATTTGTG chrXV:216274-216719 + 14 3.75e-06 AACATCCGAG CACCCGCGCCTTCCT CAACCCAGGC chrXVI:699647-700684 + 55 4.11e-06 CACAAGTGAT CCCCCACACACCATA GCTTCAAAAT chrXII:241641-242021 + 27 4.50e-06 TCCCTTTTTA CATCCGTACATATAA AATGTAAACC chrXI:108726-109097 + 61 5.37e-06 CACATTACAA CATCCGTACATTTAG TTGGCTCCAT chrVII:277020-277439 + 49 5.37e-06 ATTTTAGCTA GACCCATACACCCGC TCTATGGGAT chrVII:1000352-1000628 + 19 5.87e-06 ACTAGGATAG CACCCAAACACCTGC ATATTTGGAC chrXV:678233-679785 - 48 6.40e-06 TGGGACCATA CATCCGTACATATTG TGGACCCATT chrXI:382197-382480 + 18 6.40e-06 GCTGCTGTTG CATCCGGACATCACA CCCAACACAA chrXII:713143-713670 - 13 7.60e-06 CAGACTATCA CATCCGTACATATGT ATAAAAAAAT chrII:165104-165404 + 54 7.60e-06 TTACGAATCT AGCCCATACACCGCG TTAGAGCACT chrX:90035-90445 + 72 8.28e-06 TGAACATTCT CACCCATACATGGCC TTGTTTTTTT chrIV:1400976-1401903 + 45 8.28e-06 AATCATTTTC CACCCACACATATAT TACCCTTTTT chrXIII:224052-224468 - 2 9.00e-06 GAAACTGTAA AATCCGTACACACTA C chrXII:732006-732300 - 55 1.06e-05 AAGGGATTCG AACCCTTGCATCCGA AGATATCAGA chrXII:592317-592719 + 69 1.06e-05 AAGGGATTCG AACCCTTGCATCCGA AGATATCAGA chrX:617675-618285 - 57 1.06e-05 AAGGGATTCG AACCCTTGCATCCGA AGATATCAGA chrII:332257-332772 + 62 1.06e-05 TTCCTTGCTG CACCCATACAATTCT AAACCCAAAC chrXV:505026-505532 + 66 1.15e-05 ATTCATTTCA AACCCATACACAATG AACCTTATCA chrIV:217064-217784 + 46 1.15e-05 ATGGATTCAG CACCCAAACATTTGA ATTTTTTTTC chrXII:424173-424493 + 26 1.46e-05 TAAGTCGCTA CACACGTACATTGCT GTGGTGCACG chrX:651224-651621 + 75 1.98e-05 AATTATTCTT AACCCATACATATTT GTCTCAAGTT chrIV:321631-321970 + 50 1.98e-05 CATACCTTTA CCTCCGTACACCAAT CTTTATTTTT chrXIV:725517-726361 + 31 2.13e-05 ATTTCCTTAC CACACGTACATTGGG TGCTCTACTT chrXIII:296713-298840 + 86 2.13e-05 GGGCCTAGAA AACCCGCGCAACTGA chrXII:897629-898188 + 4 2.29e-05 CAA CACCTGTACCTCCAA AAAACCCATT chrV:354792-355343 - 5 2.46e-05 CTCCTAACCC CATACATACACTGTA TGAT chrVI:210419-211290 + 80 2.64e-05 TAAAATTTAG CACACGCACACTCAC ACATAC chrIX:99627-100067 - 28 2.83e-05 GCAATTAAAG CATCGGTACACCATG TAACACCAGT chrIX:248562-249017 - 36 3.98e-05 AACTACAATG CACCCACGACTCGCG GTGTAATGAT chrIV:434107-435090 + 72 3.98e-05 TTACATTATC AATCCTTGCATTTCA GCTTCCATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCNYA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639186-639472 1.5e-09 34_[-3]_51 chrVII:371183-371529 4.1e-09 49_[+3]_36 chrX:545395-545759 5.5e-09 26_[-3]_59 chrXI:614150-614437 7.1e-09 60_[+3]_25 chrXII:5573-5809 1.6e-08 25_[+3]_60 chrXVI:279975-280250 4.2e-08 52_[+3]_33 chrV:69106-69303 5.1e-08 22_[-3]_63 chrIV:1062808-1063109 5.1e-08 45_[-3]_40 chrXII:710652-710840 6.3e-08 37_[+3]_48 chrVI:95418-95927 7.6e-08 10_[-3]_75 chrXIII:650695-651226 9.2e-08 71_[+3]_14 chrVII:10144-10510 1.1e-07 52_[+3]_33 chrXII:1028167-1028584 1.3e-07 73_[+3]_12 chrIII:163437-163891 1.6e-07 29_[-3]_56 chrII:181295-181688 2.2e-07 54_[+3]_31 chrXIV:783722-784318 2.5e-07 78_[-3]_7 chrV:85112-85470 2.5e-07 59_[+3]_26 chrI:81895-82321 2.5e-07 48_[-3]_37 chrV:270380-270688 2.9e-07 3_[+3]_82 chrXV:901425-901734 3.9e-07 7_[-3]_78 chrX:160026-160285 3.9e-07 69_[+3]_16 chrVIII:148989-149243 3.9e-07 12_[-3]_73 chrXI:666491-666783 5.1e-07 21_[-3]_64 chrXV:968123-968464 6.7e-07 22_[-3]_63 chrX:703237-703676 7.6e-07 41_[-3]_44 chrXV:79739-80161 8.6e-07 44_[-3]_41 chrVIII:505815-506226 8.6e-07 27_[-3]_58 chrIX:254186-254568 8.6e-07 27_[-3]_58 chrXII:932069-932560 1.1e-06 7_[-3]_78 chrXI:67791-68070 1.1e-06 33_[+3]_52 chrVIII:125873-126331 1.1e-06 50_[+3]_35 chrXVI:575112-575461 1.2e-06 64_[+3]_21 chrXVI:378652-379013 1.2e-06 54_[-3]_31 chrIII:58681-59093 1.2e-06 34_[+3]_51 chrII:44970-45371 1.4e-06 50_[+3]_35 chrIV:411231-411679 1.5e-06 30_[+3]_55 chrXV:167960-168459 1.7e-06 48_[+3]_37 chrXII:903373-903710 1.7e-06 31_[+3]_54 chrVII:726199-727049 1.7e-06 13_[+3]_72 chrXVI:135459-135834 1.9e-06 26_[-3]_59 chrXV:253812-254085 2.1e-06 76_[-3]_9 chrII:592869-593281 2.1e-06 56_[-3]_29 chrXV:882178-882390 2.3e-06 64_[+3]_21 chrIV:358000-358494 2.3e-06 48_[-3]_37 chrV:396165-396579 2.8e-06 57_[+3]_28 chrIV:1300872-1301361 2.8e-06 43_[+3]_42 chrIV:1355716-1356044 3.1e-06 5_[-3]_80 chrXIII:302848-303109 3.4e-06 33_[-3]_52 chrXII:370613-370949 3.4e-06 51_[-3]_34 chrXI:618770-619279 3.4e-06 33_[-3]_52 chrXV:216274-216719 3.7e-06 13_[+3]_72 chrXVI:699647-700684 4.1e-06 54_[+3]_31 chrXII:241641-242021 4.5e-06 26_[+3]_59 chrXI:108726-109097 5.4e-06 60_[+3]_25 chrVII:277020-277439 5.4e-06 48_[+3]_37 chrVII:1000352-1000628 5.9e-06 18_[+3]_67 chrXV:678233-679785 6.4e-06 47_[-3]_38 chrXI:382197-382480 6.4e-06 17_[+3]_68 chrXII:713143-713670 7.6e-06 12_[-3]_73 chrII:165104-165404 7.6e-06 53_[+3]_32 chrX:90035-90445 8.3e-06 71_[+3]_14 chrIV:1400976-1401903 8.3e-06 44_[+3]_41 chrXIII:224052-224468 9e-06 1_[-3]_84 chrXII:732006-732300 1.1e-05 54_[-3]_31 chrXII:592317-592719 1.1e-05 68_[+3]_17 chrX:617675-618285 1.1e-05 56_[-3]_29 chrII:332257-332772 1.1e-05 61_[+3]_24 chrXV:505026-505532 1.2e-05 65_[+3]_20 chrIV:217064-217784 1.2e-05 45_[+3]_40 chrXII:424173-424493 1.5e-05 25_[+3]_60 chrX:651224-651621 2e-05 74_[+3]_11 chrIV:321631-321970 2e-05 49_[+3]_36 chrXIV:725517-726361 2.1e-05 30_[+3]_55 chrXIII:296713-298840 2.1e-05 85_[+3] chrXII:897629-898188 2.3e-05 3_[+3]_82 chrV:354792-355343 2.5e-05 4_[-3]_81 chrVI:210419-211290 2.6e-05 79_[+3]_6 chrIX:99627-100067 2.8e-05 27_[-3]_58 chrIX:248562-249017 4e-05 35_[-3]_50 chrIV:434107-435090 4e-05 71_[+3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCNYA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACCCRTACAYCNYA width=15 seqs=80 chrXV:639186-639472 ( 35) CACCCGTACACCACA 1 chrVII:371183-371529 ( 50) CACCCATGCACCTCA 1 chrX:545395-545759 ( 27) CACCCATGCACCGCA 1 chrXI:614150-614437 ( 61) CACCCGCACACCACA 1 chrXII:5573-5809 ( 26) CACCCACACACCACA 1 chrXVI:279975-280250 ( 53) CATCCGTGCACCTCA 1 chrV:69106-69303 ( 23) CACCCGTACCCCACA 1 chrIV:1062808-1063109 ( 46) CACCCACACATCGCA 1 chrXII:710652-710840 ( 38) CACCCACGCATCTCA 1 chrVI:95418-95927 ( 11) CACCCACACACCGGA 1 chrXIII:650695-651226 ( 72) CACCCGTACATTTCA 1 chrVII:10144-10510 ( 53) CACCCGTGCATCATA 1 chrXII:1028167-1028584 ( 74) CACCCATGCACCAAA 1 chrIII:163437-163891 ( 30) CACCCACGCACCCAA 1 chrII:181295-181688 ( 55) CACCCATACATTACA 1 chrXIV:783722-784318 ( 79) CACCCACACACACCA 1 chrV:85112-85470 ( 60) CACCCATACCCCTCG 1 chrI:81895-82321 ( 49) CATCCGTGCACCTCC 1 chrV:270380-270688 ( 4) CACCCATACATACCA 1 chrXV:901425-901734 ( 8) CACCCGTACATTTTA 1 chrX:160026-160285 ( 70) CACCCATACCCCATA 1 chrVIII:148989-149243 ( 13) CACCCATGCACCATT 1 chrXI:666491-666783 ( 22) CACCCACACACCCAC 1 chrXV:968123-968464 ( 23) CGCCCACGCACCCCA 1 chrX:703237-703676 ( 42) CACCCATGCATCCAC 1 chrXV:79739-80161 ( 45) CACCCGTACATATTA 1 chrVIII:505815-506226 ( 28) CATCCATACATTTCA 1 chrIX:254186-254568 ( 28) CACCCACACATTCTA 1 chrXII:932069-932560 ( 8) CATCCGTACATCCGT 1 chrXI:67791-68070 ( 34) AATCCGTGCACCGCA 1 chrVIII:125873-126331 ( 51) CATCCGTACACCTAC 1 chrXVI:575112-575461 ( 65) CACCCACACACAAGA 1 chrXVI:378652-379013 ( 55) CATCCGTACATTCGA 1 chrIII:58681-59093 ( 35) CATCCGTGCACCATT 1 chrII:44970-45371 ( 51) CATCCGTACATTCTA 1 chrIV:411231-411679 ( 31) CACCCACACCCCGGG 1 chrXV:167960-168459 ( 49) CGCCCACACATCACA 1 chrXII:903373-903710 ( 32) GACCCATGCACCACA 1 chrVII:726199-727049 ( 14) CACCCATACCCTATA 1 chrXVI:135459-135834 ( 27) AATCCGTGCACCCCG 1 chrXV:253812-254085 ( 77) AATCCGTACACCGCG 1 chrII:592869-593281 ( 57) CATCCATACATCTTT 1 chrXV:882178-882390 ( 65) CACCTGTGCACCGCA 1 chrIV:358000-358494 ( 49) CACCCATACATTATC 1 chrV:396165-396579 ( 58) CATCCGTACACTTTT 1 chrIV:1300872-1301361 ( 44) CATCCGTGCACTGTG 1 chrIV:1355716-1356044 ( 6) CACCCATACATTTAT 1 chrXIII:302848-303109 ( 34) CGCCCACACCCCACA 1 chrXII:370613-370949 ( 52) CACCCATGAACCACA 1 chrXI:618770-619279 ( 34) CATCCGTGCCTCTAA 1 chrXV:216274-216719 ( 14) CACCCGCGCCTTCCT 1 chrXVI:699647-700684 ( 55) CCCCCACACACCATA 1 chrXII:241641-242021 ( 27) CATCCGTACATATAA 1 chrXI:108726-109097 ( 61) CATCCGTACATTTAG 1 chrVII:277020-277439 ( 49) GACCCATACACCCGC 1 chrVII:1000352-1000628 ( 19) CACCCAAACACCTGC 1 chrXV:678233-679785 ( 48) CATCCGTACATATTG 1 chrXI:382197-382480 ( 18) CATCCGGACATCACA 1 chrXII:713143-713670 ( 13) CATCCGTACATATGT 1 chrII:165104-165404 ( 54) AGCCCATACACCGCG 1 chrX:90035-90445 ( 72) CACCCATACATGGCC 1 chrIV:1400976-1401903 ( 45) CACCCACACATATAT 1 chrXIII:224052-224468 ( 2) AATCCGTACACACTA 1 chrXII:732006-732300 ( 55) AACCCTTGCATCCGA 1 chrXII:592317-592719 ( 69) AACCCTTGCATCCGA 1 chrX:617675-618285 ( 57) AACCCTTGCATCCGA 1 chrII:332257-332772 ( 62) CACCCATACAATTCT 1 chrXV:505026-505532 ( 66) AACCCATACACAATG 1 chrIV:217064-217784 ( 46) CACCCAAACATTTGA 1 chrXII:424173-424493 ( 26) CACACGTACATTGCT 1 chrX:651224-651621 ( 75) AACCCATACATATTT 1 chrIV:321631-321970 ( 50) CCTCCGTACACCAAT 1 chrXIV:725517-726361 ( 31) CACACGTACATTGGG 1 chrXIII:296713-298840 ( 86) AACCCGCGCAACTGA 1 chrXII:897629-898188 ( 4) CACCTGTACCTCCAA 1 chrV:354792-355343 ( 5) CATACATACACTGTA 1 chrVI:210419-211290 ( 80) CACACGCACACTCAC 1 chrIX:99627-100067 ( 28) CATCGGTACACCATG 1 chrIX:248562-249017 ( 36) CACCCACGACTCGCG 1 chrIV:434107-435090 ( 72) AATCCTTGCATTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCNYA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 41796 bayes= 9.97113 E= 1.9e-082 -105 212 -292 -1297 158 -292 -192 -1297 -1297 186 -1297 1 -263 232 -1297 -1297 -1297 234 -392 -363 72 -1297 120 -263 -363 40 -392 120 112 -1297 78 -1297 -363 236 -1297 -1297 150 -60 -1297 -1297 -363 143 -1297 58 -117 163 -392 -24 -17 32 -12 1 -93 112 -12 -31 89 -75 -34 -93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCNYA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 80 E= 1.9e-082 0.150000 0.825000 0.025000 0.000000 0.925000 0.025000 0.050000 0.000000 0.000000 0.687500 0.000000 0.312500 0.050000 0.950000 0.000000 0.000000 0.000000 0.962500 0.012500 0.025000 0.512500 0.000000 0.437500 0.050000 0.025000 0.250000 0.012500 0.712500 0.675000 0.000000 0.325000 0.000000 0.025000 0.975000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.025000 0.512500 0.000000 0.462500 0.137500 0.587500 0.012500 0.262500 0.275000 0.237500 0.175000 0.312500 0.162500 0.412500 0.175000 0.250000 0.575000 0.112500 0.150000 0.162500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCNYA MEME-3 regular expression -------------------------------------------------------------------------------- CA[CT]CC[AG][TC][AG]CA[CT][CT][TAC][CT]A -------------------------------------------------------------------------------- Time 619.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:81895-82321 4.17e-04 48_[-3(2.52e-07)]_37 chrI:138930-139351 4.12e-04 67_[+2(5.10e-07)]_13 chrI:166171-166647 9.45e-01 100 chrII:9455-9904 1.85e-04 7_[-1(4.99e-08)]_63 chrII:36230-36587 1.85e-04 45_[+2(2.71e-08)]_35 chrII:44970-45371 3.49e-03 50_[+3(1.36e-06)]_35 chrII:60773-61251 2.47e-01 100 chrII:89635-90340 3.77e-02 54_[-1(4.68e-05)]_16 chrII:165104-165404 7.16e-03 53_[+3(7.60e-06)]_32 chrII:167869-168615 4.35e-02 12_[-2(1.70e-05)]_68 chrII:181295-181688 1.32e-03 54_[+3(2.16e-07)]_31 chrII:197177-197842 4.75e-05 40_[+2(4.95e-09)]_40 chrII:226971-227345 2.87e-01 100 chrII:255098-255720 4.38e-01 100 chrII:266189-266733 2.36e-05 5_[+1(1.79e-09)]_65 chrII:326475-327172 1.44e-10 22_[-1(3.13e-11)]_14_[-2(4.20e-06)]_\ 14 chrII:332257-332772 1.41e-02 61_[+3(1.06e-05)]_24 chrII:347383-347945 1.85e-04 42_[-1(4.99e-08)]_28 chrII:350593-351044 1.91e-02 64_[+2(3.57e-06)]_16 chrII:405673-406221 2.81e-11 18_[+1(1.61e-12)]_20_[+2(3.57e-06)]_\ 12 chrII:415485-416115 7.98e-01 100 chrII:477029-477755 7.30e-01 100 chrII:592869-593281 1.12e-02 39_[-3(4.54e-05)]_2_[-3(2.08e-06)]_\ 29 chrII:604045-607111 4.32e-01 100 chrII:644949-645398 3.04e-02 100 chrIII:88-1238 8.91e-02 100 chrIII:11084-11558 7.62e-01 100 chrIII:58681-59093 1.26e-03 34_[+3(1.22e-06)]_51 chrIII:82461-82650 1.38e-01 100 chrIII:90778-91100 2.36e-01 100 chrIII:123398-123791 3.39e-15 36_[-1(1.88e-16)]_12_[-2(1.05e-05)]_\ 2 chrIII:127505-127881 8.80e-04 78_[+2(1.11e-07)]_2 chrIII:137779-138992 1.15e-01 100 chrIII:142354-143000 9.99e-01 100 chrIII:149719-150172 2.55e-05 62_[+1(4.66e-08)]_8 chrIII:150983-151568 8.79e-08 62_[-1(1.47e-11)]_8 chrIII:163437-163891 9.78e-05 29_[-3(1.56e-07)]_15_[-3(4.84e-05)]_\ 26 chrIII:168108-168557 1.60e-10 22_[-1(7.22e-11)]_12_[-2(3.57e-06)]_\ 16 chrIII:178132-178696 2.91e-01 100 chrIII:227734-228231 3.08e-06 15_[+2(3.79e-10)]_65 chrIII:295333-295952 8.96e-01 100 chrIII:308615-308984 3.83e-02 56_[-1(6.42e-05)]_14 chrIII:316235-316591 1.19e-02 56_[+2(1.21e-05)]_24 chrIV:45219-46124 8.19e-01 100 chrIV:83325-84170 7.25e-01 100 chrIV:117151-118091 8.67e-01 100 chrIV:130082-130998 9.51e-01 100 chrIV:217064-217784 2.71e-02 45_[+3(1.15e-05)]_40 chrIV:221641-222528 6.42e-01 100 chrIV:229165-230435 8.26e-01 100 chrIV:307993-308693 3.25e-01 100 chrIV:321631-321970 6.58e-02 49_[+3(1.98e-05)]_11_[+3(5.49e-05)]_\ 10 chrIV:340958-341688 6.59e-01 100 chrIV:358000-358494 1.02e-02 48_[-3(2.30e-06)]_37 chrIV:359362-359886 5.21e-13 8_[+2(2.77e-09)]_36_[+1(1.14e-10)]_\ 6 chrIV:410029-410460 9.33e-02 100 chrIV:410630-410799 9.61e-01 100 chrIV:411231-411679 3.02e-05 30_[+3(1.52e-06)]_13_[+3(1.70e-05)]_\ 27 chrIV:434107-435090 3.48e-02 71_[+3(3.98e-05)]_14 chrIV:437540-438232 6.43e-01 100 chrIV:488466-488993 6.42e-01 100 chrIV:490601-491262 3.69e-01 100 chrIV:519652-519908 6.80e-10 18_[+2(8.55e-09)]_28_[-1(4.99e-08)]_\ 4 chrIV:520698-521439 3.62e-01 100 chrIV:538902-539466 5.11e-01 100 chrIV:568707-569230 2.81e-11 1_[+1(1.61e-12)]_20_[+2(3.57e-06)]_\ 29 chrIV:578689-580415 6.44e-01 100 chrIV:601365-601738 7.15e-01 100 chrIV:619679-620307 1.31e-11 29_[-1(7.22e-11)]_13_[-2(2.71e-08)]_\ 8 chrIV:667687-668602 5.18e-01 100 chrIV:802588-802842 6.04e-07 69_[-1(7.22e-11)]_1 chrIV:835839-837383 7.52e-01 100 chrIV:884249-884575 1.25e-05 4_[+2(5.96e-09)]_76 chrIV:945781-946637 3.85e-01 100 chrIV:992691-993225 8.93e-01 100 chrIV:1013437-1014000 9.90e-01 100 chrIV:1016940-1017508 3.57e-09 36_[-1(1.47e-11)]_34 chrIV:1062808-1063109 5.42e-04 45_[-3(5.13e-08)]_40 chrIV:1075086-1075768 2.31e-01 100 chrIV:1095128-1095715 1.14e-11 2_[-1(1.59e-10)]_32_[-2(2.71e-08)]_\ 16 chrIV:1150683-1151173 4.91e-07 37_[-2(5.64e-11)]_43 chrIV:1175601-1176579 9.48e-01 100 chrIV:1201515-1202008 6.69e-05 44_[+2(2.32e-08)]_36 chrIV:1300872-1301361 1.11e-02 43_[+3(2.81e-06)]_42 chrIV:1305413-1305867 6.27e-07 45_[+2(1.34e-10)]_35 chrIV:1351907-1353082 1.11e-12 25_[-1(1.47e-11)]_13_[-2(2.32e-08)]_\ 12 chrIV:1355716-1356044 3.53e-03 5_[-3(3.10e-06)]_9_[-3(3.75e-06)]_\ 56 chrIV:1359421-1360832 1.80e-01 100 chrIV:1400976-1401903 2.10e-02 44_[+3(8.28e-06)]_41 chrIV:1450782-1451668 9.92e-01 100 chrIV:1461344-1461848 8.41e-01 100 chrIX:67622-68949 9.44e-01 100 chrIX:99627-100067 4.54e-02 27_[-3(2.83e-05)]_58 chrIX:174863-175535 9.16e-01 100 chrIX:183297-183709 8.77e-05 34_[-2(4.95e-09)]_46 chrIX:197322-198160 5.26e-01 100 chrIX:210667-210991 6.28e-01 100 chrIX:211180-211692 7.92e-01 100 chrIX:248562-249017 5.67e-02 35_[-3(3.98e-05)]_50 chrIX:254186-254568 2.95e-03 27_[-3(8.59e-07)]_58 chrIX:257362-258147 3.39e-01 100 chrIX:300003-300522 1.11e-12 19_[-1(1.47e-11)]_13_[-2(2.32e-08)]_\ 18 chrIX:315385-317635 6.94e-01 100 chrIX:324144-324601 1.26e-02 26_[-2(3.57e-06)]_54 chrIX:325398-326066 1.88e-04 71_[+2(1.68e-08)]_9 chrIX:336087-336629 1.82e-04 44_[-1(3.06e-08)]_26 chrIX:370255-370597 1.03e-01 100 chrV:6181-6774 1.84e-01 100 chrV:53497-54258 9.06e-01 100 chrV:61136-62131 4.11e-01 100 chrV:67318-68828 6.96e-01 100 chrV:69106-69303 4.95e-05 22_[-3(5.13e-08)]_63 chrV:78055-79414 3.34e-04 35_[+2(2.15e-06)]_45 chrV:85112-85470 3.87e-05 30_[+3(4.54e-05)]_14_[+3(2.52e-07)]_\ 26 chrV:86426-87036 4.12e-01 100 chrV:99897-100280 5.73e-01 100 chrV:117411-118299 2.79e-01 100 chrV:130978-131369 1.94e-02 4_[-2(3.57e-06)]_76 chrV:135194-136137 6.65e-01 100 chrV:138467-140916 4.14e-01 100 chrV:176898-177451 1.32e-06 12_[+1(8.11e-11)]_58 chrV:214537-214970 4.77e-01 100 chrV:249794-250602 2.14e-01 100 chrV:266448-268124 5.36e-01 100 chrV:270380-270688 2.64e-03 3_[+3(2.92e-07)]_24_[+3(3.98e-05)]_\ 43 chrV:288166-288782 4.26e-07 74_[-2(3.79e-10)]_6 chrV:305778-306424 2.86e-01 100 chrV:311742-312278 8.02e-08 66_[-1(1.29e-11)]_4 chrV:354792-355343 1.97e-02 4_[-3(2.46e-05)]_81 chrV:362129-362489 2.04e-01 100 chrV:396165-396579 7.62e-03 57_[+3(2.81e-06)]_3_[+3(9.95e-05)]_\ 10 chrV:422840-424273 9.92e-01 100 chrV:431029-431920 9.09e-01 100 chrV:434396-435128 9.22e-01 100 chrV:435635-435940 1.11e-12 18_[-1(1.47e-11)]_13_[-2(2.32e-08)]_\ 19 chrV:438495-438935 2.47e-03 40_[+2(5.66e-07)]_40 chrV:441773-442676 2.38e-01 100 chrV:443075-443342 2.18e-07 47_[-1(1.29e-11)]_23 chrV:469059-469708 7.31e-01 100 chrV:469895-470237 8.60e-01 100 chrV:486779-487634 9.02e-02 100 chrV:551013-551770 6.64e-01 100 chrVI:4518-4762 7.88e-01 100 chrVI:64158-65377 3.65e-01 100 chrVI:95418-95927 4.68e-05 10_[-3(7.56e-08)]_75 chrVI:101370-101797 9.99e-01 100 chrVI:137284-137747 1.07e-09 24_[-1(3.06e-09)]_14_[-2(1.11e-07)]_\ 12 chrVI:157897-158212 5.09e-01 100 chrVI:161988-163962 8.03e-01 100 chrVI:167207-167654 7.21e-03 62_[+2(1.50e-06)]_18 chrVI:180634-181282 1.37e-07 69_[-1(5.79e-12)]_1 chrVI:191145-191760 7.56e-01 100 chrVI:210419-211290 1.83e-02 79_[+3(2.64e-05)]_6 chrVI:221013-222383 4.26e-01 100 chrVI:223266-224164 1.28e-01 100 chrVI:226430-227112 4.28e-05 13_[-2(2.32e-08)]_67 chrVII:763-2072 7.66e-01 100 chrVII:10144-10510 6.76e-04 52_[+3(1.10e-07)]_33 chrVII:110271-110786 9.52e-01 100 chrVII:115269-115717 3.07e-05 50_[+2(2.77e-09)]_30 chrVII:122006-122562 6.69e-05 40_[+2(2.32e-08)]_40 chrVII:148103-149586 8.96e-01 100 chrVII:185186-186435 1.90e-04 [-2(2.32e-08)]_80 chrVII:186648-186899 3.94e-01 100 chrVII:205090-205786 6.19e-01 100 chrVII:254145-254697 5.31e-01 100 chrVII:277020-277439 7.05e-03 48_[+3(5.37e-06)]_37 chrVII:286695-286923 4.59e-01 100 chrVII:287139-287742 5.49e-03 39_[-2(7.24e-06)]_41 chrVII:310445-312230 9.82e-01 100 chrVII:319225-320133 5.82e-01 100 chrVII:328388-329297 9.11e-01 100 chrVII:364907-366714 9.82e-01 100 chrVII:371183-371529 4.83e-06 49_[+3(4.09e-09)]_36 chrVII:401422-401618 1.34e-06 60_[-1(8.11e-11)]_10 chrVII:405464-406145 4.04e-01 100 chrVII:411902-412588 7.70e-01 100 chrVII:422883-423493 2.36e-01 100 chrVII:438556-439866 8.95e-01 100 chrVII:440500-441031 5.93e-11 4_[-1(9.23e-10)]_32_[-2(2.71e-08)]_\ 14 chrVII:531382-531798 3.06e-03 75_[+2(3.57e-06)]_5 chrVII:533917-535200 8.19e-01 100 chrVII:541710-542149 9.57e-07 8_[+1(8.11e-11)]_62 chrVII:544414-544870 1.26e-02 30_[-2(3.57e-06)]_50 chrVII:555112-556659 7.36e-01 100 chrVII:561464-561706 9.54e-01 100 chrVII:648829-649350 3.58e-01 100 chrVII:661510-661958 1.38e-02 70_[+2(3.57e-06)]_10 chrVII:700194-701162 1.59e-04 52_[+2(4.58e-07)]_28 chrVII:706915-707267 3.70e-05 70_[-1(4.34e-09)] chrVII:726199-727049 1.19e-02 13_[+3(1.69e-06)]_2_[+3(4.92e-06)]_\ 55 chrVII:730957-731401 1.07e-09 13_[+2(1.11e-07)]_14_[+1(3.06e-09)]_\ 23 chrVII:736192-736659 8.55e-09 2_[+1(1.61e-12)]_68 chrVII:738752-739598 8.30e-13 2_[+2(4.95e-09)]_14_[+1(1.29e-11)]_\ 34 chrVII:774150-774647 5.06e-12 6_[+2(1.21e-09)]_13_[+1(8.37e-10)]_\ 31 chrVII:779379-779756 6.25e-01 100 chrVII:788141-788739 1.46e-01 100 chrVII:794229-794512 4.26e-01 100 chrVII:823343-823708 2.55e-10 12_[+2(5.66e-07)]_14_[+1(7.22e-11)]_\ 24 chrVII:828478-828987 1.41e-08 44_[-1(1.61e-12)]_26 chrVII:844632-846032 7.52e-01 100 chrVII:856517-857680 2.30e-01 100 chrVII:876008-877940 4.89e-01 100 chrVII:878604-879101 3.41e-01 100 chrVII:882788-883943 2.54e-02 13_[-2(5.59e-05)]_67 chrVII:919974-920240 1.79e-01 15_[+3(7.45e-05)]_70 chrVII:930790-931159 9.95e-12 32_[-1(5.79e-12)]_11_[-2(1.63e-07)]_\ 7 chrVII:1000352-1000628 1.64e-02 18_[+3(5.87e-06)]_67 chrVII:1004021-1004407 1.29e-03 57_[+2(3.57e-06)]_23 chrVII:1019678-1020840 3.65e-01 100 chrVIII:34396-35123 1.95e-01 100 chrVIII:62613-63019 2.69e-04 26_[+1(6.52e-08)]_44 chrVIII:74924-75922 6.99e-01 100 chrVIII:103752-104267 1.35e-01 100 chrVIII:115870-116303 8.41e-01 100 chrVIII:125873-126331 6.66e-03 50_[+3(1.09e-06)]_35 chrVIII:132760-133339 1.62e-01 100 chrVIII:134074-134762 8.89e-01 100 chrVIII:145839-146939 7.49e-01 100 chrVIII:148989-149243 1.96e-03 12_[-3(3.90e-07)]_73 chrVIII:175009-175691 7.45e-01 100 chrVIII:237750-238085 7.73e-05 46_[-2(2.71e-08)]_34 chrVIII:296701-297251 6.15e-01 100 chrVIII:358287-358786 5.42e-05 57_[-2(2.71e-08)]_23 chrVIII:382580-383355 2.14e-02 10_[-2(5.59e-05)]_70 chrVIII:388630-389205 9.27e-08 29_[-1(4.40e-12)]_41 chrVIII:411051-411642 9.90e-01 100 chrVIII:451342-451848 4.04e-02 100 chrVIII:452017-453076 4.29e-01 100 chrVIII:466903-467191 3.73e-05 30_[+1(4.66e-08)]_40 chrVIII:475513-475911 1.68e-07 47_[-1(1.13e-11)]_23 chrVIII:505815-506226 1.66e-03 27_[-3(8.59e-07)]_58 chrVIII:555743-556552 9.09e-01 100 chrVIII:556951-557192 7.46e-01 100 chrX:59017-59385 3.47e-01 100 chrX:73365-76495 8.71e-01 100 chrX:90035-90445 2.87e-02 71_[+3(8.28e-06)]_14 chrX:115127-116279 6.40e-01 100 chrX:157425-157951 3.34e-01 100 chrX:160026-160285 1.19e-03 27_[+3(9.95e-05)]_27_[+3(3.90e-07)]_\ 16 chrX:196285-197525 9.52e-01 100 chrX:204518-205006 3.00e-07 28_[+2(3.57e-06)]_12_[+1(3.06e-08)]_\ 10 chrX:208563-209455 3.14e-01 100 chrX:227761-228585 9.24e-01 100 chrX:233460-234575 5.37e-08 10_[+1(5.05e-12)]_60 chrX:354161-354546 2.81e-01 100 chrX:355206-355926 4.57e-01 100 chrX:374235-374804 2.81e-11 [-2(3.57e-06)]_20_[-1(1.61e-12)]_30 chrX:378005-378577 9.35e-01 100 chrX:390913-391614 7.83e-01 100 chrX:396525-397035 1.19e-03 40_[-2(1.63e-07)]_40 chrX:414771-415277 2.40e-08 30_[+1(1.47e-11)]_40 chrX:415599-416391 1.85e-03 65_[-2(7.24e-06)]_15 chrX:422715-423281 1.84e-05 27_[+1(2.57e-09)]_43 chrX:424287-424714 1.65e-05 39_[-2(8.55e-09)]_41 chrX:517649-518112 2.38e-01 100 chrX:519952-521626 2.68e-01 100 chrX:523872-524355 1.18e-06 4_[-2(1.34e-10)]_76 chrX:531617-532286 8.17e-01 100 chrX:538524-538773 8.83e-01 100 chrX:540759-541823 5.87e-01 100 chrX:542754-543251 7.95e-08 7_[-1(1.35e-08)]_29_[-2(1.50e-06)]_\ 14 chrX:545395-545759 4.03e-06 26_[-3(5.48e-09)]_59 chrX:607665-608180 1.39e-01 100 chrX:617675-618285 1.19e-02 56_[-3(1.06e-05)]_29 chrX:651224-651621 2.28e-02 74_[+3(1.98e-05)]_11 chrX:652112-652601 2.37e-01 100 chrX:690589-691045 2.91e-01 100 chrX:703237-703676 4.57e-04 41_[-3(7.60e-07)]_44 chrX:745092-745745 9.79e-03 77_[+2(3.87e-06)]_3 chrXI:767-1107 3.89e-01 100 chrXI:46713-46996 3.55e-01 100 chrXI:67791-68070 3.04e-03 33_[+3(1.09e-06)]_52 chrXI:74413-74821 4.64e-04 62_[+2(1.11e-07)]_18 chrXI:84009-84439 1.90e-06 39_[+2(8.55e-09)]_41 chrXI:99723-99972 2.81e-01 100 chrXI:108726-109097 1.53e-02 42_[+3(3.04e-05)]_3_[+3(5.37e-06)]_\ 25 chrXI:140788-141376 1.03e-01 100 chrXI:158191-159274 9.68e-01 100 chrXI:162431-162754 9.59e-01 100 chrXI:202334-203239 1.58e-01 100 chrXI:219578-220131 8.52e-01 100 chrXI:282813-284443 5.48e-01 100 chrXI:302654-303240 6.52e-03 26_[+2(7.24e-06)]_54 chrXI:307907-308638 9.80e-01 100 chrXI:312878-314002 9.29e-06 14_[-1(6.52e-08)]_12_[-2(8.75e-05)]_\ 24 chrXI:326438-327540 2.17e-02 27_[-2(5.27e-05)]_53 chrXI:379471-379918 8.23e-04 41_[+2(5.66e-07)]_39 chrXI:382197-382480 3.90e-05 17_[+3(6.40e-06)]_36_[-2(6.71e-06)]_\ 12 chrXI:430894-431669 9.63e-01 100 chrXI:458000-458965 7.71e-01 100 chrXI:490734-491332 1.80e-06 23_[+1(7.22e-11)]_47 chrXI:512921-513514 5.46e-01 100 chrXI:517790-518069 9.96e-01 100 chrXI:578779-579320 3.47e-07 27_[+1(1.14e-10)]_43 chrXI:614150-614437 1.74e-05 60_[+3(7.09e-09)]_3_[-3(9.40e-05)]_\ 7 chrXI:618770-619279 5.61e-05 9_[-2(9.04e-06)]_4_[-3(3.41e-06)]_\ 52 chrXI:666491-666783 1.10e-04 21_[-3(5.15e-07)]_13_[-3(1.15e-05)]_\ 7_[-3(1.84e-05)]_14 chrXII:53-243 8.24e-01 100 chrXII:5573-5809 7.73e-06 25_[+3(1.58e-08)]_15_[+3(2.52e-07)]_\ 2_[+3(1.36e-06)]_13 chrXII:47781-49500 9.40e-01 100 chrXII:64283-65657 2.66e-01 100 chrXII:92414-92722 2.28e-04 35_[+2(5.10e-07)]_45 chrXII:167755-168275 1.22e-06 34_[-2(1.34e-10)]_46 chrXII:198679-199726 1.56e-01 100 chrXII:214675-215068 8.65e-08 65_[-1(1.29e-11)]_5 chrXII:232109-234005 4.13e-01 100 chrXII:241641-242021 1.76e-02 26_[+3(4.50e-06)]_6_[+3(1.70e-05)]_\ 38 chrXII:261215-263934 7.59e-01 100 chrXII:366018-366590 5.28e-01 100 chrXII:370613-370949 6.44e-04 51_[-3(3.41e-06)]_34 chrXII:374212-374669 1.48e-06 3_[+1(7.22e-11)]_67 chrXII:424173-424493 1.54e-02 25_[+3(1.46e-05)]_60 chrXII:426873-427428 3.97e-07 37_[+2(3.57e-06)]_12_[+1(3.06e-08)]_\ 1 chrXII:448510-448995 9.03e-01 100 chrXII:459591-460737 1.75e-01 100 chrXII:498349-499854 1.18e-01 100 chrXII:515334-517100 7.60e-01 100 chrXII:521511-522448 3.41e-01 100 chrXII:592317-592719 1.46e-02 68_[+3(1.06e-05)]_17 chrXII:605236-605639 1.67e-05 19_[-2(5.96e-09)]_61 chrXII:628103-629267 7.43e-01 100 chrXII:636754-639892 9.97e-02 100 chrXII:656841-657226 1.32e-01 100 chrXII:673573-674443 1.06e-01 66_[+2(4.42e-05)]_14 chrXII:687668-687845 9.12e-01 100 chrXII:710652-710840 1.50e-04 37_[+3(6.29e-08)]_48 chrXII:713143-713670 1.48e-02 12_[-3(7.60e-06)]_73 chrXII:732006-732300 1.19e-02 54_[-3(1.06e-05)]_31 chrXII:734600-736982 1.77e-01 100 chrXII:780900-781894 7.59e-01 100 chrXII:783877-784518 5.29e-01 100 chrXII:793733-795282 2.16e-01 100 chrXII:796381-797908 9.77e-01 100 chrXII:809762-810759 3.77e-01 100 chrXII:811810-815641 2.29e-01 100 chrXII:818506-819152 9.51e-01 100 chrXII:837912-839200 4.24e-01 100 chrXII:874734-875922 4.81e-01 100 chrXII:897629-898188 6.31e-02 3_[+3(2.29e-05)]_82 chrXII:903373-903710 5.90e-03 31_[+3(1.69e-06)]_54 chrXII:921728-923903 3.99e-02 53_[-1(9.25e-05)]_17 chrXII:932069-932560 5.40e-03 7_[-3(1.09e-06)]_10_[-3(6.99e-06)]_\ 53 chrXII:962813-963276 6.63e-06 35_[-2(8.55e-09)]_45 chrXII:975783-976104 1.00e+00 100 chrXII:1018779-1019417 6.54e-01 100 chrXII:1028167-1028584 2.83e-04 73_[+3(1.30e-07)]_12 chrXII:1051836-1052222 8.19e-01 100 chrXIII:91447-92089 2.51e-02 100 chrXIII:131594-132104 1.37e-10 29_[-1(1.61e-12)]_12_[-2(1.95e-05)]_\ 9 chrXIII:145884-147212 1.81e-01 100 chrXIII:161811-164264 1.30e-01 100 chrXIII:168253-169012 9.94e-01 100 chrXIII:195940-196308 1.96e-04 70_[-2(5.10e-07)]_10 chrXIII:224052-224468 9.98e-03 1_[-3(9.00e-06)]_84 chrXIII:225053-225754 5.61e-01 100 chrXIII:253388-253563 8.72e-01 100 chrXIII:259001-259452 8.85e-07 37_[-2(1.34e-10)]_43 chrXIII:290543-291086 1.03e-01 100 chrXIII:296713-298840 1.56e-02 85_[+3(2.13e-05)] chrXIII:302848-303109 6.11e-03 33_[-3(3.41e-06)]_52 chrXIII:320985-321451 5.84e-06 25_[-2(1.21e-09)]_55 chrXIII:352045-352625 5.93e-11 [+2(2.71e-08)]_31_[+1(9.23e-10)]_19 chrXIII:362939-363347 3.44e-04 8_[+1(6.52e-08)]_62 chrXIII:372179-372752 2.73e-10 33_[-1(7.22e-11)]_14_[-2(5.66e-07)]_\ 3 chrXIII:378922-379625 8.71e-01 100 chrXIII:420359-420866 2.73e-10 29_[-1(7.22e-11)]_14_[-2(5.66e-07)]_\ 7 chrXIII:433519-433763 5.41e-01 100 chrXIII:463431-463872 5.56e-01 100 chrXIII:480400-481031 1.75e-04 2_[-2(2.32e-08)]_78 chrXIII:504598-505216 1.04e-03 43_[+2(5.66e-07)]_37 chrXIII:551005-551828 4.23e-01 100 chrXIII:552524-553309 6.50e-01 100 chrXIII:572653-573822 1.03e-01 16_[+3(3.98e-05)]_69 chrXIII:586134-586899 2.56e-01 100 chrXIII:650695-651226 5.89e-04 71_[+3(9.16e-08)]_14 chrXIII:731929-732644 8.13e-02 100 chrXIII:747694-748124 1.37e-10 36_[-1(1.61e-12)]_12_[-2(1.95e-05)]_\ 2 chrXIII:754405-755271 7.75e-01 100 chrXIII:768185-768443 7.67e-01 100 chrXIII:808050-808529 2.04e-10 10_[-1(1.02e-10)]_12_[-2(3.57e-06)]_\ 28 chrXIII:837729-838181 2.23e-03 28_[+2(1.50e-06)]_52 chrXIII:861216-861437 5.33e-01 100 chrXIV:61980-63579 8.62e-01 100 chrXIV:88969-89717 8.77e-01 100 chrXIV:96001-96462 2.39e-07 63_[-1(1.28e-10)]_7 chrXIV:102578-103544 7.81e-01 100 chrXIV:104579-105102 2.08e-10 20_[+2(1.68e-08)]_13_[+1(1.79e-09)]_\ 17 chrXIV:241369-242190 1.35e-01 100 chrXIV:330517-331104 9.26e-01 100 chrXIV:374629-375100 3.78e-04 60_[+2(2.71e-08)]_20 chrXIV:415133-416217 9.31e-01 100 chrXIV:442856-444252 9.56e-01 100 chrXIV:444441-445220 3.43e-01 100 chrXIV:493932-495699 5.98e-01 100 chrXIV:499104-499500 3.57e-01 100 chrXIV:499726-500688 1.11e-01 100 chrXIV:518070-518352 2.75e-01 100 chrXIV:518679-519130 1.14e-01 100 chrXIV:546489-547367 1.77e-01 100 chrXIV:560159-560788 2.82e-01 100 chrXIV:568052-568451 9.95e-01 100 chrXIV:569631-570050 5.64e-01 100 chrXIV:585516-586207 1.86e-01 100 chrXIV:602068-602572 5.19e-05 47_[+2(4.95e-09)]_33 chrXIV:631695-632008 1.02e-12 48_[-1(1.88e-16)]_22 chrXIV:632500-632872 1.78e-06 2_[+1(3.06e-09)]_68 chrXIV:715989-716636 6.92e-01 100 chrXIV:725517-726361 4.61e-02 30_[+3(2.13e-05)]_55 chrXIV:783722-784318 2.99e-04 63_[-3(7.60e-07)]_[-3(2.52e-07)]_7 chrXV:79739-80161 4.02e-03 22_[-3(3.04e-05)]_7_[-3(8.59e-07)]_\ 41 chrXV:92798-94803 9.86e-01 100 chrXV:109543-110643 7.08e-01 100 chrXV:110860-111212 9.33e-03 21_[-2(3.03e-06)]_59 chrXV:113531-113885 4.90e-01 100 chrXV:161090-161730 6.28e-01 100 chrXV:167960-168459 4.37e-03 25_[-3(1.46e-05)]_8_[+3(1.69e-06)]_\ 37 chrXV:216274-216719 6.53e-03 13_[+3(3.75e-06)]_1_[+3(2.29e-05)]_\ 56 chrXV:226427-226862 9.95e-12 20_[-1(5.79e-12)]_11_[-2(1.63e-07)]_\ 19 chrXV:228049-228901 2.76e-01 100 chrXV:253812-254085 3.63e-03 49_[+3(6.60e-05)]_12_[-3(2.08e-06)]_\ 9 chrXV:274457-275011 2.09e-01 100 chrXV:281684-282920 9.97e-01 100 chrXV:287736-288409 1.83e-01 100 chrXV:300830-301782 1.13e-01 49_[-3(4.84e-05)]_36 chrXV:340126-340733 9.77e-01 100 chrXV:353914-354530 7.57e-01 100 chrXV:438442-439034 2.65e-07 16_[+1(1.14e-10)]_54 chrXV:464275-464799 9.27e-08 30_[+1(4.40e-12)]_40 chrXV:487435-487734 5.83e-01 100 chrXV:505026-505532 1.23e-02 65_[+3(1.15e-05)]_20 chrXV:514383-514687 5.70e-02 100 chrXV:571717-572141 4.66e-01 100 chrXV:594314-594640 5.18e-01 100 chrXV:639186-639472 3.13e-06 34_[-3(1.49e-09)]_51 chrXV:663482-664349 7.39e-03 2_[-2(3.29e-06)]_78 chrXV:678233-679785 1.36e-02 47_[-3(6.40e-06)]_38 chrXV:710066-710524 9.93e-01 100 chrXV:779672-780965 8.87e-01 100 chrXV:826077-826434 2.03e-01 100 chrXV:854043-854795 1.76e-01 100 chrXV:866528-867861 7.33e-01 100 chrXV:882178-882390 1.16e-02 64_[+3(2.30e-06)]_21 chrXV:901425-901734 2.30e-03 7_[-3(3.90e-07)]_78 chrXV:968123-968464 7.09e-04 22_[-3(6.70e-07)]_63 chrXV:976378-976716 5.79e-01 100 chrXV:978797-979186 5.11e-01 100 chrXV:979758-981051 7.96e-01 100 chrXV:1003966-1004377 9.73e-01 100 chrXV:1025692-1026199 8.05e-01 100 chrXV:1027915-1029283 9.14e-01 100 chrXVI:55907-56348 3.72e-01 100 chrXVI:76180-76749 1.88e-01 100 chrXVI:135459-135834 9.28e-03 26_[-3(1.87e-06)]_59 chrXVI:172847-174072 9.22e-01 100 chrXVI:188165-188944 5.19e-01 100 chrXVI:194160-194593 9.24e-01 100 chrXVI:209972-210454 3.10e-08 32_[-1(8.11e-11)]_38 chrXVI:279975-280250 1.10e-04 52_[+3(4.16e-08)]_33 chrXVI:280591-281398 8.02e-01 100 chrXVI:281558-282328 8.18e-02 100 chrXVI:302525-302981 4.10e-01 100 chrXVI:338711-339329 9.99e-01 100 chrXVI:340258-340785 1.68e-01 100 chrXVI:378652-379013 3.02e-04 29_[-3(2.08e-06)]_10_[-3(1.22e-06)]_\ 31 chrXVI:406165-406703 2.79e-01 100 chrXVI:435617-436208 1.89e-07 34_[-1(4.34e-09)]_12_[-2(8.40e-06)]_\ 4 chrXVI:519970-520554 1.74e-01 100 chrXVI:560015-560464 5.93e-11 12_[-1(9.23e-10)]_32_[-2(2.71e-08)]_\ 6 chrXVI:572032-572518 4.54e-04 49_[+2(1.63e-07)]_31 chrXVI:575112-575461 3.35e-03 64_[+3(1.22e-06)]_21 chrXVI:581802-582485 8.07e-08 7_[+1(1.47e-11)]_63 chrXVI:622221-622849 5.55e-08 24_[+2(4.42e-05)]_14_[-1(9.23e-10)]_\ 12 chrXVI:689345-689853 4.26e-07 21_[+2(3.79e-10)]_59 chrXVI:699647-700684 1.32e-03 19_[+3(1.70e-05)]_20_[+3(4.11e-06)]_\ 31 chrXVI:731637-732323 4.43e-01 100 chrXVI:744071-744534 1.22e-07 37_[+2(3.57e-06)]_12_[+1(9.61e-08)]_\ 1 chrXVI:768792-769480 4.16e-01 100 chrXVI:775640-776052 2.28e-02 14_[-2(8.40e-06)]_66 chrXVI:794484-795166 5.47e-01 100 chrXVI:810576-811264 1.80e-01 100 chrXVI:819328-820228 2.48e-01 100 chrXVI:829919-830496 3.55e-01 100 chrXVI:856816-857120 4.39e-06 22_[+1(8.37e-10)]_48 chrXVI:860144-860680 2.90e-12 22_[+2(1.63e-07)]_11_[+1(5.79e-12)]_\ 17 chrXVI:879407-880550 2.05e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************