******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--AFT1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:24975-25476 1.0000 100 chrI:71760-73594 1.0000 100 chrI:81906-82300 1.0000 100 chrI:138926-139355 1.0000 100 chrI:166171-166739 1.0000 100 chrII:9458-9986 1.0000 100 chrII:36231-36846 1.0000 100 chrII:44953-45374 1.0000 100 chrII:60814-61557 1.0000 100 chrII:87948-88571 1.0000 100 chrII:89433-90402 1.0000 100 chrII:165106-165415 1.0000 100 chrII:167901-168200 1.0000 100 chrII:181306-181691 1.0000 100 chrII:197074-197835 1.0000 100 chrII:226974-227357 1.0000 100 chrII:236607-236943 1.0000 100 chrII:237127-237283 1.0000 100 chrII:266211-266693 1.0000 100 chrII:326502-327114 1.0000 100 chrII:332266-332992 1.0000 100 chrII:347394-347963 1.0000 100 chrII:350616-351024 1.0000 100 chrII:405663-406207 1.0000 100 chrII:415493-415920 1.0000 100 chrII:477028-477760 1.0000 100 chrII:592872-593281 1.0000 100 chrII:604091-607017 1.0000 100 chrII:642850-643076 1.0000 100 chrII:644881-645410 1.0000 100 chrIII:129-2063 1.0000 100 chrIII:13975-15419 1.0000 100 chrIII:90782-91092 1.0000 100 chrIII:123421-123792 1.0000 100 chrIII:127500-127898 1.0000 100 chrIII:137785-138986 1.0000 100 chrIII:142388-143032 1.0000 100 chrIII:149715-150228 1.0000 100 chrIII:150951-151583 1.0000 100 chrIII:162106-163300 1.0000 100 chrIII:163453-163895 1.0000 100 chrIII:168065-168555 1.0000 100 chrIII:177158-178792 1.0000 100 chrIII:227635-228234 1.0000 100 chrIII:295343-295962 1.0000 100 chrIII:308630-308975 1.0000 100 chrIV:83328-83993 1.0000 100 chrIV:116515-118191 1.0000 100 chrIV:129493-130991 1.0000 100 chrIV:217152-218041 1.0000 100 chrIV:221696-222372 1.0000 100 chrIV:229273-231859 1.0000 100 chrIV:308013-309528 1.0000 100 chrIV:321636-321958 1.0000 100 chrIV:341239-341662 1.0000 100 chrIV:358068-358484 1.0000 100 chrIV:359025-359786 1.0000 100 chrIV:410195-410455 1.0000 100 chrIV:411238-411667 1.0000 100 chrIV:434036-435094 1.0000 100 chrIV:437538-438264 1.0000 100 chrIV:465215-465549 1.0000 100 chrIV:488438-488995 1.0000 100 chrIV:490698-491289 1.0000 100 chrIV:519652-521163 1.0000 100 chrIV:538905-539329 1.0000 100 chrIV:541227-541862 1.0000 100 chrIV:555458-555635 1.0000 100 chrIV:555790-556428 1.0000 100 chrIV:568503-569462 1.0000 100 chrIV:579031-580704 1.0000 100 chrIV:600926-601733 1.0000 100 chrIV:619653-620232 1.0000 100 chrIV:667702-668608 1.0000 100 chrIV:757480-758375 1.0000 100 chrIV:765095-765562 1.0000 100 chrIV:785192-785680 1.0000 100 chrIV:802585-802839 1.0000 100 chrIV:835843-836297 1.0000 100 chrIV:884245-884613 1.0000 100 chrIV:945765-946634 1.0000 100 chrIV:992681-993237 1.0000 100 chrIV:1013452-1014016 1.0000 100 chrIV:1016958-1018282 1.0000 100 chrIV:1075289-1075751 1.0000 100 chrIV:1095146-1095699 1.0000 100 chrIV:1150491-1151167 1.0000 100 chrIV:1175567-1176086 1.0000 100 chrIV:1201517-1201977 1.0000 100 chrIV:1236468-1237991 1.0000 100 chrIV:1300729-1301352 1.0000 100 chrIV:1305149-1306268 1.0000 100 chrIV:1352044-1353085 1.0000 100 chrIV:1355725-1356019 1.0000 100 chrIV:1356325-1356565 1.0000 100 chrIV:1359426-1360116 1.0000 100 chrIV:1401289-1401899 1.0000 100 chrIV:1450572-1451627 1.0000 100 chrIV:1461109-1461267 1.0000 100 chrIV:1461475-1461851 1.0000 100 chrIX:68152-69005 1.0000 100 chrIX:69203-69511 1.0000 100 chrIX:99393-100020 1.0000 100 chrIX:174674-175369 1.0000 100 chrIX:183281-183711 1.0000 100 chrIX:197358-198072 1.0000 100 chrIX:210663-210973 1.0000 100 chrIX:248553-249021 1.0000 100 chrIX:254197-254560 1.0000 100 chrIX:257360-257933 1.0000 100 chrIX:299962-300523 1.0000 100 chrIX:315546-317612 1.0000 100 chrIX:324132-324806 1.0000 100 chrIX:325342-326093 1.0000 100 chrIX:336093-336670 1.0000 100 chrIX:370257-370596 1.0000 100 chrIX:391383-391885 1.0000 100 chrV:6193-6820 1.0000 100 chrV:42161-42626 1.0000 100 chrV:51972-52347 1.0000 100 chrV:53493-54040 1.0000 100 chrV:61101-62135 1.0000 100 chrV:67155-68768 1.0000 100 chrV:69115-69324 1.0000 100 chrV:85112-86259 1.0000 100 chrV:86423-87635 1.0000 100 chrV:99834-100285 1.0000 100 chrV:117321-118343 1.0000 100 chrV:130803-131382 1.0000 100 chrV:135194-136071 1.0000 100 chrV:140446-140919 1.0000 100 chrV:176804-177446 1.0000 100 chrV:207367-207650 1.0000 100 chrV:249699-250578 1.0000 100 chrV:270368-270666 1.0000 100 chrV:288103-288730 1.0000 100 chrV:305809-306932 1.0000 100 chrV:311767-312297 1.0000 100 chrV:354792-355330 1.0000 100 chrV:362018-362530 1.0000 100 chrV:396168-396586 1.0000 100 chrV:423076-423517 1.0000 100 chrV:431025-431920 1.0000 100 chrV:434402-435137 1.0000 100 chrV:435318-435942 1.0000 100 chrV:438503-438962 1.0000 100 chrV:441248-441661 1.0000 100 chrV:441818-442678 1.0000 100 chrV:443054-443342 1.0000 100 chrV:461762-462226 1.0000 100 chrV:469104-469703 1.0000 100 chrV:486152-487618 1.0000 100 chrV:550937-551596 1.0000 100 chrVI:4538-4759 1.0000 100 chrVI:64168-65365 1.0000 100 chrVI:95423-95892 1.0000 100 chrVI:101368-102078 1.0000 100 chrVI:137242-137837 1.0000 100 chrVI:157899-158610 1.0000 100 chrVI:162005-162473 1.0000 100 chrVI:167242-167670 1.0000 100 chrVI:180584-181256 1.0000 100 chrVI:181459-181838 1.0000 100 chrVI:191113-191758 1.0000 100 chrVI:210424-210897 1.0000 100 chrVI:220795-222166 1.0000 100 chrVI:223272-224153 1.0000 100 chrVI:226419-226974 1.0000 100 chrVII:772-2097 1.0000 100 chrVII:110349-110791 1.0000 100 chrVII:115189-115728 1.0000 100 chrVII:122013-122552 1.0000 100 chrVII:148204-149542 1.0000 100 chrVII:185456-185906 1.0000 100 chrVII:205253-205715 1.0000 100 chrVII:254149-254698 1.0000 100 chrVII:277039-278610 1.0000 100 chrVII:287167-287711 1.0000 100 chrVII:310389-312235 1.0000 100 chrVII:319184-320484 1.0000 100 chrVII:328367-329244 1.0000 100 chrVII:364886-366720 1.0000 100 chrVII:370379-371648 1.0000 100 chrVII:398679-399910 1.0000 100 chrVII:401367-401613 1.0000 100 chrVII:405467-405828 1.0000 100 chrVII:411621-412581 1.0000 100 chrVII:422876-423329 1.0000 100 chrVII:438540-439865 1.0000 100 chrVII:440338-441159 1.0000 100 chrVII:479220-482716 1.0000 100 chrVII:483433-483613 1.0000 100 chrVII:531404-531804 1.0000 100 chrVII:533757-535195 1.0000 100 chrVII:541711-542173 1.0000 100 chrVII:544312-544891 1.0000 100 chrVII:555172-555876 1.0000 100 chrVII:561445-561707 1.0000 100 chrVII:648772-649356 1.0000 100 chrVII:661515-661964 1.0000 100 chrVII:700427-701159 1.0000 100 chrVII:706943-707192 1.0000 100 chrVII:726130-727047 1.0000 100 chrVII:730964-731414 1.0000 100 chrVII:736185-737138 1.0000 100 chrVII:738726-739576 1.0000 100 chrVII:774134-774650 1.0000 100 chrVII:779377-779760 1.0000 100 chrVII:788126-788704 1.0000 100 chrVII:794097-794511 1.0000 100 chrVII:823352-823686 1.0000 100 chrVII:828440-828981 1.0000 100 chrVII:844757-845190 1.0000 100 chrVII:845448-846089 1.0000 100 chrVII:856724-857673 1.0000 100 chrVII:875980-877900 1.0000 100 chrVII:878599-879027 1.0000 100 chrVII:882452-883916 1.0000 100 chrVII:930886-931159 1.0000 100 chrVII:1000338-1000608 1.0000 100 chrVII:1004030-1004403 1.0000 100 chrVIII:34402-35128 1.0000 100 chrVIII:35285-36330 1.0000 100 chrVIII:62506-63008 1.0000 100 chrVIII:74908-75935 1.0000 100 chrVIII:103657-105288 1.0000 100 chrVIII:115861-116301 1.0000 100 chrVIII:125902-126335 1.0000 100 chrVIII:132791-133356 1.0000 100 chrVIII:134044-134684 1.0000 100 chrVIII:145775-146790 1.0000 100 chrVIII:148988-149239 1.0000 100 chrVIII:174911-176266 1.0000 100 chrVIII:237712-238085 1.0000 100 chrVIII:296845-297285 1.0000 100 chrVIII:297475-297687 1.0000 100 chrVIII:358290-358842 1.0000 100 chrVIII:382248-383348 1.0000 100 chrVIII:388653-389221 1.0000 100 chrVIII:411024-412069 1.0000 100 chrVIII:451347-453192 1.0000 100 chrVIII:466905-467210 1.0000 100 chrVIII:475478-475912 1.0000 100 chrVIII:505802-506220 1.0000 100 chrVIII:555091-555481 1.0000 100 chrVIII:555746-556541 1.0000 100 chrX:59015-59394 1.0000 100 chrX:73378-75022 1.0000 100 chrX:75288-76490 1.0000 100 chrX:90061-90447 1.0000 100 chrX:115779-116218 1.0000 100 chrX:138975-140296 1.0000 100 chrX:156544-157954 1.0000 100 chrX:196391-197520 1.0000 100 chrX:204500-205047 1.0000 100 chrX:233713-234638 1.0000 100 chrX:354167-354605 1.0000 100 chrX:355200-355914 1.0000 100 chrX:374195-374855 1.0000 100 chrX:378155-378583 1.0000 100 chrX:390915-391617 1.0000 100 chrX:391805-392110 1.0000 100 chrX:396012-397012 1.0000 100 chrX:414716-415314 1.0000 100 chrX:415736-416472 1.0000 100 chrX:422688-423315 1.0000 100 chrX:424293-424793 1.0000 100 chrX:517671-518125 1.0000 100 chrX:523647-524442 1.0000 100 chrX:531417-532318 1.0000 100 chrX:538523-538754 1.0000 100 chrX:540696-541812 1.0000 100 chrX:542746-543253 1.0000 100 chrX:545426-545751 1.0000 100 chrX:607682-608142 1.0000 100 chrX:617686-618359 1.0000 100 chrX:651257-651621 1.0000 100 chrX:702895-703775 1.0000 100 chrX:745090-745722 1.0000 100 chrXI:767-1088 1.0000 100 chrXI:45980-47014 1.0000 100 chrXI:67748-68093 1.0000 100 chrXI:74403-74868 1.0000 100 chrXI:84014-84429 1.0000 100 chrXI:108707-110144 1.0000 100 chrXI:140778-141382 1.0000 100 chrXI:158216-159353 1.0000 100 chrXI:162431-162739 1.0000 100 chrXI:163385-164356 1.0000 100 chrXI:219609-220091 1.0000 100 chrXI:259152-259817 1.0000 100 chrXI:282826-284475 1.0000 100 chrXI:302578-303982 1.0000 100 chrXI:308003-308464 1.0000 100 chrXI:312977-313999 1.0000 100 chrXI:326423-327557 1.0000 100 chrXI:379488-379930 1.0000 100 chrXI:382203-382471 1.0000 100 chrXI:431128-431649 1.0000 100 chrXI:457636-459318 1.0000 100 chrXI:490744-491313 1.0000 100 chrXI:513037-513514 1.0000 100 chrXI:517794-518066 1.0000 100 chrXI:519314-521271 1.0000 100 chrXI:578744-579302 1.0000 100 chrXI:618057-619399 1.0000 100 chrXI:666607-666779 1.0000 100 chrXII:5575-5798 1.0000 100 chrXII:47856-49199 1.0000 100 chrXII:92237-92720 1.0000 100 chrXII:167613-168251 1.0000 100 chrXII:198348-199991 1.0000 100 chrXII:214695-215068 1.0000 100 chrXII:232092-234182 1.0000 100 chrXII:241484-242016 1.0000 100 chrXII:261106-263983 1.0000 100 chrXII:282595-283946 1.0000 100 chrXII:366040-366553 1.0000 100 chrXII:368685-370226 1.0000 100 chrXII:370559-370950 1.0000 100 chrXII:374196-374719 1.0000 100 chrXII:424155-424548 1.0000 100 chrXII:426917-427447 1.0000 100 chrXII:448513-449064 1.0000 100 chrXII:459593-460162 1.0000 100 chrXII:460432-460734 1.0000 100 chrXII:498194-500129 1.0000 100 chrXII:521483-522455 1.0000 100 chrXII:568107-569122 1.0000 100 chrXII:592310-592720 1.0000 100 chrXII:605160-605627 1.0000 100 chrXII:628198-628856 1.0000 100 chrXII:636757-639935 1.0000 100 chrXII:645828-646051 1.0000 100 chrXII:656828-657220 1.0000 100 chrXII:673515-674590 1.0000 100 chrXII:710660-710834 1.0000 100 chrXII:713141-713651 1.0000 100 chrXII:732008-732305 1.0000 100 chrXII:734576-734995 1.0000 100 chrXII:781458-781884 1.0000 100 chrXII:783927-784514 1.0000 100 chrXII:793727-795358 1.0000 100 chrXII:795579-797773 1.0000 100 chrXII:818505-820288 1.0000 100 chrXII:837671-839391 1.0000 100 chrXII:875151-876313 1.0000 100 chrXII:897466-898231 1.0000 100 chrXII:903341-903657 1.0000 100 chrXII:921714-921928 1.0000 100 chrXII:922095-923967 1.0000 100 chrXII:932066-932492 1.0000 100 chrXII:962723-963360 1.0000 100 chrXII:975783-976102 1.0000 100 chrXII:1017523-1019538 1.0000 100 chrXII:1028175-1028586 1.0000 100 chrXII:1051934-1052220 1.0000 100 chrXIII:91391-92122 1.0000 100 chrXIII:131512-132321 1.0000 100 chrXIII:145845-146284 1.0000 100 chrXIII:168684-169011 1.0000 100 chrXIII:195937-196303 1.0000 100 chrXIII:224062-224436 1.0000 100 chrXIII:225061-225950 1.0000 100 chrXIII:253408-253580 1.0000 100 chrXIII:259002-259606 1.0000 100 chrXIII:290595-291085 1.0000 100 chrXIII:296773-298851 1.0000 100 chrXIII:302866-303562 1.0000 100 chrXIII:306561-306853 1.0000 100 chrXIII:320940-321567 1.0000 100 chrXIII:352081-352620 1.0000 100 chrXIII:362946-363313 1.0000 100 chrXIII:372172-372780 1.0000 100 chrXIII:378779-379628 1.0000 100 chrXIII:388270-389692 1.0000 100 chrXIII:420345-420852 1.0000 100 chrXIII:463431-463847 1.0000 100 chrXIII:480397-480856 1.0000 100 chrXIII:499155-500726 1.0000 100 chrXIII:504658-505219 1.0000 100 chrXIII:551090-552243 1.0000 100 chrXIII:572653-573246 1.0000 100 chrXIII:586489-587053 1.0000 100 chrXIII:650672-651114 1.0000 100 chrXIII:652065-652915 1.0000 100 chrXIII:731460-733571 1.0000 100 chrXIII:747657-748168 1.0000 100 chrXIII:754367-755202 1.0000 100 chrXIII:768139-768446 1.0000 100 chrXIII:808107-808522 1.0000 100 chrXIII:837696-838308 1.0000 100 chrXIII:861208-861420 1.0000 100 chrXIII:873320-874446 1.0000 100 chrXIII:914598-916898 1.0000 100 chrXIV:63112-64546 1.0000 100 chrXIV:88952-90057 1.0000 100 chrXIV:96029-96456 1.0000 100 chrXIV:102584-103211 1.0000 100 chrXIV:104622-105241 1.0000 100 chrXIV:241384-242875 1.0000 100 chrXIV:330433-331273 1.0000 100 chrXIV:374702-375098 1.0000 100 chrXIV:442863-445012 1.0000 100 chrXIV:493889-495616 1.0000 100 chrXIV:499176-500731 1.0000 100 chrXIV:518850-519132 1.0000 100 chrXIV:546543-547369 1.0000 100 chrXIV:560507-560790 1.0000 100 chrXIV:568053-568629 1.0000 100 chrXIV:569621-570047 1.0000 100 chrXIV:585487-586587 1.0000 100 chrXIV:602069-602543 1.0000 100 chrXIV:631727-632014 1.0000 100 chrXIV:632499-632853 1.0000 100 chrXIV:716005-716633 1.0000 100 chrXIV:725508-726363 1.0000 100 chrXIV:739258-739777 1.0000 100 chrXIV:783720-784316 1.0000 100 chrXV:79736-80147 1.0000 100 chrXV:92803-93824 1.0000 100 chrXV:94053-94805 1.0000 100 chrXV:109566-110645 1.0000 100 chrXV:110850-111204 1.0000 100 chrXV:112779-113880 1.0000 100 chrXV:159245-160205 1.0000 100 chrXV:161106-161753 1.0000 100 chrXV:167971-168477 1.0000 100 chrXV:168685-168916 1.0000 100 chrXV:216279-216688 1.0000 100 chrXV:226535-226890 1.0000 100 chrXV:228007-228551 1.0000 100 chrXV:253818-254735 1.0000 100 chrXV:274471-274957 1.0000 100 chrXV:281873-282733 1.0000 100 chrXV:287239-288404 1.0000 100 chrXV:300879-301766 1.0000 100 chrXV:340127-340618 1.0000 100 chrXV:353916-354295 1.0000 100 chrXV:438357-439311 1.0000 100 chrXV:444676-446175 1.0000 100 chrXV:464277-464743 1.0000 100 chrXV:479535-479816 1.0000 100 chrXV:487442-487761 1.0000 100 chrXV:504862-505516 1.0000 100 chrXV:571342-572336 1.0000 100 chrXV:594077-594646 1.0000 100 chrXV:639168-639437 1.0000 100 chrXV:663560-664415 1.0000 100 chrXV:678212-679188 1.0000 100 chrXV:710071-710525 1.0000 100 chrXV:779655-780999 1.0000 100 chrXV:854008-854781 1.0000 100 chrXV:866448-866995 1.0000 100 chrXV:867290-867913 1.0000 100 chrXV:901440-901649 1.0000 100 chrXV:968119-968680 1.0000 100 chrXV:976381-976729 1.0000 100 chrXV:978757-979176 1.0000 100 chrXV:979701-981318 1.0000 100 chrXV:1003934-1004932 1.0000 100 chrXV:1025738-1026263 1.0000 100 chrXV:1027837-1029100 1.0000 100 chrXVI:55825-56349 1.0000 100 chrXVI:75283-76736 1.0000 100 chrXVI:172876-174059 1.0000 100 chrXVI:188179-188379 1.0000 100 chrXVI:188618-188976 1.0000 100 chrXVI:194187-194654 1.0000 100 chrXVI:209326-210744 1.0000 100 chrXVI:280516-282946 1.0000 100 chrXVI:302628-302973 1.0000 100 chrXVI:303139-304510 1.0000 100 chrXVI:338744-339187 1.0000 100 chrXVI:339935-340955 1.0000 100 chrXVI:378646-378991 1.0000 100 chrXVI:404502-405991 1.0000 100 chrXVI:406190-408022 1.0000 100 chrXVI:435186-435430 1.0000 100 chrXVI:435631-436251 1.0000 100 chrXVI:519901-520542 1.0000 100 chrXVI:559960-560463 1.0000 100 chrXVI:571723-572531 1.0000 100 chrXVI:581853-582377 1.0000 100 chrXVI:622310-622853 1.0000 100 chrXVI:689326-689863 1.0000 100 chrXVI:699832-700700 1.0000 100 chrXVI:718480-719320 1.0000 100 chrXVI:731646-732304 1.0000 100 chrXVI:744086-744609 1.0000 100 chrXVI:768338-769472 1.0000 100 chrXVI:775647-776185 1.0000 100 chrXVI:794428-795220 1.0000 100 chrXVI:810576-811229 1.0000 100 chrXVI:819148-819830 1.0000 100 chrXVI:856805-857115 1.0000 100 chrXVI:860100-860681 1.0000 100 chrXVI:880069-880539 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--AFT1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--AFT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--AFT1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 498 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 49800 N= 498 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--AFT1/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF RAGRTCMBSGGTTCGATYCCSSKHGNGVBC MEME-1 width = 30 sites = 80 llr = 1514 E-value = 5.0e-306 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGATYCCSSKHGNGVBC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 46232:3112::::2a2::1:2:4121311 pos.-specific C 1121185431:::a::24a76323221238 probability G 52662:2367a:::8:2::1345:436441 matrix T 1::162:211:aa:::56:21133222121 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 ****** * Relative 1.4 * ****** * Entropy 1.2 * ****** * * (27.3 bits) 1.0 * ******* ** * * 0.7 ** * ******** **** * 0.5 **** *********** ******* * * 0.2 **************** ******** **** 0.0 ------------------------------ Multilevel GAGGTCCCGGGTTCGATTCCCGGAGGGGGC consensus AGCA TAGCA GC TGCTCCATAC sequence GT A TTT CT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGATYCCSSKHGNGVBC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIV:631727-632014 - 27 5.99e-16 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCCGGCTCGCCC CCATTGATTT chrIII:123421-123792 - 22 5.99e-16 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCCGGCTCGCCC CACATTGTTT chrXVI:581853-582377 + 39 1.10e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TTTCTTTTTT chrXIII:480397-480856 - 46 1.10e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TTCTTTTTTT chrX:414716-415314 + 43 1.10e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TAATATTTTT chrVI:226419-226974 - 43 1.10e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TTATCTCTTT chrIX:299962-300523 - 37 1.10e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TATCTTTTTA chrIII:150951-151583 - 68 1.10e-12 CAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TTTCTTTTTT chrXVI:880069-880539 - 43 2.86e-12 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGACC ATTTCTTTTT chrXII:1051934-1052220 - 45 2.86e-12 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGACC ATTATTTTTT chrVII:738726-739576 + 64 2.86e-12 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGACC ATTTACT chrV:550937-551596 - 70 2.86e-12 G GGGATCAGCGGTTCGATCCCGCTAGAGACC AATTTTTTTG chrV:443054-443342 - 55 2.86e-12 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGACC ATATTTTTTT chrXV:594077-594646 - 44 6.07e-12 TTCCCAAGCA TGAGGCCCGGGTTCGATTCCCGGCTTGCGC ATCTGTTTTT chrXII:214695-215068 - 53 6.07e-12 TTGCAAGGAA GAGGTCATCGGTTCGATTCCGGTTGCGTCC ATTTATTTTT chrVIII:475478-475912 - 62 6.07e-12 CACACGGCA AAGGTCCCGAGTTCGATCCTCGGTTGGAAC ATTTTAACAT chrV:311767-312297 - 42 6.07e-12 TTGCAAGGAA GAGGTCATCGGTTCGATTCCGGTTGCGTCC AATGAAATCT chrIV:1075289-1075751 - 3 6.07e-12 TCACACGGCA AAGGTCCCGAGTTCGATCCTCGGTTGGAAC AT chrXIV:96029-96456 - 50 9.39e-12 CTTCCAAGGT GGGGACACGGGTTCGATTCTCGTACCGCTC AAATTTTTTG chrX:531417-532318 + 51 1.25e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCGC AGTTTCTTTT chrIII:142388-143032 - 42 1.25e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCGC ATCTTTTTTA chrXV:464277-464743 + 61 1.65e-11 AAGCATGCGA GAGGCCCTGGGTTCAATTCCCAGCTCGCCC CTTTTATTTT chrVIII:388653-389221 - 7 1.65e-11 AAGCATGCGA GAGGCCCTGGGTTCAATTCCCAGCTCGCCC CATTAT chrVIII:134044-134684 + 48 2.84e-11 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGACC TTTTTTTGCT chrIV:802585-802839 - 70 2.84e-11 G GACAACCCCGGTTCGAATCCGGGTAGGACC TCTTTTTATT chrIII:168065-168555 - 42 2.84e-11 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGACC TTTTTTTGAA chrII:326502-327114 - 35 3.71e-11 TTACACGGCG AAGATCCCGAGTTCGAACCTCGGTTGGATC AAACTCTTTA chrV:130803-131382 - 41 1.67e-10 TTTTGATCCG AACAACCCCGGTTCGAATCCGGGTAAGACC TATTTTTTTC chrXIII:420345-420852 - 41 1.88e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTATCT chrXIII:372172-372780 - 20 1.88e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTTAG chrXI:379488-379930 + 64 1.88e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC AATTAAT chrX:538523-538754 + 8 1.88e-10 TAAGGAG AAGACTGCGGGTTCGAGTCCCGTACGGAAC GTTGATTATT chrVII:823352-823686 + 56 1.88e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTGAA chrV:438503-438962 + 61 1.88e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC AATTTTTTTT chrX:422688-423315 + 28 2.12e-10 TCATAATCTG AAGGTCGAGAGTTCGAACCTCCCCTGGAGC ACATTTTCTT chrXVI:856805-857115 + 34 3.77e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTCC ATTTTAATTT chrVIII:145775-146790 - 11 3.77e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTCC AATCTTTTTT chrVII:774134-774650 + 49 3.77e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTCC AAATTTTTTT chrXIII:290595-291085 + 52 7.32e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGGA GTTTTCTTTT chrV:176804-177446 + 65 7.32e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGGA GTACTT chrXVI:622310-622853 - 10 1.01e-09 AAGTTATCTG GAGGTCCTGTGTTCGATCCACAGAATTCGC ATTTATTTT chrXVI:559960-560463 - 38 1.01e-09 AAGTTATCTG GAGGTCCTGTGTTCGATCCACAGAATTCGC ATTTCTATTT chrXIII:747657-748168 - 31 1.01e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAGT GTTTTTTAGT chrXIII:352081-352620 + 40 1.01e-09 AAGTTATCTG GAGGTCCTGTGTTCGATCCACAGAATTCGC ATTAATTTTT chrX:374195-374855 - 32 1.01e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrVIII:237712-238085 - 1 1.01e-09 AAGTTATCTG GAGGTCCTGTGTTCGATCCACAGAATTCGC chrVII:828440-828981 - 64 1.01e-09 TAATCAG AAGATTATGGGTTCGACCCCCATCGTGAGT GCTTTTTTTG chrVII:440338-441159 - 19 1.01e-09 AAGTTATCTG GAGGTCCTGTGTTCGATCCACAGAATTCGC ATAATAAGCC chrII:405663-406207 + 34 1.01e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrVIII:466905-467210 + 24 1.69e-09 TTGTAATGCA AAGGTCGCTAGTTCAATTCTGGCAGGTGGC ATTATACCGG chrXI:578744-579302 + 57 1.87e-09 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTTTACT chrII:266211-266693 + 18 2.07e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCGATTGGAAGC ATTTTTTTGA chrXIV:632499-632853 + 16 2.79e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTTTC chrVII:730964-731414 + 41 2.79e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTGCT chrXIII:837696-838308 + 34 7.16e-09 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTTT chrXIII:168684-169011 + 56 7.16e-09 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTTT chrX:542746-543253 - 8 7.16e-09 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGAG ATTTTTT chrVI:210424-210897 - 10 7.16e-09 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTT chrXI:490744-491313 + 32 1.12e-08 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGAA GAATTTTTTT chrXVI:744086-744609 + 28 1.22e-08 TTGTAATGCA AAGGTCGTTAGTTCAATTCTGACAGGTGGC AAAATTTTTT chrXII:167613-168251 - 63 1.72e-08 TGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTATTTTTT chrX:523647-524442 - 19 1.72e-08 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTATTTTTT chrVIII:132791-133356 - 4 1.72e-08 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GAT chrIV:1305149-1306268 + 24 1.72e-08 TTGGGCTTTG GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTATTTTTA chrII:226974-227357 + 11 1.72e-08 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTATTTTTT chrXVI:435631-436251 - 3 2.20e-08 TGCAAATCTG TTGGTCCTTAGTTCGATCCTGAGTGCGAGC TT chrXIII:463431-463847 + 6 2.81e-08 GCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTA chrXII:426917-427447 + 41 2.81e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGGA GAATTTTTTT chrX:204500-205047 + 53 2.81e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTT chrVII:544312-544891 - 27 2.81e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTC chrIX:336093-336670 - 19 2.81e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTA chrXIII:362946-363313 + 26 6.12e-08 TTGTGGCCGA TGAAACCCTGGTTCGATTCTAGGAGATGGC ATTTTCTTTT chrVII:319184-320484 + 38 6.12e-08 TTGTGGCCGA TGAAACCCTGGTTCGATTCTAGGAGATGGC ATTTTTTCCG chrXII:732008-732305 + 54 8.21e-08 TGATATCTTC GGATGCAAGGGTTCGAATCCCTTAGCTCTC ATTATTTTTT chrXII:592310-592720 - 55 8.21e-08 TGATATCTTC GGATGCAAGGGTTCGAATCCCTTAGCTCTC ATTATTTTTT chrX:617686-618359 + 17 8.21e-08 TGATATCTTC GGATGCAAGGGTTCGAATCCCTTAGCTCTC ATTATTTTTT chrIV:1150491-1151167 - 64 1.26e-07 GGGTTTT ACCTGCGCAGGTTCGAATCCTGTCTGTGAC GCACTTTATT chrII:347394-347963 + 28 2.61e-07 TTGGACGGTT GTCCGCGCGAGTTCGAACCTCGCATCCTTC AGTAATATTT chrIII:149715-150228 + 40 7.58e-07 TCATAACCCT GATGTCCTCGGATCGAAACCGAGCGGCGCT ATTAAATTTT chrIII:90782-91092 + 55 8.93e-07 AGGTATCGTA AGATGCAAGAGTTCGAATCTCTTAGCAACC ATTATTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGATYCCSSKHGNGVBC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631727-632014 6e-16 26_[-1]_44 chrIII:123421-123792 6e-16 21_[-1]_49 chrXVI:581853-582377 1.1e-12 38_[+1]_32 chrXIII:480397-480856 1.1e-12 45_[-1]_25 chrX:414716-415314 1.1e-12 42_[+1]_28 chrVI:226419-226974 1.1e-12 42_[-1]_28 chrIX:299962-300523 1.1e-12 36_[-1]_34 chrIII:150951-151583 1.1e-12 67_[-1]_3 chrXVI:880069-880539 2.9e-12 42_[-1]_28 chrXII:1051934-1052220 2.9e-12 44_[-1]_26 chrVII:738726-739576 2.9e-12 63_[+1]_7 chrV:550937-551596 2.9e-12 69_[-1]_1 chrV:443054-443342 2.9e-12 54_[-1]_16 chrXV:594077-594646 6.1e-12 43_[-1]_27 chrXII:214695-215068 6.1e-12 52_[-1]_18 chrVIII:475478-475912 6.1e-12 61_[-1]_9 chrV:311767-312297 6.1e-12 41_[-1]_29 chrIV:1075289-1075751 6.1e-12 2_[-1]_68 chrXIV:96029-96456 9.4e-12 49_[-1]_21 chrX:531417-532318 1.2e-11 50_[+1]_20 chrIII:142388-143032 1.2e-11 41_[-1]_29 chrXV:464277-464743 1.6e-11 60_[+1]_10 chrVIII:388653-389221 1.6e-11 6_[-1]_64 chrVIII:134044-134684 2.8e-11 47_[+1]_23 chrIV:802585-802839 2.8e-11 69_[-1]_1 chrIII:168065-168555 2.8e-11 41_[-1]_29 chrII:326502-327114 3.7e-11 34_[-1]_36 chrV:130803-131382 1.7e-10 40_[-1]_30 chrXIII:420345-420852 1.9e-10 40_[-1]_30 chrXIII:372172-372780 1.9e-10 19_[-1]_51 chrXI:379488-379930 1.9e-10 63_[+1]_7 chrX:538523-538754 1.9e-10 7_[+1]_63 chrVII:823352-823686 1.9e-10 55_[+1]_15 chrV:438503-438962 1.9e-10 60_[+1]_10 chrX:422688-423315 2.1e-10 27_[+1]_43 chrXVI:856805-857115 3.8e-10 33_[+1]_37 chrVIII:145775-146790 3.8e-10 10_[-1]_60 chrVII:774134-774650 3.8e-10 48_[+1]_22 chrXIII:290595-291085 7.3e-10 51_[+1]_19 chrV:176804-177446 7.3e-10 64_[+1]_6 chrXVI:622310-622853 1e-09 9_[-1]_61 chrXVI:559960-560463 1e-09 37_[-1]_33 chrXIII:747657-748168 1e-09 30_[-1]_40 chrXIII:352081-352620 1e-09 39_[+1]_31 chrX:374195-374855 1e-09 31_[-1]_39 chrVIII:237712-238085 1e-09 [-1]_70 chrVII:828440-828981 1e-09 63_[-1]_7 chrVII:440338-441159 1e-09 18_[-1]_52 chrII:405663-406207 1e-09 33_[+1]_37 chrVIII:466905-467210 1.7e-09 23_[+1]_47 chrXI:578744-579302 1.9e-09 56_[+1]_14 chrII:266211-266693 2.1e-09 17_[+1]_53 chrXIV:632499-632853 2.8e-09 15_[+1]_55 chrVII:730964-731414 2.8e-09 40_[+1]_30 chrXIII:837696-838308 7.2e-09 33_[+1]_37 chrXIII:168684-169011 7.2e-09 55_[+1]_15 chrX:542746-543253 7.2e-09 7_[-1]_63 chrVI:210424-210897 7.2e-09 9_[-1]_61 chrXI:490744-491313 1.1e-08 31_[+1]_39 chrXVI:744086-744609 1.2e-08 27_[+1]_43 chrXII:167613-168251 1.7e-08 62_[-1]_8 chrX:523647-524442 1.7e-08 18_[-1]_52 chrVIII:132791-133356 1.7e-08 3_[-1]_67 chrIV:1305149-1306268 1.7e-08 23_[+1]_47 chrII:226974-227357 1.7e-08 10_[+1]_60 chrXVI:435631-436251 2.2e-08 2_[-1]_68 chrXIII:463431-463847 2.8e-08 5_[+1]_65 chrXII:426917-427447 2.8e-08 40_[+1]_30 chrX:204500-205047 2.8e-08 52_[+1]_18 chrVII:544312-544891 2.8e-08 26_[-1]_44 chrIX:336093-336670 2.8e-08 18_[-1]_52 chrXIII:362946-363313 6.1e-08 25_[+1]_45 chrVII:319184-320484 6.1e-08 37_[+1]_33 chrXII:732008-732305 8.2e-08 53_[+1]_17 chrXII:592310-592720 8.2e-08 54_[-1]_16 chrX:617686-618359 8.2e-08 16_[+1]_54 chrIV:1150491-1151167 1.3e-07 63_[-1]_7 chrII:347394-347963 2.6e-07 27_[+1]_43 chrIII:149715-150228 7.6e-07 39_[+1]_31 chrIII:90782-91092 8.9e-07 54_[+1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGATYCCSSKHGNGVBC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGRTCMBSGGTTCGATYCCSSKHGNGVBC width=30 seqs=80 chrXIV:631727-632014 ( 27) GAGGTCCCGGGTTCGAGTCCCGGCTCGCCC 1 chrIII:123421-123792 ( 22) GAGGTCCCGGGTTCGAGTCCCGGCTCGCCC 1 chrXVI:581853-582377 ( 39) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrXIII:480397-480856 ( 46) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrX:414716-415314 ( 43) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrVI:226419-226974 ( 43) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrIX:299962-300523 ( 37) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrIII:150951-151583 ( 68) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrXVI:880069-880539 ( 43) GGGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrXII:1051934-1052220 ( 45) GGGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrVII:738726-739576 ( 64) GGGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrV:550937-551596 ( 70) GGGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrV:443054-443342 ( 55) GGGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrXV:594077-594646 ( 44) TGAGGCCCGGGTTCGATTCCCGGCTTGCGC 1 chrXII:214695-215068 ( 53) GAGGTCATCGGTTCGATTCCGGTTGCGTCC 1 chrVIII:475478-475912 ( 62) AAGGTCCCGAGTTCGATCCTCGGTTGGAAC 1 chrV:311767-312297 ( 42) GAGGTCATCGGTTCGATTCCGGTTGCGTCC 1 chrIV:1075289-1075751 ( 3) AAGGTCCCGAGTTCGATCCTCGGTTGGAAC 1 chrXIV:96029-96456 ( 50) GGGGACACGGGTTCGATTCTCGTACCGCTC 1 chrX:531417-532318 ( 51) TGGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrIII:142388-143032 ( 42) TGGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrXV:464277-464743 ( 61) GAGGCCCTGGGTTCAATTCCCAGCTCGCCC 1 chrVIII:388653-389221 ( 7) GAGGCCCTGGGTTCAATTCCCAGCTCGCCC 1 chrVIII:134044-134684 ( 48) GACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrIV:802585-802839 ( 70) GACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrIII:168065-168555 ( 42) GACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrII:326502-327114 ( 35) AAGATCCCGAGTTCGAACCTCGGTTGGATC 1 chrV:130803-131382 ( 41) AACAACCCCGGTTCGAATCCGGGTAAGACC 1 chrXIII:420345-420852 ( 41) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrXIII:372172-372780 ( 20) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrXI:379488-379930 ( 64) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrX:538523-538754 ( 8) AAGACTGCGGGTTCGAGTCCCGTACGGAAC 1 chrVII:823352-823686 ( 56) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrV:438503-438962 ( 61) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrX:422688-423315 ( 28) AAGGTCGAGAGTTCGAACCTCCCCTGGAGC 1 chrXVI:856805-857115 ( 34) GAGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrVIII:145775-146790 ( 11) GAGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrVII:774134-774650 ( 49) GAGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrXIII:290595-291085 ( 52) GGAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrV:176804-177446 ( 65) GGAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrXVI:622310-622853 ( 10) GAGGTCCTGTGTTCGATCCACAGAATTCGC 1 chrXVI:559960-560463 ( 38) GAGGTCCTGTGTTCGATCCACAGAATTCGC 1 chrXIII:747657-748168 ( 31) AAGATTATGGGTTCGACCCCCATCGTGAGT 1 chrXIII:352081-352620 ( 40) GAGGTCCTGTGTTCGATCCACAGAATTCGC 1 chrX:374195-374855 ( 32) AAGATTATGGGTTCGACCCCCATCGTGAGT 1 chrVIII:237712-238085 ( 1) GAGGTCCTGTGTTCGATCCACAGAATTCGC 1 chrVII:828440-828981 ( 64) AAGATTATGGGTTCGACCCCCATCGTGAGT 1 chrVII:440338-441159 ( 19) GAGGTCCTGTGTTCGATCCACAGAATTCGC 1 chrII:405663-406207 ( 34) AAGATTATGGGTTCGACCCCCATCGTGAGT 1 chrVIII:466905-467210 ( 24) AAGGTCGCTAGTTCAATTCTGGCAGGTGGC 1 chrXI:578744-579302 ( 57) AATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrII:266211-266693 ( 18) GAGATCATCGGTTCAAATCCGATTGGAAGC 1 chrXIV:632499-632853 ( 16) AAGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrVII:730964-731414 ( 41) AAGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrXIII:837696-838308 ( 34) GAGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrXIII:168684-169011 ( 56) GAGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrX:542746-543253 ( 8) GAGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrVI:210424-210897 ( 10) GAGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrXI:490744-491313 ( 32) AAGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrXVI:744086-744609 ( 28) AAGGTCGTTAGTTCAATTCTGACAGGTGGC 1 chrXII:167613-168251 ( 63) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrX:523647-524442 ( 19) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrVIII:132791-133356 ( 4) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrIV:1305149-1306268 ( 24) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrII:226974-227357 ( 11) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrXVI:435631-436251 ( 3) TTGGTCCTTAGTTCGATCCTGAGTGCGAGC 1 chrXIII:463431-463847 ( 6) CCAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrXII:426917-427447 ( 41) CCAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrX:204500-205047 ( 53) CCAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrVII:544312-544891 ( 27) CCAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrIX:336093-336670 ( 19) CCAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrXIII:362946-363313 ( 26) TGAAACCCTGGTTCGATTCTAGGAGATGGC 1 chrVII:319184-320484 ( 38) TGAAACCCTGGTTCGATTCTAGGAGATGGC 1 chrXII:732008-732305 ( 54) GGATGCAAGGGTTCGAATCCCTTAGCTCTC 1 chrXII:592310-592720 ( 55) GGATGCAAGGGTTCGAATCCCTTAGCTCTC 1 chrX:617686-618359 ( 17) GGATGCAAGGGTTCGAATCCCTTAGCTCTC 1 chrIV:1150491-1151167 ( 64) ACCTGCGCAGGTTCGAATCCTGTCTGTGAC 1 chrII:347394-347963 ( 28) GTCCGCGCGAGTTCGAACCTCGCATCCTTC 1 chrIII:149715-150228 ( 40) GATGTCCTCGGATCGAAACCGAGCGGCGCT 1 chrIII:90782-91092 ( 55) AGATGCAAGAGTTCGAATCTCTTAGCAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGATYCCSSKHGNGVBC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 35358 bayes= 10.2606 E= 5.0e-306 22 -160 140 -205 101 -46 17 -363 -83 8 166 -363 1 -134 154 -231 -83 -160 -34 98 -1297 206 -1297 -55 -5 125 17 -305 -231 112 60 -39 -183 60 157 -231 -63 -192 186 -231 -1297 -1297 240 -1297 -463 -1297 -1297 167 -1297 -1297 -1297 169 -1297 240 -1297 -1297 -93 -1297 214 -1297 169 -1297 -1297 -1297 -83 -34 8 61 -463 117 -1297 86 -1297 240 -1297 -1297 -231 178 -192 -39 -363 157 78 -183 -55 66 121 -263 -305 -1 125 7 41 83 -1297 -31 -118 17 121 -55 -39 8 78 -39 -163 -75 157 -47 7 8 108 -205 -146 40 112 -47 -146 203 -192 -231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGATYCCSSKHGNGVBC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 80 E= 5.0e-306 0.362500 0.062500 0.500000 0.075000 0.625000 0.137500 0.212500 0.025000 0.175000 0.200000 0.600000 0.025000 0.312500 0.075000 0.550000 0.062500 0.175000 0.062500 0.150000 0.612500 0.000000 0.787500 0.000000 0.212500 0.300000 0.450000 0.212500 0.037500 0.062500 0.412500 0.287500 0.237500 0.087500 0.287500 0.562500 0.062500 0.200000 0.050000 0.687500 0.062500 0.000000 0.000000 1.000000 0.000000 0.012500 0.000000 0.000000 0.987500 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.162500 0.000000 0.837500 0.000000 1.000000 0.000000 0.000000 0.000000 0.175000 0.150000 0.200000 0.475000 0.012500 0.425000 0.000000 0.562500 0.000000 1.000000 0.000000 0.000000 0.062500 0.650000 0.050000 0.237500 0.025000 0.562500 0.325000 0.087500 0.212500 0.300000 0.437500 0.050000 0.037500 0.187500 0.450000 0.325000 0.412500 0.337500 0.000000 0.250000 0.137500 0.212500 0.437500 0.212500 0.237500 0.200000 0.325000 0.237500 0.100000 0.112500 0.562500 0.225000 0.325000 0.200000 0.400000 0.075000 0.112500 0.250000 0.412500 0.225000 0.112500 0.775000 0.050000 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMBSGGTTCGATYCCSSKHGNGVBC MEME-1 regular expression -------------------------------------------------------------------------------- [GA][AG][GC][GA]T[CT][CAG][CGT][GC][GA]GTTCGA[TG][TC]C[CT][CG][GCA][GT][ACT][GCT][GATC][GT][GAC][GCT]C -------------------------------------------------------------------------------- Time 236.04 secs. ******************************************************************************** ******************************************************************************** MOTIF GVNSSCTYWAMCMACTRRRCYAHVNVVSC MEME-2 width = 29 sites = 63 llr = 1053 E-value = 3.1e-165 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVNSSCTYWAMCMACTRRRCYAHVNVVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 13312111465:39::534::a3334311 pos.-specific C 22254624:15a5:8:12:a6:4222359 probability G 54245:2::2::2:::356::::33434: matrix T 213::26562::::2a1:::4:3121::: bits 2.4 * * 2.2 * * 1.9 * * 1.7 * ** * * * Relative 1.4 * ** * * * Entropy 1.2 * *** **** * (24.1 bits) 1.0 * ** *** **** * 0.7 *** ** *** ***** ** 0.5 * *** ** ****** ****** *** 0.2 ** ********************* **** 0.0 ----------------------------- Multilevel GGTCGCTTTACCCACTAGGCCACGAAACC consensus TAAGCT CATA A GAA T AAGGGG sequence CG TCC C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSSCTYWAMCMACTRRRCYAHVNVVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:602069-602543 - 56 9.89e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC ATTGTTATCT chrXII:734576-734995 - 67 9.89e-13 AGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC AAACTTTGTT chrVII:738726-739576 - 21 9.89e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC TATTTTTTTC chrIX:183281-183711 + 39 9.89e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC AGGAATTTGT chrXII:656828-657220 + 4 1.94e-12 AGG GAGCGCGCTACCGACTACGCCACACGCCC AATTTTCTTG chrVIII:145775-146790 + 54 1.94e-12 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC TGATATTTGT chrVII:774134-774650 - 7 1.94e-12 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC AATTAA chrXIII:372172-372780 + 64 2.08e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC AGGTTTTA chrXI:379488-379930 - 21 2.08e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC TATTAATCTG chrXI:308003-308464 + 6 2.08e-10 AAGCA GATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrX:378155-378583 - 41 2.08e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC TATTAATTTA chrVII:823352-823686 - 13 2.08e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC ACTCTTATTG chrV:438503-438962 - 18 2.08e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC TAATTTGTTG chrXV:353916-354295 + 30 2.80e-10 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGC AGTAAACCGT chrIX:174674-175369 - 60 2.80e-10 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGC TCGTACTTGT chrXVI:689326-689863 - 21 3.23e-10 ATTTCAAGTC TGTCGCCTTAACCACTCGGCCATAGTGCC CAAAATAATC chrXII:605160-605627 + 61 3.73e-10 GCTATAAGCA CGAAGCTCTAACCACTGAGCTACACGAGC ATTTTCGAAA chrXV:274471-274957 - 9 5.67e-10 AATAGCAGGG CATCGCCTTAACCACTCGGCCACTGGGAC ACGATTAC chrIII:227635-228234 - 58 6.50e-10 CATTCGAGTC TCTCGCCTTAACCACTCGGCCATAGTGCC ATTTCGATTT chrXIII:504658-505219 - 7 8.49e-10 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACTTAT chrVII:422876-423329 - 40 8.49e-10 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCTGT chrXII:962723-963360 + 36 1.62e-09 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrXI:84014-84429 - 37 1.62e-09 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC ATACAAATTT chrXIV:374702-375098 - 19 1.83e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAGTCCGC TTATTTTTCT chrIV:1095146-1095699 + 61 1.83e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAGTCCGC TAACATAAGA chrX:523647-524442 + 71 2.34e-09 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCC T chrVIII:132791-133356 + 56 2.34e-09 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCC ACTTATTATA chrXVI:622310-622853 + 72 3.34e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC chrXIII:195937-196303 + 72 3.34e-09 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCC chrVIII:358290-358842 + 25 3.34e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrVIII:237712-238085 + 63 3.34e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTT chrI:138926-139355 - 62 3.34e-09 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCC GTACTAATTG chrXI:74403-74868 - 39 5.90e-09 TTAACAGTCG CACGCCTTAACCAACTTGGCCATGGAGTC TAATTGCTAT chrVI:137242-137837 + 42 5.90e-09 TTAACAGTCG CACGCCTTAACCAACTTGGCCATGGAGTC AGTCACTTTT chrIII:127500-127898 - 67 5.90e-09 AGTCG CACGCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrXVI:860100-860681 - 39 1.25e-08 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrX:531417-532318 - 11 1.25e-08 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TCACTAATTG chrVII:930886-931159 + 23 1.25e-08 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TTACTGATTA chrVI:162005-162473 - 39 1.25e-08 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrXIII:572653-573246 + 28 1.38e-08 ATTATGAGAC TGACGCTCTTCCTACTGAGCTACTGAAGC TGTCTGTTAT chrIV:1175567-1176086 - 53 1.38e-08 ATTATGAGAC TGACGCTCTTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrX:414716-415314 - 1 2.06e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC chrVII:122013-122552 - 37 2.06e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TAATTCGTTG chrIV:1201517-1201977 - 53 2.06e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TATTTATTTG chrXV:110850-111204 + 28 4.36e-08 CTTGGAAGGG TGGGATGATAACCACTACACTAACCGCCC GGGTTAATTG chrXIII:808107-808522 + 25 6.21e-08 GATCAGAACC GAAAGTGATAACCACTACACTATAGGACC TTTTTCTTCT chrVIII:134044-134684 - 7 6.21e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC GGAACT chrXIV:631727-632014 + 69 8.02e-08 GCACCCTAAG CGAGAATCATACCTCTAGACCACACGCCC GGT chrIII:123421-123792 + 64 8.02e-08 GCACCCTAAG CGAGAATCATACCTCTAGACCACACGCCC TCCTTTGA chrII:350616-351024 - 57 1.21e-07 GATCAAAACC GAAAGTGATAACCACTACACTATAAAACC CTTTTATTGA chrX:542746-543253 + 67 1.65e-07 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG TATTT chrVI:210424-210897 + 69 1.65e-07 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG TCG chrVI:167242-167670 - 31 1.65e-07 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG TCGTTTTTGT chrVII:1004030-1004403 - 50 1.92e-07 CATTACAAGT GCAACGCTCTACCACTAAGCTAAGGAGGC AAACCCTTGA chrVII:661515-661964 - 60 1.92e-07 CATTACAAGT GCAACGCTCTACCACTAAGCTAAGGAGGC AAATTTTTAC chrXV:340127-340618 + 21 3.92e-07 GTTCGTAGCC AGACGCCGTGACCATTGGGCCACGAGGAA CAGATCTTGA chrX:204500-205047 - 12 5.81e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA TTTTTATGTT chrVII:544312-544891 + 69 5.81e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGA chrVII:531404-531804 - 56 5.81e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGTAACTCGA chrIX:336093-336670 + 61 5.81e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA TTTGTTTCTA chrIV:568503-569462 - 32 5.81e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrXIII:131512-132321 + 2 1.83e-06 T CAGACGCGTTGCCATTACGCCACGCGAGC TAAATTTCTT chrIV:1075289-1075751 + 46 3.74e-06 CGTGTGAAGG CAACGTGATAGCCGCTACACTATTGGAAC AATATTACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSSCTYWAMCMACTRRRCYAHVNVVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602069-602543 9.9e-13 55_[-2]_16 chrXII:734576-734995 9.9e-13 66_[-2]_5 chrVII:738726-739576 9.9e-13 20_[-2]_51 chrIX:183281-183711 9.9e-13 38_[+2]_33 chrXII:656828-657220 1.9e-12 3_[+2]_68 chrVIII:145775-146790 1.9e-12 53_[+2]_18 chrVII:774134-774650 1.9e-12 6_[-2]_65 chrXIII:372172-372780 2.1e-10 63_[+2]_8 chrXI:379488-379930 2.1e-10 20_[-2]_51 chrXI:308003-308464 2.1e-10 5_[+2]_66 chrX:378155-378583 2.1e-10 40_[-2]_31 chrVII:823352-823686 2.1e-10 12_[-2]_59 chrV:438503-438962 2.1e-10 17_[-2]_54 chrXV:353916-354295 2.8e-10 29_[+2]_42 chrIX:174674-175369 2.8e-10 59_[-2]_12 chrXVI:689326-689863 3.2e-10 20_[-2]_51 chrXII:605160-605627 3.7e-10 60_[+2]_11 chrXV:274471-274957 5.7e-10 8_[-2]_63 chrIII:227635-228234 6.5e-10 57_[-2]_14 chrXIII:504658-505219 8.5e-10 6_[-2]_65 chrVII:422876-423329 8.5e-10 39_[-2]_32 chrXII:962723-963360 1.6e-09 35_[+2]_36 chrXI:84014-84429 1.6e-09 36_[-2]_35 chrXIV:374702-375098 1.8e-09 18_[-2]_53 chrIV:1095146-1095699 1.8e-09 60_[+2]_11 chrX:523647-524442 2.3e-09 70_[+2]_1 chrVIII:132791-133356 2.3e-09 55_[+2]_16 chrXVI:622310-622853 3.3e-09 71_[+2] chrXIII:195937-196303 3.3e-09 71_[+2] chrVIII:358290-358842 3.3e-09 24_[+2]_47 chrVIII:237712-238085 3.3e-09 62_[+2]_9 chrI:138926-139355 3.3e-09 61_[-2]_10 chrXI:74403-74868 5.9e-09 38_[-2]_33 chrVI:137242-137837 5.9e-09 41_[+2]_30 chrIII:127500-127898 5.9e-09 66_[-2]_5 chrXVI:860100-860681 1.2e-08 38_[-2]_33 chrX:531417-532318 1.2e-08 10_[-2]_61 chrVII:930886-931159 1.2e-08 22_[+2]_49 chrVI:162005-162473 1.2e-08 38_[-2]_33 chrXIII:572653-573246 1.4e-08 27_[+2]_44 chrIV:1175567-1176086 1.4e-08 52_[-2]_19 chrX:414716-415314 2.1e-08 [-2]_71 chrVII:122013-122552 2.1e-08 36_[-2]_35 chrIV:1201517-1201977 2.1e-08 52_[-2]_19 chrXV:110850-111204 4.4e-08 27_[+2]_44 chrXIII:808107-808522 6.2e-08 24_[+2]_47 chrVIII:134044-134684 6.2e-08 6_[-2]_65 chrXIV:631727-632014 8e-08 68_[+2]_3 chrIII:123421-123792 8e-08 63_[+2]_8 chrII:350616-351024 1.2e-07 56_[-2]_15 chrX:542746-543253 1.7e-07 66_[+2]_5 chrVI:210424-210897 1.7e-07 68_[+2]_3 chrVI:167242-167670 1.7e-07 30_[-2]_41 chrVII:1004030-1004403 1.9e-07 49_[-2]_22 chrVII:661515-661964 1.9e-07 59_[-2]_12 chrXV:340127-340618 3.9e-07 20_[+2]_51 chrX:204500-205047 5.8e-07 11_[-2]_60 chrVII:544312-544891 5.8e-07 68_[+2]_3 chrVII:531404-531804 5.8e-07 55_[-2]_16 chrIX:336093-336670 5.8e-07 60_[+2]_11 chrIV:568503-569462 5.8e-07 31_[-2]_40 chrXIII:131512-132321 1.8e-06 1_[+2]_70 chrIV:1075289-1075751 3.7e-06 45_[+2]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSSCTYWAMCMACTRRRCYAHVNVVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVNSSCTYWAMCMACTRRRCYAHVNVVSC width=29 seqs=63 chrXIV:602069-602543 ( 56) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:734576-734995 ( 67) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrVII:738726-739576 ( 21) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrIX:183281-183711 ( 39) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:656828-657220 ( 4) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrVIII:145775-146790 ( 54) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrVII:774134-774650 ( 7) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrXIII:372172-372780 ( 64) GATGCCATAACCGACTAGACCACGAAACC 1 chrXI:379488-379930 ( 21) GATGCCATAACCGACTAGACCACGAAACC 1 chrXI:308003-308464 ( 6) GATGCCATAACCGACTAGACCACGAAACC 1 chrX:378155-378583 ( 41) GATGCCATAACCGACTAGACCACGAAACC 1 chrVII:823352-823686 ( 13) GATGCCATAACCGACTAGACCACGAAACC 1 chrV:438503-438962 ( 18) GATGCCATAACCGACTAGACCACGAAACC 1 chrXV:353916-354295 ( 30) TGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIX:174674-175369 ( 60) TGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXVI:689326-689863 ( 21) TGTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXII:605160-605627 ( 61) CGAAGCTCTAACCACTGAGCTACACGAGC 1 chrXV:274471-274957 ( 9) CATCGCCTTAACCACTCGGCCACTGGGAC 1 chrIII:227635-228234 ( 58) TCTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXIII:504658-505219 ( 7) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrVII:422876-423329 ( 40) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXII:962723-963360 ( 36) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXI:84014-84429 ( 37) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXIV:374702-375098 ( 19) TGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrIV:1095146-1095699 ( 61) TGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrX:523647-524442 ( 71) TTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrVIII:132791-133356 ( 56) TTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXVI:622310-622853 ( 72) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrXIII:195937-196303 ( 72) CGAGAATCATACCACTAGACCACACGCCC 1 chrVIII:358290-358842 ( 25) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:237712-238085 ( 63) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrI:138926-139355 ( 62) CGAGAATCATACCACTAGACCACACGCCC 1 chrXI:74403-74868 ( 39) CACGCCTTAACCAACTTGGCCATGGAGTC 1 chrVI:137242-137837 ( 42) CACGCCTTAACCAACTTGGCCATGGAGTC 1 chrIII:127500-127898 ( 67) CACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXVI:860100-860681 ( 39) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrX:531417-532318 ( 11) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrVII:930886-931159 ( 23) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:162005-162473 ( 39) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:572653-573246 ( 28) TGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrIV:1175567-1176086 ( 53) TGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrX:414716-415314 ( 1) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVII:122013-122552 ( 37) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1201517-1201977 ( 53) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrXV:110850-111204 ( 28) TGGGATGATAACCACTACACTAACCGCCC 1 chrXIII:808107-808522 ( 25) GAAAGTGATAACCACTACACTATAGGACC 1 chrVIII:134044-134684 ( 7) GAAAGTGATAACCACTACACTATAGGACC 1 chrXIV:631727-632014 ( 69) CGAGAATCATACCTCTAGACCACACGCCC 1 chrIII:123421-123792 ( 64) CGAGAATCATACCTCTAGACCACACGCCC 1 chrII:350616-351024 ( 57) GAAAGTGATAACCACTACACTATAAAACC 1 chrX:542746-543253 ( 67) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:210424-210897 ( 69) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:167242-167670 ( 31) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVII:1004030-1004403 ( 50) GCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:661515-661964 ( 60) GCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrXV:340127-340618 ( 21) AGACGCCGTGACCATTGGGCCACGAGGAA 1 chrX:204500-205047 ( 12) GCCCATTCTGACCATTAAACTATCACGGA 1 chrVII:544312-544891 ( 69) GCCCATTCTGACCATTAAACTATCACGGA 1 chrVII:531404-531804 ( 56) GCCCATTCTGACCATTAAACTATCACGGA 1 chrIX:336093-336670 ( 61) GCCCATTCTGACCATTAAACTATCACGGA 1 chrIV:568503-569462 ( 32) GCCCATTCTGACCATTAAACTATCACGGA 1 chrXIII:131512-132321 ( 2) CAGACGCGTTGCCATTACGCCACGCGAGC 1 chrIV:1075289-1075751 ( 46) CAACGTGATAGCCGCTACACTATTGGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSSCTYWAMCMACTRRRCYAHVNVVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 35856 bayes= 8.2798 E= 3.1e-165 -229 -12 151 -48 -12 12 95 -112 -20 1 33 -4 -148 133 112 -1262 -97 95 133 -1262 -129 171 -199 -59 -170 -12 -12 84 -129 95 -258 62 29 -258 -1262 92 84 -125 -25 -59 62 138 -258 -1262 -1262 240 -1262 -1262 -20 142 1 -329 157 -1262 -199 -329 -1262 215 -1262 -97 -1262 -1262 -1262 169 62 -41 42 -129 -4 1 142 -1262 29 -1262 171 -1262 -1262 240 -1262 -1262 -1262 174 -1262 23 169 -1262 -1262 -1262 10 112 -1262 -29 3 23 82 -129 3 23 59 -83 29 1 95 -229 17 51 88 -329 -170 128 107 -270 -170 218 -199 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSSCTYWAMCMACTRRRCYAHVNVVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 63 E= 3.1e-165 0.063492 0.174603 0.539683 0.222222 0.285714 0.206349 0.365079 0.142857 0.269841 0.190476 0.238095 0.301587 0.111111 0.476190 0.412698 0.000000 0.158730 0.365079 0.476190 0.000000 0.126984 0.619048 0.047619 0.206349 0.095238 0.174603 0.174603 0.555556 0.126984 0.365079 0.031746 0.476190 0.380952 0.031746 0.000000 0.587302 0.555556 0.079365 0.158730 0.206349 0.476190 0.492063 0.031746 0.000000 0.000000 1.000000 0.000000 0.000000 0.269841 0.507937 0.190476 0.031746 0.920635 0.000000 0.047619 0.031746 0.000000 0.841270 0.000000 0.158730 0.000000 0.000000 0.000000 1.000000 0.476190 0.142857 0.253968 0.126984 0.301587 0.190476 0.507937 0.000000 0.380952 0.000000 0.619048 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.634921 0.000000 0.365079 1.000000 0.000000 0.000000 0.000000 0.333333 0.412698 0.000000 0.253968 0.317460 0.222222 0.333333 0.126984 0.317460 0.222222 0.285714 0.174603 0.380952 0.190476 0.365079 0.063492 0.349206 0.269841 0.349206 0.031746 0.095238 0.460317 0.396825 0.047619 0.095238 0.857143 0.047619 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSSCTYWAMCMACTRRRCYAHVNVVSC MEME-2 regular expression -------------------------------------------------------------------------------- [GT][GAC][TAG][CG][GC][CT]T[TC][TA][AT][CA]C[CA]ACT[AG][GA][GA]C[CT]A[CAT][GAC][AGC][AG][AGC][CG]C -------------------------------------------------------------------------------- Time 448.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TRDRRTGTAYGGRTG MEME-3 width = 15 sites = 71 llr = 800 E-value = 3.0e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRDRRTGTAYGGRTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 23436:::7:::3:: pos.-specific C 121::::3:5::::1 probability G 142542a:2:9a7:9 matrix T 5132:8:715:::a1 bits 2.4 2.2 * * 1.9 * ** 1.7 * ** * Relative 1.4 * ** ** Entropy 1.2 ** ***** (16.3 bits) 1.0 **** ****** 0.7 *********** 0.5 ************ 0.2 ** ************ 0.0 --------------- Multilevel TGAGATGTATGGGTG consensus AATAG C C A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRDRRTGTAYGGRTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXV:639168-639437 + 62 2.09e-09 CGGTTGTATG TGTGGTGTACGGGTG TAAAAGTAGT chrX:545426-545751 + 16 1.74e-08 CACGTGCGAG TGCGGTGCATGGGTG GCTGTCTTTT chrV:69115-69324 + 8 2.48e-08 GAAGCTT TGTGGGGTACGGGTG CATGCTCGGC chrXII:5575-5798 - 31 4.00e-08 GTGGTGTGGG TGTGGTGTGTGGGTG TGGTGTATAT chrXI:666607-666779 + 48 4.00e-08 GGTGTGTGGG TGTGGTGTGTGGGTG TGTGGTGTGT chrXII:710660-710834 - 37 6.45e-08 TAACGCAAAA TGAGATGCGTGGGTG TGATTCCTGC chrVII:483433-483613 + 72 1.01e-07 GGCAAAACAG AGTGATGTATGGGTG ATCCCAGCAA chrIV:538905-539329 - 39 1.17e-07 AAGGATTGAA TGAGGGGTGTGGGTG TGATAATTCA chrXV:901440-901649 + 43 1.43e-07 GTCGGAAACG TAAAATGTACGGGTG AACAGTCCCG chrII:181306-181691 - 48 1.43e-07 ATGTATTCAA TGTAATGTATGGGTG CTTTGTAAAG chrXII:932066-932492 + 27 2.06e-07 TTTTTTGTGT TCAGATGTACGGATG TACGGATGTA chrV:270368-270666 - 21 2.06e-07 ACACATTTAG TGGTATGTATGGGTG ATAAATTTTT chrVI:95423-95892 + 26 2.49e-07 CTATACGCAA TCCGGTGTGTGGGTG CATGACTGAT chrI:81906-82300 + 54 2.49e-07 CTCATCTAGC GGAGGTGCACGGATG TACCAACAGT chrXV:79736-80147 + 54 2.95e-07 GTCACTTATT TAATATGTACGGGTG TTTACATGGA chrXIII:145845-146284 - 71 2.95e-07 GTGTATGGTG TATGGTGTATGGATG TACAAAAATG chrXII:1028175-1028586 - 69 2.95e-07 ACCCATACAT TTTGGTGCATGGGTG ATATTTTGTC chrVIII:148988-149239 + 16 3.41e-07 TTTATAATTC AATGGTGCATGGGTG AAAATGTATG chrXIV:783720-784316 + 81 4.61e-07 TGTGTGGGTG TGGTGTGTGTGGGTG TGTGG chrVIII:505802-506220 + 37 5.29e-07 AATGTCTGGG TGAAATGTATGGATG CATAATTGTC chrXII:921714-921928 + 66 6.12e-07 GGCTACTACA GCGGGGGCACGGGTG CATACATCTT chrIII:163453-163895 + 20 6.12e-07 ACAGCCGCGG TTGGGTGCGTGGGTG CGGTAATTTA chrXIII:225061-225950 - 78 7.89e-07 TGTACGGA TGTAATGCACGGATG TTAAACCGGA chrV:140446-140919 + 40 7.89e-07 TTCGGCATTG TAAAAGGTATGGGTG CTTTGTGCGT chrIX:254197-254560 + 27 7.89e-07 GCGCGGCAAT TAGAATGTGTGGGTG CGGAAGCTCG chrIV:341239-341662 + 40 7.89e-07 GACTGGGTGT TAAAATGTACGGATG GAAAAGTAGA chrVII:726130-727047 - 50 9.02e-07 TATGGGTGTA TATAGGGTATGGGTG TACAGTTAAT chrII:592872-593281 + 56 9.02e-07 TATGGAGTTC AAAGATGTATGGATG CAAGAAAAGA chrII:44953-45374 - 58 9.02e-07 CAAACATACA TAGAATGTACGGATG CATGATTGTC chrXVI:378646-378991 + 69 1.13e-06 CAATGAGAAC TCGAATGTACGGATG TTTTCTCTGA chrVIII:125902-126335 - 35 1.13e-06 ATGTAAAGAT GTAGGTGTACGGATG CATTAACGTC chrVII:555172-555876 - 37 1.13e-06 CCCAAACACT TTTAATGCACGGGTG TAAAAGGGAT chrIV:358068-358484 + 20 1.13e-06 TTCCTTGTCA GATAATGTATGGGTG GTGTGTACAC chrXII:903341-903657 - 74 1.41e-06 TCCTAATGCA TGTGGTGCATGGGTC CAATGCTTCT chrII:415493-415920 + 24 1.56e-06 GTCTGGATGA CAAAATGCATGGGTG TAAAAAAGGA chrV:396168-396586 - 53 1.73e-06 TTGGGTTCAC AAAAGTGTACGGATG TATACAACAG chrIV:1355725-1356019 + 14 2.10e-06 AAAAAATACT ATAAATGTATGGGTG TAATTTTAAC chrXV:216279-216688 - 27 2.53e-06 GCCTGGGTTG AGGAAGGCGCGGGTG CTCGGATGTT chrXII:781458-781884 + 32 2.53e-06 GTGGGTTTAT GAAAATGCACGGATG CATTTTTTCT chrIV:411238-411667 - 34 2.53e-06 ACTTTGGGTG CCCGGGGTGTGGGTG TTTGATTTGT chrXII:795579-797773 + 5 2.76e-06 TATC CAGGAGGCACGGATG CAAAAGATAG chrXI:382203-382471 - 19 2.76e-06 TTGTGTTGGG TGTGATGTCCGGATG CAACAGCAGC chrXII:673515-674590 - 53 3.02e-06 TGGATCAATA TCTGGTGCATGGGTC TAAAAAAATT chrVIII:296845-297285 - 43 3.02e-06 GAGAGCATGC TGTGATGTACTGGTG GACGAAATTG chrVII:1000338-1000608 - 36 3.02e-06 GTCCAAATAT GCAGGTGTTTGGGTG CTATCCTAGT chrXII:713141-713651 + 23 3.56e-06 ATTTTTTTAT ACATATGTACGGATG TGATAGTCTG chrXII:645828-646051 - 52 4.21e-06 CCCGACGGGT GAATGGGTGTGGGTG GAACGAGGAT chrXII:370559-370950 + 79 4.21e-06 GGACTAACCG TGTGGTTCATGGGTG GGCGAAG chrXVI:699832-700700 - 45 4.98e-06 AAATTTAGTA TGCTGTGCTTGGGTG TTTTGAAGTG chrXVI:302628-302973 - 80 4.98e-06 GTGTTT TAGGATGTCTGGATG TACAAGTTAG chrXI:67748-68093 - 44 4.98e-06 GAAAATTTGA TGCGGTGCACGGATT TCAGCACGGG chrXV:167971-168477 + 11 5.84e-06 GTAAACTTAA ATATAGGCACGGGTG TTTAAAGCCG chrX:90061-90447 - 58 5.84e-06 AAAAAAACAA GGCCATGTATGGGTG AGAATGTTCA chrV:53493-54040 + 16 6.35e-06 CCCACACATA TTTGGTGTTCGGATG TTAAACAGGG chrV:423076-423517 - 27 7.45e-06 GTTGGGTGTA GAAGGTGTACGGAGG TAAATATGCA chrIV:116515-118191 - 68 8.10e-06 TTATGGGTGT AGATATGTATGGGTC TGAGATTAAT chrXVI:188618-188976 - 44 1.22e-05 AACCATAGTA ACCGATGCATGGGTT TTAAAAGTCA chrXII:897466-898231 - 64 1.22e-05 AATGGGTTTT TTGGAGGTACAGGTG TTGTAGAATT chrXII:424155-424548 - 8 1.32e-05 CGTGCACCAC AGCAATGTACGTGTG TAGCGAC chrXIII:224062-224436 + 13 1.68e-05 TAAAATTCAG TAGTGTGTACGGATT TTACAGTTTC chrII:167901-168200 - 53 1.81e-05 TTCCGTTTTC CAAGAGGTACTGGTG AAAAATATGT chrX:651257-651621 - 58 1.97e-05 AACTTGAGAC AAATATGTATGGGTT AAGAATAATT chrIV:321636-321958 - 53 1.97e-05 AAAAATAAAG ATTGGTGTACGGAGG TAAAGGTATG chrIV:1450572-1451627 + 31 2.12e-05 TTTAAAATAC AAATATGTACAGGTG TTAATGTCTA chrXIV:725508-726363 - 35 2.84e-05 AAGTAGAGCA CCCAATGTACGTGTG GTAAGGAAAT chrXV:866448-866995 - 68 3.05e-05 CATACAAACC CAGAATGCTTGGATG TAGGGAAAAA chrXVI:280516-282946 - 70 3.50e-05 GTAAGGGTGT AAAGAGGTAAGGATG TTAATATTGC chrXI:312977-313999 - 59 3.50e-05 ATTTATTCAA CCAGATGTGCAGATG TAACCAAAAA chrIX:248553-249021 + 38 3.99e-05 ATCATTACAC CGCGAGTCGTGGGTG CATTGTAGTT chrVI:4538-4759 - 85 4.25e-05 T GTGGGTGTGTGGGTA TATATATGTC chrII:89433-90402 - 54 5.75e-05 CTTACAGTCG TGGTATGTATGTGTC TTTGAAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRDRRTGTAYGGRTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639168-639437 2.1e-09 61_[+3]_24 chrX:545426-545751 1.7e-08 15_[+3]_70 chrV:69115-69324 2.5e-08 7_[+3]_78 chrXII:5575-5798 4e-08 30_[-3]_55 chrXI:666607-666779 4e-08 47_[+3]_38 chrXII:710660-710834 6.4e-08 36_[-3]_49 chrVII:483433-483613 1e-07 71_[+3]_14 chrIV:538905-539329 1.2e-07 38_[-3]_47 chrXV:901440-901649 1.4e-07 42_[+3]_43 chrII:181306-181691 1.4e-07 47_[-3]_38 chrXII:932066-932492 2.1e-07 26_[+3]_59 chrV:270368-270666 2.1e-07 20_[-3]_65 chrVI:95423-95892 2.5e-07 25_[+3]_60 chrI:81906-82300 2.5e-07 53_[+3]_32 chrXV:79736-80147 3e-07 53_[+3]_32 chrXIII:145845-146284 3e-07 70_[-3]_15 chrXII:1028175-1028586 3e-07 68_[-3]_17 chrVIII:148988-149239 3.4e-07 15_[+3]_70 chrXIV:783720-784316 4.6e-07 80_[+3]_5 chrVIII:505802-506220 5.3e-07 36_[+3]_49 chrXII:921714-921928 6.1e-07 65_[+3]_20 chrIII:163453-163895 6.1e-07 19_[+3]_66 chrXIII:225061-225950 7.9e-07 77_[-3]_8 chrV:140446-140919 7.9e-07 39_[+3]_46 chrIX:254197-254560 7.9e-07 26_[+3]_59 chrIV:341239-341662 7.9e-07 39_[+3]_46 chrVII:726130-727047 9e-07 49_[-3]_36 chrII:592872-593281 9e-07 55_[+3]_30 chrII:44953-45374 9e-07 57_[-3]_28 chrXVI:378646-378991 1.1e-06 68_[+3]_17 chrVIII:125902-126335 1.1e-06 34_[-3]_51 chrVII:555172-555876 1.1e-06 36_[-3]_49 chrIV:358068-358484 1.1e-06 19_[+3]_66 chrXII:903341-903657 1.4e-06 73_[-3]_12 chrII:415493-415920 1.6e-06 23_[+3]_62 chrV:396168-396586 1.7e-06 52_[-3]_33 chrIV:1355725-1356019 2.1e-06 13_[+3]_72 chrXV:216279-216688 2.5e-06 26_[-3]_59 chrXII:781458-781884 2.5e-06 31_[+3]_54 chrIV:411238-411667 2.5e-06 33_[-3]_52 chrXII:795579-797773 2.8e-06 4_[+3]_81 chrXI:382203-382471 2.8e-06 18_[-3]_67 chrXII:673515-674590 3e-06 52_[-3]_33 chrVIII:296845-297285 3e-06 42_[-3]_43 chrVII:1000338-1000608 3e-06 35_[-3]_50 chrXII:713141-713651 3.6e-06 22_[+3]_63 chrXII:645828-646051 4.2e-06 51_[-3]_34 chrXII:370559-370950 4.2e-06 78_[+3]_7 chrXVI:699832-700700 5e-06 44_[-3]_41 chrXVI:302628-302973 5e-06 79_[-3]_6 chrXI:67748-68093 5e-06 43_[-3]_42 chrXV:167971-168477 5.8e-06 10_[+3]_75 chrX:90061-90447 5.8e-06 57_[-3]_28 chrV:53493-54040 6.3e-06 15_[+3]_70 chrV:423076-423517 7.5e-06 26_[-3]_59 chrIV:116515-118191 8.1e-06 67_[-3]_18 chrXVI:188618-188976 1.2e-05 43_[-3]_42 chrXII:897466-898231 1.2e-05 63_[-3]_22 chrXII:424155-424548 1.3e-05 7_[-3]_78 chrXIII:224062-224436 1.7e-05 12_[+3]_73 chrII:167901-168200 1.8e-05 52_[-3]_33 chrX:651257-651621 2e-05 57_[-3]_28 chrIV:321636-321958 2e-05 52_[-3]_33 chrIV:1450572-1451627 2.1e-05 30_[+3]_55 chrXIV:725508-726363 2.8e-05 34_[-3]_51 chrXV:866448-866995 3.1e-05 67_[-3]_18 chrXVI:280516-282946 3.5e-05 69_[-3]_16 chrXI:312977-313999 3.5e-05 58_[-3]_27 chrIX:248553-249021 4e-05 37_[+3]_48 chrVI:4538-4759 4.3e-05 84_[-3]_1 chrII:89433-90402 5.8e-05 53_[-3]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRDRRTGTAYGGRTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRDRRTGTAYGGRTG width=15 seqs=71 chrXV:639168-639437 ( 62) TGTGGTGTACGGGTG 1 chrX:545426-545751 ( 16) TGCGGTGCATGGGTG 1 chrV:69115-69324 ( 8) TGTGGGGTACGGGTG 1 chrXII:5575-5798 ( 31) TGTGGTGTGTGGGTG 1 chrXI:666607-666779 ( 48) TGTGGTGTGTGGGTG 1 chrXII:710660-710834 ( 37) TGAGATGCGTGGGTG 1 chrVII:483433-483613 ( 72) AGTGATGTATGGGTG 1 chrIV:538905-539329 ( 39) TGAGGGGTGTGGGTG 1 chrXV:901440-901649 ( 43) TAAAATGTACGGGTG 1 chrII:181306-181691 ( 48) TGTAATGTATGGGTG 1 chrXII:932066-932492 ( 27) TCAGATGTACGGATG 1 chrV:270368-270666 ( 21) TGGTATGTATGGGTG 1 chrVI:95423-95892 ( 26) TCCGGTGTGTGGGTG 1 chrI:81906-82300 ( 54) GGAGGTGCACGGATG 1 chrXV:79736-80147 ( 54) TAATATGTACGGGTG 1 chrXIII:145845-146284 ( 71) TATGGTGTATGGATG 1 chrXII:1028175-1028586 ( 69) TTTGGTGCATGGGTG 1 chrVIII:148988-149239 ( 16) AATGGTGCATGGGTG 1 chrXIV:783720-784316 ( 81) TGGTGTGTGTGGGTG 1 chrVIII:505802-506220 ( 37) TGAAATGTATGGATG 1 chrXII:921714-921928 ( 66) GCGGGGGCACGGGTG 1 chrIII:163453-163895 ( 20) TTGGGTGCGTGGGTG 1 chrXIII:225061-225950 ( 78) TGTAATGCACGGATG 1 chrV:140446-140919 ( 40) TAAAAGGTATGGGTG 1 chrIX:254197-254560 ( 27) TAGAATGTGTGGGTG 1 chrIV:341239-341662 ( 40) TAAAATGTACGGATG 1 chrVII:726130-727047 ( 50) TATAGGGTATGGGTG 1 chrII:592872-593281 ( 56) AAAGATGTATGGATG 1 chrII:44953-45374 ( 58) TAGAATGTACGGATG 1 chrXVI:378646-378991 ( 69) TCGAATGTACGGATG 1 chrVIII:125902-126335 ( 35) GTAGGTGTACGGATG 1 chrVII:555172-555876 ( 37) TTTAATGCACGGGTG 1 chrIV:358068-358484 ( 20) GATAATGTATGGGTG 1 chrXII:903341-903657 ( 74) TGTGGTGCATGGGTC 1 chrII:415493-415920 ( 24) CAAAATGCATGGGTG 1 chrV:396168-396586 ( 53) AAAAGTGTACGGATG 1 chrIV:1355725-1356019 ( 14) ATAAATGTATGGGTG 1 chrXV:216279-216688 ( 27) AGGAAGGCGCGGGTG 1 chrXII:781458-781884 ( 32) GAAAATGCACGGATG 1 chrIV:411238-411667 ( 34) CCCGGGGTGTGGGTG 1 chrXII:795579-797773 ( 5) CAGGAGGCACGGATG 1 chrXI:382203-382471 ( 19) TGTGATGTCCGGATG 1 chrXII:673515-674590 ( 53) TCTGGTGCATGGGTC 1 chrVIII:296845-297285 ( 43) TGTGATGTACTGGTG 1 chrVII:1000338-1000608 ( 36) GCAGGTGTTTGGGTG 1 chrXII:713141-713651 ( 23) ACATATGTACGGATG 1 chrXII:645828-646051 ( 52) GAATGGGTGTGGGTG 1 chrXII:370559-370950 ( 79) TGTGGTTCATGGGTG 1 chrXVI:699832-700700 ( 45) TGCTGTGCTTGGGTG 1 chrXVI:302628-302973 ( 80) TAGGATGTCTGGATG 1 chrXI:67748-68093 ( 44) TGCGGTGCACGGATT 1 chrXV:167971-168477 ( 11) ATATAGGCACGGGTG 1 chrX:90061-90447 ( 58) GGCCATGTATGGGTG 1 chrV:53493-54040 ( 16) TTTGGTGTTCGGATG 1 chrV:423076-423517 ( 27) GAAGGTGTACGGAGG 1 chrIV:116515-118191 ( 68) AGATATGTATGGGTC 1 chrXVI:188618-188976 ( 44) ACCGATGCATGGGTT 1 chrXII:897466-898231 ( 64) TTGGAGGTACAGGTG 1 chrXII:424155-424548 ( 8) AGCAATGTACGTGTG 1 chrXIII:224062-224436 ( 13) TAGTGTGTACGGATT 1 chrII:167901-168200 ( 53) CAAGAGGTACTGGTG 1 chrX:651257-651621 ( 58) AAATATGTATGGGTT 1 chrIV:321636-321958 ( 53) ATTGGTGTACGGAGG 1 chrIV:1450572-1451627 ( 31) AAATATGTACAGGTG 1 chrXIV:725508-726363 ( 35) CCCAATGTACGTGTG 1 chrXV:866448-866995 ( 68) CAGAATGCTTGGATG 1 chrXVI:280516-282946 ( 70) AAAGAGGTAAGGATG 1 chrXI:312977-313999 ( 59) CCAGATGTGCAGATG 1 chrIX:248553-249021 ( 38) CGCGAGTCGTGGGTG 1 chrVI:4538-4759 ( 85) GTGGGTGTGTGGGTA 1 chrII:89433-90402 ( 54) TGGTATGTATGTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRDRRTGTAYGGRTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 42828 bayes= 10.0702 E= 3.0e-062 -56 -75 -43 78 12 -29 95 -114 24 -43 16 -14 -14 -375 150 -88 89 -1279 116 -1279 -1279 -1279 6 137 -1279 -1279 236 -346 -1279 71 -1279 115 121 -275 6 -246 -446 125 -1279 78 -288 -1279 229 -346 -1279 -1279 234 -288 12 -1279 181 -1279 -1279 -1279 -275 165 -446 -175 220 -246 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRDRRTGTAYGGRTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 71 E= 3.0e-062 0.211268 0.112676 0.140845 0.535211 0.338028 0.154930 0.366197 0.140845 0.366197 0.140845 0.211268 0.281690 0.281690 0.014085 0.535211 0.169014 0.577465 0.000000 0.422535 0.000000 0.000000 0.000000 0.197183 0.802817 0.000000 0.000000 0.971831 0.028169 0.000000 0.309859 0.000000 0.690141 0.718310 0.028169 0.197183 0.056338 0.014085 0.450704 0.000000 0.535211 0.042254 0.000000 0.929577 0.028169 0.000000 0.000000 0.957746 0.042254 0.338028 0.000000 0.661972 0.000000 0.000000 0.000000 0.028169 0.971831 0.014085 0.056338 0.873239 0.056338 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRDRRTGTAYGGRTG MEME-3 regular expression -------------------------------------------------------------------------------- [TA][GA][ATG][GA][AG]TG[TC]A[TC]GG[GA]TG -------------------------------------------------------------------------------- Time 652.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:24975-25476 9.98e-01 100 chrI:71760-73594 5.44e-02 100 chrI:81906-82300 3.97e-05 53_[+3(2.49e-07)]_32 chrI:138926-139355 9.93e-07 61_[-2(3.34e-09)]_10 chrI:166171-166739 5.48e-01 100 chrII:9458-9986 9.03e-01 100 chrII:36231-36846 8.58e-02 63_[-2(5.52e-05)]_8 chrII:44953-45374 1.39e-03 57_[-3(9.02e-07)]_28 chrII:60814-61557 8.91e-01 100 chrII:87948-88571 6.40e-01 100 chrII:89433-90402 1.58e-01 53_[-3(5.75e-05)]_32 chrII:165106-165415 6.76e-02 100 chrII:167901-168200 1.29e-02 52_[-3(1.81e-05)]_33 chrII:181306-181691 1.38e-03 47_[-3(1.43e-07)]_38 chrII:197074-197835 9.57e-01 100 chrII:226974-227357 5.86e-05 10_[+1(1.72e-08)]_60 chrII:236607-236943 5.59e-01 100 chrII:237127-237283 9.94e-02 48_[+1(7.34e-05)]_22 chrII:266211-266693 2.31e-05 17_[+1(2.07e-09)]_53 chrII:326502-327114 4.29e-07 34_[-1(3.71e-11)]_6_[-1(2.26e-05)] chrII:332266-332992 1.05e-01 100 chrII:347394-347963 1.23e-03 27_[+1(2.61e-07)]_43 chrII:350616-351024 5.65e-04 56_[-2(1.21e-07)]_15 chrII:405663-406207 5.95e-06 33_[+1(1.01e-09)]_37 chrII:415493-415920 2.19e-03 7_[+3(2.12e-05)]_1_[+3(1.56e-06)]_\ 62 chrII:477028-477760 3.73e-01 100 chrII:592872-593281 6.04e-03 38_[+3(5.75e-05)]_2_[+3(9.02e-07)]_\ 30 chrII:604091-607017 5.68e-01 100 chrII:642850-643076 9.89e-01 100 chrII:644881-645410 1.09e-01 100 chrIII:129-2063 3.98e-01 100 chrIII:13975-15419 8.51e-02 100 chrIII:90782-91092 2.61e-03 54_[+1(8.93e-07)]_16 chrIII:123421-123792 8.33e-17 21_[-1(5.99e-16)]_12_[+2(8.02e-08)]_\ 8 chrIII:127500-127898 3.51e-05 66_[-2(5.90e-09)]_5 chrIII:137785-138986 7.81e-02 100 chrIII:142388-143032 1.24e-07 41_[-1(1.25e-11)]_29 chrIII:149715-150228 1.82e-03 39_[+1(7.58e-07)]_31 chrIII:150951-151583 4.18e-09 67_[-1(1.10e-12)]_3 chrIII:162106-163300 9.68e-02 100 chrIII:163453-163895 7.16e-04 19_[+3(6.12e-07)]_23_[+3(9.53e-05)]_\ 28 chrIII:168065-168555 1.69e-07 41_[-1(2.84e-11)]_29 chrIII:177158-178792 8.91e-01 100 chrIII:227635-228234 2.06e-06 57_[-2(6.50e-10)]_14 chrIII:295343-295962 4.84e-01 100 chrIII:308630-308975 6.39e-02 100 chrIV:83328-83993 9.99e-01 100 chrIV:116515-118191 1.06e-02 67_[-3(8.10e-06)]_1_[-3(4.25e-05)]_\ 2 chrIV:129493-130991 6.23e-02 100 chrIV:217152-218041 5.06e-01 100 chrIV:221696-222372 1.36e-01 100 chrIV:229273-231859 9.13e-01 100 chrIV:308013-309528 8.98e-02 44_[+2(4.99e-05)]_27 chrIV:321636-321958 6.84e-02 52_[-3(1.97e-05)]_11_[-3(2.65e-05)]_\ 7 chrIV:341239-341662 1.48e-03 39_[+3(7.89e-07)]_46 chrIV:358068-358484 4.72e-03 19_[+3(1.13e-06)]_66 chrIV:359025-359786 8.90e-01 100 chrIV:410195-410455 7.34e-01 100 chrIV:411238-411667 9.67e-04 33_[-3(2.53e-06)]_52 chrIV:434036-435094 8.17e-01 100 chrIV:437538-438264 5.45e-01 100 chrIV:465215-465549 1.48e-01 100 chrIV:488438-488995 7.98e-01 100 chrIV:490698-491289 9.66e-01 100 chrIV:519652-521163 1.18e-01 100 chrIV:538905-539329 7.08e-06 38_[-3(1.17e-07)]_47 chrIV:541227-541862 7.41e-01 100 chrIV:555458-555635 6.90e-01 100 chrIV:555790-556428 9.43e-02 100 chrIV:568503-569462 1.12e-04 31_[-2(5.81e-07)]_40 chrIV:579031-580704 1.58e-01 100 chrIV:600926-601733 1.36e-01 50_[+2(7.46e-05)]_21 chrIV:619653-620232 4.89e-01 100 chrIV:667702-668608 5.27e-01 100 chrIV:757480-758375 2.77e-01 100 chrIV:765095-765562 1.76e-01 100 chrIV:785192-785680 8.75e-01 100 chrIV:802585-802839 2.90e-07 69_[-1(2.84e-11)]_1 chrIV:835843-836297 6.93e-01 100 chrIV:884245-884613 8.50e-01 100 chrIV:945765-946634 3.92e-01 100 chrIV:992681-993237 5.83e-01 100 chrIV:1013452-1014016 8.53e-01 100 chrIV:1016958-1018282 9.61e-01 100 chrIV:1075289-1075751 1.80e-10 2_[-1(6.07e-12)]_13_[+2(3.74e-06)]_\ 26 chrIV:1095146-1095699 2.58e-07 60_[+2(1.83e-09)]_11 chrIV:1150491-1151167 9.00e-04 63_[-1(1.26e-07)]_7 chrIV:1175567-1176086 5.20e-05 52_[-2(1.38e-08)]_19 chrIV:1201517-1201977 4.64e-05 52_[-2(2.06e-08)]_19 chrIV:1236468-1237991 5.14e-01 100 chrIV:1300729-1301352 9.49e-01 100 chrIV:1305149-1306268 4.20e-05 23_[+1(1.72e-08)]_47 chrIV:1352044-1353085 8.57e-01 100 chrIV:1355725-1356019 8.09e-03 13_[+3(2.10e-06)]_9_[+3(4.21e-06)]_\ 48 chrIV:1356325-1356565 7.41e-02 69_[+1(3.64e-05)]_1 chrIV:1359426-1360116 1.55e-02 23_[+1(5.10e-05)]_47 chrIV:1401289-1401899 1.28e-01 100 chrIV:1450572-1451627 3.25e-02 30_[+3(2.12e-05)]_55 chrIV:1461109-1461267 9.35e-02 100 chrIV:1461475-1461851 1.34e-01 100 chrIX:68152-69005 2.50e-01 100 chrIX:69203-69511 5.07e-01 100 chrIX:99393-100020 6.03e-01 100 chrIX:174674-175369 9.46e-07 59_[-2(2.80e-10)]_12 chrIX:183281-183711 2.82e-08 38_[+2(9.89e-13)]_33 chrIX:197358-198072 6.10e-01 100 chrIX:210663-210973 3.24e-01 100 chrIX:248553-249021 5.54e-02 37_[+3(3.99e-05)]_48 chrIX:254197-254560 2.49e-03 26_[+3(7.89e-07)]_59 chrIX:257360-257933 3.27e-01 100 chrIX:299962-300523 3.62e-09 36_[-1(1.10e-12)]_34 chrIX:315546-317612 3.69e-01 100 chrIX:324132-324806 1.40e-01 61_[+1(9.81e-05)]_9 chrIX:325342-326093 6.99e-01 100 chrIX:336093-336670 1.71e-08 18_[-1(2.81e-08)]_12_[+2(5.81e-07)]_\ 11 chrIX:370257-370596 2.48e-01 100 chrIX:391383-391885 7.17e-02 22_[-2(4.99e-05)]_49 chrV:6193-6820 6.13e-01 100 chrV:42161-42626 6.31e-01 100 chrV:51972-52347 8.58e-01 100 chrV:53493-54040 1.38e-03 3_[-3(2.76e-06)]_82 chrV:61101-62135 5.87e-01 100 chrV:67155-68768 9.10e-02 100 chrV:69115-69324 2.03e-05 7_[+3(2.48e-08)]_78 chrV:85112-86259 2.47e-02 100 chrV:86423-87635 2.85e-01 100 chrV:99834-100285 9.85e-01 100 chrV:117321-118343 1.05e-01 100 chrV:130803-131382 5.71e-07 40_[-1(1.67e-10)]_30 chrV:135194-136071 1.27e-01 100 chrV:140446-140919 2.56e-03 39_[+3(7.89e-07)]_22_[+3(4.98e-06)]_\ 9 chrV:176804-177446 6.27e-07 64_[+1(7.32e-10)]_6 chrV:207367-207650 7.86e-01 100 chrV:249699-250578 3.51e-03 45_[-2(4.99e-05)]_26 chrV:270368-270666 1.90e-03 20_[-3(2.06e-07)]_24_[-3(5.75e-05)]_\ 26 chrV:288103-288730 3.91e-01 100 chrV:305809-306932 9.56e-02 100 chrV:311767-312297 8.63e-08 41_[-1(6.07e-12)]_29 chrV:354792-355330 3.23e-02 10_[+3(2.65e-05)]_75 chrV:362018-362530 6.41e-01 100 chrV:396168-396586 9.05e-03 52_[-3(1.73e-06)]_3_[-3(7.24e-05)]_\ 15 chrV:423076-423517 5.83e-03 26_[-3(7.45e-06)]_59 chrV:431025-431920 9.14e-01 100 chrV:434402-435137 4.98e-01 100 chrV:435318-435942 6.15e-01 100 chrV:438503-438962 3.30e-13 17_[-2(2.08e-10)]_14_[+1(1.88e-10)]_\ 10 chrV:441248-441661 5.37e-01 100 chrV:441818-442678 3.50e-01 100 chrV:443054-443342 4.27e-08 54_[-1(2.86e-12)]_16 chrV:461762-462226 5.81e-01 100 chrV:469104-469703 5.20e-01 100 chrV:486152-487618 9.09e-01 100 chrV:550937-551596 3.16e-08 69_[-1(2.86e-12)]_1 chrVI:4538-4759 3.02e-02 84_[-3(4.25e-05)]_1 chrVI:64168-65365 2.10e-01 100 chrVI:95423-95892 1.02e-04 25_[+3(2.49e-07)]_60 chrVI:101368-102078 7.08e-01 100 chrVI:137242-137837 3.68e-06 41_[+2(5.90e-09)]_30 chrVI:157899-158610 3.25e-01 100 chrVI:162005-162473 1.83e-05 38_[-2(1.25e-08)]_33 chrVI:167242-167670 1.22e-03 30_[-2(1.65e-07)]_41 chrVI:180584-181256 7.42e-01 100 chrVI:181459-181838 7.87e-01 100 chrVI:191113-191758 7.42e-01 100 chrVI:210424-210897 7.56e-09 9_[-1(7.16e-09)]_29_[+2(1.65e-07)]_\ 3 chrVI:220795-222166 5.48e-01 100 chrVI:223272-224153 3.93e-02 100 chrVI:226419-226974 3.62e-09 42_[-1(1.10e-12)]_28 chrVII:772-2097 9.42e-01 100 chrVII:110349-110791 6.29e-01 100 chrVII:115189-115728 8.59e-01 100 chrVII:122013-122552 7.71e-05 36_[-2(2.06e-08)]_35 chrVII:148204-149542 8.66e-01 100 chrVII:185456-185906 6.68e-01 100 chrVII:205253-205715 2.56e-01 100 chrVII:254149-254698 7.40e-01 100 chrVII:277039-278610 5.60e-01 100 chrVII:287167-287711 4.51e-03 37_[+2(1.19e-05)]_34 chrVII:310389-312235 9.98e-01 100 chrVII:319184-320484 3.81e-04 37_[+1(6.12e-08)]_33 chrVII:328367-329244 7.70e-01 100 chrVII:364886-366720 9.99e-01 100 chrVII:370379-371648 6.44e-01 100 chrVII:398679-399910 4.82e-01 100 chrVII:401367-401613 9.78e-01 100 chrVII:405467-405828 9.48e-01 100 chrVII:411621-412581 5.54e-01 100 chrVII:422876-423329 8.45e-06 39_[-2(8.49e-10)]_32 chrVII:438540-439865 4.91e-01 100 chrVII:440338-441159 8.16e-07 18_[-1(1.01e-09)]_52 chrVII:479220-482716 8.27e-03 69_[+2(7.46e-05)]_2 chrVII:483433-483613 1.41e-05 10_[+1(4.17e-05)]_31_[+3(1.01e-07)]_\ 14 chrVII:531404-531804 2.97e-05 55_[-2(5.81e-07)]_16 chrVII:533757-535195 9.47e-01 100 chrVII:541711-542173 5.98e-01 100 chrVII:544312-544891 1.71e-08 26_[-1(2.81e-08)]_12_[+2(5.81e-07)]_\ 3 chrVII:555172-555876 5.21e-03 36_[-3(1.13e-06)]_49 chrVII:561445-561707 9.95e-01 100 chrVII:648772-649356 4.31e-01 100 chrVII:661515-661964 8.48e-04 59_[-2(1.92e-07)]_12 chrVII:700427-701159 1.05e-01 100 chrVII:706943-707192 9.92e-01 100 chrVII:726130-727047 4.26e-03 49_[-3(9.02e-07)]_2_[-3(2.31e-06)]_\ 19 chrVII:730964-731414 5.85e-06 40_[+1(2.79e-09)]_30 chrVII:736185-737138 7.67e-01 100 chrVII:738726-739576 5.08e-17 20_[-2(9.89e-13)]_14_[+1(2.86e-12)]_\ 7 chrVII:774134-774650 2.05e-15 6_[-2(1.94e-12)]_13_[+1(3.77e-10)]_\ 22 chrVII:779377-779760 8.94e-01 100 chrVII:788126-788704 7.65e-02 100 chrVII:794097-794511 9.55e-01 100 chrVII:823352-823686 2.95e-13 12_[-2(2.08e-10)]_14_[+1(1.88e-10)]_\ 15 chrVII:828440-828981 9.23e-06 63_[-1(1.01e-09)]_7 chrVII:844757-845190 3.03e-01 100 chrVII:845448-846089 8.29e-01 100 chrVII:856724-857673 4.26e-01 100 chrVII:875980-877900 4.30e-01 100 chrVII:878599-879027 7.29e-03 23_[+2(1.19e-05)]_48 chrVII:882452-883916 1.07e-01 100 chrVII:930886-931159 7.75e-05 22_[+2(1.25e-08)]_49 chrVII:1000338-1000608 2.14e-03 35_[-3(3.02e-06)]_50 chrVII:1004030-1004403 9.62e-05 49_[-2(1.92e-07)]_22 chrVIII:34402-35128 3.42e-01 100 chrVIII:35285-36330 3.14e-01 100 chrVIII:62506-63008 1.03e-01 100 chrVIII:74908-75935 8.58e-01 100 chrVIII:103657-105288 4.45e-01 100 chrVIII:115861-116301 8.68e-01 100 chrVIII:125902-126335 6.01e-03 34_[-3(1.13e-06)]_51 chrVIII:132791-133356 2.49e-10 3_[-1(1.72e-08)]_22_[+2(2.34e-09)]_\ 16 chrVIII:134044-134684 5.64e-12 6_[-2(6.21e-08)]_12_[+1(2.84e-11)]_\ 23 chrVIII:145775-146790 2.38e-15 10_[-1(3.77e-10)]_13_[+2(1.94e-12)]_\ 18 chrVIII:148988-149239 9.19e-05 15_[+3(3.41e-07)]_70 chrVIII:174911-176266 5.21e-01 100 chrVIII:237712-238085 8.43e-12 [-1(1.01e-09)]_32_[+2(3.34e-09)]_9 chrVIII:296845-297285 5.23e-03 16_[+3(1.68e-05)]_11_[-3(3.02e-06)]_\ 43 chrVIII:297475-297687 7.56e-01 100 chrVIII:358290-358842 2.33e-05 24_[+2(3.34e-09)]_47 chrVIII:382248-383348 6.09e-01 100 chrVIII:388653-389221 4.25e-08 6_[-1(1.65e-11)]_64 chrVIII:411024-412069 1.49e-01 100 chrVIII:451347-453192 4.07e-01 100 chrVIII:466905-467210 3.23e-07 23_[+1(1.69e-09)]_47 chrVIII:475478-475912 9.60e-08 61_[-1(6.07e-12)]_9 chrVIII:505802-506220 3.84e-03 36_[+3(5.29e-07)]_49 chrVIII:555091-555481 6.77e-02 100 chrVIII:555746-556541 7.75e-01 100 chrX:59015-59394 2.80e-01 100 chrX:73378-75022 3.02e-01 100 chrX:75288-76490 5.92e-01 100 chrX:90061-90447 9.16e-03 57_[-3(5.84e-06)]_28 chrX:115779-116218 1.20e-01 100 chrX:138975-140296 6.28e-01 100 chrX:156544-157954 7.75e-01 100 chrX:196391-197520 6.75e-01 100 chrX:204500-205047 1.71e-08 11_[-2(5.81e-07)]_12_[+1(2.81e-08)]_\ 18 chrX:233713-234638 3.41e-01 100 chrX:354167-354605 5.85e-01 100 chrX:355200-355914 9.21e-01 100 chrX:374195-374855 5.95e-06 31_[-1(1.01e-09)]_39 chrX:378155-378583 5.68e-07 40_[-2(2.08e-10)]_31 chrX:390915-391617 8.10e-01 100 chrX:391805-392110 7.13e-02 100 chrX:396012-397012 9.90e-01 100 chrX:414716-415314 9.06e-14 [-2(2.06e-08)]_13_[+1(1.10e-12)]_28 chrX:415736-416472 5.58e-01 100 chrX:422688-423315 9.75e-07 27_[+1(2.12e-10)]_6_[-1(8.63e-05)]_\ 7 chrX:424293-424793 5.09e-01 100 chrX:517671-518125 2.35e-01 100 chrX:523647-524442 2.49e-10 18_[-1(1.72e-08)]_22_[+2(2.34e-09)]_\ 1 chrX:531417-532318 1.58e-12 10_[-2(1.25e-08)]_11_[+1(1.25e-11)]_\ 20 chrX:538523-538754 3.37e-06 7_[+1(1.88e-10)]_63 chrX:540696-541812 1.21e-01 100 chrX:542746-543253 7.56e-09 7_[-1(7.16e-09)]_29_[+2(1.65e-07)]_\ 5 chrX:545426-545751 2.59e-05 15_[+3(1.74e-08)]_70 chrX:607682-608142 6.12e-01 100 chrX:617686-618359 1.65e-05 16_[+1(8.21e-08)]_54 chrX:651257-651621 3.19e-02 57_[-3(1.97e-05)]_28 chrX:702895-703775 8.91e-01 100 chrX:745090-745722 2.10e-01 100 chrXI:767-1088 5.23e-01 100 chrXI:45980-47014 6.35e-01 100 chrXI:67748-68093 5.59e-03 43_[-3(4.98e-06)]_42 chrXI:74403-74868 4.62e-05 38_[-2(5.90e-09)]_33 chrXI:84014-84429 4.74e-06 36_[-2(1.62e-09)]_35 chrXI:108707-110144 5.15e-01 100 chrXI:140778-141382 2.90e-01 100 chrXI:158216-159353 6.59e-01 100 chrXI:162431-162739 9.44e-01 100 chrXI:163385-164356 6.54e-01 100 chrXI:219609-220091 8.35e-01 100 chrXI:259152-259817 4.27e-02 100 chrXI:282826-284475 9.07e-01 100 chrXI:302578-303982 6.64e-01 100 chrXI:308003-308464 6.87e-07 5_[+2(2.08e-10)]_66 chrXI:312977-313999 8.12e-03 58_[-3(3.50e-05)]_27 chrXI:326423-327557 1.69e-01 100 chrXI:379488-379930 2.90e-13 20_[-2(2.08e-10)]_14_[+1(1.88e-10)]_\ 7 chrXI:382203-382471 8.32e-05 18_[-3(2.76e-06)]_67 chrXI:431128-431649 9.14e-01 100 chrXI:457636-459318 9.06e-01 100 chrXI:490744-491313 8.17e-05 31_[+1(1.12e-08)]_39 chrXI:513037-513514 8.49e-01 100 chrXI:517794-518066 6.57e-01 100 chrXI:519314-521271 5.33e-01 100 chrXI:578744-579302 1.90e-06 56_[+1(1.87e-09)]_14 chrXI:618057-619399 3.15e-01 100 chrXI:666607-666779 3.91e-05 47_[+3(4.00e-08)]_[+3(4.00e-08)]_8_\ [+3(4.25e-05)] chrXII:5575-5798 4.84e-05 30_[-3(4.00e-08)]_15_[-3(4.61e-07)]_\ 2_[-3(1.56e-06)]_8 chrXII:47856-49199 4.80e-01 100 chrXII:92237-92720 3.40e-01 100 chrXII:167613-168251 5.86e-05 62_[-1(1.72e-08)]_8 chrXII:198348-199991 9.88e-02 100 chrXII:214695-215068 1.06e-07 52_[-1(6.07e-12)]_18 chrXII:232092-234182 6.30e-01 100 chrXII:241484-242016 3.27e-01 100 chrXII:261106-263983 7.80e-01 100 chrXII:282595-283946 5.96e-02 100 chrXII:366040-366553 3.82e-01 100 chrXII:368685-370226 4.77e-01 100 chrXII:370559-370950 3.94e-04 9_[+3(2.12e-05)]_54_[+3(4.21e-06)]_\ 7 chrXII:374196-374719 7.10e-01 100 chrXII:424155-424548 2.37e-02 7_[-3(1.32e-05)]_78 chrXII:426917-427447 6.18e-05 40_[+1(2.81e-08)]_30 chrXII:448513-449064 6.50e-01 100 chrXII:459593-460162 4.12e-01 100 chrXII:460432-460734 1.91e-01 100 chrXII:498194-500129 5.77e-01 100 chrXII:521483-522455 2.44e-01 100 chrXII:568107-569122 3.87e-01 100 chrXII:592310-592720 1.65e-05 54_[-1(8.21e-08)]_16 chrXII:605160-605627 4.73e-07 60_[+2(3.73e-10)]_11 chrXII:628198-628856 8.99e-01 100 chrXII:636757-639935 3.51e-01 100 chrXII:645828-646051 1.91e-04 51_[-3(4.21e-06)]_34 chrXII:656828-657220 4.92e-09 3_[+2(1.94e-12)]_68 chrXII:673515-674590 1.15e-03 52_[-3(3.02e-06)]_33 chrXII:710660-710834 5.03e-05 36_[-3(6.45e-08)]_49 chrXII:713141-713651 7.13e-03 22_[+3(3.56e-06)]_63 chrXII:732008-732305 3.08e-06 53_[+1(8.21e-08)]_17 chrXII:734576-734995 1.75e-08 66_[-2(9.89e-13)]_5 chrXII:781458-781884 7.50e-03 31_[+3(2.53e-06)]_54 chrXII:783927-784514 8.00e-01 100 chrXII:793727-795358 1.57e-01 100 chrXII:795579-797773 1.20e-02 4_[+3(2.76e-06)]_81 chrXII:818505-820288 5.65e-01 100 chrXII:837671-839391 8.10e-01 100 chrXII:875151-876313 7.74e-01 100 chrXII:897466-898231 1.94e-02 63_[-3(1.22e-05)]_22 chrXII:903341-903657 5.05e-04 73_[-3(1.41e-06)]_12 chrXII:921714-921928 2.04e-04 65_[+3(6.12e-07)]_20 chrXII:922095-923967 2.70e-01 100 chrXII:932066-932492 1.79e-03 26_[+3(2.06e-07)]_1_[+3(9.02e-07)]_\ 10_[+3(3.56e-06)]_18 chrXII:962723-963360 6.18e-06 35_[+2(1.62e-09)]_36 chrXII:975783-976102 9.82e-01 100 chrXII:1017523-1019538 6.24e-01 100 chrXII:1028175-1028586 1.01e-03 68_[-3(2.95e-07)]_17 chrXII:1051934-1052220 4.35e-08 44_[-1(2.86e-12)]_26 chrXIII:91391-92122 2.42e-01 100 chrXIII:131512-132321 8.68e-03 1_[+2(1.83e-06)]_70 chrXIII:145845-146284 2.80e-03 70_[-3(2.95e-07)]_15 chrXIII:168684-169011 1.33e-05 55_[+1(7.16e-09)]_15 chrXIII:195937-196303 8.69e-07 71_[+2(3.34e-09)] chrXIII:224062-224436 4.89e-02 12_[+3(1.68e-05)]_73 chrXIII:225061-225950 2.37e-03 77_[-3(7.89e-07)]_8 chrXIII:253408-253580 5.41e-01 100 chrXIII:259002-259606 2.17e-01 100 chrXIII:290595-291085 6.27e-07 51_[+1(7.32e-10)]_19 chrXIII:296773-298851 2.10e-01 100 chrXIII:302866-303562 3.76e-01 100 chrXIII:306561-306853 7.16e-01 100 chrXIII:320940-321567 6.00e-01 100 chrXIII:352081-352620 2.92e-06 39_[+1(1.01e-09)]_31 chrXIII:362946-363313 4.51e-04 25_[+1(6.12e-08)]_45 chrXIII:372172-372780 3.25e-13 19_[-1(1.88e-10)]_14_[+2(2.08e-10)]_\ 8 chrXIII:378779-379628 8.05e-01 100 chrXIII:388270-389692 4.92e-01 100 chrXIII:420345-420852 1.52e-06 40_[-1(1.88e-10)]_30 chrXIII:463431-463847 5.66e-05 5_[+1(2.81e-08)]_65 chrXIII:480397-480856 3.62e-09 45_[-1(1.10e-12)]_25 chrXIII:499155-500726 9.49e-01 100 chrXIII:504658-505219 8.45e-06 6_[-2(8.49e-10)]_65 chrXIII:551090-552243 1.30e-03 3_[-3(4.02e-07)]_82 chrXIII:572653-573246 1.23e-04 27_[+2(1.38e-08)]_44 chrXIII:586489-587053 9.73e-01 100 chrXIII:650672-651114 4.76e-01 100 chrXIII:652065-652915 2.55e-01 100 chrXIII:731460-733571 9.88e-01 100 chrXIII:747657-748168 8.37e-06 30_[-1(1.01e-09)]_40 chrXIII:754367-755202 1.02e-01 55_[+1(8.35e-05)]_15 chrXIII:768139-768446 7.25e-01 100 chrXIII:808107-808522 6.04e-05 24_[+2(6.21e-08)]_47 chrXIII:837696-838308 8.59e-05 33_[+1(7.16e-09)]_37 chrXIII:861208-861420 1.92e-02 100 chrXIII:873320-874446 1.13e-01 100 chrXIII:914598-916898 5.86e-01 100 chrXIV:63112-64546 2.50e-01 100 chrXIV:88952-90057 5.43e-01 100 chrXIV:96029-96456 1.56e-08 49_[-1(9.39e-12)]_21 chrXIV:102584-103211 7.19e-01 100 chrXIV:104622-105241 4.40e-01 100 chrXIV:241384-242875 7.30e-01 100 chrXIV:330433-331273 6.28e-01 100 chrXIV:374702-375098 5.28e-06 18_[-2(1.83e-09)]_53 chrXIV:442863-445012 7.69e-01 100 chrXIV:493889-495616 9.22e-01 100 chrXIV:499176-500731 9.44e-01 100 chrXIV:518850-519132 2.79e-02 100 chrXIV:546543-547369 3.22e-01 100 chrXIV:560507-560790 3.53e-01 100 chrXIV:568053-568629 9.87e-01 100 chrXIV:569621-570047 6.04e-01 100 chrXIV:585487-586587 4.72e-01 100 chrXIV:602069-602543 1.20e-08 55_[-2(9.89e-13)]_16 chrXIV:631727-632014 8.33e-17 26_[-1(5.99e-16)]_12_[+2(8.02e-08)]_\ 3 chrXIV:632499-632853 2.42e-05 15_[+1(2.79e-09)]_55 chrXIV:716005-716633 3.70e-01 100 chrXIV:725508-726363 7.87e-02 34_[-3(2.84e-05)]_51 chrXIV:739258-739777 4.90e-01 100 chrXIV:783720-784316 6.51e-04 65_[+3(1.01e-06)]_[+3(4.61e-07)]_5 chrXV:79736-80147 1.98e-03 31_[+3(9.54e-06)]_7_[+3(2.95e-07)]_\ 32 chrXV:92803-93824 5.15e-01 100 chrXV:94053-94805 9.21e-02 100 chrXV:109566-110645 2.10e-01 100 chrXV:110850-111204 1.23e-04 27_[+2(4.36e-08)]_44 chrXV:112779-113880 9.62e-01 100 chrXV:159245-160205 5.70e-01 100 chrXV:161106-161753 7.75e-01 100 chrXV:167971-168477 5.72e-03 10_[+3(5.84e-06)]_75 chrXV:168685-168916 4.26e-01 100 chrXV:216279-216688 2.31e-03 26_[-3(2.53e-06)]_1_[-3(3.74e-05)]_\ 43 chrXV:226535-226890 7.57e-01 100 chrXV:228007-228551 7.58e-01 100 chrXV:253818-254735 4.38e-01 100 chrXV:274471-274957 1.37e-06 8_[-2(5.67e-10)]_63 chrXV:281873-282733 9.61e-01 100 chrXV:287239-288404 2.81e-01 100 chrXV:300879-301766 5.80e-02 29_[+3(6.10e-05)]_56 chrXV:340127-340618 6.56e-04 20_[+2(3.92e-07)]_51 chrXV:353916-354295 3.10e-06 29_[+2(2.80e-10)]_42 chrXV:438357-439311 7.20e-01 100 chrXV:444676-446175 5.85e-01 100 chrXV:464277-464743 4.25e-08 60_[+1(1.65e-11)]_10 chrXV:479535-479816 2.88e-01 100 chrXV:487442-487761 7.85e-01 100 chrXV:504862-505516 3.73e-01 100 chrXV:571342-572336 9.97e-01 100 chrXV:594077-594646 1.60e-09 43_[-1(6.07e-12)]_27 chrXV:639168-639437 3.13e-06 61_[+3(2.09e-09)]_24 chrXV:663560-664415 8.73e-01 100 chrXV:678212-679188 9.63e-01 100 chrXV:710071-710525 9.63e-01 100 chrXV:779655-780999 2.44e-01 100 chrXV:854008-854781 6.95e-01 100 chrXV:866448-866995 5.93e-02 67_[-3(3.05e-05)]_18 chrXV:867290-867913 2.30e-01 100 chrXV:901440-901649 2.48e-04 42_[+3(1.43e-07)]_43 chrXV:968119-968680 4.23e-01 100 chrXV:976381-976729 6.59e-01 100 chrXV:978757-979176 4.19e-01 100 chrXV:979701-981318 4.66e-01 100 chrXV:1003934-1004932 8.08e-01 100 chrXV:1025738-1026263 4.42e-01 100 chrXV:1027837-1029100 5.05e-02 100 chrXVI:55825-56349 5.30e-01 100 chrXVI:75283-76736 5.09e-01 100 chrXVI:172876-174059 9.91e-01 100 chrXVI:188179-188379 3.69e-01 100 chrXVI:188618-188976 9.20e-03 43_[-3(1.22e-05)]_42 chrXVI:194187-194654 4.82e-01 100 chrXVI:209326-210744 9.99e-01 100 chrXVI:280516-282946 3.61e-02 69_[-3(3.50e-05)]_1_[-3(9.54e-06)] chrXVI:302628-302973 1.55e-02 79_[-3(4.98e-06)]_6 chrXVI:303139-304510 6.89e-02 100 chrXVI:338744-339187 8.54e-01 100 chrXVI:339935-340955 3.02e-02 50_[-1(2.26e-05)]_20 chrXVI:378646-378991 1.16e-04 43_[+3(4.21e-06)]_10_[+3(1.13e-06)]_\ 17 chrXVI:404502-405991 7.93e-01 100 chrXVI:406190-408022 1.44e-01 100 chrXVI:435186-435430 9.65e-01 100 chrXVI:435631-436251 1.54e-06 2_[-1(2.20e-08)]_12_[+2(3.12e-05)]_\ 27 chrXVI:519901-520542 6.86e-01 100 chrXVI:559960-560463 3.72e-06 37_[-1(1.01e-09)]_33 chrXVI:571723-572531 8.82e-01 100 chrXVI:581853-582377 3.62e-09 38_[+1(1.10e-12)]_32 chrXVI:622310-622853 8.43e-12 9_[-1(1.01e-09)]_32_[+2(3.34e-09)] chrXVI:689326-689863 2.84e-06 20_[-2(3.23e-10)]_51 chrXVI:699832-700700 1.64e-03 44_[-3(4.98e-06)]_41 chrXVI:718480-719320 1.60e-01 100 chrXVI:731646-732304 5.60e-01 100 chrXVI:744086-744609 1.63e-06 27_[+1(1.22e-08)]_43 chrXVI:768338-769472 1.61e-01 100 chrXVI:775647-776185 7.47e-01 100 chrXVI:794428-795220 4.16e-01 100 chrXVI:810576-811229 9.48e-01 100 chrXVI:819148-819830 4.15e-01 100 chrXVI:856805-857115 2.03e-06 33_[+1(3.77e-10)]_37 chrXVI:860100-860681 4.14e-05 38_[-2(1.25e-08)]_33 chrXVI:880069-880539 4.35e-08 42_[-1(2.86e-12)]_28 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************