******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--ACE2/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71849-73258 1.0000 100 chrI:81841-82347 1.0000 100 chrI:138947-139346 1.0000 100 chrI:166172-166596 1.0000 100 chrII:9443-9884 1.0000 100 chrII:36249-36607 1.0000 100 chrII:44952-45390 1.0000 100 chrII:60670-62000 1.0000 100 chrII:88943-89469 1.0000 100 chrII:89634-90059 1.0000 100 chrII:144064-145393 1.0000 100 chrII:165104-165397 1.0000 100 chrII:167908-168206 1.0000 100 chrII:181298-181712 1.0000 100 chrII:197308-197850 1.0000 100 chrII:226973-227334 1.0000 100 chrII:266209-266658 1.0000 100 chrII:326345-327151 1.0000 100 chrII:331873-332038 1.0000 100 chrII:332245-333059 1.0000 100 chrII:347399-347983 1.0000 100 chrII:350615-351050 1.0000 100 chrII:405673-406223 1.0000 100 chrII:415492-416266 1.0000 100 chrII:477031-477762 1.0000 100 chrII:592889-593276 1.0000 100 chrII:604074-607116 1.0000 100 chrII:644897-645418 1.0000 100 chrIII:65-1729 1.0000 100 chrIII:57394-59095 1.0000 100 chrIII:90782-91101 1.0000 100 chrIII:123386-123811 1.0000 100 chrIII:127533-127889 1.0000 100 chrIII:142618-143004 1.0000 100 chrIII:149728-150131 1.0000 100 chrIII:151125-151570 1.0000 100 chrIII:163472-163883 1.0000 100 chrIII:168130-168552 1.0000 100 chrIII:177508-177900 1.0000 100 chrIII:178257-178767 1.0000 100 chrIII:227758-228219 1.0000 100 chrIII:295333-295893 1.0000 100 chrIII:308621-308968 1.0000 100 chrIII:316225-316598 1.0000 100 chrIV:83312-84123 1.0000 100 chrIV:117154-118026 1.0000 100 chrIV:130265-131128 1.0000 100 chrIV:216646-217554 1.0000 100 chrIV:221665-222398 1.0000 100 chrIV:229469-230464 1.0000 100 chrIV:307981-309303 1.0000 100 chrIV:321623-321977 1.0000 100 chrIV:340974-341797 1.0000 100 chrIV:358066-358500 1.0000 100 chrIV:359205-359763 1.0000 100 chrIV:410214-410457 1.0000 100 chrIV:411064-411676 1.0000 100 chrIV:433960-435058 1.0000 100 chrIV:437546-438175 1.0000 100 chrIV:488432-488992 1.0000 100 chrIV:489742-491280 1.0000 100 chrIV:519657-519964 1.0000 100 chrIV:520689-521449 1.0000 100 chrIV:538856-539501 1.0000 100 chrIV:568720-569659 1.0000 100 chrIV:579023-580437 1.0000 100 chrIV:619739-620412 1.0000 100 chrIV:667705-668569 1.0000 100 chrIV:721083-721493 1.0000 100 chrIV:757493-758405 1.0000 100 chrIV:768336-768913 1.0000 100 chrIV:802563-802841 1.0000 100 chrIV:835836-836271 1.0000 100 chrIV:884291-884572 1.0000 100 chrIV:945790-946759 1.0000 100 chrIV:992677-993216 1.0000 100 chrIV:1013444-1013987 1.0000 100 chrIV:1016952-1017515 1.0000 100 chrIV:1075291-1075754 1.0000 100 chrIV:1095164-1095657 1.0000 100 chrIV:1150693-1151160 1.0000 100 chrIV:1175582-1176094 1.0000 100 chrIV:1201522-1202003 1.0000 100 chrIV:1236506-1237983 1.0000 100 chrIV:1300873-1301361 1.0000 100 chrIV:1305395-1305810 1.0000 100 chrIV:1351900-1353076 1.0000 100 chrIV:1355719-1355995 1.0000 100 chrIV:1359423-1359971 1.0000 100 chrIV:1400891-1401960 1.0000 100 chrIV:1450259-1450589 1.0000 100 chrIV:1450748-1451213 1.0000 100 chrIV:1461498-1461848 1.0000 100 chrIX:68190-68769 1.0000 100 chrIX:99617-100029 1.0000 100 chrIX:174883-175527 1.0000 100 chrIX:183291-183695 1.0000 100 chrIX:197337-197911 1.0000 100 chrIX:210656-210891 1.0000 100 chrIX:248542-249001 1.0000 100 chrIX:254196-254564 1.0000 100 chrIX:257355-257759 1.0000 100 chrIX:299994-300511 1.0000 100 chrIX:315564-316598 1.0000 100 chrIX:316784-317910 1.0000 100 chrIX:324195-324597 1.0000 100 chrIX:325554-326071 1.0000 100 chrIX:336091-336672 1.0000 100 chrIX:370257-370580 1.0000 100 chrV:6191-6382 1.0000 100 chrV:53496-53970 1.0000 100 chrV:61187-62126 1.0000 100 chrV:67628-68801 1.0000 100 chrV:85119-85505 1.0000 100 chrV:86425-87479 1.0000 100 chrV:99761-100281 1.0000 100 chrV:117216-118302 1.0000 100 chrV:130972-131360 1.0000 100 chrV:134010-136083 1.0000 100 chrV:138471-139971 1.0000 100 chrV:140453-140912 1.0000 100 chrV:141079-141247 1.0000 100 chrV:176899-177401 1.0000 100 chrV:207357-207529 1.0000 100 chrV:249768-250534 1.0000 100 chrV:270046-270657 1.0000 100 chrV:288180-288781 1.0000 100 chrV:305811-307198 1.0000 100 chrV:311706-312271 1.0000 100 chrV:322011-322790 1.0000 100 chrV:354793-355368 1.0000 100 chrV:362123-362495 1.0000 100 chrV:396190-396578 1.0000 100 chrV:423080-423503 1.0000 100 chrV:431037-432071 1.0000 100 chrV:434409-435131 1.0000 100 chrV:435577-435934 1.0000 100 chrV:438489-438953 1.0000 100 chrV:441787-442686 1.0000 100 chrV:443106-443336 1.0000 100 chrV:469191-470502 1.0000 100 chrV:487101-487639 1.0000 100 chrV:492240-492431 1.0000 100 chrV:551012-551589 1.0000 100 chrVI:4530-4770 1.0000 100 chrVI:53256-54332 1.0000 100 chrVI:64174-65541 1.0000 100 chrVI:75222-75876 1.0000 100 chrVI:95474-95915 1.0000 100 chrVI:101364-102051 1.0000 100 chrVI:137238-137769 1.0000 100 chrVI:157897-158235 1.0000 100 chrVI:161999-162388 1.0000 100 chrVI:167231-167645 1.0000 100 chrVI:180661-181271 1.0000 100 chrVI:181431-181593 1.0000 100 chrVI:191188-191758 1.0000 100 chrVI:210425-211101 1.0000 100 chrVI:221369-222249 1.0000 100 chrVI:223268-224147 1.0000 100 chrVI:226353-226979 1.0000 100 chrVII:110126-110787 1.0000 100 chrVII:115268-115711 1.0000 100 chrVII:122038-122535 1.0000 100 chrVII:148205-149508 1.0000 100 chrVII:184902-185900 1.0000 100 chrVII:205308-205778 1.0000 100 chrVII:254143-254688 1.0000 100 chrVII:277011-277404 1.0000 100 chrVII:287127-287682 1.0000 100 chrVII:310459-312851 1.0000 100 chrVII:319216-320130 1.0000 100 chrVII:328412-329278 1.0000 100 chrVII:364897-366622 1.0000 100 chrVII:371224-371511 1.0000 100 chrVII:401442-401618 1.0000 100 chrVII:405461-406017 1.0000 100 chrVII:411639-412586 1.0000 100 chrVII:422734-423336 1.0000 100 chrVII:438291-438893 1.0000 100 chrVII:440575-441008 1.0000 100 chrVII:479529-482665 1.0000 100 chrVII:531387-531781 1.0000 100 chrVII:534145-535203 1.0000 100 chrVII:541712-542162 1.0000 100 chrVII:544410-544857 1.0000 100 chrVII:555144-555850 1.0000 100 chrVII:561485-561715 1.0000 100 chrVII:648773-649344 1.0000 100 chrVII:661524-661975 1.0000 100 chrVII:700274-701158 1.0000 100 chrVII:706929-707268 1.0000 100 chrVII:726374-726771 1.0000 100 chrVII:730957-731388 1.0000 100 chrVII:736188-737086 1.0000 100 chrVII:738901-739604 1.0000 100 chrVII:774158-774714 1.0000 100 chrVII:779401-779752 1.0000 100 chrVII:788322-788750 1.0000 100 chrVII:794262-794514 1.0000 100 chrVII:806585-807614 1.0000 100 chrVII:823348-823722 1.0000 100 chrVII:828432-828987 1.0000 100 chrVII:845292-846087 1.0000 100 chrVII:856732-857658 1.0000 100 chrVII:876193-876541 1.0000 100 chrVII:878592-879038 1.0000 100 chrVII:882786-883852 1.0000 100 chrVII:930877-931161 1.0000 100 chrVII:1000364-1000596 1.0000 100 chrVII:1004031-1004406 1.0000 100 chrVIII:35302-36069 1.0000 100 chrVIII:62438-63151 1.0000 100 chrVIII:74901-75892 1.0000 100 chrVIII:103590-104510 1.0000 100 chrVIII:115939-116301 1.0000 100 chrVIII:125882-126328 1.0000 100 chrVIII:132800-133327 1.0000 100 chrVIII:134072-134740 1.0000 100 chrVIII:145779-146780 1.0000 100 chrVIII:148985-149245 1.0000 100 chrVIII:173571-176047 1.0000 100 chrVIII:237751-238091 1.0000 100 chrVIII:296665-297232 1.0000 100 chrVIII:358286-358771 1.0000 100 chrVIII:382653-383354 1.0000 100 chrVIII:388690-389207 1.0000 100 chrVIII:451354-453112 1.0000 100 chrVIII:466902-467151 1.0000 100 chrVIII:475478-475910 1.0000 100 chrVIII:505812-506360 1.0000 100 chrVIII:555726-556531 1.0000 100 chrVIII:556854-557192 1.0000 100 chrX:59013-59416 1.0000 100 chrX:73358-74560 1.0000 100 chrX:75234-76487 1.0000 100 chrX:89897-90451 1.0000 100 chrX:115700-116249 1.0000 100 chrX:157436-157909 1.0000 100 chrX:196537-197526 1.0000 100 chrX:204515-205050 1.0000 100 chrX:233705-234105 1.0000 100 chrX:354161-354533 1.0000 100 chrX:355203-355736 1.0000 100 chrX:374196-374848 1.0000 100 chrX:378123-378585 1.0000 100 chrX:390917-391624 1.0000 100 chrX:391803-392129 1.0000 100 chrX:396578-396946 1.0000 100 chrX:414785-416383 1.0000 100 chrX:422722-423528 1.0000 100 chrX:424284-424729 1.0000 100 chrX:517638-518092 1.0000 100 chrX:523911-524439 1.0000 100 chrX:531605-532273 1.0000 100 chrX:538523-538734 1.0000 100 chrX:540707-542559 1.0000 100 chrX:542765-543264 1.0000 100 chrX:545408-545770 1.0000 100 chrX:607712-608160 1.0000 100 chrX:617684-618140 1.0000 100 chrX:651248-651604 1.0000 100 chrX:652023-652590 1.0000 100 chrX:690571-690938 1.0000 100 chrX:703246-703643 1.0000 100 chrX:745098-745749 1.0000 100 chrXI:775-1101 1.0000 100 chrXI:46711-47001 1.0000 100 chrXI:67795-68046 1.0000 100 chrXI:74392-74798 1.0000 100 chrXI:84025-84410 1.0000 100 chrXI:99751-99953 1.0000 100 chrXI:107626-109646 1.0000 100 chrXI:140807-141469 1.0000 100 chrXI:141811-142823 1.0000 100 chrXI:158200-158641 1.0000 100 chrXI:162433-162683 1.0000 100 chrXI:202520-203240 1.0000 100 chrXI:219627-220113 1.0000 100 chrXI:302693-303333 1.0000 100 chrXI:307944-308453 1.0000 100 chrXI:311509-313996 1.0000 100 chrXI:379306-379913 1.0000 100 chrXI:382188-382455 1.0000 100 chrXI:431372-431651 1.0000 100 chrXI:457585-459296 1.0000 100 chrXI:490728-491213 1.0000 100 chrXI:512611-513517 1.0000 100 chrXI:517785-518070 1.0000 100 chrXI:519528-520647 1.0000 100 chrXI:578722-579327 1.0000 100 chrXI:614158-614411 1.0000 100 chrXI:618745-619316 1.0000 100 chrXI:666491-666801 1.0000 100 chrXII:52-238 1.0000 100 chrXII:47863-49517 1.0000 100 chrXII:64319-65235 1.0000 100 chrXII:81521-83309 1.0000 100 chrXII:83561-83727 1.0000 100 chrXII:92413-93211 1.0000 100 chrXII:95569-95867 1.0000 100 chrXII:110034-110936 1.0000 100 chrXII:167755-168241 1.0000 100 chrXII:214662-215070 1.0000 100 chrXII:232222-234088 1.0000 100 chrXII:241622-242021 1.0000 100 chrXII:261110-262668 1.0000 100 chrXII:262849-263310 1.0000 100 chrXII:282604-283562 1.0000 100 chrXII:366046-366539 1.0000 100 chrXII:368768-369530 1.0000 100 chrXII:369698-370118 1.0000 100 chrXII:370594-370938 1.0000 100 chrXII:374205-374671 1.0000 100 chrXII:424178-424499 1.0000 100 chrXII:426916-427442 1.0000 100 chrXII:448524-448993 1.0000 100 chrXII:459602-460729 1.0000 100 chrXII:498298-499949 1.0000 100 chrXII:521455-522443 1.0000 100 chrXII:592102-592723 1.0000 100 chrXII:605160-605640 1.0000 100 chrXII:628148-629113 1.0000 100 chrXII:636767-639937 1.0000 100 chrXII:656843-657199 1.0000 100 chrXII:673555-674253 1.0000 100 chrXII:687664-687906 1.0000 100 chrXII:710609-711482 1.0000 100 chrXII:713139-713634 1.0000 100 chrXII:732007-732318 1.0000 100 chrXII:734601-734947 1.0000 100 chrXII:780989-781891 1.0000 100 chrXII:783911-784514 1.0000 100 chrXII:793723-793997 1.0000 100 chrXII:796131-797486 1.0000 100 chrXII:805586-806809 1.0000 100 chrXII:818505-819139 1.0000 100 chrXII:837987-839245 1.0000 100 chrXII:875189-877029 1.0000 100 chrXII:897375-898210 1.0000 100 chrXII:903324-903649 1.0000 100 chrXII:921724-923409 1.0000 100 chrXII:930545-931630 1.0000 100 chrXII:932055-932545 1.0000 100 chrXII:962838-963341 1.0000 100 chrXII:975794-976102 1.0000 100 chrXII:1018110-1019878 1.0000 100 chrXII:1028179-1028583 1.0000 100 chrXII:1051969-1052225 1.0000 100 chrXIII:91392-92271 1.0000 100 chrXIII:131568-132111 1.0000 100 chrXIII:145886-146274 1.0000 100 chrXIII:168273-169012 1.0000 100 chrXIII:195949-196301 1.0000 100 chrXIII:224068-224501 1.0000 100 chrXIII:225154-225759 1.0000 100 chrXIII:259026-259442 1.0000 100 chrXIII:290546-291243 1.0000 100 chrXIII:296758-298273 1.0000 100 chrXIII:298551-298902 1.0000 100 chrXIII:302872-303733 1.0000 100 chrXIII:320993-321435 1.0000 100 chrXIII:352085-352639 1.0000 100 chrXIII:362937-364772 1.0000 100 chrXIII:372194-372764 1.0000 100 chrXIII:378864-379625 1.0000 100 chrXIII:420348-420792 1.0000 100 chrXIII:463428-463830 1.0000 100 chrXIII:480416-480872 1.0000 100 chrXIII:499462-500670 1.0000 100 chrXIII:504655-505176 1.0000 100 chrXIII:551019-551810 1.0000 100 chrXIII:552521-553412 1.0000 100 chrXIII:572632-573252 1.0000 100 chrXIII:586358-587427 1.0000 100 chrXIII:650544-651124 1.0000 100 chrXIII:731570-732458 1.0000 100 chrXIII:747688-748140 1.0000 100 chrXIII:753233-755274 1.0000 100 chrXIII:768180-768450 1.0000 100 chrXIII:808099-808525 1.0000 100 chrXIII:837719-838206 1.0000 100 chrXIII:873533-874189 1.0000 100 chrXIV:63098-63959 1.0000 100 chrXIV:95992-96471 1.0000 100 chrXIV:102573-103106 1.0000 100 chrXIV:104615-105128 1.0000 100 chrXIV:241389-241815 1.0000 100 chrXIV:241976-242573 1.0000 100 chrXIV:302681-303928 1.0000 100 chrXIV:330682-331260 1.0000 100 chrXIV:374651-375089 1.0000 100 chrXIV:413604-414899 1.0000 100 chrXIV:442852-443243 1.0000 100 chrXIV:443408-444788 1.0000 100 chrXIV:495174-495877 1.0000 100 chrXIV:518804-519145 1.0000 100 chrXIV:546572-547362 1.0000 100 chrXIV:560317-560790 1.0000 100 chrXIV:568054-568472 1.0000 100 chrXIV:569500-570056 1.0000 100 chrXIV:602060-602554 1.0000 100 chrXIV:631696-632018 1.0000 100 chrXIV:632493-632864 1.0000 100 chrXIV:725852-726360 1.0000 100 chrXIV:783739-784322 1.0000 100 chrXV:79722-80151 1.0000 100 chrXV:92748-93816 1.0000 100 chrXV:94089-94794 1.0000 100 chrXV:109528-110641 1.0000 100 chrXV:110852-111203 1.0000 100 chrXV:113540-113885 1.0000 100 chrXV:159242-159423 1.0000 100 chrXV:159585-160135 1.0000 100 chrXV:161103-161717 1.0000 100 chrXV:167972-168474 1.0000 100 chrXV:216283-216703 1.0000 100 chrXV:226533-226881 1.0000 100 chrXV:228097-228530 1.0000 100 chrXV:253812-254095 1.0000 100 chrXV:254295-254610 1.0000 100 chrXV:274239-275099 1.0000 100 chrXV:282015-282361 1.0000 100 chrXV:282547-283712 1.0000 100 chrXV:287159-288421 1.0000 100 chrXV:300890-302302 1.0000 100 chrXV:340147-340605 1.0000 100 chrXV:353924-354312 1.0000 100 chrXV:408571-409623 1.0000 100 chrXV:411627-412281 1.0000 100 chrXV:438469-440032 1.0000 100 chrXV:444649-445794 1.0000 100 chrXV:445963-446216 1.0000 100 chrXV:464282-464850 1.0000 100 chrXV:487435-487731 1.0000 100 chrXV:504888-505493 1.0000 100 chrXV:571728-572734 1.0000 100 chrXV:594307-594614 1.0000 100 chrXV:639158-639466 1.0000 100 chrXV:663448-664774 1.0000 100 chrXV:678263-679158 1.0000 100 chrXV:710073-710507 1.0000 100 chrXV:779681-780952 1.0000 100 chrXV:854047-854749 1.0000 100 chrXV:866510-867422 1.0000 100 chrXV:881742-882390 1.0000 100 chrXV:900314-901207 1.0000 100 chrXV:968105-968471 1.0000 100 chrXV:976376-976620 1.0000 100 chrXV:978815-979159 1.0000 100 chrXV:979782-981310 1.0000 100 chrXV:1003989-1004384 1.0000 100 chrXV:1025692-1026068 1.0000 100 chrXV:1027708-1029439 1.0000 100 chrXVI:55851-56350 1.0000 100 chrXVI:75311-76946 1.0000 100 chrXVI:135178-135833 1.0000 100 chrXVI:188356-188940 1.0000 100 chrXVI:210012-210456 1.0000 100 chrXVI:279969-280209 1.0000 100 chrXVI:280564-281336 1.0000 100 chrXVI:281602-282291 1.0000 100 chrXVI:302654-304019 1.0000 100 chrXVI:338736-339139 1.0000 100 chrXVI:378660-378998 1.0000 100 chrXVI:406188-407768 1.0000 100 chrXVI:432527-434102 1.0000 100 chrXVI:435672-436210 1.0000 100 chrXVI:519727-520547 1.0000 100 chrXVI:559986-560458 1.0000 100 chrXVI:571551-571820 1.0000 100 chrXVI:571997-572523 1.0000 100 chrXVI:578571-580279 1.0000 100 chrXVI:581851-582327 1.0000 100 chrXVI:622282-622857 1.0000 100 chrXVI:627257-627933 1.0000 100 chrXVI:689373-689877 1.0000 100 chrXVI:699768-700675 1.0000 100 chrXVI:731626-732773 1.0000 100 chrXVI:744093-744524 1.0000 100 chrXVI:768448-768616 1.0000 100 chrXVI:768822-769493 1.0000 100 chrXVI:775646-776063 1.0000 100 chrXVI:794486-794818 1.0000 100 chrXVI:794981-795162 1.0000 100 chrXVI:810576-810868 1.0000 100 chrXVI:819343-819824 1.0000 100 chrXVI:856800-857120 1.0000 100 chrXVI:860116-860685 1.0000 100 chrXVI:879428-880536 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--ACE2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--ACE2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--ACE2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 490 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 49000 N= 490 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.298 C 0.202 G 0.202 T 0.298 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--ACE2/background): A 0.305 C 0.195 G 0.195 T 0.305 ******************************************************************************** ******************************************************************************** MOTIF RRGRTCMBSGGTTCGATYCCS MEME-1 width = 21 sites = 99 llr = 1582 E-value = 4.4e-301 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGATYCCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 46232:3:12::::2a2::1: pos.-specific C 111:17533::::a::24a75 probability G 53761:2357a:::8:2:::4 matrix T 1:::62:311:aa:::55:21 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 **** * * Relative 1.4 ****** * Entropy 1.2 * ****** * (23.1 bits) 0.9 ** * ******* **** 0.7 ** * ******** **** 0.5 **************** **** 0.2 **************** **** 0.0 --------------------- Multilevel GAGGTCCGGGGTTCGATTCCC consensus AG A TACC A CC TG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGATYCCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631696-632018 - 49 6.80e-13 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrIII:123386-123811 - 39 6.80e-13 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrXII:214662-215070 - 77 8.15e-11 GAA GAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrXVI:819343-819824 + 39 1.92e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXII:1051969-1052225 - 34 1.92e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrV:551012-551589 - 45 1.92e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrV:443106-443336 - 41 1.92e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrIX:183291-183695 - 7 1.92e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAG chrII:197308-197850 + 8 1.92e-10 TAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXVI:210012-210456 - 18 2.28e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrXV:464282-464850 + 5 2.28e-10 GCGA GAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrXIII:195949-196301 - 3 2.28e-10 AAGCATGCGA GAGGCCCTGGGTTCAATTCCC AG chrX:115700-116249 - 25 2.28e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrVIII:388690-389207 - 5 2.28e-10 AAGCATGCGA GAGGCCCTGGGTTCAATTCCC AGCT chrVII:541712-542162 + 4 2.28e-10 CGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrVII:401442-401618 - 57 2.28e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:487101-487639 - 21 2.28e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:176899-177401 + 40 2.28e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrIX:197337-197911 + 59 2.28e-10 TTCTCACCGT GGAGACCGGGGTTCGACTCCC CGCTTCGGAG chrIV:1016952-1017515 - 34 2.28e-10 TTCTCACCGT GGAGACCGGGGTTCGACTCCC CGCTTCGGAG chrXVI:581851-582327 + 65 3.16e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXIII:480416-480872 - 37 3.16e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:122038-122535 + 75 3.16e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACA chrV:435577-435934 - 57 3.16e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIX:299994-300511 - 36 3.16e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1351900-1353076 - 38 3.16e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1201522-1202003 + 80 3.16e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC chrVIII:475478-475910 - 72 4.30e-10 ACACGGCA AAGGTCCCGAGTTCGATCCTC GGTTGGAACA chrIV:1075291-1075754 - 10 4.30e-10 TCACACGGCA AAGGTCCCGAGTTCGATCCTC GGTTGGAAC chrXVI:856800-857120 + 34 7.82e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXIV:95992-96471 - 70 7.82e-10 CTTCCAAGGT GGGGACACGGGTTCGATTCTC GTACCGCTCA chrVIII:145779-146780 - 23 7.82e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrVII:774158-774714 + 5 7.82e-10 GGGA GAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXVI:860116-860685 + 69 1.38e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXV:282015-282361 + 66 1.38e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrX:396578-396946 - 24 1.38e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrVII:845292-846087 + 50 1.38e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrVI:180661-181271 - 68 1.38e-09 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXIII:747688-748140 - 38 2.70e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXIII:131568-132111 - 46 2.70e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrX:374196-374848 - 44 2.70e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:828432-828987 - 74 2.70e-09 AATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrII:405673-406223 + 21 2.70e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXI:578722-579327 + 56 3.49e-09 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXVI:622282-622857 - 31 6.46e-09 AAGTTATCTG GAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrXVI:559986-560458 - 36 6.46e-09 AAGTTATCTG GAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrXIII:352085-352639 + 28 6.46e-09 AAGTTATCTG GAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrVIII:358286-358771 - 10 6.46e-09 AAGTTATCTG GAGGTCCTGTGTTCGATCCAC AGAATTCGC chrIV:1095164-1095657 - 20 6.46e-09 AAGATATCTG GAGGTCCTGTGTTCGATCCAC AGAGTTCGCA chrII:36249-36607 + 80 6.46e-09 AAGTCATCTG GAGGTCCTGTGTTCGATCCAC chrVIII:134072-134740 + 6 8.18e-09 ATCCG GACAACCCCGGTTCGAATCCG GGTAGGACCT chrIII:168130-168552 - 20 8.18e-09 TTTTGATCCG GACAACCCCGGTTCGAATCCG GGTAGGACCT chrX:538523-538734 + 18 9.21e-09 TCCTAAGGAG AAGACTGCGGGTTCGAGTCCC GTACGGAACG chrXIV:104615-105128 + 26 1.16e-08 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrVIII:115939-116301 - 47 1.16e-08 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:325554-326071 + 28 1.16e-08 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrII:266209-266658 + 37 1.16e-08 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXIII:420348-420792 - 78 1.30e-08 AG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXIII:372194-372764 - 26 1.30e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXI:307944-308453 - 6 1.30e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGA chrVII:823348-823722 + 40 1.30e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrV:438489-438953 + 72 1.30e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAAT chrVII:700274-701158 + 60 1.81e-08 TGATCTCTTC GGAGGCGCGGGTTCAAACCCC GCGGGTATCA chrXVI:810576-810868 + 47 7.46e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXIV:632493-632864 + 14 7.46e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrVII:730957-731388 + 58 7.46e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrVI:137238-137769 - 43 7.46e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXIII:837719-838206 + 74 8.19e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGC CCCCGG chrX:542765-543264 - 2 8.19e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGC C chrX:354161-354533 + 5 8.19e-08 TCTT GAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrXV:976376-976620 + 15 8.99e-08 TCATAATCTG AAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXIII:572632-573252 - 1 8.99e-08 TCATAATCTG AAGGTCGAGAGTTCGAACCTC chrXIII:463428-463830 + 16 1.18e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrXII:426916-427442 + 44 1.18e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrX:355203-355736 + 78 1.18e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CG chrX:204515-205050 + 44 1.18e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrVII:544410-544857 - 4 1.18e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGT chrIX:336091-336672 - 28 1.18e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrXI:302693-303333 + 30 1.29e-07 TTGCAATCGA AGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrVII:287127-287682 - 6 1.29e-07 TTGCAATCGA AGGGTTGCAGGTTCAATTCCT GTCCG chrXII:374205-374671 + 9 1.99e-07 CGAACCAG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrVIII:466902-467151 + 55 1.99e-07 TTGTAATGCA AAGGTCGCTAGTTCAATTCTG GCAGGTGGCA chrV:492240-492431 - 77 1.99e-07 CAG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrXVI:744093-744524 + 67 3.01e-07 TTGTAATGCA AAGGTCGTTAGTTCAATTCTG ACAGGTGGCA chrIV:519657-519964 - 43 9.98e-07 AAGTTATTGA AGGATGCGAGGTTCGAACTCG CGCGGACAAC chrII:347399-347983 - 22 9.98e-07 ATATTACTGA AGGATGCGAGGTTCGAACTCG CGCGGACAAC chrII:9443-9884 - 30 9.98e-07 AAAATACTGA AGGATGCGAGGTTCGAACTCG CGCGGACAAC chrXVI:435672-436210 - 12 1.14e-06 TGCAAATCTG TTGGTCCTTAGTTCGATCCTG AGTGCGAGCT chrVII:706929-707268 - 70 1.14e-06 TGCAAATCTG TTGGTCCTTAGTTCGATCCTG AGTGCGAGCT chrXV:710073-710507 + 2 1.70e-06 T GATGTCCTCGGATCGAAACCG AGCGGCGCTA chrX:517638-518092 - 8 1.70e-06 TCATAACCCT GATGTCCTCGGATCGAAACCG AGCGGCG chrXII:732007-732318 + 48 2.48e-06 TGATATCTTC GGATGCAAGGGTTCGAATCCC TTAGCTCTCA chrXII:167755-168241 - 6 2.48e-06 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GCAGT chrVIII:132800-133327 - 23 2.48e-06 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrIV:437546-438175 + 13 2.48e-06 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrII:226973-227334 + 23 2.48e-06 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrVIII:62438-63151 + 52 3.75e-06 TTGTGGCCGA TGAAACCCTGGTTCGATTCTA GGAGATGGCA chrV:207357-207529 + 5 3.75e-06 CCGA TGAAACCCTGGTTCGATTCTA GGAGATGGCA chrXVI:188356-188940 + 22 1.35e-05 TGTTATCGTG CAAGCGCTGAGTTCGAAACGC TGTTTTGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGATYCCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631696-632018 6.8e-13 48_[-1]_31 chrIII:123386-123811 6.8e-13 38_[-1]_41 chrXII:214662-215070 8.1e-11 76_[-1]_3 chrXVI:819343-819824 1.9e-10 38_[+1]_41 chrXII:1051969-1052225 1.9e-10 33_[-1]_46 chrV:551012-551589 1.9e-10 44_[-1]_35 chrV:443106-443336 1.9e-10 40_[-1]_39 chrIX:183291-183695 1.9e-10 6_[-1]_73 chrII:197308-197850 1.9e-10 7_[+1]_72 chrXVI:210012-210456 2.3e-10 17_[-1]_62 chrXV:464282-464850 2.3e-10 4_[+1]_75 chrXIII:195949-196301 2.3e-10 2_[-1]_77 chrX:115700-116249 2.3e-10 24_[-1]_55 chrVIII:388690-389207 2.3e-10 4_[-1]_75 chrVII:541712-542162 2.3e-10 3_[+1]_76 chrVII:401442-401618 2.3e-10 56_[-1]_23 chrV:487101-487639 2.3e-10 20_[-1]_59 chrV:176899-177401 2.3e-10 39_[+1]_40 chrIX:197337-197911 2.3e-10 58_[+1]_21 chrIV:1016952-1017515 2.3e-10 33_[-1]_46 chrXVI:581851-582327 3.2e-10 64_[+1]_15 chrXIII:480416-480872 3.2e-10 36_[-1]_43 chrVII:122038-122535 3.2e-10 74_[+1]_5 chrV:435577-435934 3.2e-10 56_[-1]_23 chrIX:299994-300511 3.2e-10 35_[-1]_44 chrIV:1351900-1353076 3.2e-10 37_[-1]_42 chrIV:1201522-1202003 3.2e-10 79_[+1] chrVIII:475478-475910 4.3e-10 71_[-1]_8 chrIV:1075291-1075754 4.3e-10 9_[-1]_70 chrXVI:856800-857120 7.8e-10 33_[+1]_46 chrXIV:95992-96471 7.8e-10 69_[-1]_10 chrVIII:145779-146780 7.8e-10 22_[-1]_57 chrVII:774158-774714 7.8e-10 4_[+1]_75 chrXVI:860116-860685 1.4e-09 68_[+1]_11 chrXV:282015-282361 1.4e-09 65_[+1]_14 chrX:396578-396946 1.4e-09 23_[-1]_56 chrVII:845292-846087 1.4e-09 49_[+1]_30 chrVI:180661-181271 1.4e-09 67_[-1]_12 chrXIII:747688-748140 2.7e-09 37_[-1]_42 chrXIII:131568-132111 2.7e-09 45_[-1]_34 chrX:374196-374848 2.7e-09 43_[-1]_36 chrVII:828432-828987 2.7e-09 73_[-1]_6 chrII:405673-406223 2.7e-09 20_[+1]_59 chrXI:578722-579327 3.5e-09 55_[+1]_24 chrXVI:622282-622857 6.5e-09 30_[-1]_49 chrXVI:559986-560458 6.5e-09 35_[-1]_44 chrXIII:352085-352639 6.5e-09 27_[+1]_52 chrVIII:358286-358771 6.5e-09 9_[-1]_70 chrIV:1095164-1095657 6.5e-09 19_[-1]_60 chrII:36249-36607 6.5e-09 79_[+1] chrVIII:134072-134740 8.2e-09 5_[+1]_74 chrIII:168130-168552 8.2e-09 19_[-1]_60 chrX:538523-538734 9.2e-09 17_[+1]_62 chrXIV:104615-105128 1.2e-08 25_[+1]_54 chrVIII:115939-116301 1.2e-08 46_[-1]_33 chrIX:325554-326071 1.2e-08 27_[+1]_52 chrII:266209-266658 1.2e-08 36_[+1]_43 chrXIII:420348-420792 1.3e-08 77_[-1]_2 chrXIII:372194-372764 1.3e-08 25_[-1]_54 chrXI:307944-308453 1.3e-08 5_[-1]_74 chrVII:823348-823722 1.3e-08 39_[+1]_40 chrV:438489-438953 1.3e-08 71_[+1]_8 chrVII:700274-701158 1.8e-08 59_[+1]_20 chrXVI:810576-810868 7.5e-08 46_[+1]_33 chrXIV:632493-632864 7.5e-08 13_[+1]_66 chrVII:730957-731388 7.5e-08 57_[+1]_22 chrVI:137238-137769 7.5e-08 42_[-1]_37 chrXIII:837719-838206 8.2e-08 73_[+1]_6 chrX:542765-543264 8.2e-08 1_[-1]_78 chrX:354161-354533 8.2e-08 4_[+1]_75 chrXV:976376-976620 9e-08 14_[+1]_65 chrXIII:572632-573252 9e-08 [-1]_79 chrXIII:463428-463830 1.2e-07 15_[+1]_64 chrXII:426916-427442 1.2e-07 43_[+1]_36 chrX:355203-355736 1.2e-07 77_[+1]_2 chrX:204515-205050 1.2e-07 43_[+1]_36 chrVII:544410-544857 1.2e-07 3_[-1]_76 chrIX:336091-336672 1.2e-07 27_[-1]_52 chrXI:302693-303333 1.3e-07 29_[+1]_50 chrVII:287127-287682 1.3e-07 5_[-1]_74 chrXII:374205-374671 2e-07 8_[+1]_71 chrVIII:466902-467151 2e-07 54_[+1]_25 chrV:492240-492431 2e-07 76_[-1]_3 chrXVI:744093-744524 3e-07 66_[+1]_13 chrIV:519657-519964 1e-06 42_[-1]_37 chrII:347399-347983 1e-06 21_[-1]_58 chrII:9443-9884 1e-06 29_[-1]_50 chrXVI:435672-436210 1.1e-06 11_[-1]_68 chrVII:706929-707268 1.1e-06 69_[-1]_10 chrXV:710073-710507 1.7e-06 1_[+1]_78 chrX:517638-518092 1.7e-06 7_[-1]_72 chrXII:732007-732318 2.5e-06 47_[+1]_32 chrXII:167755-168241 2.5e-06 5_[-1]_74 chrVIII:132800-133327 2.5e-06 22_[-1]_57 chrIV:437546-438175 2.5e-06 12_[+1]_67 chrII:226973-227334 2.5e-06 22_[+1]_57 chrVIII:62438-63151 3.7e-06 51_[+1]_28 chrV:207357-207529 3.7e-06 4_[+1]_75 chrXVI:188356-188940 1.3e-05 21_[+1]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGATYCCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRGRTCMBSGGTTCGATYCCS width=21 seqs=99 chrXIV:631696-632018 ( 49) GAGGTCCCGGGTTCGAGTCCC 1 chrIII:123386-123811 ( 39) GAGGTCCCGGGTTCGAGTCCC 1 chrXII:214662-215070 ( 77) GAGGTCATCGGTTCGATTCCG 1 chrXVI:819343-819824 ( 39) GGGATCAGCGGTTCGATCCCG 1 chrXII:1051969-1052225 ( 34) GGGATCAGCGGTTCGATCCCG 1 chrV:551012-551589 ( 45) GGGATCAGCGGTTCGATCCCG 1 chrV:443106-443336 ( 41) GGGATCAGCGGTTCGATCCCG 1 chrIX:183291-183695 ( 7) GGGATCAGCGGTTCGATCCCG 1 chrII:197308-197850 ( 8) GGGATCAGCGGTTCGATCCCG 1 chrXVI:210012-210456 ( 18) GGAGACCGGGGTTCGACTCCC 1 chrXV:464282-464850 ( 5) GAGGCCCTGGGTTCAATTCCC 1 chrXIII:195949-196301 ( 3) GAGGCCCTGGGTTCAATTCCC 1 chrX:115700-116249 ( 25) GGAGACCGGGGTTCGACTCCC 1 chrVIII:388690-389207 ( 5) GAGGCCCTGGGTTCAATTCCC 1 chrVII:541712-542162 ( 4) GGAGACCGGGGTTCGACTCCC 1 chrVII:401442-401618 ( 57) GGAGACCGGGGTTCGACTCCC 1 chrV:487101-487639 ( 21) GGAGACCGGGGTTCGACTCCC 1 chrV:176899-177401 ( 40) GGAGACCGGGGTTCGACTCCC 1 chrIX:197337-197911 ( 59) GGAGACCGGGGTTCGACTCCC 1 chrIV:1016952-1017515 ( 34) GGAGACCGGGGTTCGACTCCC 1 chrXVI:581851-582327 ( 65) AAGGTTAGGGGTTCGAGCCCC 1 chrXIII:480416-480872 ( 37) AAGGTTAGGGGTTCGAGCCCC 1 chrVII:122038-122535 ( 75) AAGGTTAGGGGTTCGAGCCCC 1 chrV:435577-435934 ( 57) AAGGTTAGGGGTTCGAGCCCC 1 chrIX:299994-300511 ( 36) AAGGTTAGGGGTTCGAGCCCC 1 chrIV:1351900-1353076 ( 38) AAGGTTAGGGGTTCGAGCCCC 1 chrIV:1201522-1202003 ( 80) AAGGTTAGGGGTTCGAGCCCC 1 chrVIII:475478-475910 ( 72) AAGGTCCCGAGTTCGATCCTC 1 chrIV:1075291-1075754 ( 10) AAGGTCCCGAGTTCGATCCTC 1 chrXVI:856800-857120 ( 34) GAGGTCTCCGGTTCGATTCCG 1 chrXIV:95992-96471 ( 70) GGGGACACGGGTTCGATTCTC 1 chrVIII:145779-146780 ( 23) GAGGTCTCCGGTTCGATTCCG 1 chrVII:774158-774714 ( 5) GAGGTCTCCGGTTCGATTCCG 1 chrXVI:860116-860685 ( 69) TGGGCCCCCGGTTCGATTCCG 1 chrXV:282015-282361 ( 66) TGGGCCCCCGGTTCGATTCCG 1 chrX:396578-396946 ( 24) TGGGCCCCCGGTTCGATTCCG 1 chrVII:845292-846087 ( 50) TGGGCCCCCGGTTCGATTCCG 1 chrVI:180661-181271 ( 68) TGGGCCCCCGGTTCGATTCCG 1 chrXIII:747688-748140 ( 38) AAGATTATGGGTTCGACCCCC 1 chrXIII:131568-132111 ( 46) AAGATTATGGGTTCGACCCCC 1 chrX:374196-374848 ( 44) AAGATTATGGGTTCGACCCCC 1 chrVII:828432-828987 ( 74) AAGATTATGGGTTCGACCCCC 1 chrII:405673-406223 ( 21) AAGATTATGGGTTCGACCCCC 1 chrXI:578722-579327 ( 56) AATGTCAGGGGTTCGAGCCCC 1 chrXVI:622282-622857 ( 31) GAGGTCCTGTGTTCGATCCAC 1 chrXVI:559986-560458 ( 36) GAGGTCCTGTGTTCGATCCAC 1 chrXIII:352085-352639 ( 28) GAGGTCCTGTGTTCGATCCAC 1 chrVIII:358286-358771 ( 10) GAGGTCCTGTGTTCGATCCAC 1 chrIV:1095164-1095657 ( 20) GAGGTCCTGTGTTCGATCCAC 1 chrII:36249-36607 ( 80) GAGGTCCTGTGTTCGATCCAC 1 chrVIII:134072-134740 ( 6) GACAACCCCGGTTCGAATCCG 1 chrIII:168130-168552 ( 20) GACAACCCCGGTTCGAATCCG 1 chrX:538523-538734 ( 18) AAGACTGCGGGTTCGAGTCCC 1 chrXIV:104615-105128 ( 26) GAGATCATCGGTTCAAATCCG 1 chrVIII:115939-116301 ( 47) GAGATCATCGGTTCAAATCCG 1 chrIX:325554-326071 ( 28) GAGATCATCGGTTCAAATCCG 1 chrII:266209-266658 ( 37) GAGATCATCGGTTCAAATCCG 1 chrXIII:420348-420792 ( 78) AACGTCCCCAGTTCGATCCTG 1 chrXIII:372194-372764 ( 26) AACGTCCCCAGTTCGATCCTG 1 chrXI:307944-308453 ( 6) AACGTCCCCAGTTCGATCCTG 1 chrVII:823348-823722 ( 40) AACGTCCCCAGTTCGATCCTG 1 chrV:438489-438953 ( 72) AACGTCCCCAGTTCGATCCTG 1 chrVII:700274-701158 ( 60) GGAGGCGCGGGTTCAAACCCC 1 chrXVI:810576-810868 ( 47) AAGATCGTGAGTTCAACCCTC 1 chrXIV:632493-632864 ( 14) AAGATCGTGAGTTCAACCCTC 1 chrVII:730957-731388 ( 58) AAGATCGTGAGTTCAACCCTC 1 chrVI:137238-137769 ( 43) AAGATCGTGAGTTCAACCCTC 1 chrXIII:837719-838206 ( 74) GAGATCGGGCGTTCGACTCGC 1 chrX:542765-543264 ( 2) GAGATCGGGCGTTCGACTCGC 1 chrX:354161-354533 ( 5) GAGATCGGGCGTTCGACTCGC 1 chrXV:976376-976620 ( 15) AAGGTCGAGAGTTCGAACCTC 1 chrXIII:572632-573252 ( 1) AAGGTCGAGAGTTCGAACCTC 1 chrXIII:463428-463830 ( 16) CCAGATCGGGGTTCAATTCCC 1 chrXII:426916-427442 ( 44) CCAGATCGGGGTTCAATTCCC 1 chrX:355203-355736 ( 78) CCAGATCGGGGTTCAATTCCC 1 chrX:204515-205050 ( 44) CCAGATCGGGGTTCAATTCCC 1 chrVII:544410-544857 ( 4) CCAGATCGGGGTTCAATTCCC 1 chrIX:336091-336672 ( 28) CCAGATCGGGGTTCAATTCCC 1 chrXI:302693-303333 ( 30) AGGGTTGCAGGTTCAATTCCT 1 chrVII:287127-287682 ( 6) AGGGTTGCAGGTTCAATTCCT 1 chrXII:374205-374671 ( 9) AAGATTCCAGGTTCAAGTCCT 1 chrVIII:466902-467151 ( 55) AAGGTCGCTAGTTCAATTCTG 1 chrV:492240-492431 ( 77) AAGATTCCAGGTTCAAGTCCT 1 chrXVI:744093-744524 ( 67) AAGGTCGTTAGTTCAATTCTG 1 chrIV:519657-519964 ( 43) AGGATGCGAGGTTCGAACTCG 1 chrII:347399-347983 ( 22) AGGATGCGAGGTTCGAACTCG 1 chrII:9443-9884 ( 30) AGGATGCGAGGTTCGAACTCG 1 chrXVI:435672-436210 ( 12) TTGGTCCTTAGTTCGATCCTG 1 chrVII:706929-707268 ( 70) TTGGTCCTTAGTTCGATCCTG 1 chrXV:710073-710507 ( 2) GATGTCCTCGGATCGAAACCG 1 chrX:517638-518092 ( 8) GATGTCCTCGGATCGAAACCG 1 chrXII:732007-732318 ( 48) GGATGCAAGGGTTCGAATCCC 1 chrXII:167755-168241 ( 6) GCCCGCGCAGGTTCGAGTCCT 1 chrVIII:132800-133327 ( 23) GCCCGCGCAGGTTCGAGTCCT 1 chrIV:437546-438175 ( 13) GCCCGCGCAGGTTCGAGTCCT 1 chrII:226973-227334 ( 23) GCCCGCGCAGGTTCGAGTCCT 1 chrVIII:62438-63151 ( 52) TGAAACCCTGGTTCGATTCTA 1 chrV:207357-207529 ( 5) TGAAACCCTGGTTCGATTCTA 1 chrXVI:188356-188940 ( 22) CAAGCGCTGAGTTCGAAACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGATYCCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 39200 bayes= 10.5461 E= 4.4e-301 25 -146 129 -175 94 -95 59 -392 -67 -81 178 -333 8 -227 169 -491 -67 -95 -168 108 -1327 190 -227 -39 -22 140 -2 -333 -333 78 82 -6 -146 54 149 -233 -75 -268 190 -233 -1327 -1327 236 -1327 -392 -1327 -1327 168 -1327 -1327 -1327 171 -1327 236 -1327 -1327 -33 -1327 196 -1327 171 -1327 -1327 -1327 -92 5 -18 61 -333 119 -1327 78 -1327 232 -1327 -333 -233 184 -227 -60 -392 149 86 -192 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGATYCCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 99 E= 4.4e-301 0.363636 0.070707 0.474747 0.090909 0.585859 0.101010 0.292929 0.020202 0.191919 0.111111 0.666667 0.030303 0.323232 0.040404 0.626263 0.010101 0.191919 0.101010 0.060606 0.646465 0.000000 0.727273 0.040404 0.232323 0.262626 0.515152 0.191919 0.030303 0.030303 0.333333 0.343434 0.292929 0.111111 0.282828 0.545455 0.060606 0.181818 0.030303 0.727273 0.060606 0.000000 0.000000 1.000000 0.000000 0.020202 0.000000 0.000000 0.979798 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.242424 0.000000 0.757576 0.000000 1.000000 0.000000 0.000000 0.000000 0.161616 0.202020 0.171717 0.464646 0.030303 0.444444 0.000000 0.525253 0.000000 0.969697 0.000000 0.030303 0.060606 0.696970 0.040404 0.202020 0.020202 0.545455 0.353535 0.080808 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGATYCCS MEME-1 regular expression -------------------------------------------------------------------------------- [GA][AG]G[GA]T[CT][CA][GCT][GC]GGTTC[GA]A[TC][TC]C[CT][CG] -------------------------------------------------------------------------------- Time 228.72 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCYYWWMCCACTRVGCYAH MEME-2 width = 20 sites = 93 llr = 1241 E-value = 8.3e-173 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVGCYAH MEME-2 Description -------------------------------------------------------------------------------- Simplified A 21111355:2a::433::a4 pos.-specific C 54633114a6:8:23:a7:4 probability G 45221:2::2:::347:::: matrix T ::25563::::2a1:::3:2 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 * *** * * Entropy 1.2 * *** **** (19.2 bits) 0.9 * *** **** 0.7 ** ****** **** 0.5 *** * ****** ****** 0.2 ******************** 0.0 -------------------- Multilevel CGCTTTAACCACTAGGCCAC consensus GC CCATC A T GAA T A sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVGCYAH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrXV:274239-275099 - 60 1.01e-10 AGCAGGGCAT CGCCTTAACCACTCGGCCAC TGGGACACGA chrIV:1150693-1151160 + 40 1.01e-10 TAGCAGGCAT CGCCTTAACCACTCGGCCAC TGGGACTGAA chrXIII:259026-259442 + 30 4.01e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAC chrXII:167755-168241 + 52 4.01e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAT chrVIII:132800-133327 + 69 4.01e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCACTT chrXIII:320993-321435 + 30 6.55e-10 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCGATT chrXII:656843-657199 + 10 6.55e-10 CTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCAATT chrXI:219627-220113 - 81 6.55e-10 . CGCGCTACCGACTACGCCAC ACGCCCTATT chrVIII:145779-146780 + 60 6.55e-10 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCTGAT chrV:288180-288781 + 69 1.05e-09 TCAAGTCTGT CGCCTTAACCACTCGGCCAT AGTGCCTATC chrIII:227758-228219 - 10 1.05e-09 TCGAGTCTCT CGCCTTAACCACTCGGCCAT AGTGCCATT chrX:617684-618140 - 63 2.49e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAA ACTCCCATTG chrXVI:819343-819824 - 2 5.47e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAA G chrXIV:602060-602554 - 61 5.47e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCATTG chrXII:1051969-1052225 + 72 5.47e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCATG chrV:443106-443336 + 79 5.47e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAA GA chrIX:183291-183695 + 45 5.47e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAGGA chrXI:84025-84410 - 47 7.90e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCATAC chrX:424284-424729 + 34 7.90e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCATCT chrXII:605160-605640 + 57 9.44e-09 ATAAGCACGA AGCTCTAACCACTGAGCTAC ACGAGCATTT chrVII:115268-115711 - 55 1.33e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAA CAAGGATGAG chrXV:340147-340605 + 20 2.17e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAACAGA chrXI:490728-491213 - 54 2.17e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAACAAG chrXVI:581851-582327 - 29 2.54e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTCTT chrXIII:480416-480872 + 74 2.54e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCT chrVII:122038-122535 - 39 2.54e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTAAT chrIX:299994-300511 + 73 2.54e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTA chrIV:1351900-1353076 + 75 2.54e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGC chrIV:1201522-1202003 - 44 2.54e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTATT chrIII:151125-151570 + 34 2.54e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTCTT chrXV:353924-354312 + 20 4.01e-08 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCAGTA chrXIV:374651-375089 - 55 1.05e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA GTCCGCTTAT chrVIII:358286-358771 + 66 1.05e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrVIII:237751-238091 + 43 1.05e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrVII:440575-441008 + 41 1.05e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCATAT chrIV:1095164-1095657 + 76 1.05e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA GTCCG chrII:36249-36607 - 26 1.05e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrXVI:810576-810868 - 10 1.20e-07 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCGCA chrXV:228097-228530 - 74 1.20e-07 GTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCTAAT chrVII:730957-731388 - 21 1.20e-07 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCTTTT chrIII:127533-127889 - 61 1.20e-07 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCATTT chrXVI:860116-860685 - 35 1.54e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTGT chrXVI:571997-572523 - 65 1.54e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCGAAG chrXV:282015-282361 - 32 1.54e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCGCTT chrX:396578-396946 + 59 1.54e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTAC chrVII:930877-931161 + 29 1.54e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTAC chrVII:845292-846087 - 16 1.54e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTGT chrXIV:442852-443243 - 15 2.47e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAA ACAACCACTT chrXIII:504655-505176 - 36 2.47e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAA ACAACCACTT chrXIII:372194-372764 + 64 2.47e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCAGGT chrXI:307944-308453 + 44 2.47e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCACTT chrX:378123-378585 - 62 2.47e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTATT chrVII:823348-823722 - 3 2.47e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GA chrVII:205308-205778 - 34 2.47e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAA ACAACCACTT chrV:438489-438953 - 35 2.47e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTAAT chrXIII:572632-573252 + 38 2.77e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTAC TGAAGCTGTC chrIV:1175582-1176094 - 47 2.77e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTAC TGAAGCTTTG chrVII:700274-701158 - 15 3.85e-07 TCGACCTGAC GCCTTAGACCACTCGGCCAG AGTACCAATT chrXIII:195949-196301 + 70 7.10e-07 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCTTGT chrVIII:388690-389207 + 72 7.10e-07 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCATG chrI:138947-139346 - 62 7.10e-07 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCGTAC chrXVI:744093-744524 - 32 1.34e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCTTTT chrVIII:466902-467151 - 20 1.34e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCTAAA chrVII:1004031-1004406 - 54 1.34e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCAAAC chrVII:661524-661975 - 56 1.34e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCAAAT chrXVI:338736-339139 + 7 1.73e-06 AGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTGCTA chrX:517638-518092 + 44 1.73e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTTAAC chrIII:149728-150131 - 47 1.73e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTCAAC chrX:745098-745749 - 73 2.03e-06 TCCAATTA CCCATATCCAACTCCACTAC CATTACCCTA chrXIII:837719-838206 - 22 2.37e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCAA chrX:542765-543264 + 55 2.37e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTATT chrVI:167231-167645 - 55 2.37e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCGT chrIV:768336-768913 + 28 2.75e-06 CGATGTCGTA ACCGTCAACAACTTCACCAA AGACAACATG chrVII:878592-879038 + 25 3.42e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrVII:287127-287682 + 76 3.42e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTT chrXV:110852-111203 + 31 3.92e-06 GGAAGGGTGG GATGATAACCACTACACTAA CCGCCCGGGT chrXVI:775646-776063 + 7 4.20e-06 AATCTG CTGCGCTACCACTGCGCCAT ACGAGCTTTT chrXVI:435672-436210 + 48 4.20e-06 TTGCAATCTG CTGCGCTACCACTGCGCCAT ACGAGCTTTT chrXIII:808099-808525 + 30 4.20e-06 CAGAACCGAA AGTGATAACCACTACACTAT AGGACCTTTT chrV:130972-131360 + 12 4.20e-06 CAAAACCGAA AGTGATAACCACTACACTAT AAAACCTCTT chrIII:168130-168552 + 56 4.20e-06 CAAAACCGAA AGTGATAACCACTACACTAT AGGACCAGGA chrII:350615-351050 - 51 4.20e-06 CAAAACCGAA AGTGATAACCACTACACTAT AAAACCCTTT chrXIII:747688-748140 + 74 4.48e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCT chrXI:162433-162683 + 25 4.48e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCTAAT chrX:374196-374848 + 80 4.48e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC G chrXII:426916-427442 - 9 6.52e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGATA chrX:355203-355736 - 43 6.52e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGAAGAA chrX:204515-205050 - 9 6.52e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGATT chrVII:544410-544857 + 40 6.52e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGAAGAA chrIX:336091-336672 + 64 6.52e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGATTTG chrIX:324195-324597 + 3 6.52e-06 CC CATTCTGACCATTAAACTAT CACGGAATAT chrII:405673-406223 - 68 6.52e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGAAGAA chrIV:1075291-1075754 + 47 1.92e-05 GTGAAGGCAA CGTGATAGCCGCTACACTAT TGGAACAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVGCYAH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:274239-275099 1e-10 59_[-2]_21 chrIV:1150693-1151160 1e-10 39_[+2]_41 chrXIII:259026-259442 4e-10 29_[+2]_51 chrXII:167755-168241 4e-10 51_[+2]_29 chrVIII:132800-133327 4e-10 68_[+2]_12 chrXIII:320993-321435 6.5e-10 29_[+2]_51 chrXII:656843-657199 6.5e-10 9_[+2]_71 chrXI:219627-220113 6.5e-10 80_[-2] chrVIII:145779-146780 6.5e-10 59_[+2]_21 chrV:288180-288781 1e-09 68_[+2]_12 chrIII:227758-228219 1e-09 9_[-2]_71 chrX:617684-618140 2.5e-09 62_[-2]_18 chrXVI:819343-819824 5.5e-09 1_[-2]_79 chrXIV:602060-602554 5.5e-09 60_[-2]_20 chrXII:1051969-1052225 5.5e-09 71_[+2]_9 chrV:443106-443336 5.5e-09 78_[+2]_2 chrIX:183291-183695 5.5e-09 44_[+2]_36 chrXI:84025-84410 7.9e-09 46_[-2]_34 chrX:424284-424729 7.9e-09 33_[+2]_47 chrXII:605160-605640 9.4e-09 56_[+2]_24 chrVII:115268-115711 1.3e-08 54_[-2]_26 chrXV:340147-340605 2.2e-08 19_[+2]_61 chrXI:490728-491213 2.2e-08 53_[-2]_27 chrXVI:581851-582327 2.5e-08 28_[-2]_52 chrXIII:480416-480872 2.5e-08 73_[+2]_7 chrVII:122038-122535 2.5e-08 38_[-2]_42 chrIX:299994-300511 2.5e-08 72_[+2]_8 chrIV:1351900-1353076 2.5e-08 74_[+2]_6 chrIV:1201522-1202003 2.5e-08 43_[-2]_37 chrIII:151125-151570 2.5e-08 33_[+2]_47 chrXV:353924-354312 4e-08 19_[+2]_61 chrXIV:374651-375089 1.1e-07 54_[-2]_26 chrVIII:358286-358771 1.1e-07 65_[+2]_15 chrVIII:237751-238091 1.1e-07 42_[+2]_38 chrVII:440575-441008 1.1e-07 40_[+2]_40 chrIV:1095164-1095657 1.1e-07 75_[+2]_5 chrII:36249-36607 1.1e-07 25_[-2]_55 chrXVI:810576-810868 1.2e-07 9_[-2]_71 chrXV:228097-228530 1.2e-07 73_[-2]_7 chrVII:730957-731388 1.2e-07 20_[-2]_60 chrIII:127533-127889 1.2e-07 60_[-2]_20 chrXVI:860116-860685 1.5e-07 34_[-2]_46 chrXVI:571997-572523 1.5e-07 64_[-2]_16 chrXV:282015-282361 1.5e-07 31_[-2]_49 chrX:396578-396946 1.5e-07 58_[+2]_22 chrVII:930877-931161 1.5e-07 28_[+2]_52 chrVII:845292-846087 1.5e-07 15_[-2]_65 chrXIV:442852-443243 2.5e-07 14_[-2]_66 chrXIII:504655-505176 2.5e-07 35_[-2]_45 chrXIII:372194-372764 2.5e-07 63_[+2]_17 chrXI:307944-308453 2.5e-07 43_[+2]_37 chrX:378123-378585 2.5e-07 61_[-2]_19 chrVII:823348-823722 2.5e-07 2_[-2]_78 chrVII:205308-205778 2.5e-07 33_[-2]_47 chrV:438489-438953 2.5e-07 34_[-2]_46 chrXIII:572632-573252 2.8e-07 37_[+2]_43 chrIV:1175582-1176094 2.8e-07 46_[-2]_34 chrVII:700274-701158 3.9e-07 14_[-2]_66 chrXIII:195949-196301 7.1e-07 69_[+2]_11 chrVIII:388690-389207 7.1e-07 71_[+2]_9 chrI:138947-139346 7.1e-07 61_[-2]_19 chrXVI:744093-744524 1.3e-06 31_[-2]_49 chrVIII:466902-467151 1.3e-06 19_[-2]_61 chrVII:1004031-1004406 1.3e-06 53_[-2]_27 chrVII:661524-661975 1.3e-06 55_[-2]_25 chrXVI:338736-339139 1.7e-06 6_[+2]_74 chrX:517638-518092 1.7e-06 43_[+2]_37 chrIII:149728-150131 1.7e-06 46_[-2]_34 chrX:745098-745749 2e-06 72_[-2]_8 chrXIII:837719-838206 2.4e-06 21_[-2]_59 chrX:542765-543264 2.4e-06 54_[+2]_26 chrVI:167231-167645 2.4e-06 54_[-2]_26 chrIV:768336-768913 2.8e-06 27_[+2]_53 chrVII:878592-879038 3.4e-06 24_[+2]_56 chrVII:287127-287682 3.4e-06 75_[+2]_5 chrXV:110852-111203 3.9e-06 30_[+2]_50 chrXVI:775646-776063 4.2e-06 6_[+2]_74 chrXVI:435672-436210 4.2e-06 47_[+2]_33 chrXIII:808099-808525 4.2e-06 29_[+2]_51 chrV:130972-131360 4.2e-06 11_[+2]_69 chrIII:168130-168552 4.2e-06 55_[+2]_25 chrII:350615-351050 4.2e-06 50_[-2]_30 chrXIII:747688-748140 4.5e-06 73_[+2]_7 chrXI:162433-162683 4.5e-06 24_[+2]_56 chrX:374196-374848 4.5e-06 79_[+2]_1 chrXII:426916-427442 6.5e-06 8_[-2]_72 chrX:355203-355736 6.5e-06 42_[-2]_38 chrX:204515-205050 6.5e-06 8_[-2]_72 chrVII:544410-544857 6.5e-06 39_[+2]_41 chrIX:336091-336672 6.5e-06 63_[+2]_17 chrIX:324195-324597 6.5e-06 2_[+2]_78 chrII:405673-406223 6.5e-06 67_[-2]_13 chrIV:1075291-1075754 1.9e-05 46_[+2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVGCYAH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCYYWWMCCACTRVGCYAH width=20 seqs=93 chrXV:274239-275099 ( 60) CGCCTTAACCACTCGGCCAC 1 chrIV:1150693-1151160 ( 40) CGCCTTAACCACTCGGCCAC 1 chrXIII:259026-259442 ( 30) CGCCTTAACCACTCGGCCAA 1 chrXII:167755-168241 ( 52) CGCCTTAACCACTCGGCCAA 1 chrVIII:132800-133327 ( 69) CGCCTTAACCACTCGGCCAA 1 chrXIII:320993-321435 ( 30) CGCGCTACCGACTACGCCAC 1 chrXII:656843-657199 ( 10) CGCGCTACCGACTACGCCAC 1 chrXI:219627-220113 ( 81) CGCGCTACCGACTACGCCAC 1 chrVIII:145779-146780 ( 60) CGCGCTACCGACTACGCCAC 1 chrV:288180-288781 ( 69) CGCCTTAACCACTCGGCCAT 1 chrIII:227758-228219 ( 10) CGCCTTAACCACTCGGCCAT 1 chrX:617684-618140 ( 63) GCCTTAAACCACTCGGCCAA 1 chrXVI:819343-819824 ( 2) GCCTTAACCAACTGGGCCAA 1 chrXIV:602060-602554 ( 61) GCCTTAACCAACTGGGCCAA 1 chrXII:1051969-1052225 ( 72) GCCTTAACCAACTGGGCCAA 1 chrV:443106-443336 ( 79) GCCTTAACCAACTGGGCCAA 1 chrIX:183291-183695 ( 45) GCCTTAACCAACTGGGCCAA 1 chrXI:84025-84410 ( 47) GCCTTAGACCACTCGGCCAA 1 chrX:424284-424729 ( 34) GCCTTAGACCACTCGGCCAA 1 chrXII:605160-605640 ( 57) AGCTCTAACCACTGAGCTAC 1 chrVII:115268-115711 ( 55) CGCTCTACCAACTGAGCTAA 1 chrXV:340147-340605 ( 20) CGCCGTGACCATTGGGCCAC 1 chrXI:490728-491213 ( 54) CGCCGTGACCATTGGGCCAC 1 chrXVI:581851-582327 ( 29) CGCGCTACCGATTGCGCCAA 1 chrXIII:480416-480872 ( 74) CGCGCTACCGATTGCGCCAA 1 chrVII:122038-122535 ( 39) CGCGCTACCGATTGCGCCAA 1 chrIX:299994-300511 ( 73) CGCGCTACCGATTGCGCCAA 1 chrIV:1351900-1353076 ( 75) CGCGCTACCGATTGCGCCAA 1 chrIV:1201522-1202003 ( 44) CGCGCTACCGATTGCGCCAA 1 chrIII:151125-151570 ( 34) CGCGCTACCGATTGCGCCAA 1 chrXV:353924-354312 ( 20) CGCCTTACCAACTTGGCCAT 1 chrXIV:374651-375089 ( 55) CGCTCTCCCAACTGAGCTAA 1 chrVIII:358286-358771 ( 66) CGCTCTCCCAACTGAGCTAA 1 chrVIII:237751-238091 ( 43) CGCTCTCCCAACTGAGCTAA 1 chrVII:440575-441008 ( 41) CGCTCTCCCAACTGAGCTAA 1 chrIV:1095164-1095657 ( 76) CGCTCTCCCAACTGAGCTAA 1 chrII:36249-36607 ( 26) CGCTCTCCCAACTGAGCTAA 1 chrXVI:810576-810868 ( 10) GCCTTAACCAACTTGGCCAT 1 chrXV:228097-228530 ( 74) GCCTTAACCAACTTGGCCAT 1 chrVII:730957-731388 ( 21) GCCTTAACCAACTTGGCCAT 1 chrIII:127533-127889 ( 61) GCCTTAACCAACTTGGCCAT 1 chrXVI:860116-860685 ( 35) GGATTTTACCACTAAACCAC 1 chrXVI:571997-572523 ( 65) GGATTTTACCACTAAACCAC 1 chrXV:282015-282361 ( 32) GGATTTTACCACTAAACCAC 1 chrX:396578-396946 ( 59) GGATTTTACCACTAAACCAC 1 chrVII:930877-931161 ( 29) GGATTTTACCACTAAACCAC 1 chrVII:845292-846087 ( 16) GGATTTTACCACTAAACCAC 1 chrXIV:442852-443243 ( 15) GCCTTAGACCGCTCGGCCAA 1 chrXIII:504655-505176 ( 36) GCCTTAGACCGCTCGGCCAA 1 chrXIII:372194-372764 ( 64) GCCATAACCGACTAGACCAC 1 chrXI:307944-308453 ( 44) GCCATAACCGACTAGACCAC 1 chrX:378123-378585 ( 62) GCCATAACCGACTAGACCAC 1 chrVII:823348-823722 ( 3) GCCATAACCGACTAGACCAC 1 chrVII:205308-205778 ( 34) GCCTTAGACCGCTCGGCCAA 1 chrV:438489-438953 ( 35) GCCATAACCGACTAGACCAC 1 chrXIII:572632-573252 ( 38) CGCTCTTCCTACTGAGCTAC 1 chrIV:1175582-1176094 ( 47) CGCTCTTCCTACTGAGCTAC 1 chrVII:700274-701158 ( 15) GCCTTAGACCACTCGGCCAG 1 chrXIII:195949-196301 ( 70) GAATCATACCACTAGACCAC 1 chrVIII:388690-389207 ( 72) GAATCATACCACTAGACCAC 1 chrI:138947-139346 ( 62) GAATCATACCACTAGACCAC 1 chrXVI:744093-744524 ( 32) ACGCTCTACCACTAAGCTAA 1 chrVIII:466902-467151 ( 20) ACGCTCTACCACTAAGCTAA 1 chrVII:1004031-1004406 ( 54) ACGCTCTACCACTAAGCTAA 1 chrVII:661524-661975 ( 56) ACGCTCTACCACTAAGCTAA 1 chrXVI:338736-339139 ( 7) GCGCGCTTCCACTGCGCCAC 1 chrX:517638-518092 ( 44) GCGCGCTTCCACTGCGCCAC 1 chrIII:149728-150131 ( 47) GCGCGCTTCCACTGCGCCAC 1 chrX:745098-745749 ( 73) CCCATATCCAACTCCACTAC 1 chrXIII:837719-838206 ( 22) CCTTAAACCAACTTGGCTAC 1 chrX:542765-543264 ( 55) CCTTAAACCAACTTGGCTAC 1 chrVI:167231-167645 ( 55) CCTTAAACCAACTTGGCTAC 1 chrIV:768336-768913 ( 28) ACCGTCAACAACTTCACCAA 1 chrVII:878592-879038 ( 25) AAGCTCTACCATTGAGCCAC 1 chrVII:287127-287682 ( 76) AAGCTCTACCATTGAGCCAC 1 chrXV:110852-111203 ( 31) GATGATAACCACTACACTAA 1 chrXVI:775646-776063 ( 7) CTGCGCTACCACTGCGCCAT 1 chrXVI:435672-436210 ( 48) CTGCGCTACCACTGCGCCAT 1 chrXIII:808099-808525 ( 30) AGTGATAACCACTACACTAT 1 chrV:130972-131360 ( 12) AGTGATAACCACTACACTAT 1 chrIII:168130-168552 ( 56) AGTGATAACCACTACACTAT 1 chrII:350615-351050 ( 51) AGTGATAACCACTACACTAT 1 chrXIII:747688-748140 ( 74) ACGCGTTGCCATTACGCCAC 1 chrXI:162433-162683 ( 25) ACGCGTTGCCATTACGCCAC 1 chrX:374196-374848 ( 80) ACGCGTTGCCATTACGCCAC 1 chrXII:426916-427442 ( 9) CATTCTGACCATTAAACTAT 1 chrX:355203-355736 ( 43) CATTCTGACCATTAAACTAT 1 chrX:204515-205050 ( 9) CATTCTGACCATTAAACTAT 1 chrVII:544410-544857 ( 40) CATTCTGACCATTAAACTAT 1 chrIX:336091-336672 ( 64) CATTCTGACCATTAAACTAT 1 chrIX:324195-324597 ( 3) CATTCTGACCATTAAACTAT 1 chrII:405673-406223 ( 68) CATTCTGACCATTAAACTAT 1 chrIV:1075291-1075754 ( 47) CGTGATAGCCGCTACACTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVGCYAH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 39690 bayes= 7.46486 E= 8.3e-173 -92 128 91 -1318 -113 99 121 -383 -166 158 -37 -83 -224 41 -1 66 -166 78 -86 60 -2 -59 -1318 90 70 -159 -27 -13 73 111 -218 -324 -1318 236 -1318 -1318 -37 155 -18 -383 165 -1318 -218 -1318 -1318 199 -1318 -44 -1318 -1318 -1318 171 42 -27 78 -166 3 58 103 -1318 3 -1318 182 -1318 -1318 236 -1318 -1318 -1318 178 -1318 13 171 -1318 -1318 -1318 26 103 -418 -44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVGCYAH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 93 E= 8.3e-173 0.161290 0.473118 0.365591 0.000000 0.139785 0.387097 0.451613 0.021505 0.096774 0.580645 0.150538 0.172043 0.064516 0.258065 0.193548 0.483871 0.096774 0.333333 0.107527 0.462366 0.301075 0.129032 0.000000 0.569892 0.494624 0.064516 0.161290 0.279570 0.505376 0.419355 0.043011 0.032258 0.000000 1.000000 0.000000 0.000000 0.236559 0.569892 0.172043 0.021505 0.956989 0.000000 0.043011 0.000000 0.000000 0.774194 0.000000 0.225806 0.000000 0.000000 0.000000 1.000000 0.408602 0.161290 0.333333 0.096774 0.311828 0.290323 0.397849 0.000000 0.311828 0.000000 0.688172 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.365591 0.397849 0.010753 0.225806 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVGCYAH MEME-2 regular expression -------------------------------------------------------------------------------- [CG][GC]C[TC][TC][TA][AT][AC]C[CA]A[CT]T[AG][GAC][GA]C[CT]A[CAT] -------------------------------------------------------------------------------- Time 435.68 secs. ******************************************************************************** ******************************************************************************** MOTIF WACAYCCRTACAYC MEME-3 width = 14 sites = 71 llr = 794 E-value = 1.8e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif WACAYCCRTACAYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3619:::5:6:9:1 pos.-specific C 21816aa:2:a166 probability G 1311:::513:::: matrix T 5:::4:::7:::42 bits 2.4 2.1 ** * 1.9 ** * 1.7 ** * Relative 1.4 * ** * Entropy 1.2 ***** *** (16.1 bits) 0.9 ****** **** 0.7 ************ 0.5 ************* 0.2 ************** 0.0 -------------- Multilevel TACACCCATACACC consensus AG T G G TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chrXV:639158-639466 - 55 1.68e-09 TGACTACTTT TACACCCGTACACC ACACATACAA chrX:690571-690938 + 10 1.27e-08 GGTCATCAA CACACCCGTACACC ACCATGTGCG chrVIII:125882-126328 + 46 3.75e-08 AAGACGTTAA TGCATCCGTACACC TACATCTTTA chrXIII:145886-146274 + 53 5.76e-08 AGCATTTTTG TACATCCATACACC ATACACCATA chrII:89634-90059 - 5 5.76e-08 TTTGTGACTT TACATCCATACACC CTCT chrI:81841-82347 - 66 5.76e-08 AAACTGTTGG TACATCCGTGCACC TCCGCTAGAT chrXI:614158-614411 + 68 1.01e-07 TAATGACTGC AACACCCGCACACC ACAAGGTGAA chrXII:932055-932545 - 9 1.36e-07 CGTACATCCG TACATCCGTACATC TGAACACA chrXI:431372-431651 + 32 1.62e-07 ACAGCGCAAA TACACCCATACACT ATTTTTACAT chrXVI:279969-280209 + 74 1.73e-07 AGGAGAAGTC CGCATCCGTGCACC TCACAATTCC chrXIV:783739-784322 - 80 2.10e-07 ACACACC CACACCCACACACC CACACACACC chrXI:666491-666801 - 16 2.10e-07 ACACCCACAC CACACCCACACACC CACAACCCTA chrX:703246-703643 - 57 2.10e-07 GACGCGTGGA AGCACCCATGCATC CACTATTTAT chrII:592889-593276 - 53 2.59e-07 CCTCTTTTCT TGCATCCATACATC TTTGAACTCC chrV:396190-396578 + 44 3.16e-07 CCCTGTTGTA TACATCCGTACACT TTTGTGAACC chrVII:371224-371511 + 37 3.52e-07 AAAAAATACC GGCACCCATGCACC TCACACCGCC chrIII:163472-163883 - 20 3.91e-07 GTTAAATTAC CGCACCCACGCACC CAACCGCGGC chrVII:555144-555850 + 62 4.78e-07 ACATCCCTTT TACACCCGTGCATT AAAAGTGTTT chrV:85119-85505 + 37 5.21e-07 AGTGATATCA TCCACCCATACCCC TCGATGTATT chrVII:277011-277404 + 69 7.01e-07 GTATTTTAGC TAGACCCATACACC CGCTCTATGG chrIV:1300873-1301361 + 41 7.01e-07 TTTTCCTTCA AACATCCGTGCACT GTGGATGTTT chrX:545408-545770 - 18 8.62e-07 CGAAAAGACA GCCACCCATGCACC GCACTCGCAC chrVIII:148985-149245 - 17 8.62e-07 CCCATACATT TTCACCCATGCACC ATTGAATTAT chrV:423080-423503 + 30 8.62e-07 GCTGCATATT TACCTCCGTACACC TTCTACACCC chrIV:321623-321977 + 48 8.62e-07 TTCATACCTT TACCTCCGTACACC AATCTTTATT chrII:181298-181712 + 39 8.62e-07 CCCTTTACAA AGCACCCATACATT ACATTGAATA chrXV:79722-80151 - 62 9.83e-07 ACTCCATGTA AACACCCGTACATA TTAAATAAGT chrVII:726374-726771 + 81 9.83e-07 ATACCCTATA TACACCCATACCCT ATTTTT chrII:44952-45390 + 48 1.06e-06 GAGACAATCA TGCATCCGTACATT CTATGTATGT chrXVI:378660-378998 - 61 1.22e-06 ATTCAGAGAA AACATCCGTACATT CGAGTTCTCA chrXII:1028179-1028583 + 66 1.22e-06 AAGACAAAAT ATCACCCATGCACC AAAATGTATG chrXII:903324-903649 + 85 1.22e-06 ATAGAAGCAT TGGACCCATGCACC AC chrXVI:794486-794818 + 52 1.36e-06 AACATCTCCA AACACCCATACATA TTTATATTAT chrVII:1000364-1000596 + 27 1.49e-06 CCACTAGGAT AGCACCCAAACACC TGCATATTTG chrXII:241622-242021 + 35 1.70e-06 TTTCCCTTTT TACATCCGTACATA TAAAATGTAA chrIV:1355719-1355995 - 56 1.70e-06 AGCTCCCTGT AACATCCATACATT CGGTTAAAAT chrIV:358066-358500 - 16 1.87e-06 TGGTGTACAC ACCACCCATACATT ATCTGACAAG chrXI:382188-382455 + 33 2.07e-06 TTGCTGCTGT TGCATCCGGACATC ACACCCAACA chrV:53496-53970 - 52 2.07e-06 TACCCTGTTT AACATCCGAACACC AAATATGTGT chrXV:1025692-1026068 + 45 2.55e-06 ACATATGCTG AACACCCATTCATC ACGTGTAATT chrXII:713139-713634 - 36 2.80e-06 TGCAGACTAT CACATCCGTACATA TGTATAAAAA chrV:140453-140912 - 80 2.80e-06 TCGATGA TGCCCCCATACCCC ATACCCCATG chrXI:618745-619316 - 31 3.13e-06 AAATACTATT TCCATCCGTGCCTC TAATAGATTT chrVII:788322-788750 - 43 3.13e-06 TATTCCTTAC AACATCCGTGCATA CTCTAAACCC chrIX:254196-254564 - 28 3.38e-06 GGCGAGCTTC CGCACCCACACATT CTAATTGCCG chrXV:968105-968471 - 31 3.71e-06 TCGAGCAGCG CACGCCCACGCACC CCACGCTTTT chrXV:167972-168474 - 15 5.38e-06 GGCGGCTTTA AACACCCGTGCCTA TATTTAAGTT chrXIII:298551-298902 + 41 5.38e-06 CGATTAAAGC AACACCCAGACATT ACATGGCCCA chrX:391803-392129 + 77 6.46e-06 GCACACGCCC CACACCCAGACCTC CCTGCGAGCG chrVI:4530-4770 + 81 6.46e-06 GTGACATATA TATACCCACACACC CACACA chrX:651248-651604 + 44 7.05e-06 TTTATACAAC AACACCCATATACC CATAATTATT chrIV:1400891-1401960 + 57 7.05e-06 CCAATCATTT TCCACCCACACATA TATTACCCTT chrXI:67795-68046 + 42 7.66e-06 AACCCGTGCT GAAATCCGTGCACC GCATCAAATT chrIX:99617-100029 - 55 8.41e-06 GTGCAATTAA AGCATCGGTACACC ATGTAACACC chrXIV:330682-331260 + 28 9.11e-06 TCAGAGATCT TACATCCTTACATC TAAAGTAAAA chrXV:216283-216703 + 15 9.86e-06 GGAACATCCG AGCACCCGCGCCTT CCTCAACCCA chrXII:424178-424499 + 19 1.08e-05 CGTAAGTCGC TACACACGTACATT GCTGTGGTGC chrIII:178257-178767 + 27 1.08e-05 AGATGTTTAT TAAGTCCGTACACC GCACGTAAGT chrXV:253812-254095 - 75 1.26e-05 CAAAACTTTT TTAATCCGTACACC GCGCGTATAA chrXI:158200-158641 + 29 1.26e-05 TTCATTTATT TCAACCCGTGCACA CTGGAAATAA chrV:141079-141247 - 25 1.38e-05 AAACTACGCC TCCACCCACACCTT CCGAATAAAT chrV:6191-6382 + 68 1.38e-05 AATAAGAAAA CAGACCCATTCACC AACGACGTAT chrIX:257355-257759 + 25 1.61e-05 GGTATGTGAC GACATCTGTACACC GCAAAGTTGT chrXII:370594-370938 - 70 2.20e-05 GCGCACTTCG CCCACCCATGAACC ACACGGTTAG chrXI:99751-99953 + 39 2.36e-05 ATCAGCCTTC CATGCCCGTGCACC CACGGCTCCT chrXV:978815-979159 - 1 2.73e-05 GCGGTGTCGT AGAACCCATTCATC chrX:414785-416383 + 13 2.92e-05 TCAGCGCCAA AGGATCCACGCACT AGCAAAATAA chrXIV:241389-241815 + 10 3.89e-05 CCAACATCC AGCACCTAAACACC ATCAATACAC chrXVI:627257-627933 + 46 5.80e-05 GGGATACCGC TCCCCACGTACCCC ACGACCAGCC chrII:167908-168206 + 27 6.18e-05 ACAGTGTTTT AAAACCCAGACATA TTTTTCACCA chrXIV:569500-570056 + 48 7.47e-05 TCCTAATGAC TGCGTACGTGCACT GTAGTCCCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639158-639466 1.7e-09 54_[-3]_32 chrX:690571-690938 1.3e-08 9_[+3]_77 chrVIII:125882-126328 3.7e-08 45_[+3]_41 chrXIII:145886-146274 5.8e-08 52_[+3]_34 chrII:89634-90059 5.8e-08 4_[-3]_82 chrI:81841-82347 5.8e-08 65_[-3]_21 chrXI:614158-614411 1e-07 67_[+3]_19 chrXII:932055-932545 1.4e-07 8_[-3]_78 chrXI:431372-431651 1.6e-07 31_[+3]_55 chrXVI:279969-280209 1.7e-07 73_[+3]_13 chrXIV:783739-784322 2.1e-07 79_[-3]_7 chrXI:666491-666801 2.1e-07 15_[-3]_71 chrX:703246-703643 2.1e-07 56_[-3]_30 chrII:592889-593276 2.6e-07 52_[-3]_34 chrV:396190-396578 3.2e-07 43_[+3]_43 chrVII:371224-371511 3.5e-07 36_[+3]_50 chrIII:163472-163883 3.9e-07 19_[-3]_67 chrVII:555144-555850 4.8e-07 61_[+3]_25 chrV:85119-85505 5.2e-07 36_[+3]_50 chrVII:277011-277404 7e-07 68_[+3]_18 chrIV:1300873-1301361 7e-07 40_[+3]_46 chrX:545408-545770 8.6e-07 17_[-3]_69 chrVIII:148985-149245 8.6e-07 16_[-3]_70 chrV:423080-423503 8.6e-07 29_[+3]_57 chrIV:321623-321977 8.6e-07 47_[+3]_39 chrII:181298-181712 8.6e-07 38_[+3]_48 chrXV:79722-80151 9.8e-07 61_[-3]_25 chrVII:726374-726771 9.8e-07 80_[+3]_6 chrII:44952-45390 1.1e-06 47_[+3]_39 chrXVI:378660-378998 1.2e-06 60_[-3]_26 chrXII:1028179-1028583 1.2e-06 65_[+3]_21 chrXII:903324-903649 1.2e-06 84_[+3]_2 chrXVI:794486-794818 1.4e-06 51_[+3]_35 chrVII:1000364-1000596 1.5e-06 26_[+3]_60 chrXII:241622-242021 1.7e-06 34_[+3]_52 chrIV:1355719-1355995 1.7e-06 55_[-3]_31 chrIV:358066-358500 1.9e-06 15_[-3]_71 chrXI:382188-382455 2.1e-06 32_[+3]_54 chrV:53496-53970 2.1e-06 51_[-3]_35 chrXV:1025692-1026068 2.5e-06 44_[+3]_42 chrXII:713139-713634 2.8e-06 35_[-3]_51 chrV:140453-140912 2.8e-06 79_[-3]_7 chrXI:618745-619316 3.1e-06 30_[-3]_56 chrVII:788322-788750 3.1e-06 42_[-3]_44 chrIX:254196-254564 3.4e-06 27_[-3]_59 chrXV:968105-968471 3.7e-06 30_[-3]_56 chrXV:167972-168474 5.4e-06 14_[-3]_72 chrXIII:298551-298902 5.4e-06 40_[+3]_46 chrX:391803-392129 6.5e-06 76_[+3]_10 chrVI:4530-4770 6.5e-06 80_[+3]_6 chrX:651248-651604 7e-06 43_[+3]_43 chrIV:1400891-1401960 7e-06 56_[+3]_30 chrXI:67795-68046 7.7e-06 41_[+3]_45 chrIX:99617-100029 8.4e-06 54_[-3]_32 chrXIV:330682-331260 9.1e-06 27_[+3]_59 chrXV:216283-216703 9.9e-06 14_[+3]_72 chrXII:424178-424499 1.1e-05 18_[+3]_68 chrIII:178257-178767 1.1e-05 26_[+3]_60 chrXV:253812-254095 1.3e-05 74_[-3]_12 chrXI:158200-158641 1.3e-05 28_[+3]_58 chrV:141079-141247 1.4e-05 24_[-3]_62 chrV:6191-6382 1.4e-05 67_[+3]_19 chrIX:257355-257759 1.6e-05 24_[+3]_62 chrXII:370594-370938 2.2e-05 69_[-3]_17 chrXI:99751-99953 2.4e-05 38_[+3]_48 chrXV:978815-979159 2.7e-05 [-3]_86 chrX:414785-416383 2.9e-05 12_[+3]_74 chrXIV:241389-241815 3.9e-05 9_[+3]_77 chrXVI:627257-627933 5.8e-05 45_[+3]_41 chrII:167908-168206 6.2e-05 26_[+3]_60 chrXIV:569500-570056 7.5e-05 47_[+3]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WACAYCCRTACAYC width=14 seqs=71 chrXV:639158-639466 ( 55) TACACCCGTACACC 1 chrX:690571-690938 ( 10) CACACCCGTACACC 1 chrVIII:125882-126328 ( 46) TGCATCCGTACACC 1 chrXIII:145886-146274 ( 53) TACATCCATACACC 1 chrII:89634-90059 ( 5) TACATCCATACACC 1 chrI:81841-82347 ( 66) TACATCCGTGCACC 1 chrXI:614158-614411 ( 68) AACACCCGCACACC 1 chrXII:932055-932545 ( 9) TACATCCGTACATC 1 chrXI:431372-431651 ( 32) TACACCCATACACT 1 chrXVI:279969-280209 ( 74) CGCATCCGTGCACC 1 chrXIV:783739-784322 ( 80) CACACCCACACACC 1 chrXI:666491-666801 ( 16) CACACCCACACACC 1 chrX:703246-703643 ( 57) AGCACCCATGCATC 1 chrII:592889-593276 ( 53) TGCATCCATACATC 1 chrV:396190-396578 ( 44) TACATCCGTACACT 1 chrVII:371224-371511 ( 37) GGCACCCATGCACC 1 chrIII:163472-163883 ( 20) CGCACCCACGCACC 1 chrVII:555144-555850 ( 62) TACACCCGTGCATT 1 chrV:85119-85505 ( 37) TCCACCCATACCCC 1 chrVII:277011-277404 ( 69) TAGACCCATACACC 1 chrIV:1300873-1301361 ( 41) AACATCCGTGCACT 1 chrX:545408-545770 ( 18) GCCACCCATGCACC 1 chrVIII:148985-149245 ( 17) TTCACCCATGCACC 1 chrV:423080-423503 ( 30) TACCTCCGTACACC 1 chrIV:321623-321977 ( 48) TACCTCCGTACACC 1 chrII:181298-181712 ( 39) AGCACCCATACATT 1 chrXV:79722-80151 ( 62) AACACCCGTACATA 1 chrVII:726374-726771 ( 81) TACACCCATACCCT 1 chrII:44952-45390 ( 48) TGCATCCGTACATT 1 chrXVI:378660-378998 ( 61) AACATCCGTACATT 1 chrXII:1028179-1028583 ( 66) ATCACCCATGCACC 1 chrXII:903324-903649 ( 85) TGGACCCATGCACC 1 chrXVI:794486-794818 ( 52) AACACCCATACATA 1 chrVII:1000364-1000596 ( 27) AGCACCCAAACACC 1 chrXII:241622-242021 ( 35) TACATCCGTACATA 1 chrIV:1355719-1355995 ( 56) AACATCCATACATT 1 chrIV:358066-358500 ( 16) ACCACCCATACATT 1 chrXI:382188-382455 ( 33) TGCATCCGGACATC 1 chrV:53496-53970 ( 52) AACATCCGAACACC 1 chrXV:1025692-1026068 ( 45) AACACCCATTCATC 1 chrXII:713139-713634 ( 36) CACATCCGTACATA 1 chrV:140453-140912 ( 80) TGCCCCCATACCCC 1 chrXI:618745-619316 ( 31) TCCATCCGTGCCTC 1 chrVII:788322-788750 ( 43) AACATCCGTGCATA 1 chrIX:254196-254564 ( 28) CGCACCCACACATT 1 chrXV:968105-968471 ( 31) CACGCCCACGCACC 1 chrXV:167972-168474 ( 15) AACACCCGTGCCTA 1 chrXIII:298551-298902 ( 41) AACACCCAGACATT 1 chrX:391803-392129 ( 77) CACACCCAGACCTC 1 chrVI:4530-4770 ( 81) TATACCCACACACC 1 chrX:651248-651604 ( 44) AACACCCATATACC 1 chrIV:1400891-1401960 ( 57) TCCACCCACACATA 1 chrXI:67795-68046 ( 42) GAAATCCGTGCACC 1 chrIX:99617-100029 ( 55) AGCATCGGTACACC 1 chrXIV:330682-331260 ( 28) TACATCCTTACATC 1 chrXV:216283-216703 ( 15) AGCACCCGCGCCTT 1 chrXII:424178-424499 ( 19) TACACACGTACATT 1 chrIII:178257-178767 ( 27) TAAGTCCGTACACC 1 chrXV:253812-254095 ( 75) TTAATCCGTACACC 1 chrXI:158200-158641 ( 29) TCAACCCGTGCACA 1 chrV:141079-141247 ( 25) TCCACCCACACCTT 1 chrV:6191-6382 ( 68) CAGACCCATTCACC 1 chrIX:257355-257759 ( 25) GACATCTGTACACC 1 chrXII:370594-370938 ( 70) CCCACCCATGAACC 1 chrXI:99751-99953 ( 39) CATGCCCGTGCACC 1 chrXV:978815-979159 ( 1) AGAACCCATTCATC 1 chrX:414785-416383 ( 13) AGGATCCACGCACT 1 chrXIV:241389-241815 ( 10) AGCACCTAAACACC 1 chrXVI:627257-627933 ( 46) TCCCCACGTACCCC 1 chrII:167908-168206 ( 27) AAAACCCAGACATA 1 chrXIV:569500-570056 ( 48) TGCGTACGTGCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 42630 bayes= 10.0635 E= 1.8e-062 9 -20 -179 56 88 -62 46 -285 -185 209 -179 -344 154 -179 -179 -1279 -1279 164 -1279 37 -285 230 -1279 -1279 -1279 230 -379 -344 77 -1279 126 -443 -285 -33 -179 129 109 -1279 67 -285 -443 232 -1279 -443 152 -62 -1279 -1279 -1279 164 -1279 37 -127 170 -1279 -35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 71 E= 1.8e-062 0.323944 0.169014 0.056338 0.450704 0.563380 0.126761 0.267606 0.042254 0.084507 0.830986 0.056338 0.028169 0.887324 0.056338 0.056338 0.000000 0.000000 0.605634 0.000000 0.394366 0.042254 0.957746 0.000000 0.000000 0.000000 0.957746 0.014085 0.028169 0.521127 0.000000 0.464789 0.014085 0.042254 0.154930 0.056338 0.746479 0.647887 0.000000 0.309859 0.042254 0.014085 0.971831 0.000000 0.014085 0.873239 0.126761 0.000000 0.000000 0.000000 0.605634 0.000000 0.394366 0.126761 0.633803 0.000000 0.239437 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACAYC MEME-3 regular expression -------------------------------------------------------------------------------- [TA][AG]CA[CT]CC[AG]T[AG]CA[CT][CT] -------------------------------------------------------------------------------- Time 630.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71849-73258 5.20e-01 100 chrI:81841-82347 7.10e-05 65_[-3(5.76e-08)]_21 chrI:138947-139346 5.38e-04 61_[-2(7.10e-07)]_19 chrI:166172-166596 8.40e-01 100 chrII:9443-9884 3.06e-03 29_[-1(9.98e-07)]_50 chrII:36249-36607 1.13e-09 25_[-2(1.05e-07)]_34_[+1(6.46e-09)] chrII:44952-45390 3.71e-03 47_[+3(1.06e-06)]_5_[-3(1.26e-05)]_\ 20 chrII:60670-62000 9.72e-01 100 chrII:88943-89469 9.93e-01 100 chrII:89634-90059 6.26e-04 4_[-3(5.76e-08)]_82 chrII:144064-145393 5.98e-01 100 chrII:165104-165397 7.13e-02 55_[+3(6.18e-05)]_31 chrII:167908-168206 5.88e-02 26_[+3(6.18e-05)]_60 chrII:181298-181712 6.14e-03 38_[+3(8.62e-07)]_48 chrII:197308-197850 3.57e-06 7_[+1(1.92e-10)]_72 chrII:226973-227334 8.97e-03 22_[+1(2.48e-06)]_57 chrII:266209-266658 3.70e-09 [-2(4.01e-08)]_16_[+1(1.16e-08)]_43 chrII:326345-327151 7.44e-01 100 chrII:331873-332038 6.60e-01 100 chrII:332245-333059 6.19e-01 100 chrII:347399-347983 5.44e-03 21_[-1(9.98e-07)]_58 chrII:350615-351050 2.54e-04 50_[-2(4.20e-06)]_2_[-1(6.77e-05)]_\ 7 chrII:405673-406223 8.06e-08 20_[+1(2.70e-09)]_26_[-2(6.52e-06)]_\ 13 chrII:415492-416266 7.48e-01 100 chrII:477031-477762 9.11e-02 58_[+1(6.54e-05)]_21 chrII:592889-593276 4.43e-04 35_[-3(7.02e-05)]_3_[-3(2.59e-07)]_\ 34 chrII:604074-607116 5.70e-01 100 chrII:644897-645418 2.43e-01 100 chrIII:65-1729 3.30e-01 100 chrIII:57394-59095 9.03e-01 100 chrIII:90782-91101 3.48e-02 50_[+1(1.84e-05)]_29 chrIII:123386-123811 7.58e-11 38_[-1(6.80e-13)]_15_[+2(7.19e-05)]_\ 6 chrIII:127533-127889 9.07e-04 60_[-2(1.20e-07)]_20 chrIII:142618-143004 9.63e-01 100 chrIII:149728-150131 4.38e-03 46_[-2(1.73e-06)]_34 chrIII:151125-151570 1.56e-04 33_[+2(2.54e-08)]_47 chrIII:163472-163883 1.92e-03 19_[-3(3.91e-07)]_24_[-3(9.00e-05)]_\ 29 chrIII:168130-168552 1.10e-07 19_[-1(8.18e-09)]_15_[+2(4.20e-06)]_\ 25 chrIII:177508-177900 6.02e-01 100 chrIII:178257-178767 2.70e-02 9_[-3(3.37e-05)]_3_[+3(1.08e-05)]_\ 60 chrIII:227758-228219 6.20e-08 9_[-2(1.05e-09)]_44_[+1(9.67e-06)]_\ 6 chrIII:295333-295893 4.69e-01 100 chrIII:308621-308968 4.55e-02 100 chrIII:316225-316598 1.09e-01 58_[-2(6.80e-05)]_22 chrIV:83312-84123 8.50e-01 100 chrIV:117154-118026 8.48e-01 100 chrIV:130265-131128 6.36e-01 100 chrIV:216646-217554 6.07e-01 100 chrIV:221665-222398 2.69e-01 100 chrIV:229469-230464 8.45e-01 100 chrIV:307981-309303 5.71e-01 100 chrIV:321623-321977 6.03e-03 47_[+3(8.62e-07)]_12_[+3(1.61e-05)]_\ 13 chrIV:340974-341797 3.81e-01 100 chrIV:358066-358500 1.01e-02 15_[-3(1.87e-06)]_71 chrIV:359205-359763 6.78e-02 100 chrIV:410214-410457 7.26e-01 100 chrIV:411064-411676 8.25e-01 100 chrIV:433960-435058 7.78e-01 100 chrIV:437546-438175 8.64e-03 12_[+1(2.48e-06)]_67 chrIV:488432-488992 3.60e-01 100 chrIV:489742-491280 7.72e-01 100 chrIV:519657-519964 5.44e-03 42_[-1(9.98e-07)]_37 chrIV:520689-521449 9.58e-02 100 chrIV:538856-539501 9.09e-01 100 chrIV:568720-569659 2.68e-01 100 chrIV:579023-580437 8.27e-02 37_[-2(8.59e-05)]_43 chrIV:619739-620412 9.26e-01 100 chrIV:667705-668569 9.20e-01 100 chrIV:721083-721493 2.21e-01 100 chrIV:757493-758405 2.95e-01 100 chrIV:768336-768913 5.75e-03 27_[+2(2.75e-06)]_53 chrIV:802563-802841 7.45e-01 100 chrIV:835836-836271 7.52e-01 100 chrIV:884291-884572 9.35e-01 100 chrIV:945790-946759 8.22e-01 100 chrIV:992677-993216 7.63e-01 100 chrIV:1013444-1013987 1.00e+00 100 chrIV:1016952-1017515 2.80e-07 33_[-1(2.28e-10)]_46 chrIV:1075291-1075754 2.67e-08 9_[-1(4.30e-10)]_16_[+2(1.92e-05)]_\ 34 chrIV:1095164-1095657 6.53e-10 19_[-1(6.46e-09)]_35_[+2(1.05e-07)]_\ 5 chrIV:1150693-1151160 9.44e-07 39_[+2(1.01e-10)]_41 chrIV:1175582-1176094 8.55e-04 46_[-2(2.77e-07)]_34 chrIV:1201522-1202003 4.02e-11 43_[-2(2.54e-08)]_16_[+1(3.16e-10)] chrIV:1236506-1237983 6.31e-01 100 chrIV:1300873-1301361 2.76e-03 40_[+3(7.01e-07)]_3_[-3(4.78e-05)]_\ 29 chrIV:1305395-1305810 3.71e-01 100 chrIV:1351900-1353076 4.02e-11 37_[-1(3.16e-10)]_16_[+2(2.54e-08)]_\ 6 chrIV:1355719-1355995 2.55e-03 31_[-3(4.78e-07)]_10_[-3(1.70e-06)]_\ 31 chrIV:1359423-1359971 7.59e-01 100 chrIV:1400891-1401960 2.15e-02 41_[+3(6.59e-05)]_1_[+3(7.05e-06)]_\ 30 chrIV:1450259-1450589 7.80e-01 100 chrIV:1450748-1451213 1.08e-01 81_[-3(6.18e-05)]_5 chrIV:1461498-1461848 3.04e-01 100 chrIX:68190-68769 2.02e-01 100 chrIX:99617-100029 2.83e-02 54_[-3(8.41e-06)]_32 chrIX:174883-175527 9.96e-01 100 chrIX:183291-183695 1.27e-11 6_[-1(1.92e-10)]_17_[+2(5.47e-09)]_\ 36 chrIX:197337-197911 2.80e-07 58_[+1(2.28e-10)]_21 chrIX:210656-210891 6.57e-01 100 chrIX:248542-249001 8.93e-02 56_[-3(9.00e-05)]_30 chrIX:254196-254564 6.39e-03 27_[-3(3.38e-06)]_59 chrIX:257355-257759 5.66e-02 24_[+3(1.61e-05)]_62 chrIX:299994-300511 4.02e-11 35_[-1(3.16e-10)]_16_[+2(2.54e-08)]_\ 8 chrIX:315564-316598 3.52e-01 100 chrIX:316784-317910 3.89e-01 100 chrIX:324195-324597 2.72e-02 2_[+2(6.52e-06)]_78 chrIX:325554-326071 1.44e-04 27_[+1(1.16e-08)]_52 chrIX:336091-336672 3.38e-06 27_[-1(1.18e-07)]_15_[+2(6.52e-06)]_\ 17 chrIX:370257-370580 3.44e-01 100 chrV:6191-6382 1.52e-02 67_[+3(1.38e-05)]_19 chrV:53496-53970 4.30e-03 34_[+3(1.16e-05)]_3_[-3(2.07e-06)]_\ 35 chrV:61187-62126 3.60e-01 100 chrV:67628-68801 2.82e-01 100 chrV:85119-85505 9.94e-04 7_[+3(1.75e-05)]_15_[+3(5.21e-07)]_\ 50 chrV:86425-87479 3.85e-01 100 chrV:99761-100281 9.20e-01 100 chrV:117216-118302 1.09e-01 100 chrV:130972-131360 2.09e-02 11_[+2(4.20e-06)]_69 chrV:134010-136083 7.38e-01 100 chrV:138471-139971 5.44e-01 100 chrV:140453-140912 7.80e-03 42_[-3(3.71e-06)]_23_[-3(2.80e-06)]_\ 7 chrV:141079-141247 2.82e-02 24_[-3(1.38e-05)]_62 chrV:176899-177401 3.50e-07 39_[+1(2.28e-10)]_40 chrV:207357-207529 1.31e-02 4_[+1(3.75e-06)]_75 chrV:249768-250534 3.50e-02 100 chrV:270046-270657 3.48e-02 70_[-2(3.55e-05)]_10 chrV:288180-288781 6.94e-08 22_[-1(9.67e-06)]_25_[+2(1.05e-09)]_\ 12 chrV:305811-307198 2.23e-01 100 chrV:311706-312271 7.58e-01 100 chrV:322011-322790 9.21e-01 100 chrV:354793-355368 2.90e-01 100 chrV:362123-362495 4.62e-01 100 chrV:396190-396578 9.86e-04 43_[+3(3.16e-07)]_4_[+3(6.18e-05)]_\ 25 chrV:423080-423503 2.91e-03 29_[+3(8.62e-07)]_57 chrV:431037-432071 8.83e-01 100 chrV:434409-435131 1.90e-01 100 chrV:435577-435934 1.56e-06 56_[-1(3.16e-10)]_23 chrV:438489-438953 1.62e-08 34_[-2(2.47e-07)]_17_[+1(1.30e-08)]_\ 8 chrV:441787-442686 2.83e-01 100 chrV:443106-443336 1.31e-11 40_[-1(1.92e-10)]_17_[+2(5.47e-09)]_\ 2 chrV:469191-470502 9.33e-01 100 chrV:487101-487639 3.50e-07 20_[-1(2.28e-10)]_59 chrV:492240-492431 1.60e-03 76_[-1(1.99e-07)]_3 chrV:551012-551589 2.43e-06 44_[-1(1.92e-10)]_35 chrVI:4530-4770 1.19e-02 80_[+3(6.46e-06)]_6 chrVI:53256-54332 3.49e-01 100 chrVI:64174-65541 8.93e-01 100 chrVI:75222-75876 3.76e-02 100 chrVI:95474-95915 2.00e-01 100 chrVI:101364-102051 6.70e-01 100 chrVI:137238-137769 6.08e-08 42_[-1(7.46e-08)]_17_[+2(1.20e-07)] chrVI:157897-158235 9.83e-01 100 chrVI:161999-162388 8.97e-01 100 chrVI:167231-167645 9.76e-03 54_[-2(2.37e-06)]_26 chrVI:180661-181271 1.02e-05 67_[-1(1.38e-09)]_12 chrVI:181431-181593 2.24e-01 100 chrVI:191188-191758 2.44e-01 100 chrVI:210425-211101 8.92e-01 100 chrVI:221369-222249 3.95e-01 100 chrVI:223268-224147 1.88e-01 100 chrVI:226353-226979 2.84e-01 100 chrVII:110126-110787 3.63e-01 100 chrVII:115268-115711 1.43e-04 54_[-2(1.33e-08)]_26 chrVII:122038-122535 4.02e-11 38_[-2(2.54e-08)]_16_[+1(3.16e-10)]_\ 5 chrVII:148205-149508 8.67e-01 100 chrVII:184902-185900 1.89e-01 34_[+2(9.75e-05)]_46 chrVII:205308-205778 3.16e-04 33_[-2(2.47e-07)]_47 chrVII:254143-254688 9.44e-01 100 chrVII:277011-277404 1.24e-03 68_[+3(7.01e-07)]_18 chrVII:287127-287682 4.30e-07 5_[-1(1.29e-07)]_49_[+2(3.42e-06)]_\ 5 chrVII:310459-312851 9.84e-01 100 chrVII:319216-320130 1.07e-01 100 chrVII:328412-329278 9.45e-01 100 chrVII:364897-366622 8.85e-01 100 chrVII:371224-371511 1.34e-04 36_[+3(3.52e-07)]_50 chrVII:401442-401618 2.56e-06 56_[-1(2.28e-10)]_23 chrVII:405461-406017 6.16e-01 100 chrVII:411639-412586 4.05e-01 100 chrVII:422734-423336 5.89e-01 100 chrVII:438291-438893 3.41e-01 100 chrVII:440575-441008 1.27e-04 40_[+2(1.05e-07)]_40 chrVII:479529-482665 5.43e-01 100 chrVII:531387-531781 8.30e-02 52_[-1(2.78e-05)]_27 chrVII:534145-535203 3.18e-01 100 chrVII:541712-542162 2.64e-06 3_[+1(2.28e-10)]_76 chrVII:544410-544857 3.38e-06 3_[-1(1.18e-07)]_15_[+2(6.52e-06)]_\ 41 chrVII:555144-555850 6.23e-04 61_[+3(4.78e-07)]_3_[-3(3.15e-05)]_\ 8 chrVII:561485-561715 9.86e-01 100 chrVII:648773-649344 4.02e-01 100 chrVII:661524-661975 1.13e-03 55_[-2(1.34e-06)]_25 chrVII:700274-701158 2.71e-10 14_[-2(3.85e-07)]_25_[+1(1.81e-08)]_\ 20 chrVII:706929-707268 3.81e-03 69_[-1(1.14e-06)]_10 chrVII:726374-726771 5.09e-03 63_[+3(9.83e-07)]_3_[+3(9.83e-07)]_\ 6 chrVII:730957-731388 4.97e-08 20_[-2(1.20e-07)]_17_[+1(7.46e-08)]_\ 22 chrVII:736188-737086 8.95e-01 100 chrVII:738901-739604 4.26e-01 100 chrVII:774158-774714 7.02e-06 4_[+1(7.82e-10)]_75 chrVII:779401-779752 8.71e-01 100 chrVII:788322-788750 1.31e-02 42_[-3(3.13e-06)]_44 chrVII:794262-794514 2.90e-01 100 chrVII:806585-807614 5.89e-02 29_[+1(7.01e-05)]_50 chrVII:823348-823722 2.39e-08 2_[-2(2.47e-07)]_17_[+1(1.30e-08)]_\ 40 chrVII:828432-828987 3.22e-05 73_[-1(2.70e-09)]_6 chrVII:845292-846087 1.72e-09 15_[-2(1.54e-07)]_14_[+1(1.38e-09)]_\ 30 chrVII:856732-857658 4.23e-01 100 chrVII:876193-876541 1.23e-01 100 chrVII:878592-879038 7.70e-03 24_[+2(3.42e-06)]_56 chrVII:882786-883852 4.63e-01 100 chrVII:930877-931161 1.35e-03 28_[+2(1.54e-07)]_52 chrVII:1000364-1000596 1.36e-03 26_[+3(1.49e-06)]_60 chrVII:1004031-1004406 1.03e-03 53_[-2(1.34e-06)]_27 chrVIII:35302-36069 5.06e-01 100 chrVIII:62438-63151 3.91e-03 51_[+1(3.75e-06)]_28 chrVIII:74901-75892 7.86e-01 100 chrVIII:103590-104510 1.95e-01 100 chrVIII:115939-116301 1.44e-04 46_[-1(1.16e-08)]_33 chrVIII:125882-126328 1.46e-04 45_[+3(3.75e-08)]_41 chrVIII:132800-133327 8.28e-09 22_[-1(2.48e-06)]_25_[+2(4.01e-10)]_\ 12 chrVIII:134072-134740 9.05e-05 5_[+1(8.18e-09)]_74 chrVIII:145779-146780 1.45e-12 22_[-1(7.82e-10)]_16_[+2(6.55e-10)]_\ 21 chrVIII:148985-149245 1.98e-03 16_[-3(8.62e-07)]_70 chrVIII:173571-176047 6.27e-01 100 chrVIII:237751-238091 1.63e-04 42_[+2(1.05e-07)]_38 chrVIII:296665-297232 4.92e-01 100 chrVIII:358286-358771 9.18e-10 9_[-1(6.46e-09)]_35_[+2(1.05e-07)]_\ 15 chrVIII:382653-383354 2.87e-01 100 chrVIII:388690-389207 3.19e-10 4_[-1(2.28e-10)]_46_[+2(7.10e-07)]_\ 9 chrVIII:451354-453112 5.28e-01 100 chrVIII:466902-467151 4.18e-07 19_[-2(1.34e-06)]_15_[+1(1.99e-07)]_\ 25 chrVIII:475478-475910 3.58e-06 71_[-1(4.30e-10)]_8 chrVIII:505812-506360 1.87e-01 100 chrVIII:555726-556531 7.94e-01 100 chrVIII:556854-557192 1.68e-01 100 chrX:59013-59416 5.18e-01 100 chrX:73358-74560 8.67e-01 100 chrX:75234-76487 9.34e-01 100 chrX:89897-90451 6.92e-01 100 chrX:115700-116249 3.50e-07 24_[-1(2.28e-10)]_55 chrX:157436-157909 3.16e-01 100 chrX:196537-197526 4.85e-01 100 chrX:204515-205050 3.38e-06 8_[-2(6.52e-06)]_15_[+1(1.18e-07)]_\ 36 chrX:233705-234105 7.47e-01 100 chrX:354161-354533 3.68e-04 4_[+1(8.19e-08)]_75 chrX:355203-355736 3.38e-06 42_[-2(6.52e-06)]_15_[+1(1.18e-07)]_\ 2 chrX:374196-374848 5.73e-08 43_[-1(2.70e-09)]_15_[+2(4.48e-06)]_\ 1 chrX:378123-378585 5.67e-04 61_[-2(2.47e-07)]_19 chrX:390917-391624 9.78e-01 100 chrX:391803-392129 3.49e-03 76_[+3(6.46e-06)]_10 chrX:396578-396946 1.72e-09 23_[-1(1.38e-09)]_14_[+2(1.54e-07)]_\ 22 chrX:414785-416383 3.42e-02 12_[+3(2.92e-05)]_74 chrX:422722-423528 9.57e-01 100 chrX:424284-424729 1.99e-05 33_[+2(7.90e-09)]_47 chrX:517638-518092 8.36e-06 7_[-1(1.70e-06)]_15_[+2(1.73e-06)]_\ 37 chrX:523911-524439 3.14e-01 100 chrX:531605-532273 9.18e-01 100 chrX:538523-538734 6.79e-05 17_[+1(9.21e-09)]_62 chrX:540707-542559 9.16e-01 100 chrX:542765-543264 7.43e-07 1_[-1(8.19e-08)]_32_[+2(2.37e-06)]_\ 26 chrX:545408-545770 2.68e-03 17_[-3(8.62e-07)]_69 chrX:607712-608160 5.38e-01 100 chrX:617684-618140 3.44e-05 62_[-2(2.49e-09)]_18 chrX:651248-651604 1.09e-02 43_[+3(7.05e-06)]_11_[+3(6.59e-05)]_\ 18 chrX:652023-652590 5.39e-01 100 chrX:690571-690938 1.12e-04 9_[+3(1.27e-08)]_77 chrX:703246-703643 8.82e-04 56_[-3(2.10e-07)]_30 chrX:745098-745749 1.12e-03 72_[-2(2.03e-06)]_8 chrXI:775-1101 5.05e-01 100 chrXI:46711-47001 6.77e-01 100 chrXI:67795-68046 6.45e-03 41_[+3(7.66e-06)]_45 chrXI:74392-74798 4.24e-01 100 chrXI:84025-84410 2.50e-05 46_[-2(7.90e-09)]_34 chrXI:99751-99953 6.18e-02 38_[+3(2.36e-05)]_48 chrXI:107626-109646 8.35e-01 100 chrXI:140807-141469 8.82e-01 100 chrXI:141811-142823 6.86e-01 100 chrXI:158200-158641 4.31e-02 28_[+3(1.26e-05)]_58 chrXI:162433-162683 1.33e-02 24_[+2(4.48e-06)]_56 chrXI:202520-203240 2.66e-01 100 chrXI:219627-220113 3.12e-06 80_[-2(6.55e-10)] chrXI:302693-303333 2.49e-04 29_[+1(1.29e-07)]_50 chrXI:307944-308453 1.77e-08 5_[-1(1.30e-08)]_17_[+2(2.47e-07)]_\ 37 chrXI:311509-313996 2.01e-01 100 chrXI:379306-379913 3.24e-01 100 chrXI:382188-382455 8.06e-04 32_[+3(2.07e-06)]_54 chrXI:431372-431651 9.98e-04 31_[+3(1.62e-07)]_55 chrXI:457585-459296 6.81e-01 100 chrXI:490728-491213 8.09e-05 53_[-2(2.17e-08)]_27 chrXI:512611-513517 8.66e-01 100 chrXI:517785-518070 6.63e-01 100 chrXI:519528-520647 2.16e-01 100 chrXI:578722-579327 1.00e-05 55_[+1(3.49e-09)]_24 chrXI:614158-614411 3.36e-04 67_[+3(1.01e-07)]_19 chrXI:618745-619316 3.12e-04 3_[+2(7.40e-05)]_7_[-3(3.13e-06)]_\ 56 chrXI:666491-666801 5.10e-04 15_[-3(2.10e-07)]_14_[-3(8.41e-06)]_\ 27_[-3(2.10e-07)]_2 chrXII:52-238 7.70e-01 100 chrXII:47863-49517 7.86e-01 100 chrXII:64319-65235 9.47e-01 100 chrXII:81521-83309 2.92e-01 100 chrXII:83561-83727 1.24e-01 100 chrXII:92413-93211 8.33e-02 100 chrXII:95569-95867 6.46e-01 100 chrXII:110034-110936 4.76e-01 100 chrXII:167755-168241 8.10e-09 5_[-1(2.48e-06)]_25_[+2(4.01e-10)]_\ 29 chrXII:214662-215070 2.80e-07 76_[-1(8.15e-11)]_3 chrXII:232222-234088 7.49e-01 100 chrXII:241622-242021 8.39e-03 34_[+3(1.70e-06)]_7_[+3(9.11e-06)]_\ 31 chrXII:261110-262668 2.04e-01 100 chrXII:262849-263310 2.02e-01 100 chrXII:282604-283562 2.69e-01 100 chrXII:366046-366539 3.06e-01 100 chrXII:368768-369530 1.75e-01 100 chrXII:369698-370118 3.37e-01 100 chrXII:370594-370938 1.79e-03 69_[-3(2.20e-05)]_17 chrXII:374205-374671 1.57e-03 8_[+1(1.99e-07)]_71 chrXII:424178-424499 3.31e-02 18_[+3(1.08e-05)]_68 chrXII:426916-427442 3.38e-06 8_[-2(6.52e-06)]_15_[+1(1.18e-07)]_\ 36 chrXII:448524-448993 8.33e-01 100 chrXII:459602-460729 2.02e-01 100 chrXII:498298-499949 7.05e-01 100 chrXII:521455-522443 3.36e-01 100 chrXII:592102-592723 1.07e-01 78_[+2(9.14e-05)]_2 chrXII:605160-605640 2.35e-06 56_[+2(9.44e-09)]_24 chrXII:628148-629113 9.46e-01 100 chrXII:636767-639937 2.08e-01 100 chrXII:656843-657199 2.83e-06 9_[+2(6.55e-10)]_71 chrXII:673555-674253 2.28e-01 100 chrXII:687664-687906 9.19e-01 100 chrXII:710609-711482 6.71e-01 100 chrXII:713139-713634 1.06e-02 35_[-3(2.80e-06)]_51 chrXII:732007-732318 3.65e-04 47_[+1(2.48e-06)]_32 chrXII:734601-734947 6.85e-01 100 chrXII:780989-781891 6.66e-01 100 chrXII:783911-784514 3.43e-01 100 chrXII:793723-793997 9.05e-01 100 chrXII:796131-797486 9.19e-01 100 chrXII:805586-806809 8.81e-01 100 chrXII:818505-819139 9.26e-01 100 chrXII:837987-839245 3.03e-01 100 chrXII:875189-877029 3.19e-01 100 chrXII:897375-898210 1.11e-01 100 chrXII:903324-903649 2.80e-03 84_[+3(1.22e-06)]_2 chrXII:921724-923409 5.34e-02 100 chrXII:930545-931630 6.28e-01 100 chrXII:932055-932545 4.35e-04 8_[-3(1.36e-07)]_2_[-3(1.36e-07)]_\ 11_[-3(1.22e-06)]_37 chrXII:962838-963341 9.81e-02 100 chrXII:975794-976102 9.94e-01 100 chrXII:1018110-1019878 3.43e-01 100 chrXII:1028179-1028583 3.83e-03 65_[+3(1.22e-06)]_2_[-3(5.09e-05)]_\ 5 chrXII:1051969-1052225 1.27e-11 33_[-1(1.92e-10)]_17_[+2(5.47e-09)]_\ 9 chrXIII:91392-92271 3.84e-01 100 chrXIII:131568-132111 3.22e-05 45_[-1(2.70e-09)]_34 chrXIII:145886-146274 1.08e-05 52_[+3(5.76e-08)]_34 chrXIII:168273-169012 9.31e-01 100 chrXIII:195949-196301 2.59e-10 2_[-1(2.28e-10)]_46_[+2(7.10e-07)]_\ 11 chrXIII:224068-224501 7.86e-01 100 chrXIII:225154-225759 9.56e-01 100 chrXIII:259026-259442 3.55e-06 29_[+2(4.01e-10)]_51 chrXIII:290546-291243 6.02e-01 100 chrXIII:296758-298273 3.35e-01 100 chrXIII:298551-298902 1.06e-02 40_[+3(5.38e-06)]_46 chrXIII:302872-303733 2.90e-01 100 chrXIII:320993-321435 6.29e-06 29_[+2(6.55e-10)]_51 chrXIII:352085-352639 1.69e-05 27_[+1(6.46e-09)]_52 chrXIII:362937-364772 9.82e-01 100 chrXIII:372194-372764 1.77e-08 25_[-1(1.30e-08)]_17_[+2(2.47e-07)]_\ 17 chrXIII:378864-379625 6.30e-01 100 chrXIII:420348-420792 8.73e-05 77_[-1(1.30e-08)]_2 chrXIII:463428-463830 1.19e-03 15_[+1(1.18e-07)]_64 chrXIII:480416-480872 4.02e-11 36_[-1(3.16e-10)]_16_[+2(2.54e-08)]_\ 7 chrXIII:499462-500670 1.71e-01 100 chrXIII:504655-505176 1.28e-03 35_[-2(2.47e-07)]_45 chrXIII:551019-551810 6.28e-01 100 chrXIII:552521-553412 9.81e-01 100 chrXIII:572632-573252 1.37e-07 [-1(8.99e-08)]_16_[+2(2.77e-07)]_43 chrXIII:586358-587427 8.44e-01 100 chrXIII:650544-651124 7.59e-01 100 chrXIII:731570-732458 8.99e-02 100 chrXIII:747688-748140 5.73e-08 37_[-1(2.70e-09)]_15_[+2(4.48e-06)]_\ 7 chrXIII:753233-755274 9.80e-01 100 chrXIII:768180-768450 9.82e-01 100 chrXIII:808099-808525 4.73e-03 29_[+2(4.20e-06)]_51 chrXIII:837719-838206 7.43e-07 21_[-2(2.37e-06)]_32_[+1(8.19e-08)]_\ 6 chrXIII:873533-874189 5.75e-01 100 chrXIV:63098-63959 6.21e-01 100 chrXIV:95992-96471 4.17e-07 69_[-1(7.82e-10)]_10 chrXIV:102573-103106 5.27e-01 100 chrXIV:104615-105128 1.20e-04 25_[+1(1.16e-08)]_54 chrXIV:241389-241815 5.82e-02 9_[+3(3.89e-05)]_77 chrXIV:241976-242573 9.80e-01 100 chrXIV:302681-303928 7.56e-01 100 chrXIV:330682-331260 1.74e-02 27_[+3(9.11e-06)]_59 chrXIV:374651-375089 4.94e-04 54_[-2(1.05e-07)]_26 chrXIV:413604-414899 3.04e-02 24_[+1(4.24e-05)]_55 chrXIV:442852-443243 1.20e-03 14_[-2(2.47e-07)]_66 chrXIV:443408-444788 8.31e-01 100 chrXIV:495174-495877 3.14e-01 100 chrXIV:518804-519145 4.14e-01 100 chrXIV:546572-547362 6.07e-01 100 chrXIV:560317-560790 4.45e-01 100 chrXIV:568054-568472 8.62e-01 100 chrXIV:569500-570056 8.25e-02 47_[+3(7.47e-05)]_39 chrXIV:602060-602554 5.20e-05 60_[-2(5.47e-09)]_20 chrXIV:631696-632018 2.04e-09 48_[-1(6.80e-13)]_31 chrXIV:632493-632864 3.07e-04 13_[+1(7.46e-08)]_66 chrXIV:725852-726360 9.86e-01 100 chrXIV:783739-784322 4.98e-04 56_[-3(1.22e-06)]_9_[-3(2.10e-07)]_\ 7 chrXV:79722-80151 4.81e-03 61_[-3(9.83e-07)]_25 chrXV:92748-93816 9.08e-01 100 chrXV:94089-94794 2.76e-01 100 chrXV:109528-110641 5.59e-01 100 chrXV:110852-111203 1.11e-03 30_[+2(3.92e-06)]_50 chrXV:113540-113885 8.76e-01 100 chrXV:159242-159423 1.73e-01 100 chrXV:159585-160135 8.70e-01 100 chrXV:161103-161717 4.67e-01 100 chrXV:167972-168474 8.40e-03 14_[-3(5.38e-06)]_4_[+3(2.73e-05)]_\ 54 chrXV:216283-216703 5.58e-03 6_[+3(2.80e-06)]_10_[+3(1.61e-05)]_\ 56 chrXV:226533-226881 7.64e-01 100 chrXV:228097-228530 7.45e-04 73_[-2(1.20e-07)]_7 chrXV:253812-254095 3.34e-02 42_[+3(3.89e-05)]_18_[-3(1.26e-05)]_\ 12 chrXV:254295-254610 7.08e-01 100 chrXV:274239-275099 1.89e-06 59_[-2(1.01e-10)]_21 chrXV:282015-282361 1.72e-09 31_[-2(1.54e-07)]_14_[+1(1.38e-09)]_\ 14 chrXV:282547-283712 9.88e-02 69_[-2(6.61e-05)]_11 chrXV:287159-288421 2.50e-01 100 chrXV:300890-302302 1.03e-01 100 chrXV:340147-340605 1.55e-05 19_[+2(2.17e-08)]_61 chrXV:353924-354312 3.66e-04 19_[+2(4.01e-08)]_61 chrXV:408571-409623 9.78e-01 100 chrXV:411627-412281 6.88e-01 100 chrXV:438469-440032 1.03e-01 100 chrXV:444649-445794 2.97e-01 100 chrXV:445963-446216 1.82e-01 100 chrXV:464282-464850 1.45e-06 4_[+1(2.28e-10)]_75 chrXV:487435-487731 9.12e-01 100 chrXV:504888-505493 8.24e-01 100 chrXV:571728-572734 9.27e-01 100 chrXV:594307-594614 9.80e-01 100 chrXV:639158-639466 1.68e-06 54_[-3(1.68e-09)]_32 chrXV:663448-664774 3.82e-01 100 chrXV:678263-679158 9.26e-01 100 chrXV:710073-710507 7.70e-03 1_[+1(1.70e-06)]_78 chrXV:779681-780952 8.02e-01 100 chrXV:854047-854749 8.01e-01 100 chrXV:866510-867422 6.38e-01 100 chrXV:881742-882390 6.18e-01 100 chrXV:900314-901207 9.72e-01 100 chrXV:968105-968471 5.35e-03 30_[-3(3.71e-06)]_56 chrXV:976376-976620 7.38e-04 14_[+1(8.99e-08)]_65 chrXV:978815-979159 2.13e-02 [-3(2.73e-05)]_86 chrXV:979782-981310 7.05e-01 100 chrXV:1003989-1004384 7.35e-01 100 chrXV:1025692-1026068 8.37e-03 44_[+3(2.55e-06)]_42 chrXV:1027708-1029439 7.53e-01 100 chrXVI:55851-56350 5.38e-01 100 chrXVI:75311-76946 5.99e-01 100 chrXVI:135178-135833 1.95e-01 100 chrXVI:188356-188940 1.60e-02 21_[+1(1.35e-05)]_58 chrXVI:210012-210456 3.50e-07 17_[-1(2.28e-10)]_62 chrXVI:279969-280209 8.01e-04 73_[+3(1.73e-07)]_13 chrXVI:280564-281336 9.85e-01 100 chrXVI:281602-282291 5.45e-01 100 chrXVI:302654-304019 3.61e-01 100 chrXVI:338736-339139 3.82e-03 6_[+2(1.73e-06)]_74 chrXVI:378660-378998 3.65e-04 35_[-3(8.41e-06)]_11_[-3(1.22e-06)]_\ 26 chrXVI:406188-407768 9.71e-01 100 chrXVI:432527-434102 1.20e-01 100 chrXVI:435672-436210 1.58e-05 11_[-1(1.14e-06)]_15_[+2(4.20e-06)]_\ 33 chrXVI:519727-520547 2.40e-01 100 chrXVI:559986-560458 1.69e-05 35_[-1(6.46e-09)]_44 chrXVI:571551-571820 8.52e-01 100 chrXVI:571997-572523 9.33e-04 64_[-2(1.54e-07)]_16 chrXVI:578571-580279 3.90e-01 100 chrXVI:581851-582327 4.02e-11 28_[-2(2.54e-08)]_16_[+1(3.16e-10)]_\ 15 chrXVI:622282-622857 1.69e-05 30_[-1(6.46e-09)]_49 chrXVI:627257-627933 1.20e-01 45_[+3(5.80e-05)]_41 chrXVI:689373-689877 6.05e-03 40_[+1(9.67e-06)]_39 chrXVI:699768-700675 9.42e-02 100 chrXVI:731626-732773 8.54e-01 100 chrXVI:744093-744524 4.24e-07 31_[-2(1.34e-06)]_15_[+1(3.01e-07)]_\ 13 chrXVI:768448-768616 8.68e-01 100 chrXVI:768822-769493 3.38e-01 100 chrXVI:775646-776063 1.99e-02 6_[+2(4.20e-06)]_74 chrXVI:794486-794818 9.24e-03 33_[+3(4.44e-06)]_4_[+3(1.36e-06)]_\ 35 chrXVI:794981-795162 4.17e-01 100 chrXVI:810576-810868 5.07e-08 9_[-2(1.20e-07)]_17_[+1(7.46e-08)]_\ 33 chrXVI:819343-819824 1.31e-11 1_[-2(5.47e-09)]_17_[+1(1.92e-10)]_\ 41 chrXVI:856800-857120 7.02e-06 33_[+1(7.82e-10)]_46 chrXVI:860116-860685 1.72e-09 34_[-2(1.54e-07)]_14_[+1(1.38e-09)]_\ 11 chrXVI:879428-880536 3.01e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************