******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ZAP1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71770-73676 1.0000 100 chrI:81904-82334 1.0000 100 chrI:138965-139373 1.0000 100 chrI:142152-143715 1.0000 100 chrI:166169-166611 1.0000 100 chrI:169410-170555 1.0000 100 chrI:181122-181504 1.0000 100 chrI:182231-183193 1.0000 100 chrII:9444-9986 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100 chrXV:252838-254695 1.0000 100 chrXV:274451-275009 1.0000 100 chrXV:281954-282623 1.0000 100 chrXV:287299-288438 1.0000 100 chrXV:300884-301725 1.0000 100 chrXV:340112-340744 1.0000 100 chrXV:353894-354318 1.0000 100 chrXV:407603-408233 1.0000 100 chrXV:438439-439030 1.0000 100 chrXV:444607-446209 1.0000 100 chrXV:464274-464719 1.0000 100 chrXV:487429-487767 1.0000 100 chrXV:504981-505504 1.0000 100 chrXV:505697-507023 1.0000 100 chrXV:571707-572160 1.0000 100 chrXV:594308-594679 1.0000 100 chrXV:639150-639499 1.0000 100 chrXV:663437-664247 1.0000 100 chrXV:678040-679171 1.0000 100 chrXV:710117-710489 1.0000 100 chrXV:722971-724699 1.0000 100 chrXV:758961-759599 1.0000 100 chrXV:779658-780996 1.0000 100 chrXV:832229-832847 1.0000 100 chrXV:853956-854809 1.0000 100 chrXV:866524-868109 1.0000 100 chrXV:899754-901251 1.0000 100 chrXV:901444-901673 1.0000 100 chrXV:925215-925432 1.0000 100 chrXV:968128-968423 1.0000 100 chrXV:976375-976706 1.0000 100 chrXV:978801-979160 1.0000 100 chrXV:979738-981305 1.0000 100 chrXV:1003913-1004993 1.0000 100 chrXV:1025716-1026052 1.0000 100 chrXV:1027825-1029548 1.0000 100 chrXV:1091123-1091290 1.0000 100 chrXVI:55847-56434 1.0000 100 chrXVI:75149-76864 1.0000 100 chrXVI:108585-114762 1.0000 100 chrXVI:134284-135834 1.0000 100 chrXVI:172841-174083 1.0000 100 chrXVI:188595-188933 1.0000 100 chrXVI:209698-210498 1.0000 100 chrXVI:215423-216141 1.0000 100 chrXVI:280020-280246 1.0000 100 chrXVI:280535-283275 1.0000 100 chrXVI:302632-304350 1.0000 100 chrXVI:310412-311191 1.0000 100 chrXVI:338603-339161 1.0000 100 chrXVI:340482-340776 1.0000 100 chrXVI:378634-379011 1.0000 100 chrXVI:404534-407782 1.0000 100 chrXVI:435665-436198 1.0000 100 chrXVI:519281-520545 1.0000 100 chrXVI:559905-560516 1.0000 100 chrXVI:572173-572609 1.0000 100 chrXVI:581816-582361 1.0000 100 chrXVI:592254-592974 1.0000 100 chrXVI:622278-622866 1.0000 100 chrXVI:642279-643359 1.0000 100 chrXVI:689355-689875 1.0000 100 chrXVI:692825-695043 1.0000 100 chrXVI:699844-700681 1.0000 100 chrXVI:701887-702319 1.0000 100 chrXVI:718353-719741 1.0000 100 chrXVI:730940-731327 1.0000 100 chrXVI:731635-732310 1.0000 100 chrXVI:744072-744623 1.0000 100 chrXVI:768406-769503 1.0000 100 chrXVI:775630-776045 1.0000 100 chrXVI:794458-796095 1.0000 100 chrXVI:810572-811839 1.0000 100 chrXVI:819310-820274 1.0000 100 chrXVI:821643-822199 1.0000 100 chrXVI:856713-857163 1.0000 100 chrXVI:860154-860717 1.0000 100 chrXVI:866457-866740 1.0000 100 chrXVI:879748-880576 1.0000 100 chrXVI:941339-942846 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ZAP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ZAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ZAP1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 596 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59600 N= 596 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.300 C 0.200 G 0.200 T 0.300 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ZAP1/background): A 0.309 C 0.191 G 0.191 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF AGRTCCBSGGTTCGATYCCSV MEME-1 width = 21 sites = 101 llr = 1719 E-value = 1.4e-344 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6233:3:12::::3a2::1:2 pos.-specific C 11:17633::::a::25a764 probability G 377::1467a:::7:1:::44 matrix T :::73:2:::aa:::55:2:: bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 **** * * Relative 1.4 ****** * Entropy 1.2 * * ****** * * (24.6 bits) 1.0 ** * ******* **** 0.7 ** ** ******** ***** 0.5 *************** ***** 0.2 ********************* 0.0 --------------------- Multilevel AGGTCCGGGGTTCGATTCCCC consensus G AATACCA A C TGG sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123325-123827 - 60 2.85e-12 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCCCA chrIV:1075262-1075760 - 20 9.17e-11 CACACGGCAA AGGTCCCGAGTTCGATCCTCG GTTGGAACAT chrXVI:581816-582361 + 67 1.51e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrXIV:602091-602569 + 76 1.51e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGA chrXIV:569623-570088 - 71 1.51e-10 ATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXIII:480377-480837 - 73 1.51e-10 AATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrX:414787-415277 + 27 1.51e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrVI:226486-226919 - 45 1.51e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrV:551014-551569 - 53 1.51e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:435550-436031 - 21 1.51e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrV:311708-312303 - 77 1.51e-10 AAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAA chrIX:299983-300491 - 50 1.51e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrIV:1201514-1202073 + 50 1.51e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrIV:667724-668280 - 64 1.51e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrII:197247-197859 + 35 1.51e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXVI:860154-860717 + 35 1.77e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrXV:226404-226909 - 14 1.77e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAA chrX:531526-532278 + 17 1.77e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrVII:845376-846028 + 38 1.77e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAA chrVI:180672-181278 - 58 1.77e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrX:115661-116246 - 45 2.09e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrVII:401400-401622 - 75 2.09e-10 CCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:487085-487627 - 34 2.09e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:176898-177468 + 8 2.09e-10 CACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIX:370215-370767 + 18 2.09e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIX:197364-197897 + 54 2.09e-10 TCTCACCGTG GAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrIV:1016950-1017526 - 28 2.09e-10 TCTCACCGTG GAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrIII:82369-82667 - 3 2.09e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GT chrII:644935-645443 + 70 2.09e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIV:1256798-1257306 - 15 5.88e-10 TCCCAAGCAT GGGGCCCGGGTTCGATTCCCG GCTTCCGCAT chrXVI:856713-857163 + 57 6.78e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrXIV:95999-96477 - 62 6.78e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCG TACCGCTCAA chrXI:219700-220140 + 68 6.78e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrVII:779383-779932 + 51 6.78e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCG TACCGCTCAA chrVII:774091-774748 + 23 6.78e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrIV:410147-410778 + 10 6.78e-10 GCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrIV:488441-489155 - 58 1.51e-09 TACACGGCGA AGATCCCGAGTTCGAACCTCG GTTGGATCAG chrII:326449-327111 - 71 1.51e-09 ACACGGCGA AGATCCCGAGTTCGAACCTCG GTTGGATCAA chrXV:464274-464719 + 76 1.94e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTC chrXIII:195920-196315 - 10 1.94e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCC chrXV:663437-664247 - 29 2.48e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:586353-586912 - 63 2.48e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:420319-420874 - 51 2.48e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXI:307900-308467 - 20 2.48e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrX:378215-378608 + 43 2.48e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrVII:823337-823731 + 42 2.48e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrVII:411969-412592 - 73 2.48e-09 ACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrV:438526-438985 + 39 2.48e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrXV:438439-439030 + 25 3.15e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXI:578747-579381 + 17 3.15e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrVIII:134085-134676 + 33 3.54e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrV:130835-131369 - 39 3.54e-09 TTTGATCCGA ACAACCCCGGTTCGAATCCGG GTAAGACCTA chrIII:168095-168571 - 27 3.54e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrII:350593-351142 + 52 3.54e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAAGACCTT chrXIII:747667-748168 - 34 3.98e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrXIII:131596-132111 - 31 3.98e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXI:162250-162763 - 40 3.98e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrX:374171-374833 - 63 3.98e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrX:355177-355744 + 6 3.98e-09 TCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXIII:463329-463904 + 30 1.17e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXII:426890-427466 + 46 1.17e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXI:513056-513605 - 61 1.17e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrX:540701-542358 + 71 1.17e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAG chrX:204537-205042 + 38 1.17e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrVII:531269-531988 + 74 1.17e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCG chrIX:336059-336632 - 63 1.17e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrIV:568652-569337 + 62 1.17e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrII:405666-406361 + 39 1.17e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXIII:808025-808559 - 13 1.75e-08 TCTGATCCGA ACAACCCCAGTTCGAATCCGG GTGGGACCTT chrXVI:622278-622866 - 27 1.93e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACA GAATTCGCAT chrXVI:559905-560516 - 47 1.93e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACA GAATTCGCAT chrXIV:374666-375142 + 76 1.93e-08 AGTCATCTGG AGGTCCTGTGTTCGATCCACA GAGT chrVIII:358257-358797 - 10 1.93e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACA GAATTCGCA chrIV:1095122-1095660 - 38 1.93e-08 AGATATCTGG AGGTCCTGTGTTCGATCCACA GAGTTCGCAT chrXIV:560542-560923 - 20 2.33e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrVIII:115837-116403 - 46 2.33e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIX:174566-175525 + 79 2.33e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA T chrII:266179-266708 + 28 2.33e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrXIII:572580-573166 - 69 3.36e-08 CATAATCTGA AGGTCGAGAGTTCGAACCTCC CCTGGAGCAC chrX:422690-423264 + 53 3.36e-08 CATAATCTGA AGGTCGAGAGTTCGAACCTCC CCTGGAGCAC chrX:390804-391339 - 31 3.36e-08 CATAATCTGA AGGTCGAGAGTTCGAACCTCC CCTGGAGCAT chrIV:884245-884653 + 65 3.36e-08 AGCAACGCGA CCGTCGTGGGTTCAAACCCCA CCTCGAGCAC chrXV:228083-228648 + 60 6.70e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXIV:632405-632930 + 26 6.70e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXII:975743-976213 - 64 6.70e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVII:730948-731460 + 27 6.70e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVIII:466806-467282 + 38 1.17e-07 TGTAATGCAA AGGTCGCTAGTTCAATTCTGG CAGGTGGCAT chrXIII:837727-838273 + 37 1.36e-07 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrIV:946120-946675 + 24 1.36e-07 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrXIII:379006-379656 - 31 1.69e-07 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTTCAA chrX:415715-416247 - 9 1.69e-07 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTTC chrXII:374198-374695 + 2 1.95e-07 A AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrV:492192-492574 - 28 1.95e-07 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGG chrIV:619696-620200 - 80 1.95e-07 . AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrXVI:744072-744623 + 29 3.59e-07 TGTAATGCAA AGGTCGTTAGTTCAATTCTGA CAGGTGGCAA chrXVI:435665-436198 - 21 3.82e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrII:642835-643262 - 18 3.82e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrX:424228-424722 + 11 4.07e-07 AAATACTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrIV:519650-519967 - 44 4.07e-07 AGTTATTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrII:347392-347964 - 34 4.07e-07 TATTACTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrXIV:330773-331663 + 20 3.95e-06 CTTTTGCCCG GGAAAGGCGGTTCAATCTACC TTCGAAGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123325-123827 2.9e-12 59_[-1]_20 chrIV:1075262-1075760 9.2e-11 19_[-1]_60 chrXVI:581816-582361 1.5e-10 66_[+1]_13 chrXIV:602091-602569 1.5e-10 75_[+1]_4 chrXIV:569623-570088 1.5e-10 70_[-1]_9 chrXIII:480377-480837 1.5e-10 72_[-1]_7 chrX:414787-415277 1.5e-10 26_[+1]_53 chrVI:226486-226919 1.5e-10 44_[-1]_35 chrV:551014-551569 1.5e-10 52_[-1]_27 chrV:435550-436031 1.5e-10 20_[-1]_59 chrV:311708-312303 1.5e-10 76_[-1]_3 chrIX:299983-300491 1.5e-10 49_[-1]_30 chrIV:1201514-1202073 1.5e-10 49_[+1]_30 chrIV:667724-668280 1.5e-10 63_[-1]_16 chrII:197247-197859 1.5e-10 34_[+1]_45 chrXVI:860154-860717 1.8e-10 34_[+1]_45 chrXV:226404-226909 1.8e-10 13_[-1]_66 chrX:531526-532278 1.8e-10 16_[+1]_63 chrVII:845376-846028 1.8e-10 37_[+1]_42 chrVI:180672-181278 1.8e-10 57_[-1]_22 chrX:115661-116246 2.1e-10 44_[-1]_35 chrVII:401400-401622 2.1e-10 74_[-1]_5 chrV:487085-487627 2.1e-10 33_[-1]_46 chrV:176898-177468 2.1e-10 7_[+1]_72 chrIX:370215-370767 2.1e-10 17_[+1]_62 chrIX:197364-197897 2.1e-10 53_[+1]_26 chrIV:1016950-1017526 2.1e-10 27_[-1]_52 chrIII:82369-82667 2.1e-10 2_[-1]_77 chrII:644935-645443 2.1e-10 69_[+1]_10 chrIV:1256798-1257306 5.9e-10 14_[-1]_65 chrXVI:856713-857163 6.8e-10 56_[+1]_23 chrXIV:95999-96477 6.8e-10 61_[-1]_18 chrXI:219700-220140 6.8e-10 67_[+1]_12 chrVII:779383-779932 6.8e-10 50_[+1]_29 chrVII:774091-774748 6.8e-10 22_[+1]_57 chrIV:410147-410778 6.8e-10 9_[+1]_70 chrIV:488441-489155 1.5e-09 57_[-1]_22 chrII:326449-327111 1.5e-09 70_[-1]_9 chrXV:464274-464719 1.9e-09 75_[+1]_4 chrXIII:195920-196315 1.9e-09 9_[-1]_70 chrXV:663437-664247 2.5e-09 28_[-1]_51 chrXIII:586353-586912 2.5e-09 62_[-1]_17 chrXIII:420319-420874 2.5e-09 50_[-1]_29 chrXI:307900-308467 2.5e-09 19_[-1]_60 chrX:378215-378608 2.5e-09 42_[+1]_37 chrVII:823337-823731 2.5e-09 41_[+1]_38 chrVII:411969-412592 2.5e-09 72_[-1]_7 chrV:438526-438985 2.5e-09 38_[+1]_41 chrXV:438439-439030 3.2e-09 24_[+1]_55 chrXI:578747-579381 3.2e-09 16_[+1]_63 chrVIII:134085-134676 3.5e-09 32_[+1]_47 chrV:130835-131369 3.5e-09 38_[-1]_41 chrIII:168095-168571 3.5e-09 26_[-1]_53 chrII:350593-351142 3.5e-09 51_[+1]_28 chrXIII:747667-748168 4e-09 33_[-1]_46 chrXIII:131596-132111 4e-09 30_[-1]_49 chrXI:162250-162763 4e-09 39_[-1]_40 chrX:374171-374833 4e-09 62_[-1]_17 chrX:355177-355744 4e-09 5_[+1]_74 chrXIII:463329-463904 1.2e-08 29_[+1]_50 chrXII:426890-427466 1.2e-08 45_[+1]_34 chrXI:513056-513605 1.2e-08 60_[-1]_19 chrX:540701-542358 1.2e-08 70_[+1]_9 chrX:204537-205042 1.2e-08 37_[+1]_42 chrVII:531269-531988 1.2e-08 73_[+1]_6 chrIX:336059-336632 1.2e-08 62_[-1]_17 chrIV:568652-569337 1.2e-08 61_[+1]_18 chrII:405666-406361 1.2e-08 38_[+1]_41 chrXIII:808025-808559 1.7e-08 12_[-1]_67 chrXVI:622278-622866 1.9e-08 26_[-1]_53 chrXVI:559905-560516 1.9e-08 46_[-1]_33 chrXIV:374666-375142 1.9e-08 75_[+1]_4 chrVIII:358257-358797 1.9e-08 9_[-1]_70 chrIV:1095122-1095660 1.9e-08 37_[-1]_42 chrXIV:560542-560923 2.3e-08 19_[-1]_60 chrVIII:115837-116403 2.3e-08 45_[-1]_34 chrIX:174566-175525 2.3e-08 78_[+1]_1 chrII:266179-266708 2.3e-08 27_[+1]_52 chrXIII:572580-573166 3.4e-08 68_[-1]_11 chrX:422690-423264 3.4e-08 52_[+1]_27 chrX:390804-391339 3.4e-08 30_[-1]_49 chrIV:884245-884653 3.4e-08 64_[+1]_15 chrXV:228083-228648 6.7e-08 59_[+1]_20 chrXIV:632405-632930 6.7e-08 25_[+1]_54 chrXII:975743-976213 6.7e-08 63_[-1]_16 chrVII:730948-731460 6.7e-08 26_[+1]_53 chrVIII:466806-467282 1.2e-07 37_[+1]_42 chrXIII:837727-838273 1.4e-07 36_[+1]_43 chrIV:946120-946675 1.4e-07 23_[+1]_56 chrXIII:379006-379656 1.7e-07 30_[-1]_49 chrX:415715-416247 1.7e-07 8_[-1]_71 chrXII:374198-374695 2e-07 1_[+1]_78 chrV:492192-492574 2e-07 27_[-1]_52 chrIV:619696-620200 2e-07 79_[-1] chrXVI:744072-744623 3.6e-07 28_[+1]_51 chrXVI:435665-436198 3.8e-07 20_[-1]_59 chrII:642835-643262 3.8e-07 17_[-1]_62 chrX:424228-424722 4.1e-07 10_[+1]_69 chrIV:519650-519967 4.1e-07 43_[-1]_36 chrII:347392-347964 4.1e-07 33_[-1]_46 chrXIV:330773-331663 4e-06 19_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRTCCBSGGTTCGATYCCSV width=21 seqs=101 chrIII:123325-123827 ( 60) AGGTCCCGGGTTCGAGTCCCG 1 chrIV:1075262-1075760 ( 20) AGGTCCCGAGTTCGATCCTCG 1 chrXVI:581816-582361 ( 67) AGGTTAGGGGTTCGAGCCCCC 1 chrXIV:602091-602569 ( 76) GGATCAGCGGTTCGATCCCGC 1 chrXIV:569623-570088 ( 71) GGATCAGCGGTTCGATCCCGC 1 chrXIII:480377-480837 ( 73) AGGTTAGGGGTTCGAGCCCCC 1 chrX:414787-415277 ( 27) AGGTTAGGGGTTCGAGCCCCC 1 chrVI:226486-226919 ( 45) AGGTTAGGGGTTCGAGCCCCC 1 chrV:551014-551569 ( 53) GGATCAGCGGTTCGATCCCGC 1 chrV:435550-436031 ( 21) AGGTTAGGGGTTCGAGCCCCC 1 chrV:311708-312303 ( 77) AGGTCATCGGTTCGATTCCGG 1 chrIX:299983-300491 ( 50) AGGTTAGGGGTTCGAGCCCCC 1 chrIV:1201514-1202073 ( 50) AGGTTAGGGGTTCGAGCCCCC 1 chrIV:667724-668280 ( 64) GGATCAGCGGTTCGATCCCGC 1 chrII:197247-197859 ( 35) GGATCAGCGGTTCGATCCCGC 1 chrXVI:860154-860717 ( 35) GGGCCCCCGGTTCGATTCCGG 1 chrXV:226404-226909 ( 14) GGGCCCCCGGTTCGATTCCGG 1 chrX:531526-532278 ( 17) GGGCCCCCGGTTCGATTCCGG 1 chrVII:845376-846028 ( 38) GGGCCCCCGGTTCGATTCCGG 1 chrVI:180672-181278 ( 58) GGGCCCCCGGTTCGATTCCGG 1 chrX:115661-116246 ( 45) GAGACCGGGGTTCGACTCCCC 1 chrVII:401400-401622 ( 75) GAGACCGGGGTTCGACTCCCC 1 chrV:487085-487627 ( 34) GAGACCGGGGTTCGACTCCCC 1 chrV:176898-177468 ( 8) GAGACCGGGGTTCGACTCCCC 1 chrIX:370215-370767 ( 18) GAGACCGGGGTTCGACTCCCC 1 chrIX:197364-197897 ( 54) GAGACCGGGGTTCGACTCCCC 1 chrIV:1016950-1017526 ( 28) GAGACCGGGGTTCGACTCCCC 1 chrIII:82369-82667 ( 3) GAGACCGGGGTTCGACTCCCC 1 chrII:644935-645443 ( 70) GAGACCGGGGTTCGACTCCCC 1 chrIV:1256798-1257306 ( 15) GGGGCCCGGGTTCGATTCCCG 1 chrXVI:856713-857163 ( 57) AGGTCTCCGGTTCGATTCCGG 1 chrXIV:95999-96477 ( 62) GGGACACGGGTTCGATTCTCG 1 chrXI:219700-220140 ( 68) AGGTCTCCGGTTCGATTCCGG 1 chrVII:779383-779932 ( 51) GGGACACGGGTTCGATTCTCG 1 chrVII:774091-774748 ( 23) AGGTCTCCGGTTCGATTCCGG 1 chrIV:410147-410778 ( 10) AGGTCTCCGGTTCGATTCCGG 1 chrIV:488441-489155 ( 58) AGATCCCGAGTTCGAACCTCG 1 chrII:326449-327111 ( 71) AGATCCCGAGTTCGAACCTCG 1 chrXV:464274-464719 ( 76) AGGCCCTGGGTTCAATTCCCA 1 chrXIII:195920-196315 ( 10) AGGCCCTGGGTTCAATTCCCA 1 chrXV:663437-664247 ( 29) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:586353-586912 ( 63) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:420319-420874 ( 51) ACGTCCCCAGTTCGATCCTGG 1 chrXI:307900-308467 ( 20) ACGTCCCCAGTTCGATCCTGG 1 chrX:378215-378608 ( 43) ACGTCCCCAGTTCGATCCTGG 1 chrVII:823337-823731 ( 42) ACGTCCCCAGTTCGATCCTGG 1 chrVII:411969-412592 ( 73) ACGTCCCCAGTTCGATCCTGG 1 chrV:438526-438985 ( 39) ACGTCCCCAGTTCGATCCTGG 1 chrXV:438439-439030 ( 25) ATGTCAGGGGTTCGAGCCCCC 1 chrXI:578747-579381 ( 17) ATGTCAGGGGTTCGAGCCCCC 1 chrVIII:134085-134676 ( 33) ACAACCCCGGTTCGAATCCGG 1 chrV:130835-131369 ( 39) ACAACCCCGGTTCGAATCCGG 1 chrIII:168095-168571 ( 27) ACAACCCCGGTTCGAATCCGG 1 chrII:350593-351142 ( 52) ACAACCCCGGTTCGAATCCGG 1 chrXIII:747667-748168 ( 34) AGATTATGGGTTCGACCCCCA 1 chrXIII:131596-132111 ( 31) AGATTATGGGTTCGACCCCCA 1 chrXI:162250-162763 ( 40) AGATTATGGGTTCGACCCCCA 1 chrX:374171-374833 ( 63) AGATTATGGGTTCGACCCCCA 1 chrX:355177-355744 ( 6) AGATTATGGGTTCGACCCCCA 1 chrXIII:463329-463904 ( 30) CAGATCGGGGTTCAATTCCCC 1 chrXII:426890-427466 ( 46) CAGATCGGGGTTCAATTCCCC 1 chrXI:513056-513605 ( 61) CAGATCGGGGTTCAATTCCCC 1 chrX:540701-542358 ( 71) CAGATCGGGGTTCAATTCCCC 1 chrX:204537-205042 ( 38) CAGATCGGGGTTCAATTCCCC 1 chrVII:531269-531988 ( 74) CAGATCGGGGTTCAATTCCCC 1 chrIX:336059-336632 ( 63) CAGATCGGGGTTCAATTCCCC 1 chrIV:568652-569337 ( 62) CAGATCGGGGTTCAATTCCCC 1 chrII:405666-406361 ( 39) CAGATCGGGGTTCAATTCCCC 1 chrXIII:808025-808559 ( 13) ACAACCCCAGTTCGAATCCGG 1 chrXVI:622278-622866 ( 27) AGGTCCTGTGTTCGATCCACA 1 chrXVI:559905-560516 ( 47) AGGTCCTGTGTTCGATCCACA 1 chrXIV:374666-375142 ( 76) AGGTCCTGTGTTCGATCCACA 1 chrVIII:358257-358797 ( 10) AGGTCCTGTGTTCGATCCACA 1 chrIV:1095122-1095660 ( 38) AGGTCCTGTGTTCGATCCACA 1 chrXIV:560542-560923 ( 20) AGATCATCGGTTCAAATCCGA 1 chrVIII:115837-116403 ( 46) AGATCATCGGTTCAAATCCGA 1 chrIX:174566-175525 ( 79) AGATCATCGGTTCAAATCCGA 1 chrII:266179-266708 ( 28) AGATCATCGGTTCAAATCCGA 1 chrXIII:572580-573166 ( 69) AGGTCGAGAGTTCGAACCTCC 1 chrX:422690-423264 ( 53) AGGTCGAGAGTTCGAACCTCC 1 chrX:390804-391339 ( 31) AGGTCGAGAGTTCGAACCTCC 1 chrIV:884245-884653 ( 65) CCGTCGTGGGTTCAAACCCCA 1 chrXV:228083-228648 ( 60) AGATCGTGAGTTCAACCCTCA 1 chrXIV:632405-632930 ( 26) AGATCGTGAGTTCAACCCTCA 1 chrXII:975743-976213 ( 64) AGATCGTGAGTTCAACCCTCA 1 chrVII:730948-731460 ( 27) AGATCGTGAGTTCAACCCTCA 1 chrVIII:466806-467282 ( 38) AGGTCGCTAGTTCAATTCTGG 1 chrXIII:837727-838273 ( 37) AGATCGGGCGTTCGACTCGCC 1 chrIV:946120-946675 ( 24) AGATCGGGCGTTCGACTCGCC 1 chrXIII:379006-379656 ( 31) GGGTTGCAGGTTCAATTCCTG 1 chrX:415715-416247 ( 9) GGGTTGCAGGTTCAATTCCTG 1 chrXII:374198-374695 ( 2) AGATTCCAGGTTCAAGTCCTG 1 chrV:492192-492574 ( 28) AGATTCCAGGTTCAAGTCCTG 1 chrIV:619696-620200 ( 80) AGATTCCAGGTTCAAGTCCTG 1 chrXVI:744072-744623 ( 29) AGGTCGTTAGTTCAATTCTGA 1 chrXVI:435665-436198 ( 21) TGGTCCTTAGTTCGATCCTGA 1 chrII:642835-643262 ( 18) TGGTCCTTAGTTCGATCCTGA 1 chrX:424228-424722 ( 11) GGATGCGAGGTTCGAACTCGC 1 chrIV:519650-519967 ( 44) GGATGCGAGGTTCGAACTCGC 1 chrII:347392-347964 ( 34) GGATGCGAGGTTCGAACTCGC 1 chrXIV:330773-331663 ( 20) GGAAAGGCGGTTCAATCTACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47680 bayes= 10.992 E= 1.4e-344 97 -95 54 -396 -79 -46 179 -396 12 -1330 179 -1330 -26 -146 -427 110 -496 188 -269 -26 -26 154 -36 -296 -338 86 98 -32 -196 77 154 -296 -44 -327 188 -264 -1330 -1330 239 -1330 -1330 -1330 -1330 170 -1330 -1330 -1330 170 -1330 239 -1330 -1330 -16 -1330 192 -1330 170 -1330 -1330 -1330 -79 5 -57 68 -1330 134 -1330 74 -1330 233 -1330 -296 -238 184 -327 -38 -1330 156 101 -264 -38 109 90 -1330 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 101 E= 1.4e-344 0.603960 0.099010 0.277228 0.019802 0.178218 0.138614 0.663366 0.019802 0.336634 0.000000 0.663366 0.000000 0.257426 0.069307 0.009901 0.663366 0.009901 0.702970 0.029703 0.257426 0.257426 0.554455 0.148515 0.039604 0.029703 0.346535 0.376238 0.247525 0.079208 0.326733 0.554455 0.039604 0.227723 0.019802 0.702970 0.049505 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.277228 0.000000 0.722772 0.000000 1.000000 0.000000 0.000000 0.000000 0.178218 0.198020 0.128713 0.495050 0.000000 0.485149 0.000000 0.514851 0.000000 0.960396 0.000000 0.039604 0.059406 0.683168 0.019802 0.237624 0.000000 0.564356 0.386139 0.049505 0.237624 0.405941 0.356436 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSV MEME-1 regular expression -------------------------------------------------------------------------------- [AG]G[GA][TA][CT][CA][GCT][GC][GA]GTTC[GA]AT[TC]C[CT][CG][CGA] -------------------------------------------------------------------------------- Time 348.35 secs. ******************************************************************************** ******************************************************************************** MOTIF CSNNSVCYYWWMCCACTVVGCCAHVVVVSC MEME-2 width = 30 sites = 77 llr = 1209 E-value = 7.0e-180 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSNNSVCYYWWMCCACTVVGCCAHVVVVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :133221:1355:2a::433::a3423311 pos.-specific C 532244533214a7:8:23:a7:4333258 probability G 253244222:2::1:::347::::34444: matrix T 2222::254531:::2a1:::3:3111111 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 * *** * * Entropy 1.2 * *** **** * (22.6 bits) 1.0 ***** **** * 0.7 * ***** ***** ** 0.5 ** **** ****** ****** ** 0.2 ** ****** ******************* 0.0 ------------------------------ Multilevel CGGACGCTTTAACCACTAGGCCACAGGGCC consensus TCATGCTCCATC A T GAA T AGCCAG sequence G CGAA C TCAAC C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSVCYYWWMCCACTVVGCCAHVVVVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:856713-857163 - 14 2.00e-11 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC GAATCTTGTT chrXII:656818-657214 + 11 2.00e-11 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC AATTTTCTTG chrXI:219700-220140 - 25 2.00e-11 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC TATTTACTGT chrXIV:602091-602569 - 32 2.41e-11 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC ATTGTTATCT chrXII:734591-735018 - 48 2.41e-11 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC AAACTTTGTT chrIX:183288-183779 + 1 2.41e-11 . CGGTGCCTTAACCAACTGGGCCAAGAGACC AGGAATTTGT chrIV:1150718-1151168 + 19 4.65e-10 GAAATAGCAG GCATCGCCTTAACCACTCGGCCACTGGGAC TGAAACACTT chrXIII:258944-259446 + 65 5.38e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC ATACTA chrXII:592341-592820 + 60 5.38e-10 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTATGTT chrXII:167743-168264 + 43 5.38e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC ATATGACTAT chrX:617689-618163 - 43 5.38e-10 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTTTGTT chrIV:1305369-1305873 - 59 5.38e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC TTAATTTGTA chrIV:437546-438050 - 24 5.38e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC TTACTAATGA chrXII:962810-963303 + 20 7.17e-10 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrXI:83969-84462 - 43 7.17e-10 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATACAAATTT chrX:424228-424722 + 61 7.17e-10 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrXV:353894-354318 + 28 1.63e-09 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC AGTAAACCGT chrXIV:560542-560923 + 54 1.63e-09 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC CCGTTATTAC chrIX:174566-175525 - 36 1.63e-09 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC TCGTACTTGT chrXV:464274-464719 - 4 2.75e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTG chrXIV:546535-547676 - 39 2.75e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC GATTATTTCG chrXII:92258-92877 - 31 2.75e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTATTAACTT chrI:138965-139373 - 33 2.75e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC GTACTAATTG chrXIV:374666-375142 - 15 6.48e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAGTCCGC TTATTTTTCT chrVII:1004013-1004436 - 42 6.48e-09 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC AAACCCTTGA chrVII:661523-661995 - 40 6.48e-09 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC AAATTTTTAC chrVII:115313-115729 - 17 7.29e-09 GCTTAAAAGC CGAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrXVI:338603-339161 + 58 8.20e-09 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT GCTAAATCAT chrX:517639-518098 + 37 8.20e-09 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT TAACTTTTAT chrV:99901-100344 - 61 8.20e-09 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT TAGCCAACTT chrIII:149716-150208 - 8 8.20e-09 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT CAACATT chrVIII:358257-358797 + 63 9.20e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATT chrVIII:237671-238146 + 52 9.20e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrXIII:808025-808559 + 46 1.29e-08 GGATCAGAAC CGAAAGTGATAACCACTACACTATAGGACC TTTTTCTTCT chrV:249776-250760 - 68 1.29e-08 AAC CGAAAGTGATAACCACTACACTATAGGACC AGTACAACTG chrIV:802556-803033 + 29 1.29e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC GACAATTCAT chrIV:520720-521189 - 68 1.29e-08 AAC CGAAAGTGATAACCACTACACTATAGGACC CTAAAATGGA chrIII:168095-168571 + 60 1.29e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC AGGACTTCTT chrXVI:581816-582361 - 24 2.00e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TCTTTTGTTG chrXV:228083-228648 - 16 2.00e-08 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TAATATTTTA chrXI:74328-74879 - 71 2.00e-08 . GCACGCCTTAACCAACTTGGCCATGGAGTC TAATTGCTAT chrV:435550-436031 + 55 2.00e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TCTTATTGTT chrIV:1201514-1202073 - 7 2.00e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TATTTA chrIII:127474-127916 - 71 2.00e-08 . GCACGCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrXV:226404-226909 + 46 2.23e-08 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TGAATTTCTT chrX:396584-397020 + 15 2.23e-08 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTACTTTTGA chrXVI:775630-776045 + 20 2.48e-08 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTTGAATTA chrXVI:435665-436198 + 54 2.48e-08 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTTGTTGTA chrII:642835-643262 + 51 2.48e-08 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTCTATTAC chrX:233687-234209 - 41 3.05e-08 GGTTCGTAGC CAGACGCCGTGACCATTGGGCCACGAGGAA CAAGAATATA chrV:492192-492574 + 62 3.05e-08 GGTTCGTAGC CAGACGCCGTGACCATTGGGCCACGAGGAA TAGGATGTT chrX:422690-423264 - 10 4.15e-08 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC ATACAAAGG chrX:390804-391339 + 65 4.15e-08 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC ACTATT chrXIII:747667-748168 + 67 6.78e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAGT chrXIII:131596-132111 + 64 6.78e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAAATTT chrVII:779383-779932 - 9 6.78e-08 CCTTGGAAGG GTGGGATGATAACCACTACACTAACCGCCC GGGGTTAA chrII:350593-351142 - 10 6.78e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAAAACC CTTTTATTG chrVII:205299-205815 - 14 8.21e-08 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXIV:631698-632145 + 17 1.86e-07 CGCACCCTAA GCGAGAATCATACCTCTAGACCACACGCCC GGTAGAAGTT chrXIV:6617-6998 + 14 2.85e-07 CCTCCCCACT CGTTACCCTGCCCCACTCAACCATACCACT CCCAACCACC chrXII:426890-427466 - 4 2.85e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA TAA chrX:540701-542358 - 29 2.85e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA TTTTCTTTCT chrX:374171-374833 + 14 2.85e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrX:355177-355744 - 46 2.85e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrVII:531269-531988 - 32 2.85e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGTAACTCGA chrIV:568652-569337 - 20 2.85e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrIII:316220-316594 - 57 2.85e-07 CCTCCCCACT CGTTACCCTGCCCCACTCAACCATACCACT CCCAACCACC chrXV:663437-664247 + 64 3.64e-07 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTATTT chrXI:307900-308467 + 55 3.64e-07 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrXI:302691-303224 - 11 3.95e-07 TTAATTGGAG TCGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGGAAT chrVII:878554-879055 + 32 3.95e-07 TTAATTGGAG TCGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGAAAT chrVII:287158-287730 + 32 3.95e-07 TTAATTGGAG TCGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGAAAT chrIV:1256798-1257306 + 48 6.84e-07 GCTTGGGAAG CATGAATTCTAACCACTGAACCACTTTCGC TAAGAAGATC chrX:354012-354482 - 47 2.77e-06 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TGATAAATGA chrVI:167192-167710 - 36 2.77e-06 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TCATTTTTGT chrXIII:67554-68049 - 35 2.96e-06 GTACACCGAA CGATCGTGGTGCTCCCTCAGCCACGGGCGT GCTTGGACGC chrXV:216278-216711 + 19 3.36e-06 ATCCGAGCAC CCGCGCCTTCCTCAACCCAGGCACCGCCCC CAGGTAACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSVCYYWWMCCACTVVGCCAHVVVVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:856713-857163 2e-11 13_[-2]_57 chrXII:656818-657214 2e-11 10_[+2]_60 chrXI:219700-220140 2e-11 24_[-2]_46 chrXIV:602091-602569 2.4e-11 31_[-2]_39 chrXII:734591-735018 2.4e-11 47_[-2]_23 chrIX:183288-183779 2.4e-11 [+2]_70 chrIV:1150718-1151168 4.6e-10 18_[+2]_52 chrXIII:258944-259446 5.4e-10 64_[+2]_6 chrXII:592341-592820 5.4e-10 59_[+2]_11 chrXII:167743-168264 5.4e-10 42_[+2]_28 chrX:617689-618163 5.4e-10 42_[-2]_28 chrIV:1305369-1305873 5.4e-10 58_[-2]_12 chrIV:437546-438050 5.4e-10 23_[-2]_47 chrXII:962810-963303 7.2e-10 19_[+2]_51 chrXI:83969-84462 7.2e-10 42_[-2]_28 chrX:424228-424722 7.2e-10 60_[+2]_10 chrXV:353894-354318 1.6e-09 27_[+2]_43 chrXIV:560542-560923 1.6e-09 53_[+2]_17 chrIX:174566-175525 1.6e-09 35_[-2]_35 chrXV:464274-464719 2.7e-09 3_[-2]_67 chrXIV:546535-547676 2.7e-09 38_[-2]_32 chrXII:92258-92877 2.7e-09 30_[-2]_40 chrI:138965-139373 2.7e-09 32_[-2]_38 chrXIV:374666-375142 6.5e-09 14_[-2]_56 chrVII:1004013-1004436 6.5e-09 41_[-2]_29 chrVII:661523-661995 6.5e-09 39_[-2]_31 chrVII:115313-115729 7.3e-09 16_[-2]_54 chrXVI:338603-339161 8.2e-09 57_[+2]_13 chrX:517639-518098 8.2e-09 36_[+2]_34 chrV:99901-100344 8.2e-09 60_[-2]_10 chrIII:149716-150208 8.2e-09 7_[-2]_63 chrVIII:358257-358797 9.2e-09 62_[+2]_8 chrVIII:237671-238146 9.2e-09 51_[+2]_19 chrXIII:808025-808559 1.3e-08 45_[+2]_25 chrV:249776-250760 1.3e-08 67_[-2]_3 chrIV:802556-803033 1.3e-08 28_[+2]_42 chrIV:520720-521189 1.3e-08 67_[-2]_3 chrIII:168095-168571 1.3e-08 59_[+2]_11 chrXVI:581816-582361 2e-08 23_[-2]_47 chrXV:228083-228648 2e-08 15_[-2]_55 chrXI:74328-74879 2e-08 70_[-2] chrV:435550-436031 2e-08 54_[+2]_16 chrIV:1201514-1202073 2e-08 6_[-2]_64 chrIII:127474-127916 2e-08 70_[-2] chrXV:226404-226909 2.2e-08 45_[+2]_25 chrX:396584-397020 2.2e-08 14_[+2]_56 chrXVI:775630-776045 2.5e-08 19_[+2]_51 chrXVI:435665-436198 2.5e-08 53_[+2]_17 chrII:642835-643262 2.5e-08 50_[+2]_20 chrX:233687-234209 3.1e-08 40_[-2]_30 chrV:492192-492574 3.1e-08 61_[+2]_9 chrX:422690-423264 4.1e-08 9_[-2]_61 chrX:390804-391339 4.1e-08 64_[+2]_6 chrXIII:747667-748168 6.8e-08 66_[+2]_4 chrXIII:131596-132111 6.8e-08 63_[+2]_7 chrVII:779383-779932 6.8e-08 8_[-2]_62 chrII:350593-351142 6.8e-08 9_[-2]_61 chrVII:205299-205815 8.2e-08 13_[-2]_57 chrXIV:631698-632145 1.9e-07 16_[+2]_54 chrXIV:6617-6998 2.8e-07 13_[+2]_57 chrXII:426890-427466 2.8e-07 3_[-2]_67 chrX:540701-542358 2.8e-07 28_[-2]_42 chrX:374171-374833 2.8e-07 13_[+2]_57 chrX:355177-355744 2.8e-07 45_[-2]_25 chrVII:531269-531988 2.8e-07 31_[-2]_39 chrIV:568652-569337 2.8e-07 19_[-2]_51 chrIII:316220-316594 2.8e-07 56_[-2]_14 chrXV:663437-664247 3.6e-07 63_[+2]_7 chrXI:307900-308467 3.6e-07 54_[+2]_16 chrXI:302691-303224 4e-07 10_[-2]_60 chrVII:878554-879055 4e-07 31_[+2]_39 chrVII:287158-287730 4e-07 31_[+2]_39 chrIV:1256798-1257306 6.8e-07 47_[+2]_23 chrX:354012-354482 2.8e-06 46_[-2]_24 chrVI:167192-167710 2.8e-06 35_[-2]_35 chrXIII:67554-68049 3e-06 34_[-2]_36 chrXV:216278-216711 3.4e-06 18_[+2]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSVCYYWWMCCACTVVGCCAHVVVVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSNNSVCYYWWMCCACTVVGCCAHVVVVSC width=30 seqs=77 chrXVI:856713-857163 ( 14) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXII:656818-657214 ( 11) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXI:219700-220140 ( 25) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXIV:602091-602569 ( 32) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:734591-735018 ( 48) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrIX:183288-183779 ( 1) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrIV:1150718-1151168 ( 19) GCATCGCCTTAACCACTCGGCCACTGGGAC 1 chrXIII:258944-259446 ( 65) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:592341-592820 ( 60) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrXII:167743-168264 ( 43) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrX:617689-618163 ( 43) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrIV:1305369-1305873 ( 59) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrIV:437546-438050 ( 24) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:962810-963303 ( 20) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXI:83969-84462 ( 43) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrX:424228-424722 ( 61) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXV:353894-354318 ( 28) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXIV:560542-560923 ( 54) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIX:174566-175525 ( 36) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXV:464274-464719 ( 4) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXIV:546535-547676 ( 39) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXII:92258-92877 ( 31) GCGAGAATCATACCACTAGACCACACGCCC 1 chrI:138965-139373 ( 33) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXIV:374666-375142 ( 15) CTGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrVII:1004013-1004436 ( 42) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:661523-661995 ( 40) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:115313-115729 ( 17) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrXVI:338603-339161 ( 58) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrX:517639-518098 ( 37) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrV:99901-100344 ( 61) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrIII:149716-150208 ( 8) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrVIII:358257-358797 ( 63) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:237671-238146 ( 52) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrXIII:808025-808559 ( 46) CGAAAGTGATAACCACTACACTATAGGACC 1 chrV:249776-250760 ( 68) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIV:802556-803033 ( 29) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIV:520720-521189 ( 68) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIII:168095-168571 ( 60) CGAAAGTGATAACCACTACACTATAGGACC 1 chrXVI:581816-582361 ( 24) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrXV:228083-228648 ( 16) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXI:74328-74879 ( 71) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrV:435550-436031 ( 55) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1201514-1202073 ( 7) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIII:127474-127916 ( 71) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXV:226404-226909 ( 46) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrX:396584-397020 ( 15) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXVI:775630-776045 ( 20) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrXVI:435665-436198 ( 54) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrII:642835-643262 ( 51) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrX:233687-234209 ( 41) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrV:492192-492574 ( 62) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrX:422690-423264 ( 10) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrX:390804-391339 ( 65) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrXIII:747667-748168 ( 67) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXIII:131596-132111 ( 64) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrVII:779383-779932 ( 9) GTGGGATGATAACCACTACACTAACCGCCC 1 chrII:350593-351142 ( 10) CGAAAGTGATAACCACTACACTATAAAACC 1 chrVII:205299-205815 ( 14) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXIV:631698-632145 ( 17) GCGAGAATCATACCTCTAGACCACACGCCC 1 chrXIV:6617-6998 ( 14) CGTTACCCTGCCCCACTCAACCATACCACT 1 chrXII:426890-427466 ( 4) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:540701-542358 ( 29) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:374171-374833 ( 14) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:355177-355744 ( 46) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrVII:531269-531988 ( 32) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrIV:568652-569337 ( 20) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrIII:316220-316594 ( 57) CGTTACCCTGCCCCACTCAACCATACCACT 1 chrXV:663437-664247 ( 64) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:307900-308467 ( 55) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:302691-303224 ( 11) TCGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrVII:878554-879055 ( 32) TCGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrVII:287158-287730 ( 32) TCGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrIV:1256798-1257306 ( 48) CATGAATTCTAACCACTGAACCACTTTCGC 1 chrX:354012-354482 ( 47) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:167192-167710 ( 36) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrXIII:67554-68049 ( 35) CGATCGTGGTGCTCCCTCAGCCACGGGCGT 1 chrXV:216278-216711 ( 19) CCGCGCCTTCCTCAACCCAGGCACCGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSVCYYWWMCCACTVVGCCAHVVVVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42316 bayes= 8.4847 E= 7.0e-180 -299 148 12 -48 -199 58 129 -87 -18 21 70 -66 1 12 29 -32 -57 121 87 -1291 -57 87 107 -299 -176 141 -7 -48 -357 82 -7 56 -140 70 -29 43 -18 -18 -288 79 56 -129 -18 -5 82 93 -288 -225 -1291 237 -1291 -457 -57 179 -88 -357 164 -388 -388 -457 -1291 205 -1291 -57 -1291 -388 -1291 168 29 3 76 -157 1 58 107 -1291 7 -1291 182 -1291 -1291 237 -388 -1291 -1291 187 -1291 -5 170 -1291 -1291 -1291 -5 107 -1291 -5 18 44 70 -199 -40 58 87 -125 -25 58 93 -176 1 37 93 -199 -225 133 98 -199 -140 200 -288 -176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSVCYYWWMCCACTVVGCCAHVVVVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 77 E= 7.0e-180 0.038961 0.532468 0.207792 0.220779 0.077922 0.285714 0.467532 0.168831 0.272727 0.220779 0.311688 0.194805 0.311688 0.207792 0.233766 0.246753 0.207792 0.441558 0.350649 0.000000 0.207792 0.350649 0.402597 0.038961 0.090909 0.506494 0.181818 0.220779 0.025974 0.337662 0.181818 0.454545 0.116883 0.311688 0.155844 0.415584 0.272727 0.168831 0.025974 0.532468 0.454545 0.077922 0.168831 0.298701 0.545455 0.363636 0.025974 0.064935 0.000000 0.987013 0.000000 0.012987 0.207792 0.662338 0.103896 0.025974 0.961039 0.012987 0.012987 0.012987 0.000000 0.792208 0.000000 0.207792 0.000000 0.012987 0.000000 0.987013 0.376623 0.194805 0.324675 0.103896 0.311688 0.285714 0.402597 0.000000 0.324675 0.000000 0.675325 0.000000 0.000000 0.987013 0.012987 0.000000 0.000000 0.701299 0.000000 0.298701 1.000000 0.000000 0.000000 0.000000 0.298701 0.402597 0.000000 0.298701 0.350649 0.259740 0.311688 0.077922 0.233766 0.285714 0.350649 0.129870 0.259740 0.285714 0.363636 0.090909 0.311688 0.246753 0.363636 0.077922 0.064935 0.480519 0.376623 0.077922 0.116883 0.766234 0.025974 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSVCYYWWMCCACTVVGCCAHVVVVSC MEME-2 regular expression -------------------------------------------------------------------------------- [CTG][GC][GAC][ATGC][CGA][GCA][CT][TC][TC][TA][AT][AC]C[CA]A[CT]T[AG][GAC][GA]C[CT]A[CAT][AGC][GCA][GCA][GAC][CG]C -------------------------------------------------------------------------------- Time 666.45 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACCCRTACAYCACAYHY MEME-3 width = 19 sites = 57 llr = 693 E-value = 8.3e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACCCRTACAYCACAYHY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5182::615:911517222 pos.-specific C 1816aa:32a168161545 probability G 3:1:::4:2::::221:11 matrix T 1:12:::6:::31221323 bits 2.4 * 2.1 ** * 1.9 ** * 1.7 * ** * Relative 1.4 * ** ** Entropy 1.2 * ** ** * (17.5 bits) 1.0 * **** ** * 0.7 ******* **** 0.5 ************ *** 0.2 ******************* 0.0 ------------------- Multilevel ACACCCATACACCACACCC consensus G GCG T T TAT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCCRTACAYCACAYHY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrXIII:5455-5662 + 35 3.95e-12 ATATACACCC ACACCCACACACCACACCC ACACCCACAC chrXI:666623-666797 - 28 3.95e-12 CACACACCAC ACACCCACACACCACACCC ACACACCCAC chrXI:3-187 + 3 3.95e-12 CC ACACCCACACACCACACCC ACTACTCTAA chrVIII:562335-562594 - 46 3.95e-12 ACACACACCC ACACCCACACACCACACCC ACACTTTTCA chrIV:5-322 + 5 3.95e-12 ACCC ACACCCACACACCACACCC ACACCCACAC chrXV:639150-639499 - 37 2.03e-10 GACTACTTTT ACACCCGTACACCACACAT ACAACCGTAC chrVII:371198-371581 + 16 5.20e-10 AAAAATACCG GCACCCATGCACCTCACAC CGCCGCACGC chrXVI:866457-866740 - 34 2.43e-09 GAACGGAAAT ACACCCATACACCAAACCT CTGTGAATTT chrX:545414-545762 - 13 2.43e-09 GAAAAGACAG CCACCCATGCACCGCACTC GCACGTGGCA chrVII:291706-291970 + 8 7.98e-09 TGTTAAA GAACCCACACACCACACGC GCGAGAACTG chrXIII:302874-303142 - 1 2.02e-08 GCGCATATGG GCGCCCACACCCCACACCC chrXV:968128-968423 - 38 2.35e-08 CGAGCAGCGC ACGCCCACGCACCCCACGC TTTTGAGATC chrIII:72-623 + 15 3.14e-08 CCACACACCC ACACCCACACACACCACAC CCACACCACA chrVII:856731-856945 - 70 3.62e-08 TTGAGGGTAC CCGCCCATACACCGCACCA ATGGAACTAG chrXVI:280020-280246 + 31 1.06e-07 GGAGAAGTCC GCATCCGTGCACCTCACAA TTCCGAAAGA chrXII:903341-903666 + 69 2.22e-07 TAGAAGCATT GGACCCATGCACCACATGC ATTAGGACCC chrXI:382183-382464 + 32 2.22e-07 TGCTGCTGTT GCATCCGGACATCACACCC AACACAAAAC chrIV:411228-411665 + 39 3.54e-07 AACAAATCAA ACACCCACACCCCGGGCAC CCAAAGTCCC chrXI:83969-84462 - 79 6.15e-07 CGG ACAACCGTCCAACAGATCT TAAGTCTGCC chrX:424228-424722 + 36 6.15e-07 ACTCGCGCGG ACAACCGTCCAACAGATCT TAAGTCTGCC chrIV:519650-519967 - 21 6.15e-07 ACTCGCGCGG ACAACCGTCCAACAGATCT TAAGTCTGCC chrII:347392-347964 - 11 6.15e-07 ACTCGCGCGG ACAACCGTCCAACAGATCT TAAGTCTGCC chrII:181320-181689 + 41 7.61e-07 CCTTTACAAA GCACCCATACATTACATTG AATACATTAC chrXIII:296729-298922 + 36 9.36e-07 CGGGCCTAGA AAACCCGCGCAACTGATCC ATTGTAAGTT chrXI:67798-68041 + 44 9.36e-07 ACCCGTGCTG AAATCCGTGCACCGCATCA AATTTTCTCG chrXVI:699844-700681 + 48 1.04e-06 CCACTTCAAA ACACCCAAGCACAGCATAC TAAATTTCCC chrXV:168084-168382 + 24 1.27e-06 GTATTCAAAG CCGCCCACACATCACATTG AGAACGAGGT chrXV:1025716-1026052 + 42 1.40e-06 CATATGCTGA ACACCCATTCATCACGTGT AATTGGACAT chrI:81904-82334 - 35 1.87e-06 AACTGTTGGT ACATCCGTGCACCTCCGCT AGATGAGGTG chrXIV:6617-6998 + 73 2.06e-06 TCTACTTACT ACTACCATCCACCGCCCAT CATAACCGT chrIII:316220-316594 - 9 2.06e-06 TCTACTTACT ACTACCATCCACCGCCCAT CATAACCG chrXVI:188595-188933 + 76 2.98e-06 GTGACTTTTA AAACCCATGCATCGGTTAC TATGGT chrXVI:378634-379011 - 37 3.27e-06 AGTTCTCATT GAACCCATACATTTCAACT ATTTTTACAT chrXII:1028180-1028625 + 46 3.57e-06 AGACAAAATA TCACCCATGCACCAAAATG TATGGGTCAT chrVIII:125896-126326 + 41 3.57e-06 AGACGTTAAT GCATCCGTACACCTACATC TTTACATTTT chrI:181122-181504 - 62 3.57e-06 CAGAGTATAT GCATCCACGAAACACACCC TCATTGGTAT chrXIII:549880-553312 + 73 3.90e-06 GTACATATTG GCACCCATACATTATAAAA TCATCTCGG chrXV:79711-80161 - 56 4.64e-06 CTCCATGTAA ACACCCGTACATATTAAAT AAGTGACCCA chrXII:645869-646060 + 32 4.64e-06 CGTTCCACCC ACACCCATTCACCCGTCGG GCGAAATCCA chrV:53483-54036 - 20 4.64e-06 ACCCTGTTTA ACATCCGAACACCAAATAT GTGTGGGTGT chrXII:932069-932534 - 10 5.06e-06 ATACATCCGT ACATCCGTACATCTGTACA TCTGTACAC chrXII:920997-923751 + 21 5.51e-06 TTTGAAATTG ACACCCGTACATATTCCAA TTCTCGTCTT chrXV:901444-901673 - 26 6.51e-06 TCGGGACTGT TCACCCGTACATTTTACGT TTCCGACGGC chrVII:1000363-1000620 + 17 6.51e-06 CACTAGGATA GCACCCAAACACCTGCATA TTTGGACGAC chrX:745060-745748 - 56 7.66e-06 CTACTATTAC CCTACCATCCACCATGTCC TACTCACTGT chrVIII:119587-121714 + 31 7.66e-06 ATTCCTTCTT ACCACCATCCAAAACACGC ATTTGTTCTT chrII:165059-165446 + 55 7.66e-06 ATTACGAATC TAACCCATACACCGCGTTA GAGCACTCGC chrXVI:134284-135834 + 36 8.31e-06 AGTAAGGAAA CCACCCGTCCAACCTTTTC TGAAAAGGTT chrIV:321617-321975 + 53 8.31e-06 TCATACCTTT ACCTCCGTACACCAATCTT TATTTTTACC chrIX:254201-254580 - 12 9.00e-06 GCGAGCTTCC GCACCCACACATTCTAATT GCCGCGCCTT chrXIV:493699-495701 - 57 9.74e-06 ATGAATTTGC AATACCGTGCATCACGCCT AAAAAGTGGC chrIV:358026-358493 - 34 1.14e-05 GGTGTACACA CCACCCATACATTATCTGA CAAGGAAACA chrIV:216538-218074 + 58 1.14e-05 GCCCTGCTTT GAACCCGTACATTTTATTC TATAATATTG chrXV:216278-216711 + 80 1.54e-05 CTAATCCTGA GCCATCACCCACCCCACCC GT chrX:391824-392145 + 47 1.66e-05 GGCAACGAGG TCGCACACGCCCCACACCC AGACCTCCCT chrXII:370570-370928 - 12 3.58e-05 TAGCTTGCTG CCACCCTCACCTCACTAAC GCTGCGGTGT chrXII:713136-713620 - 38 5.98e-05 GCAGACTATC ACATCCGTACATATGTATA AAAAAATCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCCRTACAYCACAYHY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:5455-5662 4e-12 34_[+3]_47 chrXI:666623-666797 4e-12 27_[-3]_54 chrXI:3-187 4e-12 2_[+3]_79 chrVIII:562335-562594 4e-12 45_[-3]_36 chrIV:5-322 4e-12 4_[+3]_77 chrXV:639150-639499 2e-10 36_[-3]_45 chrVII:371198-371581 5.2e-10 15_[+3]_66 chrXVI:866457-866740 2.4e-09 33_[-3]_48 chrX:545414-545762 2.4e-09 12_[-3]_69 chrVII:291706-291970 8e-09 7_[+3]_74 chrXIII:302874-303142 2e-08 [-3]_81 chrXV:968128-968423 2.3e-08 37_[-3]_44 chrIII:72-623 3.1e-08 14_[+3]_67 chrVII:856731-856945 3.6e-08 69_[-3]_12 chrXVI:280020-280246 1.1e-07 30_[+3]_51 chrXII:903341-903666 2.2e-07 68_[+3]_13 chrXI:382183-382464 2.2e-07 31_[+3]_50 chrIV:411228-411665 3.5e-07 38_[+3]_43 chrXI:83969-84462 6.2e-07 78_[-3]_3 chrX:424228-424722 6.2e-07 35_[+3]_46 chrIV:519650-519967 6.2e-07 20_[-3]_61 chrII:347392-347964 6.2e-07 10_[-3]_71 chrII:181320-181689 7.6e-07 40_[+3]_41 chrXIII:296729-298922 9.4e-07 35_[+3]_46 chrXI:67798-68041 9.4e-07 43_[+3]_38 chrXVI:699844-700681 1e-06 47_[+3]_34 chrXV:168084-168382 1.3e-06 23_[+3]_58 chrXV:1025716-1026052 1.4e-06 41_[+3]_40 chrI:81904-82334 1.9e-06 34_[-3]_47 chrXIV:6617-6998 2.1e-06 72_[+3]_9 chrIII:316220-316594 2.1e-06 8_[-3]_73 chrXVI:188595-188933 3e-06 75_[+3]_6 chrXVI:378634-379011 3.3e-06 36_[-3]_45 chrXII:1028180-1028625 3.6e-06 45_[+3]_36 chrVIII:125896-126326 3.6e-06 40_[+3]_41 chrI:181122-181504 3.6e-06 61_[-3]_20 chrXIII:549880-553312 3.9e-06 72_[+3]_9 chrXV:79711-80161 4.6e-06 55_[-3]_26 chrXII:645869-646060 4.6e-06 31_[+3]_50 chrV:53483-54036 4.6e-06 19_[-3]_62 chrXII:932069-932534 5.1e-06 9_[-3]_72 chrXII:920997-923751 5.5e-06 20_[+3]_61 chrXV:901444-901673 6.5e-06 25_[-3]_56 chrVII:1000363-1000620 6.5e-06 16_[+3]_65 chrX:745060-745748 7.7e-06 55_[-3]_26 chrVIII:119587-121714 7.7e-06 30_[+3]_51 chrII:165059-165446 7.7e-06 54_[+3]_27 chrXVI:134284-135834 8.3e-06 35_[+3]_46 chrIV:321617-321975 8.3e-06 52_[+3]_29 chrIX:254201-254580 9e-06 11_[-3]_70 chrXIV:493699-495701 9.7e-06 56_[-3]_25 chrIV:358026-358493 1.1e-05 33_[-3]_48 chrIV:216538-218074 1.1e-05 57_[+3]_24 chrXV:216278-216711 1.5e-05 79_[+3]_2 chrX:391824-392145 1.7e-05 46_[+3]_35 chrXII:370570-370928 3.6e-05 11_[-3]_70 chrXII:713136-713620 6e-05 37_[-3]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCCRTACAYCACAYHY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACCCRTACAYCACAYHY width=19 seqs=57 chrXIII:5455-5662 ( 35) ACACCCACACACCACACCC 1 chrXI:666623-666797 ( 28) ACACCCACACACCACACCC 1 chrXI:3-187 ( 3) ACACCCACACACCACACCC 1 chrVIII:562335-562594 ( 46) ACACCCACACACCACACCC 1 chrIV:5-322 ( 5) ACACCCACACACCACACCC 1 chrXV:639150-639499 ( 37) ACACCCGTACACCACACAT 1 chrVII:371198-371581 ( 16) GCACCCATGCACCTCACAC 1 chrXVI:866457-866740 ( 34) ACACCCATACACCAAACCT 1 chrX:545414-545762 ( 13) CCACCCATGCACCGCACTC 1 chrVII:291706-291970 ( 8) GAACCCACACACCACACGC 1 chrXIII:302874-303142 ( 1) GCGCCCACACCCCACACCC 1 chrXV:968128-968423 ( 38) ACGCCCACGCACCCCACGC 1 chrIII:72-623 ( 15) ACACCCACACACACCACAC 1 chrVII:856731-856945 ( 70) CCGCCCATACACCGCACCA 1 chrXVI:280020-280246 ( 31) GCATCCGTGCACCTCACAA 1 chrXII:903341-903666 ( 69) GGACCCATGCACCACATGC 1 chrXI:382183-382464 ( 32) GCATCCGGACATCACACCC 1 chrIV:411228-411665 ( 39) ACACCCACACCCCGGGCAC 1 chrXI:83969-84462 ( 79) ACAACCGTCCAACAGATCT 1 chrX:424228-424722 ( 36) ACAACCGTCCAACAGATCT 1 chrIV:519650-519967 ( 21) ACAACCGTCCAACAGATCT 1 chrII:347392-347964 ( 11) ACAACCGTCCAACAGATCT 1 chrII:181320-181689 ( 41) GCACCCATACATTACATTG 1 chrXIII:296729-298922 ( 36) AAACCCGCGCAACTGATCC 1 chrXI:67798-68041 ( 44) AAATCCGTGCACCGCATCA 1 chrXVI:699844-700681 ( 48) ACACCCAAGCACAGCATAC 1 chrXV:168084-168382 ( 24) CCGCCCACACATCACATTG 1 chrXV:1025716-1026052 ( 42) ACACCCATTCATCACGTGT 1 chrI:81904-82334 ( 35) ACATCCGTGCACCTCCGCT 1 chrXIV:6617-6998 ( 73) ACTACCATCCACCGCCCAT 1 chrIII:316220-316594 ( 9) ACTACCATCCACCGCCCAT 1 chrXVI:188595-188933 ( 76) AAACCCATGCATCGGTTAC 1 chrXVI:378634-379011 ( 37) GAACCCATACATTTCAACT 1 chrXII:1028180-1028625 ( 46) TCACCCATGCACCAAAATG 1 chrVIII:125896-126326 ( 41) GCATCCGTACACCTACATC 1 chrI:181122-181504 ( 62) GCATCCACGAAACACACCC 1 chrXIII:549880-553312 ( 73) GCACCCATACATTATAAAA 1 chrXV:79711-80161 ( 56) ACACCCGTACATATTAAAT 1 chrXII:645869-646060 ( 32) ACACCCATTCACCCGTCGG 1 chrV:53483-54036 ( 20) ACATCCGAACACCAAATAT 1 chrXII:932069-932534 ( 10) ACATCCGTACATCTGTACA 1 chrXII:920997-923751 ( 21) ACACCCGTACATATTCCAA 1 chrXV:901444-901673 ( 26) TCACCCGTACATTTTACGT 1 chrVII:1000363-1000620 ( 17) GCACCCAAACACCTGCATA 1 chrX:745060-745748 ( 56) CCTACCATCCACCATGTCC 1 chrVIII:119587-121714 ( 31) ACCACCATCCAAAACACGC 1 chrII:165059-165446 ( 55) TAACCCATACACCGCGTTA 1 chrXVI:134284-135834 ( 36) CCACCCGTCCAACCTTTTC 1 chrIV:321617-321975 ( 53) ACCTCCGTACACCAATCTT 1 chrIX:254201-254580 ( 12) GCACCCACACATTCTAATT 1 chrXIV:493699-495701 ( 57) AATACCGTGCATCACGCCT 1 chrIV:358026-358493 ( 34) CCACCCATACATTATCTGA 1 chrIV:216538-218074 ( 58) GAACCCGTACATTTTATTC 1 chrXV:216278-216711 ( 80) GCCATCACCCACCCCACCC 1 chrX:391824-392145 ( 47) TCGCACACGCCCCACACCC 1 chrXII:370570-370928 ( 12) CCACCCTCACCTCACTAAC 1 chrXII:713136-713620 ( 38) ACATCCGTACATATGTATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCCRTACAYCACAYHY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 48872 bayes= 9.60678 E= 8.3e-046 82 -64 46 -214 -114 214 -344 -1248 135 -186 -112 -214 -82 176 -1248 -82 -413 234 -1248 -413 -1248 239 -1248 -1248 99 -1248 95 -413 -255 64 -344 103 82 -12 36 -314 -413 236 -1248 -1248 159 -145 -1248 -1248 -114 155 -1248 -5 -155 201 -1248 -133 72 -86 -28 -44 -182 155 1 -97 111 -64 -112 -133 -82 136 -344 3 -33 108 -45 -55 -82 125 -145 -5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCCRTACAYCACAYHY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 57 E= 8.3e-046 0.543860 0.122807 0.263158 0.070175 0.140351 0.842105 0.017544 0.000000 0.789474 0.052632 0.087719 0.070175 0.175439 0.649123 0.000000 0.175439 0.017544 0.964912 0.000000 0.017544 0.000000 1.000000 0.000000 0.000000 0.614035 0.000000 0.368421 0.017544 0.052632 0.298246 0.017544 0.631579 0.543860 0.175439 0.245614 0.035088 0.017544 0.982456 0.000000 0.000000 0.929825 0.070175 0.000000 0.000000 0.140351 0.561404 0.000000 0.298246 0.105263 0.771930 0.000000 0.122807 0.508772 0.105263 0.157895 0.228070 0.087719 0.561404 0.192982 0.157895 0.666667 0.122807 0.087719 0.122807 0.175439 0.491228 0.017544 0.315789 0.245614 0.403509 0.140351 0.210526 0.175439 0.456140 0.070175 0.298246 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCCRTACAYCACAYHY MEME-3 regular expression -------------------------------------------------------------------------------- [AG]CACCC[AG][TC][AG]CA[CT]C[AT]CA[CT][CAT][CT] -------------------------------------------------------------------------------- Time 971.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71770-73676 1.10e-01 100 chrI:81904-82334 1.11e-03 34_[-3(1.87e-06)]_47 chrI:138965-139373 5.94e-06 32_[-2(2.75e-09)]_38 chrI:142152-143715 7.39e-01 100 chrI:166169-166611 9.65e-01 100 chrI:169410-170555 5.89e-01 100 chrI:181122-181504 1.45e-02 61_[-3(3.57e-06)]_20 chrI:182231-183193 2.41e-02 100 chrII:9444-9986 7.14e-01 100 chrII:36231-36808 7.21e-01 100 chrII:44641-45390 2.21e-01 100 chrII:59832-61798 9.81e-01 100 chrII:87893-88575 9.89e-01 100 chrII:88937-90398 7.48e-02 100 chrII:165059-165446 1.43e-03 54_[+3(7.66e-06)]_27 chrII:167752-169654 4.82e-01 100 chrII:181320-181689 5.44e-03 40_[+3(7.61e-07)]_41 chrII:181915-182068 2.02e-01 100 chrII:197247-197859 7.32e-07 34_[+1(1.51e-10)]_45 chrII:226972-227365 8.73e-02 8_[+1(5.64e-05)]_71 chrII:235003-235889 2.47e-01 100 chrII:236597-237316 6.79e-01 100 chrII:266179-266708 9.87e-05 27_[+1(2.33e-08)]_52 chrII:300070-300246 1.27e-01 100 chrII:326449-327111 9.61e-06 70_[-1(1.51e-09)]_9 chrII:332296-333092 6.55e-01 100 chrII:347392-347964 7.75e-07 10_[-3(6.15e-07)]_4_[-1(4.07e-07)]_\ 46 chrII:350593-351142 4.90e-10 9_[-2(6.78e-08)]_12_[+1(3.54e-09)]_\ 28 chrII:392960-394969 7.38e-01 100 chrII:405666-406361 1.24e-05 38_[+1(1.17e-08)]_41 chrII:413805-415278 2.47e-01 100 chrII:415492-416064 1.93e-01 100 chrII:476808-477775 7.45e-01 100 chrII:478951-479467 9.98e-01 100 chrII:556274-558452 5.41e-01 100 chrII:592271-593403 9.29e-01 100 chrII:604051-607136 7.03e-01 100 chrII:642835-643262 4.35e-08 17_[-1(3.82e-07)]_12_[+2(2.48e-08)]_\ 20 chrII:644935-645443 8.96e-07 69_[+1(2.09e-10)]_10 chrII:680356-682451 1.62e-01 100 chrIII:72-623 6.25e-06 14_[+3(3.14e-08)]_13_[+3(2.50e-07)]_\ 35 chrIII:834-1064 8.18e-01 100 chrIII:13986-15054 1.31e-01 100 chrIII:30539-30906 9.69e-01 100 chrIII:82369-82667 8.96e-07 2_[-1(2.09e-10)]_77 chrIII:90847-91140 9.65e-01 100 chrIII:107188-107834 9.60e-01 100 chrIII:123325-123827 6.13e-10 59_[-1(2.85e-12)]_20 chrIII:127474-127916 2.26e-04 70_[-2(2.00e-08)] chrIII:137815-138978 2.82e-01 100 chrIII:141994-142976 2.95e-01 100 chrIII:149716-150208 1.65e-06 7_[-2(8.20e-09)]_63 chrIII:150958-151530 8.16e-01 100 chrIII:162064-163901 9.46e-01 100 chrIII:168095-168571 1.05e-10 26_[-1(3.54e-09)]_12_[+2(1.29e-08)]_\ 11 chrIII:177074-178805 7.47e-01 100 chrIII:227758-228543 4.34e-01 100 chrIII:295291-295913 5.83e-01 100 chrIII:308674-309497 9.32e-01 100 chrIII:315594-316047 7.65e-01 100 chrIII:316220-316594 2.25e-06 8_[-3(2.06e-06)]_6_[-3(1.43e-05)]_4_\ [-2(2.85e-07)]_14 chrIV:5-322 2.77e-09 4_[+3(3.95e-12)]_[+3(5.32e-11)]_58 chrIV:45209-46177 2.37e-01 100 chrIV:83341-83975 9.59e-01 100 chrIV:117136-118226 4.75e-01 100 chrIV:118418-118858 9.98e-01 100 chrIV:129694-131017 9.86e-01 100 chrIV:216538-218074 5.21e-03 57_[+3(1.14e-05)]_24 chrIV:221316-222366 8.39e-01 100 chrIV:229444-230749 7.96e-01 100 chrIV:305474-310221 9.20e-01 100 chrIV:321617-321975 2.01e-02 52_[+3(8.31e-06)]_29 chrIV:322167-323588 5.36e-01 100 chrIV:340145-341833 3.45e-01 100 chrIV:355126-356982 3.17e-01 100 chrIV:358026-358493 4.19e-02 33_[-3(1.14e-05)]_48 chrIV:359163-359835 1.06e-01 100 chrIV:410147-410778 6.54e-07 9_[+1(6.78e-10)]_70 chrIV:411228-411665 1.38e-04 38_[+3(3.54e-07)]_9_[+3(1.14e-05)]_\ 15 chrIV:433566-433741 2.21e-01 100 chrIV:433959-434916 7.87e-01 100 chrIV:437546-438050 1.33e-07 23_[-2(5.38e-10)]_22_[+1(5.64e-05)]_\ 4 chrIV:465277-465615 9.02e-01 100 chrIV:488441-489155 1.42e-05 57_[-1(1.51e-09)]_22 chrIV:490939-492704 5.68e-01 100 chrIV:519650-519967 7.75e-07 20_[-3(6.15e-07)]_4_[-1(4.07e-07)]_\ 36 chrIV:520720-521189 5.02e-06 67_[-2(1.29e-08)]_3 chrIV:541223-541925 9.91e-01 100 chrIV:555768-556508 1.09e-01 100 chrIV:568652-569337 1.01e-08 19_[-2(2.85e-07)]_12_[+1(1.17e-08)]_\ 18 chrIV:579021-580713 4.09e-02 100 chrIV:600625-602413 9.18e-03 12_[+2(5.00e-05)]_58 chrIV:619696-620200 7.24e-04 79_[-1(1.95e-07)] chrIV:644446-644609 9.13e-01 100 chrIV:644776-645387 8.84e-01 100 chrIV:655358-656300 1.93e-01 100 chrIV:667724-668280 8.17e-07 63_[-1(1.51e-10)]_16 chrIV:757490-758228 3.50e-02 100 chrIV:802556-803033 1.48e-06 28_[+2(1.29e-08)]_42 chrIV:835744-836304 7.17e-01 100 chrIV:884245-884653 8.37e-05 64_[+1(3.36e-08)]_15 chrIV:915349-916280 3.31e-02 41_[-1(5.10e-05)]_38 chrIV:946120-946675 3.61e-04 23_[+1(1.36e-07)]_56 chrIV:980723-981163 8.88e-01 100 chrIV:992720-993246 8.19e-01 100 chrIV:1012860-1013228 5.44e-01 100 chrIV:1013390-1013965 8.23e-01 100 chrIV:1016950-1017526 6.25e-07 27_[-1(2.09e-10)]_52 chrIV:1075262-1075760 4.85e-09 19_[-1(9.17e-11)]_13_[+2(2.31e-05)]_\ 17 chrIV:1095122-1095660 1.01e-05 37_[-1(1.93e-08)]_42 chrIV:1150718-1151168 7.09e-07 18_[+2(4.65e-10)]_52 chrIV:1175741-1176116 8.17e-01 100 chrIV:1201514-1202073 5.80e-12 6_[-2(2.00e-08)]_13_[+1(1.51e-10)]_\ 30 chrIV:1236389-1238528 4.37e-01 100 chrIV:1256798-1257306 5.39e-11 14_[-1(5.88e-10)]_12_[+2(6.84e-07)]_\ 23 chrIV:1300604-1301345 7.35e-01 100 chrIV:1305369-1305873 6.62e-06 58_[-2(5.38e-10)]_12 chrIV:1352051-1353080 6.14e-01 100 chrIV:1354601-1356088 9.89e-01 100 chrIV:1359416-1361120 3.74e-01 100 chrIV:1401181-1403337 1.57e-02 100 chrIV:1449808-1451364 4.62e-01 100 chrIV:1461459-1461850 2.42e-01 100 chrIV:1488876-1489977 1.19e-01 42_[+3(5.98e-05)]_39 chrIX:68169-69579 9.49e-01 100 chrIX:98189-100050 3.26e-01 100 chrIX:174566-175525 3.30e-10 35_[-2(1.63e-09)]_13_[+1(2.33e-08)]_\ 1 chrIX:183288-183779 4.47e-07 [+2(2.41e-11)]_70 chrIX:197364-197897 6.25e-07 53_[+1(2.09e-10)]_26 chrIX:210655-211079 9.03e-01 100 chrIX:248620-249000 2.65e-01 100 chrIX:254201-254580 9.16e-04 11_[-3(9.00e-06)]_31_[-3(5.62e-05)]_\ 20 chrIX:257364-257945 8.13e-01 100 chrIX:299983-300491 1.83e-07 49_[-1(1.51e-10)]_30 chrIX:315803-318478 9.78e-01 100 chrIX:322579-324393 6.23e-02 100 chrIX:325733-326313 3.85e-01 100 chrIX:336059-336632 1.43e-05 62_[-1(1.17e-08)]_17 chrIX:370215-370767 4.17e-06 17_[+1(2.09e-10)]_62 chrIX:391101-392325 6.29e-02 100 chrV:53483-54036 4.03e-03 19_[-3(4.64e-06)]_62 chrV:61029-62166 5.34e-01 100 chrV:67131-69311 3.92e-01 100 chrV:77964-79473 1.69e-01 100 chrV:85092-86993 6.07e-01 100 chrV:99901-100344 5.29e-05 60_[-2(8.20e-09)]_10 chrV:110566-110966 9.73e-01 100 chrV:117407-118320 8.41e-01 100 chrV:130835-131369 5.02e-06 38_[-1(3.54e-09)]_41 chrV:135170-136039 1.64e-01 100 chrV:138439-140002 9.69e-01 100 chrV:140160-140905 7.76e-01 100 chrV:141093-141287 7.28e-01 100 chrV:176898-177468 3.68e-06 7_[+1(2.09e-10)]_72 chrV:207349-208194 6.06e-01 100 chrV:235250-237166 4.80e-01 100 chrV:249776-250760 1.03e-04 67_[-2(1.29e-08)]_3 chrV:270072-270664 5.54e-02 47_[-2(2.00e-05)]_23 chrV:288137-288747 1.71e-01 100 chrV:305766-307409 5.89e-01 100 chrV:311708-312303 2.68e-06 76_[-1(1.51e-10)]_3 chrV:321989-323358 8.64e-01 100 chrV:354691-355378 7.94e-02 100 chrV:362147-363299 5.85e-01 100 chrV:363631-364056 7.07e-01 100 chrV:396131-398191 1.24e-01 100 chrV:423075-425523 8.02e-01 100 chrV:431016-431940 4.23e-01 100 chrV:434376-435149 1.62e-01 100 chrV:435550-436031 5.80e-12 20_[-1(1.51e-10)]_13_[+2(2.00e-08)]_\ 16 chrV:438526-438985 1.83e-05 38_[+1(2.48e-09)]_41 chrV:441781-442754 3.54e-01 100 chrV:442974-443363 2.02e-01 100 chrV:469236-470190 8.31e-02 100 chrV:486394-486856 9.18e-01 100 chrV:487085-487627 8.96e-07 33_[-1(2.09e-10)]_46 chrV:492192-492574 3.44e-08 27_[-1(1.95e-07)]_13_[+2(3.05e-08)]_\ 9 chrV:551014-551569 7.32e-07 52_[-1(1.51e-10)]_27 chrVI:63967-65403 8.74e-01 100 chrVI:82479-84453 4.86e-01 100 chrVI:95468-95906 5.35e-02 13_[-2(7.58e-05)]_57 chrVI:101008-101696 5.41e-01 100 chrVI:136815-137709 3.55e-01 100 chrVI:157842-158249 9.77e-01 100 chrVI:162007-162403 8.45e-01 100 chrVI:167192-167710 1.40e-02 35_[-2(2.77e-06)]_35 chrVI:180672-181278 5.84e-07 57_[-1(1.77e-10)]_22 chrVI:191002-191784 3.21e-01 100 chrVI:210422-211110 7.98e-01 100 chrVI:220063-222104 9.64e-02 100 chrVI:222718-225140 4.57e-01 100 chrVI:226486-226919 5.21e-07 44_[-1(1.51e-10)]_35 chrVII:274-1307 8.86e-01 100 chrVII:20241-20973 6.66e-01 100 chrVII:23954-25406 2.89e-01 100 chrVII:110360-110789 9.13e-01 100 chrVII:115313-115729 6.46e-06 16_[-2(7.29e-09)]_54 chrVII:122050-123008 9.14e-01 100 chrVII:148047-149567 5.13e-01 100 chrVII:185406-185920 4.00e-01 100 chrVII:205299-205815 1.98e-04 13_[-2(8.21e-08)]_57 chrVII:254118-254746 9.55e-01 100 chrVII:255191-255593 4.91e-01 100 chrVII:276998-278725 6.21e-01 100 chrVII:287158-287730 6.96e-04 31_[+2(3.95e-07)]_39 chrVII:291706-291970 7.54e-05 7_[+3(7.98e-09)]_74 chrVII:310380-312248 9.74e-01 100 chrVII:319246-320163 5.07e-01 100 chrVII:328368-329013 7.55e-01 100 chrVII:345821-346650 3.62e-02 100 chrVII:364054-364440 5.13e-01 100 chrVII:364902-366751 4.06e-01 100 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2.14e-05 27_[+2(1.63e-09)]_43 chrXV:407603-408233 4.97e-01 100 chrXV:438439-439030 7.68e-07 24_[+1(3.15e-09)]_55 chrXV:444607-446209 3.51e-01 100 chrXV:464274-464719 1.52e-11 3_[-2(2.75e-09)]_42_[+1(1.94e-09)]_\ 4 chrXV:487429-487767 9.59e-01 100 chrXV:504981-505504 5.70e-01 100 chrXV:505697-507023 4.09e-01 100 chrXV:571707-572160 7.31e-01 100 chrXV:594308-594679 6.56e-01 100 chrXV:639150-639499 1.08e-06 36_[-3(2.03e-10)]_45 chrXV:663437-664247 2.75e-09 28_[-1(2.48e-09)]_14_[+2(3.64e-07)]_\ 7 chrXV:678040-679171 7.01e-01 100 chrXV:710117-710489 9.98e-01 100 chrXV:722971-724699 2.21e-02 60_[+1(3.52e-05)]_19 chrXV:758961-759599 8.51e-01 100 chrXV:779658-780996 6.81e-01 100 chrXV:832229-832847 9.59e-01 100 chrXV:853956-854809 4.86e-01 100 chrXV:866524-868109 5.43e-01 100 chrXV:899754-901251 8.35e-02 100 chrXV:901444-901673 2.71e-02 25_[-3(6.51e-06)]_56 chrXV:925215-925432 8.70e-01 100 chrXV:968128-968423 5.77e-05 37_[-3(2.35e-08)]_44 chrXV:976375-976706 3.59e-01 100 chrXV:978801-979160 5.30e-02 100 chrXV:979738-981305 9.91e-01 100 chrXV:1003913-1004993 9.99e-01 100 chrXV:1025716-1026052 5.28e-03 41_[+3(1.40e-06)]_40 chrXV:1027825-1029548 2.69e-01 100 chrXV:1091123-1091290 3.54e-01 100 chrXVI:55847-56434 7.08e-01 100 chrXVI:75149-76864 6.18e-01 100 chrXVI:108585-114762 1.82e-01 100 chrXVI:134284-135834 1.32e-02 35_[+3(8.31e-06)]_46 chrXVI:172841-174083 3.05e-01 100 chrXVI:188595-188933 1.57e-03 75_[+3(2.98e-06)]_6 chrXVI:209698-210498 7.32e-01 100 chrXVI:215423-216141 6.56e-01 100 chrXVI:280020-280246 5.13e-04 30_[+3(1.06e-07)]_51 chrXVI:280535-283275 2.43e-01 100 chrXVI:302632-304350 2.07e-01 100 chrXVI:310412-311191 6.68e-01 100 chrXVI:338603-339161 1.65e-06 57_[+2(8.20e-09)]_13 chrXVI:340482-340776 1.17e-01 100 chrXVI:378634-379011 1.48e-03 36_[-3(3.27e-06)]_6_[-3(4.96e-05)]_\ 20 chrXVI:404534-407782 9.68e-01 100 chrXVI:435665-436198 1.93e-08 20_[-1(3.82e-07)]_12_[+2(2.48e-08)]_\ 17 chrXVI:519281-520545 1.57e-01 100 chrXVI:559905-560516 3.73e-05 46_[-1(1.93e-08)]_33 chrXVI:572173-572609 1.81e-01 100 chrXVI:581816-582361 5.80e-12 23_[-2(2.00e-08)]_13_[+1(1.51e-10)]_\ 13 chrXVI:592254-592974 1.25e-01 100 chrXVI:622278-622866 3.73e-05 26_[-1(1.93e-08)]_53 chrXVI:642279-643359 3.18e-01 100 chrXVI:689355-689875 3.23e-03 7_[-2(2.54e-05)]_63 chrXVI:692825-695043 5.62e-01 100 chrXVI:699844-700681 2.03e-03 47_[+3(1.04e-06)]_34 chrXVI:701887-702319 6.27e-01 100 chrXVI:718353-719741 8.20e-01 100 chrXVI:730940-731327 9.69e-01 100 chrXVI:731635-732310 3.87e-01 100 chrXVI:744072-744623 1.53e-04 28_[+1(3.59e-07)]_51 chrXVI:768406-769503 9.52e-01 100 chrXVI:775630-776045 2.30e-04 19_[+2(2.48e-08)]_51 chrXVI:794458-796095 9.03e-01 100 chrXVI:810572-811839 2.26e-01 100 chrXVI:819310-820274 3.93e-01 100 chrXVI:821643-822199 8.49e-01 100 chrXVI:856713-857163 3.18e-14 13_[-2(2.00e-11)]_13_[+1(6.78e-10)]_\ 23 chrXVI:860154-860717 4.94e-07 34_[+1(1.77e-10)]_45 chrXVI:866457-866740 1.36e-05 33_[-3(2.43e-09)]_48 chrXVI:879748-880576 9.67e-01 100 chrXVI:941339-942846 1.64e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************