******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--YRR1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71756-73248 1.0000 100 chrI:81914-82368 1.0000 100 chrI:138942-139356 1.0000 100 chrI:142158-143639 1.0000 100 chrI:166169-166592 1.0000 100 chrI:181130-181641 1.0000 100 chrI:182201-183199 1.0000 100 chrII:9454-9970 1.0000 100 chrII:36239-36592 1.0000 100 chrII:44808-45353 1.0000 100 chrII:45567-46827 1.0000 100 chrII:59507-61292 1.0000 100 chrII:87953-88553 1.0000 100 chrII:88960-90102 1.0000 100 chrII:165068-165441 1.0000 100 chrII:167559-169661 1.0000 100 chrII:181333-181705 1.0000 100 chrII:197242-197849 1.0000 100 chrII:217025-217430 1.0000 100 chrII:226964-227372 1.0000 100 chrII:254312-255792 1.0000 100 chrII:266182-266755 1.0000 100 chrII:311222-311886 1.0000 100 chrII:326421-327076 1.0000 100 chrII:332069-332988 1.0000 100 chrII:347408-347956 1.0000 100 chrII:350614-351060 1.0000 100 chrII:393059-394925 1.0000 100 chrII:405685-406230 1.0000 100 chrII:413108-416270 1.0000 100 chrII:476607-477750 1.0000 100 chrII:544030-545997 1.0000 100 chrII:592267-593627 1.0000 100 chrII:604085-607151 1.0000 100 chrII:642865-643258 1.0000 100 chrII:644932-645461 1.0000 100 chrIII:83-607 1.0000 100 chrIII:839-2079 1.0000 100 chrIII:14010-15245 1.0000 100 chrIII:30545-31177 1.0000 100 chrIII:58740-60302 1.0000 100 chrIII:82391-82672 1.0000 100 chrIII:90851-91135 1.0000 100 chrIII:123340-123811 1.0000 100 chrIII:127504-127876 1.0000 100 chrIII:142173-142959 1.0000 100 chrIII:149704-150267 1.0000 100 chrIII:151032-151525 1.0000 100 chrIII:163473-163889 1.0000 100 chrIII:168099-168554 1.0000 100 chrIII:178334-178770 1.0000 100 chrIII:227723-228436 1.0000 100 chrIII:295298-296104 1.0000 100 chrIII:315594-316029 1.0000 100 chrIV:83289-83817 1.0000 100 chrIV:117135-118235 1.0000 100 chrIV:118448-118788 1.0000 100 chrIV:129744-131011 1.0000 100 chrIV:216539-218073 1.0000 100 chrIV:221666-222360 1.0000 100 chrIV:229475-230498 1.0000 100 chrIV:308021-310092 1.0000 100 chrIV:321603-321966 1.0000 100 chrIV:341146-342417 1.0000 100 chrIV:355239-356975 1.0000 100 chrIV:358030-358504 1.0000 100 chrIV:359373-359794 1.0000 100 chrIV:410158-410786 1.0000 100 chrIV:411255-411656 1.0000 100 chrIV:434018-435106 1.0000 100 chrIV:437557-438189 1.0000 100 chrIV:465107-467612 1.0000 100 chrIV:488420-489128 1.0000 100 chrIV:490611-491280 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chrIV:1359172-1361100 1.0000 100 chrIV:1361298-1361494 1.0000 100 chrIV:1401239-1401942 1.0000 100 chrIV:1449895-1451314 1.0000 100 chrIV:1461454-1461844 1.0000 100 chrIX:25043-25293 1.0000 100 chrIX:68191-68519 1.0000 100 chrIX:98179-99402 1.0000 100 chrIX:99627-100042 1.0000 100 chrIX:174656-175399 1.0000 100 chrIX:183289-183697 1.0000 100 chrIX:197310-197828 1.0000 100 chrIX:210660-211004 1.0000 100 chrIX:215426-216300 1.0000 100 chrIX:248448-249428 1.0000 100 chrIX:254234-254540 1.0000 100 chrIX:255080-255861 1.0000 100 chrIX:256032-257119 1.0000 100 chrIX:257391-258246 1.0000 100 chrIX:300041-300521 1.0000 100 chrIX:315658-318269 1.0000 100 chrIX:322330-324375 1.0000 100 chrIX:325742-326157 1.0000 100 chrIX:336100-336645 1.0000 100 chrIX:370216-370729 1.0000 100 chrV:53512-54298 1.0000 100 chrV:61064-62172 1.0000 100 chrV:67145-68897 1.0000 100 chrV:85099-86967 1.0000 100 chrV:99855-100336 1.0000 100 chrV:117150-118305 1.0000 100 chrV:130794-131345 1.0000 100 chrV:135063-136096 1.0000 100 chrV:138430-140896 1.0000 100 chrV:166857-167882 1.0000 100 chrV:176899-177442 1.0000 100 chrV:207348-207547 1.0000 100 chrV:249183-249362 1.0000 100 chrV:249705-250540 1.0000 100 chrV:270390-270670 1.0000 100 chrV:288132-288782 1.0000 100 chrV:305811-307233 1.0000 100 chrV:311713-312288 1.0000 100 chrV:354687-355357 1.0000 100 chrV:361985-362482 1.0000 100 chrV:396156-397990 1.0000 100 chrV:423065-423501 1.0000 100 chrV:431022-432023 1.0000 100 chrV:434390-434978 1.0000 100 chrV:435562-436027 1.0000 100 chrV:438278-439015 1.0000 100 chrV:441789-442687 1.0000 100 chrV:442977-443363 1.0000 100 chrV:469118-470482 1.0000 100 chrV:487072-487585 1.0000 100 chrV:491772-492569 1.0000 100 chrV:551091-551574 1.0000 100 chrVI:63838-65414 1.0000 100 chrVI:95472-95865 1.0000 100 chrVI:101006-101688 1.0000 100 chrVI:137220-137699 1.0000 100 chrVI:157895-158224 1.0000 100 chrVI:162013-162871 1.0000 100 chrVI:167199-167686 1.0000 100 chrVI:180584-181271 1.0000 100 chrVI:190830-191785 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chrVIII:74883-76520 1.0000 100 chrVIII:103834-105424 1.0000 100 chrVIII:115696-116413 1.0000 100 chrVIII:119728-121721 1.0000 100 chrVIII:125895-126312 1.0000 100 chrVIII:134129-134756 1.0000 100 chrVIII:145311-146468 1.0000 100 chrVIII:148934-149457 1.0000 100 chrVIII:174865-176080 1.0000 100 chrVIII:237750-238346 1.0000 100 chrVIII:296634-297233 1.0000 100 chrVIII:358293-358776 1.0000 100 chrVIII:381435-382465 1.0000 100 chrVIII:382781-383373 1.0000 100 chrVIII:388682-389002 1.0000 100 chrVIII:411011-411947 1.0000 100 chrVIII:451311-452941 1.0000 100 chrVIII:466792-467318 1.0000 100 chrVIII:467520-467704 1.0000 100 chrVIII:475350-475920 1.0000 100 chrVIII:505819-506219 1.0000 100 chrVIII:555777-556431 1.0000 100 chrVIII:562393-562570 1.0000 100 chrX:58729-59435 1.0000 100 chrX:73388-74741 1.0000 100 chrX:74939-75718 1.0000 100 chrX:90025-90442 1.0000 100 chrX:115425-116227 1.0000 100 chrX:120309-121906 1.0000 100 chrX:139165-140266 1.0000 100 chrX:156563-157237 1.0000 100 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100 chrXV:779703-780973 1.0000 100 chrXV:781157-781327 1.0000 100 chrXV:853608-854777 1.0000 100 chrXV:866366-867322 1.0000 100 chrXV:925237-925790 1.0000 100 chrXV:968143-968608 1.0000 100 chrXV:976377-976758 1.0000 100 chrXV:978791-979148 1.0000 100 chrXV:979761-981029 1.0000 100 chrXV:1003912-1004962 1.0000 100 chrXV:1025692-1026060 1.0000 100 chrXV:1027774-1029583 1.0000 100 chrXVI:55866-56429 1.0000 100 chrXVI:76378-76765 1.0000 100 chrXVI:134796-135832 1.0000 100 chrXVI:172874-174057 1.0000 100 chrXVI:188289-188919 1.0000 100 chrXVI:209678-210501 1.0000 100 chrXVI:280575-282969 1.0000 100 chrXVI:296586-298461 1.0000 100 chrXVI:302632-304609 1.0000 100 chrXVI:338572-339173 1.0000 100 chrXVI:378659-379005 1.0000 100 chrXVI:404527-405984 1.0000 100 chrXVI:406204-408275 1.0000 100 chrXVI:432593-434300 1.0000 100 chrXVI:435536-436185 1.0000 100 chrXVI:519947-520527 1.0000 100 chrXVI:559898-560499 1.0000 100 chrXVI:572172-572768 1.0000 100 chrXVI:579760-580921 1.0000 100 chrXVI:581850-582335 1.0000 100 chrXVI:622060-622832 1.0000 100 chrXVI:645445-646212 1.0000 100 chrXVI:689262-689874 1.0000 100 chrXVI:699918-700686 1.0000 100 chrXVI:701870-702313 1.0000 100 chrXVI:718427-719521 1.0000 100 chrXVI:731921-732292 1.0000 100 chrXVI:744085-744577 1.0000 100 chrXVI:768921-769489 1.0000 100 chrXVI:775641-776084 1.0000 100 chrXVI:794459-796113 1.0000 100 chrXVI:810569-811225 1.0000 100 chrXVI:819328-819839 1.0000 100 chrXVI:856716-857114 1.0000 100 chrXVI:860162-860725 1.0000 100 chrXVI:878826-880574 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--YRR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--YRR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--YRR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 533 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 53300 N= 533 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.304 C 0.196 G 0.196 T 0.304 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--YRR1/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF GGTCVBSGGTTCGATYCCSSKHKDGRBCR MEME-1 width = 29 sites = 86 llr = 1583 E-value = 5.6e-317 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCVBSGGTTCGATYCCSSKHKDGRBCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 232:3112::::3a2::::2:31213125 pos.-specific C 2118443::::a::23a75424222227: probability G 662:2358a:::7:2:::344:54555:4 matrix T 1152:21::aa:::46:21:332321211 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * ** * * Relative 1.4 * ****** * Entropy 1.2 * ******* ** (26.5 bits) 1.0 * ******* *** * 0.7 * * ******** **** * 0.5 ** *********** ****** **** 0.2 ************** ************** 0.0 ----------------------------- Multilevel GGTCCCGGGTTCGATTCCCGGCGGGGGCA consensus AAATAGC A AC TGCTATT ACAG sequence G T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCVBSGGTTCGATYCCSSKHKDGRBCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:1256773-1257291 - 26 9.59e-14 CCCAAGCATG GGGCCCGGGTTCGATTCCCGGCTTCCGCA TTTTTTGTGC chrXVI:860162-860725 + 28 3.11e-13 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCA GATTTTATTT chrX:531584-532238 + 9 3.11e-13 CATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCA GTTTCTTTTC chrX:396528-397011 - 7 3.11e-13 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCA TTTCTT chrVII:845439-846014 + 15 3.11e-13 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCA ATGTTTTTTC chrIV:992722-993104 + 11 3.11e-13 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCA CTTTTTTAGC chrIII:123340-123811 - 52 1.56e-12 GGGTGCGGGA GGTCCCGGGTTCGAGTCCCGGCTCGCCCC ACATTGTTTT chrIV:1016972-1017482 - 30 1.24e-11 CTCACCGTGG AGACCGGGGTTCGACTCCCCGCTTCGGAG TTTCTTTTTT chrXVI:819328-819839 + 41 1.44e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCA TTTATTTTTG chrXIV:569717-570090 - 14 1.44e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCA TTCTTTTTTT chrVII:738875-739548 + 6 1.44e-11 GCGGG GATCAGCGGTTCGATCCCGCTAGAGACCA TTTACTTTTT chrV:551091-551574 - 3 1.44e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCA TT chrIV:667763-668264 - 44 1.44e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCA TTTTTATTTT chrII:197242-197849 + 44 1.44e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCA TTTTTTTGCA chrXV:853608-854777 - 45 3.42e-11 GCAAGGAAGA GGTCATCGGTTCGATTCCGGTTGCGTCCA ATTTTTAAGC chrXVI:581850-582335 + 64 4.52e-11 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCT TTCTTTTT chrXIII:480397-480839 - 53 4.52e-11 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCT TCTTTTTTTG chrX:414729-415363 + 14 4.52e-11 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCT AATATTTTTT chrV:435562-436027 - 8 4.52e-11 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCT TTCTTTT chrIII:151032-151525 - 56 4.52e-11 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCT TTCTTTTTTC chrXIV:96004-96474 - 52 5.18e-11 TCCAAGGTGG GGACACGGGTTCGATTCTCGTACCGCTCA AATTTTTTGA chrVII:779424-779938 + 28 5.18e-11 TCCAAGGTGG GGACACGGGTTCGATTCTCGTACCGCTCA AGATTACTTT chrXIII:290548-291217 + 12 8.84e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAG TCTTCTTTTT chrVII:541715-542169 + 1 8.84e-11 . AGACCGGGGTTCGACTCCCCGTATCGGAG TGTTCTTTTT chrV:487072-487585 - 53 8.84e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAG TATTCGTTAT chrV:354687-355357 + 5 8.84e-11 GTGG AGACCGGGGTTCGACTCCCCGTATCGGAG TACTTTTTTG chrV:176899-177442 + 22 8.84e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAG TACTTTTTTG chrIX:370216-370729 + 38 8.84e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAG TATGTTTATT chrII:644932-645461 + 64 8.84e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAG TTATTTTT chrXVI:768921-769489 - 52 3.50e-10 GATACCGAAA TGTCAGGGGTTCGAGCCCCCTATGAGGAG TTCTTTACTT chrXV:438429-439010 + 41 3.50e-10 GATACCGAAA TGTCAGGGGTTCGAGCCCCCTATGAGGAG TTCTTTATTT chrXII:426915-427451 + 42 3.50e-10 GTCGCGTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAG AATTTTTTTA chrXI:578760-579380 + 12 3.50e-10 GATACCGAAA TGTCAGGGGTTCGAGCCCCCTATGAGGAG TTCTTTACTT chrX:540789-542408 + 3 3.50e-10 CC AGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTTGG chrX:204538-205053 + 33 3.50e-10 GTCGCGTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTTTG chrIX:336100-336645 - 27 3.50e-10 GTCGCGTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTTAC chrIV:568682-569343 + 45 3.50e-10 GTCGCGTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAG AATTTTTTTT chrX:390802-391302 - 41 4.43e-10 ATAATCTGAA GGTCGAGAGTTCGAACCTCCCCTGGAGCA TATTTTTATA chrIV:1175740-1176063 + 22 4.43e-10 ATAATCTGAA GGTCGAGAGTTCGAACCTCCCCTGGAGCA TTTTTGCCGA chrXV:464280-464817 + 25 8.80e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAGCTCGCCCC TTTTATTTTT chrXIII:195925-196309 - 1 8.80e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAGCTCGCCCC chrXV:663406-664253 - 33 9.83e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTAAGAA chrXIII:586375-586920 - 39 9.83e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTTTGAA chrXI:307891-308451 - 23 9.83e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCA ATTTTTTTTT chrVII:823336-823703 + 58 9.83e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTTGAAG chrVIII:466792-467318 + 28 1.10e-09 GTAATGCAAA GGTCGCTAGTTCAATTCTGGCAGGTGGCA TTATACCGGT chrIV:802529-803023 - 5 1.10e-09 TTGATCCGGA CAACCCCGGTTCGAATCCGGGTAGGACCT CTTT chrIII:168099-168554 - 25 1.10e-09 TTGATCCGGA CAACCCCGGTTCGAATCCGGGTAGGACCT TTTTTTGAAT chrXIII:320924-321329 - 71 1.88e-09 A GGTCTCCGGTTCGATTCCGGACTCGTCCA TTTTTTATTT chrVII:774130-774644 + 56 1.88e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCGGACTCGTCCA AATTTTTTTA chrIV:410158-410786 + 1 1.88e-09 . GGTCTCCGGTTCGATTCCGGACTCGTCCA AATTATTTTT chrX:58729-59435 - 68 2.56e-09 TGGA GATCATCGGTTCAAATCCGATTGGAAGCA TATATTTGAT chrII:266182-266755 + 4 2.56e-09 GGA GATCATCGGTTCAAATCCGATTGGAAGCA TTTTTTTGAA chrXIII:131510-132121 - 60 3.14e-09 CTAATCAGAA GATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrX:374181-374899 - 16 3.14e-09 CTAATCAGAA GATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrII:405685-406230 + 14 3.14e-09 CTAATCAGAA GATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrV:130794-131345 - 63 3.48e-09 TGATCCGAA CAACCCCGGTTCGAATCCGGGTAAGACCT ATTTTTTTCC chrXV:228066-228682 + 52 4.24e-09 TTAATCGCAA GATCGTGAGTTCAACCCTCACTGGGGTCG TTATTTTTGA chrXII:975762-976185 - 60 4.24e-09 TTAATCGCAA GATCGTGAGTTCAACCCTCACTGGGGTCG TTTATTTTTT chrVII:730950-731442 + 36 4.24e-09 TTAATCGCAA GATCGTGAGTTCAACCCTCACTGGGGTCG TTTTTTGCTT chrXII:374195-374661 + 21 5.16e-09 CGAACCAGAA GATTCCAGGTTCAAGTCCTGGCGGGGAAG ATTTTTTTGC chrXI:490753-491347 + 12 5.16e-09 CGAACCAGAA GATTCCAGGTTCAAGTCCTGGCGGGGAAG AATTTTTTTA chrIV:619692-620267 - 40 5.16e-09 CGAACCAGAA GATTCCAGGTTCAAGTCCTGGCGGGGAAG ATTTTTTATA chrVII:700195-701270 + 46 6.25e-09 ATCTCTTCGG AGGCGCGGGTTCAAACCCCGCGGGTATCA ATATTTTTTT chrXVI:744085-744577 + 46 1.09e-08 GTAATGCAAA GGTCGTTAGTTCAATTCTGACAGGTGGCA AAATTTTTTC chrVII:661528-662096 + 30 1.09e-08 GTAATGCAAA GGTCGTTAGTTCAATTCTGACAGGTGGCA TAATTTTATA chrXIII:258955-259455 - 3 1.20e-08 TGGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGTCG TT chrIV:437557-438189 + 2 1.20e-08 C CCGCGCAGGTTCGAGTCCTGCAGTTGTCG TCATTTTTAT chrII:226964-227372 + 10 1.20e-08 GGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGTCG TTATTTTTTG chrIV:1095131-1095654 - 28 1.57e-08 GATATCTGGA GGTCCTGTGTTCGATCCACAGAGTTCGCA TTTTTATTTT chrXVI:55866-56429 - 72 1.87e-08 . GGTTGCAGGTTCAATTCCTGTCCGTTTCA ATTAATTTTT chrX:415634-416251 - 39 1.87e-08 GCAATCGAAG GGTTGCAGGTTCAATTCCTGTCCGTTTCA ATTTATTTTT chrV:207348-207547 + 3 3.37e-08 TG AAACCCTGGTTCGATTCTAGGAGATGGCA TATTTATTTT chrV:288132-288782 - 36 4.30e-08 TGGGCTCTGC CCGCGCTGGTTCAAATCCTGCTGGTGTCG TTTTTTTTAT chrIX:248448-249428 + 15 4.30e-08 TGGGCTCTGC CCGCGCTGGTTCAAATCCTGCTGGTGTCG TTATTTTTTT chrXV:274484-275031 + 38 5.46e-08 TGGGTTTTAC CTGCGCAGGTTCGAATCCTGTCTGTGACG CATTTCTTTT chrXVI:559898-560499 - 50 6.38e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAGAATTCGCA TTTCTATTTT chrXIII:837739-838314 + 12 1.25e-07 GAAATCTTGA GATCGGGCGTTCGACTCGCCCCCGGGAGA TATTTTTTTA chrIV:946136-946628 + 40 1.25e-07 GAAATCTTGA GATCGGGCGTTCGACTCGCCCCCGGGAGA TTTTTTTATG chrII:347408-347956 + 26 1.25e-07 GGACGGTTGT CCGCGCGAGTTCGAACCTCGCATCCTTCA GTAATATTTT chrXII:592131-593004 - 2 1.34e-07 ATATCTTCGG ATGCAAGGGTTCGAATCCCTTAGCTCTCA T chrX:617715-618253 + 57 1.34e-07 ATATCTTCGG ATGCAAGGGTTCGAATCCCTTAGCTCTCA TTATTTTTTG chrXVI:338572-339173 - 26 3.23e-07 ATAACCCTGA TGTCCTCGGATCGAAACCGAGCGGCGCTA AATTTATTTT chrIII:149704-150267 + 28 3.23e-07 ATAACCCTGA TGTCCTCGGATCGAAACCGAGCGGCGCTA TTAAATTTTT chrVII:422890-423498 + 33 1.25e-06 GTATCGTAAG ATGCAAGAGTTCGAATCTCTTAGCAACCA TTATTTTTTT chrIII:90851-91135 + 1 1.25e-06 . ATGCAAGAGTTCGAATCTCTTAGCAACCA TTATTTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCVBSGGTTCGATYCCSSKHKDGRBCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1256773-1257291 9.6e-14 25_[-1]_46 chrXVI:860162-860725 3.1e-13 27_[+1]_44 chrX:531584-532238 3.1e-13 8_[+1]_63 chrX:396528-397011 3.1e-13 6_[-1]_65 chrVII:845439-846014 3.1e-13 14_[+1]_57 chrIV:992722-993104 3.1e-13 10_[+1]_61 chrIII:123340-123811 1.6e-12 51_[-1]_20 chrIV:1016972-1017482 1.2e-11 29_[-1]_42 chrXVI:819328-819839 1.4e-11 40_[+1]_31 chrXIV:569717-570090 1.4e-11 13_[-1]_58 chrVII:738875-739548 1.4e-11 5_[+1]_66 chrV:551091-551574 1.4e-11 2_[-1]_69 chrIV:667763-668264 1.4e-11 43_[-1]_28 chrII:197242-197849 1.4e-11 43_[+1]_28 chrXV:853608-854777 3.4e-11 44_[-1]_27 chrXVI:581850-582335 4.5e-11 63_[+1]_8 chrXIII:480397-480839 4.5e-11 52_[-1]_19 chrX:414729-415363 4.5e-11 13_[+1]_58 chrV:435562-436027 4.5e-11 7_[-1]_64 chrIII:151032-151525 4.5e-11 55_[-1]_16 chrXIV:96004-96474 5.2e-11 51_[-1]_20 chrVII:779424-779938 5.2e-11 27_[+1]_44 chrXIII:290548-291217 8.8e-11 11_[+1]_60 chrVII:541715-542169 8.8e-11 [+1]_71 chrV:487072-487585 8.8e-11 52_[-1]_19 chrV:354687-355357 8.8e-11 4_[+1]_67 chrV:176899-177442 8.8e-11 21_[+1]_50 chrIX:370216-370729 8.8e-11 37_[+1]_34 chrII:644932-645461 8.8e-11 63_[+1]_8 chrXVI:768921-769489 3.5e-10 51_[-1]_20 chrXV:438429-439010 3.5e-10 40_[+1]_31 chrXII:426915-427451 3.5e-10 41_[+1]_30 chrXI:578760-579380 3.5e-10 11_[+1]_60 chrX:540789-542408 3.5e-10 2_[+1]_69 chrX:204538-205053 3.5e-10 32_[+1]_39 chrIX:336100-336645 3.5e-10 26_[-1]_45 chrIV:568682-569343 3.5e-10 44_[+1]_27 chrX:390802-391302 4.4e-10 40_[-1]_31 chrIV:1175740-1176063 4.4e-10 21_[+1]_50 chrXV:464280-464817 8.8e-10 24_[+1]_47 chrXIII:195925-196309 8.8e-10 [-1]_71 chrXV:663406-664253 9.8e-10 32_[-1]_39 chrXIII:586375-586920 9.8e-10 38_[-1]_33 chrXI:307891-308451 9.8e-10 22_[-1]_49 chrVII:823336-823703 9.8e-10 57_[+1]_14 chrVIII:466792-467318 1.1e-09 27_[+1]_44 chrIV:802529-803023 1.1e-09 4_[-1]_67 chrIII:168099-168554 1.1e-09 24_[-1]_47 chrXIII:320924-321329 1.9e-09 70_[-1]_1 chrVII:774130-774644 1.9e-09 55_[+1]_16 chrIV:410158-410786 1.9e-09 [+1]_71 chrX:58729-59435 2.6e-09 67_[-1]_4 chrII:266182-266755 2.6e-09 3_[+1]_68 chrXIII:131510-132121 3.1e-09 59_[-1]_12 chrX:374181-374899 3.1e-09 15_[-1]_56 chrII:405685-406230 3.1e-09 13_[+1]_58 chrV:130794-131345 3.5e-09 62_[-1]_9 chrXV:228066-228682 4.2e-09 51_[+1]_20 chrXII:975762-976185 4.2e-09 59_[-1]_12 chrVII:730950-731442 4.2e-09 35_[+1]_36 chrXII:374195-374661 5.2e-09 20_[+1]_51 chrXI:490753-491347 5.2e-09 11_[+1]_60 chrIV:619692-620267 5.2e-09 39_[-1]_32 chrVII:700195-701270 6.3e-09 45_[+1]_26 chrXVI:744085-744577 1.1e-08 45_[+1]_26 chrVII:661528-662096 1.1e-08 29_[+1]_42 chrXIII:258955-259455 1.2e-08 2_[-1]_69 chrIV:437557-438189 1.2e-08 1_[+1]_70 chrII:226964-227372 1.2e-08 9_[+1]_62 chrIV:1095131-1095654 1.6e-08 27_[-1]_44 chrXVI:55866-56429 1.9e-08 71_[-1] chrX:415634-416251 1.9e-08 38_[-1]_33 chrV:207348-207547 3.4e-08 2_[+1]_69 chrV:288132-288782 4.3e-08 35_[-1]_36 chrIX:248448-249428 4.3e-08 14_[+1]_57 chrXV:274484-275031 5.5e-08 37_[+1]_34 chrXVI:559898-560499 6.4e-08 49_[-1]_22 chrXIII:837739-838314 1.2e-07 11_[+1]_60 chrIV:946136-946628 1.2e-07 39_[+1]_32 chrII:347408-347956 1.2e-07 25_[+1]_46 chrXII:592131-593004 1.3e-07 1_[-1]_70 chrX:617715-618253 1.3e-07 56_[+1]_15 chrXVI:338572-339173 3.2e-07 25_[-1]_46 chrIII:149704-150267 3.2e-07 27_[+1]_44 chrVII:422890-423498 1.2e-06 32_[+1]_39 chrIII:90851-91135 1.2e-06 [+1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCVBSGGTTCGATYCCSSKHKDGRBCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCVBSGGTTCGATYCCSSKHKDGRBCR width=29 seqs=86 chrIV:1256773-1257291 ( 26) GGGCCCGGGTTCGATTCCCGGCTTCCGCA 1 chrXVI:860162-860725 ( 28) GGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrX:531584-532238 ( 9) GGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrX:396528-397011 ( 7) GGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrVII:845439-846014 ( 15) GGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrIV:992722-993104 ( 11) GGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrIII:123340-123811 ( 52) GGTCCCGGGTTCGAGTCCCGGCTCGCCCC 1 chrIV:1016972-1017482 ( 30) AGACCGGGGTTCGACTCCCCGCTTCGGAG 1 chrXVI:819328-819839 ( 41) GATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrXIV:569717-570090 ( 14) GATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrVII:738875-739548 ( 6) GATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrV:551091-551574 ( 3) GATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrIV:667763-668264 ( 44) GATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrII:197242-197849 ( 44) GATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrXV:853608-854777 ( 45) GGTCATCGGTTCGATTCCGGTTGCGTCCA 1 chrXVI:581850-582335 ( 64) GGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrXIII:480397-480839 ( 53) GGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrX:414729-415363 ( 14) GGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrV:435562-436027 ( 8) GGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrIII:151032-151525 ( 56) GGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrXIV:96004-96474 ( 52) GGACACGGGTTCGATTCTCGTACCGCTCA 1 chrVII:779424-779938 ( 28) GGACACGGGTTCGATTCTCGTACCGCTCA 1 chrXIII:290548-291217 ( 12) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrVII:541715-542169 ( 1) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrV:487072-487585 ( 53) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrV:354687-355357 ( 5) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrV:176899-177442 ( 22) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrIX:370216-370729 ( 38) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrII:644932-645461 ( 64) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrXVI:768921-769489 ( 52) TGTCAGGGGTTCGAGCCCCCTATGAGGAG 1 chrXV:438429-439010 ( 41) TGTCAGGGGTTCGAGCCCCCTATGAGGAG 1 chrXII:426915-427451 ( 42) AGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrXI:578760-579380 ( 12) TGTCAGGGGTTCGAGCCCCCTATGAGGAG 1 chrX:540789-542408 ( 3) AGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrX:204538-205053 ( 33) AGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrIX:336100-336645 ( 27) AGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrIV:568682-569343 ( 45) AGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrX:390802-391302 ( 41) GGTCGAGAGTTCGAACCTCCCCTGGAGCA 1 chrIV:1175740-1176063 ( 22) GGTCGAGAGTTCGAACCTCCCCTGGAGCA 1 chrXV:464280-464817 ( 25) GGCCCTGGGTTCAATTCCCAGCTCGCCCC 1 chrXIII:195925-196309 ( 1) GGCCCTGGGTTCAATTCCCAGCTCGCCCC 1 chrXV:663406-664253 ( 33) CGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXIII:586375-586920 ( 39) CGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXI:307891-308451 ( 23) CGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrVII:823336-823703 ( 58) CGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrVIII:466792-467318 ( 28) GGTCGCTAGTTCAATTCTGGCAGGTGGCA 1 chrIV:802529-803023 ( 5) CAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrIII:168099-168554 ( 25) CAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrXIII:320924-321329 ( 71) GGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrVII:774130-774644 ( 56) GGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrIV:410158-410786 ( 1) GGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrX:58729-59435 ( 68) GATCATCGGTTCAAATCCGATTGGAAGCA 1 chrII:266182-266755 ( 4) GATCATCGGTTCAAATCCGATTGGAAGCA 1 chrXIII:131510-132121 ( 60) GATTATGGGTTCGACCCCCATCGTGAGTG 1 chrX:374181-374899 ( 16) GATTATGGGTTCGACCCCCATCGTGAGTG 1 chrII:405685-406230 ( 14) GATTATGGGTTCGACCCCCATCGTGAGTG 1 chrV:130794-131345 ( 63) CAACCCCGGTTCGAATCCGGGTAAGACCT 1 chrXV:228066-228682 ( 52) GATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrXII:975762-976185 ( 60) GATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrVII:730950-731442 ( 36) GATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrXII:374195-374661 ( 21) GATTCCAGGTTCAAGTCCTGGCGGGGAAG 1 chrXI:490753-491347 ( 12) GATTCCAGGTTCAAGTCCTGGCGGGGAAG 1 chrIV:619692-620267 ( 40) GATTCCAGGTTCAAGTCCTGGCGGGGAAG 1 chrVII:700195-701270 ( 46) AGGCGCGGGTTCAAACCCCGCGGGTATCA 1 chrXVI:744085-744577 ( 46) GGTCGTTAGTTCAATTCTGACAGGTGGCA 1 chrVII:661528-662096 ( 30) GGTCGTTAGTTCAATTCTGACAGGTGGCA 1 chrXIII:258955-259455 ( 3) CCGCGCAGGTTCGAGTCCTGCAGTTGTCG 1 chrIV:437557-438189 ( 2) CCGCGCAGGTTCGAGTCCTGCAGTTGTCG 1 chrII:226964-227372 ( 10) CCGCGCAGGTTCGAGTCCTGCAGTTGTCG 1 chrIV:1095131-1095654 ( 28) GGTCCTGTGTTCGATCCACAGAGTTCGCA 1 chrXVI:55866-56429 ( 72) GGTTGCAGGTTCAATTCCTGTCCGTTTCA 1 chrX:415634-416251 ( 39) GGTTGCAGGTTCAATTCCTGTCCGTTTCA 1 chrV:207348-207547 ( 3) AAACCCTGGTTCGATTCTAGGAGATGGCA 1 chrV:288132-288782 ( 36) CCGCGCTGGTTCAAATCCTGCTGGTGTCG 1 chrIX:248448-249428 ( 15) CCGCGCTGGTTCAAATCCTGCTGGTGTCG 1 chrXV:274484-275031 ( 38) CTGCGCAGGTTCGAATCCTGTCTGTGACG 1 chrXVI:559898-560499 ( 50) GGTCCTGTGTTCGATCCACAGAATTCGCA 1 chrXIII:837739-838314 ( 12) GATCGGGCGTTCGACTCGCCCCCGGGAGA 1 chrIV:946136-946628 ( 40) GATCGGGCGTTCGACTCGCCCCCGGGAGA 1 chrII:347408-347956 ( 26) CCGCGCGAGTTCGAACCTCGCATCCTTCA 1 chrXII:592131-593004 ( 2) ATGCAAGGGTTCGAATCCCTTAGCTCTCA 1 chrX:617715-618253 ( 57) ATGCAAGGGTTCGAATCCCTTAGCTCTCA 1 chrXVI:338572-339173 ( 26) TGTCCTCGGATCGAAACCGAGCGGCGCTA 1 chrIII:149704-150267 ( 28) TGTCCTCGGATCGAAACCGAGCGGCGCTA 1 chrVII:422890-423498 ( 33) ATGCAAGAGTTCGAATCTCTTAGCAACCA 1 chrIII:90851-91135 ( 1) ATGCAAGAGTTCGAATCTCTTAGCAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCVBSGGTTCGATYCCSSKHKDGRBCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 38376 bayes= 10.6663 E= 5.6e-317 -49 -22 155 -241 -21 -145 167 -241 -49 -122 -33 82 -1307 206 -1307 -57 -4 118 29 -315 -215 106 83 -65 -157 67 146 -215 -83 -303 203 -373 -1307 -1307 240 -1307 -373 -1307 -1307 166 -1307 -1307 -1307 169 -1307 240 -1307 -1307 -21 -1307 195 -1307 169 -1307 -1307 -1307 -57 -3 -12 47 -373 88 -1307 102 -1307 240 -1307 -1307 -373 197 -303 -57 -473 146 83 -128 -74 92 110 -274 -315 6 118 12 17 97 -403 -21 -128 -3 125 -41 -65 -22 101 -28 -128 6 133 -65 -21 -12 133 -193 -215 29 129 -41 -49 188 -303 -241 72 -245 92 -174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCVBSGGTTCGATYCCSSKHKDGRBCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 86 E= 5.6e-317 0.220930 0.162791 0.558140 0.058140 0.267442 0.069767 0.604651 0.058140 0.220930 0.081395 0.151163 0.546512 0.000000 0.790698 0.000000 0.209302 0.302326 0.430233 0.232558 0.034884 0.069767 0.395349 0.337209 0.197674 0.104651 0.302326 0.523256 0.069767 0.174419 0.023256 0.779070 0.023256 0.000000 0.000000 1.000000 0.000000 0.023256 0.000000 0.000000 0.976744 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.267442 0.000000 0.732558 0.000000 1.000000 0.000000 0.000000 0.000000 0.209302 0.186047 0.174419 0.430233 0.023256 0.348837 0.000000 0.627907 0.000000 1.000000 0.000000 0.000000 0.023256 0.744186 0.023256 0.209302 0.011628 0.523256 0.337209 0.127907 0.186047 0.360465 0.406977 0.046512 0.034884 0.197674 0.430233 0.337209 0.348837 0.372093 0.011628 0.267442 0.127907 0.186047 0.453488 0.232558 0.197674 0.162791 0.383721 0.255814 0.127907 0.197674 0.476744 0.197674 0.267442 0.174419 0.476744 0.081395 0.069767 0.232558 0.465116 0.232558 0.220930 0.697674 0.023256 0.058140 0.511628 0.034884 0.360465 0.093023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCVBSGGTTCGATYCCSSKHKDGRBCR MEME-1 regular expression -------------------------------------------------------------------------------- [GA][GA][TA][CT][CAG][CG][GC]GGTTC[GA]A[TA][TC]C[CT][CG][GC][GT][CAT][GT][GT]G[GA][GCT][CA][AG] -------------------------------------------------------------------------------- Time 273.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCSAGTKGKTTAAGGC MEME-2 width = 18 sites = 26 llr = 516 E-value = 5.1e-083 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCSAGTKGKTTAAGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::1a::::::2a6::: pos.-specific C ::8a3::12::2::::28 probability G aa::5:a:5a5:::2a82 matrix T ::2:2::94:588:2::: bits 2.4 ** * * * * 2.2 ** * * * * 1.9 ** * * * * 1.7 **** ** * * *** Relative 1.4 **** *** * * *** Entropy 1.2 **** *** * * *** (28.6 bits) 1.0 **** *** ***** *** 0.7 **** ********* *** 0.5 ****************** 0.2 ****************** 0.0 ------------------ Multilevel GGCCGAGTGGGTTAAGGC consensus C T TCA G CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCSAGTKGKTTAAGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------ chrXII:592131-593004 - 77 1.27e-11 GAGTTT GGCCGAGTGGTTTAAGGC GTCAGATTTA chrXVI:819328-819839 + 4 3.41e-11 CTT GGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:602058-602557 + 63 3.41e-11 ATGGTCTCTT GGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:569717-570090 - 62 3.41e-11 ATGGTCTCTT GGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:734607-734996 + 59 3.41e-11 TTGGTCTCTT GGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:551091-551574 - 51 3.41e-11 CAGGTCTCTT GGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:183289-183697 - 45 3.41e-11 CTGGTCTCTT GGCCCAGTTGGTTAAGGC ACCGTGCTAA chrII:197242-197849 + 7 3.41e-11 TCTCTT GGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:725809-726587 - 44 4.32e-11 TTGGAGGGTT GGCCGAGTGGTCTAAGGC GGCAGACTTA chrXI:83984-84465 + 42 4.32e-11 ATGGAGGGTT GGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424270-424706 - 52 4.32e-11 ATGGAGGGTT GGCCGAGTGGTCTAAGGC GGCAGACTTA chrVII:700195-701270 + 1 4.32e-11 . GGCCGAGTGGTCTAAGGC GTCAGGTCGA chrXV:228066-228682 + 15 2.66e-10 TAGACTCCAT GGCCAAGTTGGTTAAGGC GTGCGACTGT chrXI:74402-74877 + 43 2.66e-10 TAGACTCCAT GGCCAAGTTGGTTAAGGC GTGCGACTGT chrXII:628197-628648 + 19 6.08e-10 GTGGTTGTTT GGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:205299-205844 + 8 6.08e-10 GTTGTTT GGCCGAGCGGTCTAAGGC GCCTGATTCA chrXVI:689262-689874 + 55 2.05e-09 TGGGCACTAT GGCCGAGTGGTTAAGGCG ACAGACTTGA chrXIII:258955-259455 - 59 2.05e-09 ATGGCAACTT GGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167819-168249 - 16 2.05e-09 ATGGCAACTT GGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1305386-1305865 + 63 2.05e-09 AAGGCAACTT GGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1150703-1151134 - 48 2.05e-09 CAGTCCCAGT GGCCGAGTGGTTAAGGCG ATGCCTGCTA chrXV:663406-664253 - 81 5.54e-09 GT GGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:420303-421004 - 33 5.54e-09 CAGGTTTCGT GGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:307891-308451 - 71 5.54e-09 GTGGTTTCGT GGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823336-823703 + 21 5.54e-09 GTGGTTTCGT GGTCTAGTCGGTTATGGC ATCTGCTTAA chrIX:174656-175399 + 62 6.01e-09 GAGCTTCTAT GGCCAAGTTGGTAAGGCG CCACACTAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCSAGTKGKTTAAGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:592131-593004 1.3e-11 76_[-2]_6 chrXVI:819328-819839 3.4e-11 3_[+2]_79 chrXIV:602058-602557 3.4e-11 62_[+2]_20 chrXIV:569717-570090 3.4e-11 61_[-2]_21 chrXII:734607-734996 3.4e-11 58_[+2]_24 chrV:551091-551574 3.4e-11 50_[-2]_32 chrIX:183289-183697 3.4e-11 44_[-2]_38 chrII:197242-197849 3.4e-11 6_[+2]_76 chrXIV:725809-726587 4.3e-11 43_[-2]_39 chrXI:83984-84465 4.3e-11 41_[+2]_41 chrX:424270-424706 4.3e-11 51_[-2]_31 chrVII:700195-701270 4.3e-11 [+2]_82 chrXV:228066-228682 2.7e-10 14_[+2]_68 chrXI:74402-74877 2.7e-10 42_[+2]_40 chrXII:628197-628648 6.1e-10 18_[+2]_64 chrVII:205299-205844 6.1e-10 7_[+2]_75 chrXVI:689262-689874 2e-09 54_[+2]_28 chrXIII:258955-259455 2e-09 58_[-2]_24 chrXII:167819-168249 2e-09 15_[-2]_67 chrIV:1305386-1305865 2e-09 62_[+2]_20 chrIV:1150703-1151134 2e-09 47_[-2]_35 chrXV:663406-664253 5.5e-09 80_[-2]_2 chrXIII:420303-421004 5.5e-09 32_[-2]_50 chrXI:307891-308451 5.5e-09 70_[-2]_12 chrVII:823336-823703 5.5e-09 20_[+2]_62 chrIX:174656-175399 6e-09 61_[+2]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCSAGTKGKTTAAGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCSAGTKGKTTAAGGC width=18 seqs=26 chrXII:592131-593004 ( 77) GGCCGAGTGGTTTAAGGC 1 chrXVI:819328-819839 ( 4) GGCCCAGTTGGTTAAGGC 1 chrXIV:602058-602557 ( 63) GGCCCAGTTGGTTAAGGC 1 chrXIV:569717-570090 ( 62) GGCCCAGTTGGTTAAGGC 1 chrXII:734607-734996 ( 59) GGCCCAGTTGGTTAAGGC 1 chrV:551091-551574 ( 51) GGCCCAGTTGGTTAAGGC 1 chrIX:183289-183697 ( 45) GGCCCAGTTGGTTAAGGC 1 chrII:197242-197849 ( 7) GGCCCAGTTGGTTAAGGC 1 chrXIV:725809-726587 ( 44) GGCCGAGTGGTCTAAGGC 1 chrXI:83984-84465 ( 42) GGCCGAGTGGTCTAAGGC 1 chrX:424270-424706 ( 52) GGCCGAGTGGTCTAAGGC 1 chrVII:700195-701270 ( 1) GGCCGAGTGGTCTAAGGC 1 chrXV:228066-228682 ( 15) GGCCAAGTTGGTTAAGGC 1 chrXI:74402-74877 ( 43) GGCCAAGTTGGTTAAGGC 1 chrXII:628197-628648 ( 19) GGCCGAGCGGTCTAAGGC 1 chrVII:205299-205844 ( 8) GGCCGAGCGGTCTAAGGC 1 chrXVI:689262-689874 ( 55) GGCCGAGTGGTTAAGGCG 1 chrXIII:258955-259455 ( 59) GGCCGAGTGGTTAAGGCG 1 chrXII:167819-168249 ( 16) GGCCGAGTGGTTAAGGCG 1 chrIV:1305386-1305865 ( 63) GGCCGAGTGGTTAAGGCG 1 chrIV:1150703-1151134 ( 48) GGCCGAGTGGTTAAGGCG 1 chrXV:663406-664253 ( 81) GGTCTAGTCGGTTATGGC 1 chrXIII:420303-421004 ( 33) GGTCTAGTCGGTTATGGC 1 chrXI:307891-308451 ( 71) GGTCTAGTCGGTTATGGC 1 chrVII:823336-823703 ( 21) GGTCTAGTCGGTTATGGC 1 chrIX:174656-175399 ( 62) GGCCAAGTTGGTAAGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCSAGTKGKTTAAGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 18 n= 44239 bayes= 12.6673 E= 5.1e-083 -1134 -1134 239 -1134 -1134 -1134 239 -1134 -1134 215 -1134 -101 -1134 239 -1134 -1134 -142 50 128 -101 169 -1134 -1134 -1134 -1134 -1134 239 -1134 -1134 -130 -1134 157 -1134 -31 128 31 -1134 -1134 239 -1134 -1134 -1134 150 57 -1134 28 -1134 131 -43 -1134 -1134 131 169 -1134 -1134 -1134 99 -1134 28 -101 -1134 -1134 239 -1134 -1134 28 202 -1134 -1134 202 28 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCSAGTKGKTTAAGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 18 nsites= 26 E= 5.1e-083 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.846154 0.000000 0.153846 0.000000 1.000000 0.000000 0.000000 0.115385 0.269231 0.461538 0.153846 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.000000 0.923077 0.000000 0.153846 0.461538 0.384615 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.538462 0.461538 0.000000 0.230769 0.000000 0.769231 0.230769 0.000000 0.000000 0.769231 1.000000 0.000000 0.000000 0.000000 0.615385 0.000000 0.230769 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 0.230769 0.769231 0.000000 0.000000 0.769231 0.230769 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCSAGTKGKTTAAGGC MEME-2 regular expression -------------------------------------------------------------------------------- GGCC[GC]AGT[GT]G[GT][TC][TA]A[AG]G[GC][CG] -------------------------------------------------------------------------------- Time 518.97 secs. ******************************************************************************** ******************************************************************************** MOTIF AVARBCKNACGYKMTAVCCAYTRMRCTAW MEME-3 width = 29 sites = 30 llr = 632 E-value = 2.0e-094 ******************************************************************************** -------------------------------------------------------------------------------- Motif AVARBCKNACGYKMTAVCCAYTRMRCTAW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 73a5::23622::4:74:28::646::a3 pos.-specific C 13::47:226:4:6:14a6:5::6:a2:2 probability G :3:533532:8:6::22:22::4:4:::: matrix T 21::2:32:2:64:a:::::5a::::8:5 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * * * * * Relative 1.4 * * * * * * * * Entropy 1.2 * * * ** * * * * * (30.4 bits) 1.0 ** * ***** * ********* 0.7 ** * ******* *********** 0.5 * ***** ******************** 0.2 ******* ********************* 0.0 ----------------------------- Multilevel AAAACCGAACGTGCTAACCACTACACTAT consensus C GGGTGGAACTA C GGT GAG C A sequence G T AT T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVARBCKNACGYKMTAVCCAYTRMRCTAW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIII:808074-808537 + 28 8.24e-13 TGTTCGGATC AGAACCGAAAGTGATAACCACTACACTAT AGGACCTTTT chrXII:448514-448958 + 1 1.62e-12 . AAAACCGAAAGTGATAACCACTACACTAT AGGACCGGAA chrIV:802529-803023 + 42 1.62e-12 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTAT AGGACCGACA chrIII:168099-168554 + 62 1.62e-12 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTAT AGGACCAGGA chrII:350614-351060 - 46 1.62e-12 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTAT AAAACCCTTT chrVII:115316-115719 - 27 1.91e-12 AATGCGCTTA AAAGCCGAACGCTCTACCAACTGAGCTAA CAAGGATGAG chrIV:359373-359794 - 50 1.91e-12 AATGCGCTTA AAAGCCGAACGCTCTACCAACTGAGCTAA CAAGGATGAG chrXVI:581850-582335 - 26 2.40e-11 CTTATGATTA AGAGTCATACGCGCTACCGATTGCGCCAA CAAGGCTCTT chrV:435562-436027 + 46 2.40e-11 CTTATGATTA AGAGTCATACGCGCTACCGATTGCGCCAA CAAGGCTCTT chrIX:300041-300521 + 35 2.40e-11 CTTATGATTA AGAGTCATACGCGCTACCGATTGCGCCAA CAAGGCTATT chrIV:1201513-1202007 - 46 2.40e-11 CTTATGATTA AGAGTCATACGCGCTACCGATTGCGCCAA CAAGGCTATT chrXI:140744-141460 + 3 8.39e-11 TG AAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAC chrIX:370216-370729 - 1 8.39e-11 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTAT chrIII:82391-82672 + 18 8.39e-11 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATAAC chrII:644932-645461 - 27 8.39e-11 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATAAT chrXII:426915-427451 - 5 1.69e-10 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACG chrX:355181-355756 - 44 1.69e-10 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrIX:336100-336645 + 64 1.69e-10 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGATT chrIV:1016972-1017482 + 67 1.69e-10 CTCCACGGTG AGAACGTGATGTGATAGCCGTTACACTAC ATCGG chrIV:568682-569343 - 8 1.69e-10 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGAA chrII:405685-406230 - 59 1.69e-10 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrXVI:856716-857114 - 43 3.49e-10 CTCTCCCATG CTAAGGGAGCGCGCTACCGACTACGCCAC ACGCCCGAAT chrVII:774130-774644 - 18 3.49e-10 CTCTCCCATG CTAAGGGAGCGCGCTACCGACTACGCCAC ACGCCCAATT chrIV:1075286-1075770 + 32 3.80e-10 CTTTGCCGTG TGAAGGCAACGTGATAGCCGCTACACTAT TGGAACAATA chrXIV:374655-375111 - 42 5.29e-10 AAGTTTTTCT TCAGTCTGGCGCTCTCCCAACTGAGCTAA GTCCGCTTAT chrVIII:358293-358776 + 51 5.29e-10 AGTTTTTTCT TCAGTCTGGCGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrII:36239-36592 - 39 5.29e-10 AAGTTTTTCT TCAGTCTGGCGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrVIII:62551-62942 - 65 6.52e-09 ATCGGCC ACAACGATGTGTACTAACCACTATACTAA GATGGCATAT chrIV:1256773-1257291 + 63 6.52e-09 CCCATGCTTG GGAAGCATGAATTCTAACCACTGAACCAC TTTCGCTAA chrXIII:572549-573342 + 26 9.57e-09 CTTCAGATTA TGAGACTGACGCTCTTCCTACTGAGCTAC TGAAGCTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVARBCKNACGYKMTAVCCAYTRMRCTAW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:808074-808537 8.2e-13 27_[+3]_44 chrXII:448514-448958 1.6e-12 [+3]_71 chrIV:802529-803023 1.6e-12 41_[+3]_30 chrIII:168099-168554 1.6e-12 61_[+3]_10 chrII:350614-351060 1.6e-12 45_[-3]_26 chrVII:115316-115719 1.9e-12 26_[-3]_45 chrIV:359373-359794 1.9e-12 49_[-3]_22 chrXVI:581850-582335 2.4e-11 25_[-3]_46 chrV:435562-436027 2.4e-11 45_[+3]_26 chrIX:300041-300521 2.4e-11 34_[+3]_37 chrIV:1201513-1202007 2.4e-11 45_[-3]_26 chrXI:140744-141460 8.4e-11 2_[+3]_69 chrIX:370216-370729 8.4e-11 [-3]_71 chrIII:82391-82672 8.4e-11 17_[+3]_54 chrII:644932-645461 8.4e-11 26_[-3]_45 chrXII:426915-427451 1.7e-10 4_[-3]_67 chrX:355181-355756 1.7e-10 43_[-3]_28 chrIX:336100-336645 1.7e-10 63_[+3]_8 chrIV:1016972-1017482 1.7e-10 66_[+3]_5 chrIV:568682-569343 1.7e-10 7_[-3]_64 chrII:405685-406230 1.7e-10 58_[-3]_13 chrXVI:856716-857114 3.5e-10 42_[-3]_29 chrVII:774130-774644 3.5e-10 17_[-3]_54 chrIV:1075286-1075770 3.8e-10 31_[+3]_40 chrXIV:374655-375111 5.3e-10 41_[-3]_30 chrVIII:358293-358776 5.3e-10 50_[+3]_21 chrII:36239-36592 5.3e-10 38_[-3]_33 chrVIII:62551-62942 6.5e-09 64_[-3]_7 chrIV:1256773-1257291 6.5e-09 62_[+3]_9 chrXIII:572549-573342 9.6e-09 25_[+3]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVARBCKNACGYKMTAVCCAYTRMRCTAW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AVARBCKNACGYKMTAVCCAYTRMRCTAW width=29 seqs=30 chrXIII:808074-808537 ( 28) AGAACCGAAAGTGATAACCACTACACTAT 1 chrXII:448514-448958 ( 1) AAAACCGAAAGTGATAACCACTACACTAT 1 chrIV:802529-803023 ( 42) AAAACCGAAAGTGATAACCACTACACTAT 1 chrIII:168099-168554 ( 62) AAAACCGAAAGTGATAACCACTACACTAT 1 chrII:350614-351060 ( 46) AAAACCGAAAGTGATAACCACTACACTAT 1 chrVII:115316-115719 ( 27) AAAGCCGAACGCTCTACCAACTGAGCTAA 1 chrIV:359373-359794 ( 50) AAAGCCGAACGCTCTACCAACTGAGCTAA 1 chrXVI:581850-582335 ( 26) AGAGTCATACGCGCTACCGATTGCGCCAA 1 chrV:435562-436027 ( 46) AGAGTCATACGCGCTACCGATTGCGCCAA 1 chrIX:300041-300521 ( 35) AGAGTCATACGCGCTACCGATTGCGCCAA 1 chrIV:1201513-1202007 ( 46) AGAGTCATACGCGCTACCGATTGCGCCAA 1 chrXI:140744-141460 ( 3) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrIX:370216-370729 ( 1) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrIII:82391-82672 ( 18) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrII:644932-645461 ( 27) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXII:426915-427451 ( 5) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrX:355181-355756 ( 44) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrIX:336100-336645 ( 64) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrIV:1016972-1017482 ( 67) AGAACGTGATGTGATAGCCGTTACACTAC 1 chrIV:568682-569343 ( 8) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrII:405685-406230 ( 59) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrXVI:856716-857114 ( 43) CTAAGGGAGCGCGCTACCGACTACGCCAC 1 chrVII:774130-774644 ( 18) CTAAGGGAGCGCGCTACCGACTACGCCAC 1 chrIV:1075286-1075770 ( 32) TGAAGGCAACGTGATAGCCGCTACACTAT 1 chrXIV:374655-375111 ( 42) TCAGTCTGGCGCTCTCCCAACTGAGCTAA 1 chrVIII:358293-358776 ( 51) TCAGTCTGGCGCTCTCCCAACTGAGCTAA 1 chrII:36239-36592 ( 39) TCAGTCTGGCGCTCTCCCAACTGAGCTAA 1 chrVIII:62551-62942 ( 65) ACAACGATGTGTACTAACCACTATACTAA 1 chrIV:1256773-1257291 ( 63) GGAAGCATGAATTCTAACCACTGAACCAC 1 chrXIII:572549-573342 ( 26) TGAGACTGACGCTCTTCCTACTGAGCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVARBCKNACGYKMTAVCCAYTRMRCTAW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 38376 bayes= 10.9945 E= 2.0e-094 124 -151 -251 -89 11 66 66 -222 169 -1155 -1155 -1155 78 -1155 130 -1155 -321 119 66 -41 -1155 188 66 -1155 -63 -251 130 -5 11 -19 66 -63 95 -19 30 -1155 -63 166 -1155 -63 -63 -1155 207 -1155 -1155 107 -1155 95 -321 -1155 158 37 24 174 -1155 -1155 -1155 -1155 -1155 169 118 -93 -19 -321 37 107 7 -1155 -1155 239 -1155 -1155 -89 166 7 -321 137 -1155 7 -1155 -1155 149 -1155 59 -1155 -1155 -1155 169 103 -1155 95 -1155 37 158 -1155 -321 95 -1155 107 -1155 -1155 239 -1155 -1155 -1155 30 -1155 131 169 -1155 -1155 -1155 11 -19 -1155 69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVARBCKNACGYKMTAVCCAYTRMRCTAW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 30 E= 2.0e-094 0.733333 0.066667 0.033333 0.166667 0.333333 0.300000 0.300000 0.066667 1.000000 0.000000 0.000000 0.000000 0.533333 0.000000 0.466667 0.000000 0.033333 0.433333 0.300000 0.233333 0.000000 0.700000 0.300000 0.000000 0.200000 0.033333 0.466667 0.300000 0.333333 0.166667 0.300000 0.200000 0.600000 0.166667 0.233333 0.000000 0.200000 0.600000 0.000000 0.200000 0.200000 0.000000 0.800000 0.000000 0.000000 0.400000 0.000000 0.600000 0.033333 0.000000 0.566667 0.400000 0.366667 0.633333 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.700000 0.100000 0.166667 0.033333 0.400000 0.400000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.600000 0.200000 0.033333 0.800000 0.000000 0.200000 0.000000 0.000000 0.533333 0.000000 0.466667 0.000000 0.000000 0.000000 1.000000 0.633333 0.000000 0.366667 0.000000 0.400000 0.566667 0.000000 0.033333 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.233333 0.000000 0.766667 1.000000 0.000000 0.000000 0.000000 0.333333 0.166667 0.000000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVARBCKNACGYKMTAVCCAYTRMRCTAW MEME-3 regular expression -------------------------------------------------------------------------------- A[ACG]A[AG][CGT][CG][GTA][AGT][AG][CAT][GA][TC][GT][CA]TA[ACG]C[CG][AG][CT]T[AG][CA][AG]C[TC]A[TA] -------------------------------------------------------------------------------- Time 767.13 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71756-73248 3.26e-01 100 chrI:81914-82368 4.86e-01 100 chrI:138942-139356 5.30e-04 52_[+2(1.49e-05)]_30 chrI:142158-143639 2.80e-03 23_[-2(5.04e-05)]_59 chrI:166169-166592 9.77e-01 100 chrI:181130-181641 2.54e-01 100 chrI:182201-183199 1.80e-01 100 chrII:9454-9970 9.15e-01 100 chrII:36239-36592 1.29e-07 38_[-3(5.29e-10)]_11_[+2(9.06e-05)]_\ 4 chrII:44808-45353 8.48e-01 100 chrII:45567-46827 1.99e-01 100 chrII:59507-61292 9.07e-01 100 chrII:87953-88553 3.86e-01 100 chrII:88960-90102 6.08e-01 100 chrII:165068-165441 1.24e-02 100 chrII:167559-169661 2.70e-01 100 chrII:181333-181705 7.66e-01 100 chrII:197242-197849 7.71e-16 6_[+2(3.41e-11)]_19_[+1(1.44e-11)]_\ 28 chrII:217025-217430 1.96e-01 100 chrII:226964-227372 1.24e-05 9_[+1(1.20e-08)]_62 chrII:254312-255792 9.69e-01 100 chrII:266182-266755 3.21e-05 3_[+1(2.56e-09)]_68 chrII:311222-311886 7.66e-01 100 chrII:326421-327076 5.90e-01 100 chrII:332069-332988 3.51e-01 100 chrII:347408-347956 8.11e-04 25_[+1(1.25e-07)]_46 chrII:350614-351060 2.40e-09 45_[-3(1.62e-12)]_26 chrII:393059-394925 9.80e-01 100 chrII:405685-406230 5.73e-12 13_[+1(3.14e-09)]_16_[-3(1.69e-10)]_\ 13 chrII:413108-416270 6.28e-01 100 chrII:476607-477750 3.44e-01 100 chrII:544030-545997 6.85e-01 100 chrII:592267-593627 1.74e-01 100 chrII:604085-607151 6.83e-01 100 chrII:642865-643258 4.41e-02 100 chrII:644932-645461 2.72e-14 26_[-3(8.39e-11)]_8_[+1(8.84e-11)]_\ 8 chrIII:83-607 3.73e-01 100 chrIII:839-2079 4.73e-01 100 chrIII:14010-15245 9.70e-01 100 chrIII:30545-31177 9.40e-01 100 chrIII:58740-60302 5.38e-01 100 chrIII:82391-82672 4.25e-07 17_[+3(8.39e-11)]_54 chrIII:90851-91135 3.30e-03 [+1(1.25e-06)]_71 chrIII:123340-123811 8.42e-09 51_[-1(1.56e-12)]_20 chrIII:127504-127876 4.80e-01 100 chrIII:142173-142959 9.11e-01 100 chrIII:149704-150267 4.40e-04 27_[+1(3.23e-07)]_44 chrIII:151032-151525 3.13e-07 55_[-1(4.52e-11)]_16 chrIII:163473-163889 4.55e-01 100 chrIII:168099-168554 6.85e-15 24_[-1(1.10e-09)]_8_[+3(1.62e-12)]_\ 10 chrIII:178334-178770 8.20e-01 100 chrIII:227723-228436 6.27e-01 100 chrIII:295298-296104 9.61e-01 100 chrIII:315594-316029 3.94e-01 100 chrIV:83289-83817 1.48e-03 44_[+2(2.98e-05)]_38 chrIV:117135-118235 7.69e-01 100 chrIV:118448-118788 9.82e-01 100 chrIV:129744-131011 6.25e-01 100 chrIV:216539-218073 1.54e-01 100 chrIV:221666-222360 4.70e-01 100 chrIV:229475-230498 5.88e-01 100 chrIV:308021-310092 5.75e-02 100 chrIV:321603-321966 5.69e-01 100 chrIV:341146-342417 2.17e-01 100 chrIV:355239-356975 9.75e-01 100 chrIV:358030-358504 9.74e-01 100 chrIV:359373-359794 5.19e-10 49_[-3(1.91e-12)]_22 chrIV:410158-410786 4.79e-06 [+1(1.88e-09)]_71 chrIV:411255-411656 3.69e-01 100 chrIV:434018-435106 7.13e-01 100 chrIV:437557-438189 6.77e-05 1_[+1(1.20e-08)]_70 chrIV:465107-467612 1.36e-01 100 chrIV:488420-489128 7.29e-01 100 chrIV:490611-491280 9.55e-01 100 chrIV:491456-492699 2.63e-01 100 chrIV:519651-520205 7.81e-01 100 chrIV:520510-521167 9.31e-01 100 chrIV:541208-541894 8.87e-01 100 chrIV:555779-556410 3.58e-01 100 chrIV:568682-569343 6.59e-13 7_[-3(1.69e-10)]_8_[+1(3.50e-10)]_\ 27 chrIV:578889-580785 3.11e-01 100 chrIV:600735-602185 3.53e-01 100 chrIV:619692-620267 2.12e-05 39_[-1(5.16e-09)]_32 chrIV:635756-636113 1.88e-03 6_[-2(1.08e-05)]_76 chrIV:644791-645390 8.55e-01 100 chrIV:667763-668264 1.06e-08 43_[-1(1.44e-11)]_28 chrIV:802529-803023 6.85e-15 4_[-1(1.10e-09)]_8_[+3(1.62e-12)]_\ 30 chrIV:835787-836246 4.78e-01 100 chrIV:884250-884626 7.61e-02 100 chrIV:915284-916239 4.72e-01 100 chrIV:946136-946628 2.32e-04 39_[+1(1.25e-07)]_32 chrIV:980727-981164 6.14e-01 100 chrIV:992722-993104 4.76e-09 10_[+1(3.11e-13)]_61 chrIV:1016972-1017482 2.03e-14 29_[-1(1.24e-11)]_8_[+3(1.69e-10)]_\ 5 chrIV:1075286-1075770 2.34e-06 31_[+3(3.80e-10)]_40 chrIV:1095131-1095654 2.17e-05 27_[-1(1.57e-08)]_44 chrIV:1150703-1151134 1.07e-05 47_[-2(2.05e-09)]_35 chrIV:1175740-1176063 1.74e-06 21_[+1(4.43e-10)]_50 chrIV:1201513-1202007 3.79e-08 45_[-3(2.40e-11)]_26 chrIV:1236556-1238477 9.76e-01 100 chrIV:1256773-1257291 2.66e-15 25_[-1(9.59e-14)]_8_[+3(6.52e-09)]_\ 9 chrIV:1300587-1301347 2.88e-02 100 chrIV:1305386-1305865 3.15e-06 62_[+2(2.05e-09)]_20 chrIV:1352206-1353080 9.08e-01 100 chrIV:1355739-1356007 8.33e-01 100 chrIV:1359172-1361100 3.57e-01 100 chrIV:1361298-1361494 7.00e-01 100 chrIV:1401239-1401942 3.24e-01 100 chrIV:1449895-1451314 8.26e-01 100 chrIV:1461454-1461844 1.50e-01 100 chrIX:25043-25293 1.83e-01 100 chrIX:68191-68519 7.45e-01 100 chrIX:98179-99402 7.61e-01 100 chrIX:99627-100042 6.01e-01 100 chrIX:174656-175399 6.96e-07 61_[+2(6.01e-09)]_21 chrIX:183289-183697 6.46e-09 44_[-2(3.41e-11)]_38 chrIX:197310-197828 5.76e-01 100 chrIX:210660-211004 6.49e-01 100 chrIX:215426-216300 1.71e-01 100 chrIX:248448-249428 5.13e-05 14_[+1(4.30e-08)]_57 chrIX:254234-254540 1.53e-01 100 chrIX:255080-255861 4.44e-01 100 chrIX:256032-257119 9.91e-01 100 chrIX:257391-258246 2.13e-01 100 chrIX:300041-300521 7.00e-09 34_[+3(2.40e-11)]_37 chrIX:315658-318269 5.59e-01 100 chrIX:322330-324375 9.53e-01 100 chrIX:325742-326157 9.90e-01 100 chrIX:336100-336645 5.75e-13 26_[-1(3.50e-10)]_8_[+3(1.69e-10)]_\ 8 chrIX:370216-370729 2.72e-14 [-3(8.39e-11)]_8_[+1(8.84e-11)]_34 chrV:53512-54298 9.82e-01 100 chrV:61064-62172 1.52e-01 100 chrV:67145-68897 9.45e-02 53_[+3(9.55e-05)]_18 chrV:85099-86967 7.70e-01 100 chrV:99855-100336 1.27e-02 73_[+2(7.59e-06)]_9 chrV:117150-118305 4.59e-01 100 chrV:130794-131345 2.03e-05 62_[-1(3.48e-09)]_9 chrV:135063-136096 9.81e-01 100 chrV:138430-140896 5.47e-01 100 chrV:166857-167882 5.20e-01 100 chrV:176899-177442 5.34e-07 21_[+1(8.84e-11)]_50 chrV:207348-207547 1.04e-04 2_[+1(3.37e-08)]_69 chrV:249183-249362 9.74e-01 100 chrV:249705-250540 4.56e-02 100 chrV:270390-270670 6.26e-01 100 chrV:288132-288782 1.38e-04 35_[-1(4.30e-08)]_36 chrV:305811-307233 5.38e-02 100 chrV:311713-312288 9.30e-01 100 chrV:354687-355357 1.84e-06 4_[+1(8.84e-11)]_67 chrV:361985-362482 9.60e-01 100 chrV:396156-397990 6.35e-01 100 chrV:423065-423501 7.94e-01 100 chrV:431022-432023 9.47e-01 100 chrV:434390-434978 4.10e-01 100 chrV:435562-436027 9.11e-16 7_[-1(4.52e-11)]_9_[+3(2.40e-11)]_\ 26 chrV:438278-439015 8.54e-01 100 chrV:441789-442687 1.39e-01 100 chrV:442977-443363 1.85e-01 100 chrV:469118-470482 6.01e-01 100 chrV:487072-487585 1.64e-07 52_[-1(8.84e-11)]_19 chrV:491772-492569 8.54e-01 100 chrV:551091-551574 7.71e-16 2_[-1(1.44e-11)]_19_[-2(3.41e-11)]_\ 32 chrVI:63838-65414 7.99e-01 100 chrVI:95472-95865 6.19e-02 100 chrVI:101006-101688 4.39e-02 78_[+2(1.49e-05)]_4 chrVI:137220-137699 2.93e-01 100 chrVI:157895-158224 9.90e-01 100 chrVI:162013-162871 1.99e-01 100 chrVI:167199-167686 2.15e-02 52_[+2(2.15e-05)]_30 chrVI:180584-181271 8.27e-01 100 chrVI:190830-191785 8.91e-01 100 chrVI:210423-211127 3.69e-01 100 chrVI:220806-222108 4.47e-01 100 chrVI:223197-224167 9.17e-01 100 chrVI:226622-227223 6.68e-01 100 chrVII:67248-67612 7.41e-01 100 chrVII:110344-110788 4.42e-01 100 chrVII:115316-115719 4.47e-10 26_[-3(1.91e-12)]_45 chrVII:121950-122487 5.75e-01 100 chrVII:148043-149527 5.57e-01 100 chrVII:185209-185886 3.84e-01 100 chrVII:205299-205844 1.13e-05 7_[+2(6.08e-10)]_75 chrVII:206032-206262 8.19e-01 100 chrVII:254108-254708 4.75e-01 100 chrVII:276981-278710 3.77e-02 100 chrVII:287149-287796 7.89e-01 100 chrVII:310488-312589 4.43e-02 31_[+2(7.75e-05)]_51 chrVII:319234-320168 8.57e-01 100 chrVII:328384-329177 9.78e-01 100 chrVII:364924-366695 9.97e-01 100 chrVII:371200-371570 1.64e-02 100 chrVII:398464-400548 6.24e-02 100 chrVII:400981-401615 9.53e-01 100 chrVII:405456-406013 7.80e-01 100 chrVII:406199-406594 9.90e-01 100 chrVII:411870-412594 7.58e-01 100 chrVII:422890-423498 3.63e-03 32_[+1(1.25e-06)]_39 chrVII:437245-439922 4.60e-01 100 chrVII:440263-441061 1.00e+00 100 chrVII:479158-482739 2.50e-01 100 chrVII:531389-532587 8.88e-01 100 chrVII:533517-535193 8.06e-01 100 chrVII:541715-542169 2.13e-06 [+1(8.84e-11)]_71 chrVII:544167-544884 8.88e-01 100 chrVII:555074-556695 9.60e-01 100 chrVII:556870-558268 9.41e-01 100 chrVII:609324-610143 9.89e-01 100 chrVII:648799-649365 6.73e-01 100 chrVII:661528-662096 8.31e-05 29_[+1(1.09e-08)]_42 chrVII:672652-675411 1.01e-01 100 chrVII:700195-701270 2.23e-12 [+2(4.32e-11)]_27_[+1(6.25e-09)]_26 chrVII:706921-707185 9.98e-01 100 chrVII:726388-728068 5.72e-01 100 chrVII:730950-731442 3.85e-06 35_[+1(4.24e-09)]_36 chrVII:736196-737262 7.38e-01 100 chrVII:738875-739548 1.17e-07 5_[+1(1.44e-11)]_66 chrVII:774130-774644 6.84e-14 17_[-3(3.49e-10)]_9_[+1(1.88e-09)]_\ 16 chrVII:779424-779938 9.07e-07 27_[+1(5.18e-11)]_44 chrVII:788327-788761 9.02e-01 100 chrVII:794114-794586 5.24e-01 100 chrVII:823336-823703 9.61e-12 20_[+2(5.54e-09)]_19_[+1(9.83e-10)]_\ 14 chrVII:828375-828990 4.12e-01 100 chrVII:845439-846014 4.62e-09 14_[+1(3.11e-13)]_57 chrVII:856748-857645 7.60e-01 100 chrVII:876147-878108 8.70e-01 100 chrVII:878557-879254 4.87e-01 100 chrVII:882351-883877 7.51e-02 100 chrVII:893166-895139 9.49e-01 100 chrVII:930879-931654 8.70e-01 100 chrVII:1003853-1004430 2.35e-01 100 chrVII:1052296-1052582 5.02e-02 100 chrVIII:34394-36718 1.46e-01 100 chrVIII:62551-62942 2.74e-05 64_[-3(6.52e-09)]_7 chrVIII:74883-76520 5.58e-03 100 chrVIII:103834-105424 5.27e-01 100 chrVIII:115696-116413 4.41e-01 100 chrVIII:119728-121721 2.04e-01 100 chrVIII:125895-126312 6.08e-01 100 chrVIII:134129-134756 6.48e-01 100 chrVIII:145311-146468 9.11e-01 100 chrVIII:148934-149457 7.45e-01 100 chrVIII:174865-176080 7.33e-01 100 chrVIII:237750-238346 6.26e-01 100 chrVIII:296634-297233 6.06e-01 100 chrVIII:358293-358776 2.31e-07 20_[-2(8.37e-05)]_12_[+3(5.29e-10)]_\ 21 chrVIII:381435-382465 5.08e-01 100 chrVIII:382781-383373 9.31e-01 100 chrVIII:388682-389002 7.51e-01 100 chrVIII:411011-411947 6.73e-01 100 chrVIII:451311-452941 4.26e-01 100 chrVIII:466792-467318 6.76e-06 27_[+1(1.10e-09)]_44 chrVIII:467520-467704 2.48e-01 100 chrVIII:475350-475920 9.67e-01 100 chrVIII:505819-506219 9.67e-01 100 chrVIII:555777-556431 8.77e-01 100 chrVIII:562393-562570 9.12e-01 100 chrX:58729-59435 3.10e-05 67_[-1(2.56e-09)]_4 chrX:73388-74741 9.53e-01 100 chrX:74939-75718 7.15e-01 100 chrX:90025-90442 9.72e-01 100 chrX:115425-116227 6.94e-01 100 chrX:120309-121906 3.03e-01 100 chrX:139165-140266 9.53e-01 100 chrX:156563-157237 8.56e-01 100 chrX:157450-157912 3.30e-01 100 chrX:196519-197447 8.47e-01 100 chrX:204538-205053 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100 chrXVI:744085-744577 4.85e-05 45_[+1(1.09e-08)]_26 chrXVI:768921-769489 6.37e-07 51_[-1(3.50e-10)]_20 chrXVI:775641-776084 5.46e-01 100 chrXVI:794459-796113 9.43e-01 100 chrXVI:810569-811225 9.98e-01 100 chrXVI:819328-819839 7.71e-16 3_[+2(3.41e-11)]_19_[+1(1.44e-11)]_\ 31 chrXVI:856716-857114 3.28e-08 42_[-3(3.49e-10)]_29 chrXVI:860162-860725 1.94e-09 27_[+1(3.11e-13)]_44 chrXVI:878826-880574 4.32e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************