******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--YAP1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:70273-70819 1.0000 100 chrI:71634-73699 1.0000 100 chrI:77952-79376 1.0000 100 chrI:138943-139362 1.0000 100 chrI:141226-143680 1.0000 100 chrI:166193-168217 1.0000 100 chrI:181167-181590 1.0000 100 chrI:182245-183147 1.0000 100 chrII:36243-36505 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chrXV:678004-678852 1.0000 100 chrXV:759011-759541 1.0000 100 chrXV:779879-781001 1.0000 100 chrXV:797044-797575 1.0000 100 chrXV:842350-843245 1.0000 100 chrXV:877562-878108 1.0000 100 chrXV:910678-911724 1.0000 100 chrXV:912132-912616 1.0000 100 chrXV:960962-966518 1.0000 100 chrXV:966680-967778 1.0000 100 chrXV:976392-978287 1.0000 100 chrXV:979724-981438 1.0000 100 chrXV:1005223-1006734 1.0000 100 chrXV:1027879-1029695 1.0000 100 chrXVI:55872-56371 1.0000 100 chrXVI:74967-76029 1.0000 100 chrXVI:88756-89475 1.0000 100 chrXVI:98523-99174 1.0000 100 chrXVI:173049-174083 1.0000 100 chrXVI:209645-210624 1.0000 100 chrXVI:214897-216404 1.0000 100 chrXVI:280468-281732 1.0000 100 chrXVI:282124-282934 1.0000 100 chrXVI:303338-304207 1.0000 100 chrXVI:310220-312853 1.0000 100 chrXVI:338485-339390 1.0000 100 chrXVI:351999-353080 1.0000 100 chrXVI:354289-354938 1.0000 100 chrXVI:377024-377372 1.0000 100 chrXVI:404801-405905 1.0000 100 chrXVI:425786-425974 1.0000 100 chrXVI:435553-436171 1.0000 100 chrXVI:559952-560513 1.0000 100 chrXVI:572261-572877 1.0000 100 chrXVI:581709-582296 1.0000 100 chrXVI:622355-623126 1.0000 100 chrXVI:678546-680824 1.0000 100 chrXVI:689282-689828 1.0000 100 chrXVI:701867-702450 1.0000 100 chrXVI:718302-719629 1.0000 100 chrXVI:730601-731329 1.0000 100 chrXVI:744053-744607 1.0000 100 chrXVI:768513-769440 1.0000 100 chrXVI:775681-776099 1.0000 100 chrXVI:810608-811443 1.0000 100 chrXVI:819089-820390 1.0000 100 chrXVI:821651-822231 1.0000 100 chrXVI:822601-824090 1.0000 100 chrXVI:842859-843590 1.0000 100 chrXVI:856765-857081 1.0000 100 chrXVI:858863-860622 1.0000 100 chrXVI:879655-880550 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--YAP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--YAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--YAP1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 568 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56800 N= 568 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.313 C 0.187 G 0.187 T 0.313 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--YAP1/background): A 0.313 C 0.187 G 0.187 T 0.313 ******************************************************************************** ******************************************************************************** MOTIF RAGRTCSYGGGTTCGANYCYBVBHGRGRNC MEME-1 width = 30 sites = 46 llr = 817 E-value = 2.7e-114 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGRTCSYGGGTTCGANYCYBVBHGRGRNC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 56151:2:22:1::3a3:1::3:3131421 pos.-specific C :231184522::1a::34964344211127 probability G 42632:42559:::7:2::1454:545531 matrix T 1:::62:31:199:::36:32:23223:3: bits 2.4 * 2.2 * 1.9 * * 1.7 * * * * * Relative 1.4 * * *** * Entropy 1.2 * ****** * * (25.6 bits) 1.0 * * ****** ** * 0.7 * ** ****** *** ** * 0.5 **** *********** ******** ** * 0.2 **************** *********** * 0.0 ------------------------------ Multilevel AAGATCGCGGGTTCGATTCCCGGCGGGGGC consensus G CG CTCA A AC TGACACATAT sequence C CTT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCSYGGGTTCGANYCYBVBHGRGRNC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:488500-489162 - 17 5.49e-12 TTACACGGCG AAGATCCCGAGTTCGAACCTCGGTTGGATC AGAATCTTTT chrXIII:807979-808561 - 27 1.00e-11 TTCTGATCCG AACAACCCCAGTTCGAATCCGGGTGGGACC TTCCCTTCAT chrXIII:168692-169018 + 48 1.79e-11 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTTT chrVI:210308-210916 - 58 1.79e-11 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTTT chrVI:167283-167782 + 13 1.79e-11 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTTT chrIV:946184-946601 + 28 1.79e-11 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGAG ATTTTTTTAT chrXIV:632474-632892 + 9 2.37e-11 TTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTTTC chrVII:730987-731416 + 29 2.37e-11 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTGCT chrVI:137259-137674 - 71 2.37e-11 . AAGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTTAT chrXIV:569736-570043 - 29 6.98e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGACC ATTCTTTTTT chrX:538491-538771 + 15 6.98e-11 TCCTAAGGAG AAGACTGCGGGTTCGAGTCCCGTACGGAAC GTTGATTATT chrXIII:572695-573127 - 23 7.95e-11 TCATAATCTG AAGGTCGAGAGTTCGAACCTCCCCTGGAGC ACATTTTTTT chrXIII:586397-586937 - 20 1.03e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTTGA chrX:378264-378559 + 42 1.03e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC AATTTTTTGT chrVII:823367-823708 + 38 1.03e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTGAA chrV:435515-435982 - 55 1.17e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TTTCTTTTTA chrII:350579-351132 + 63 1.17e-10 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAAGACC TTATTTTT chrIV:992755-992983 + 53 1.32e-10 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCGC ACTTTTTTAG chrV:130787-131419 - 30 1.92e-10 TTTTGATCCG AACAACCCCGGTTCGAATCCGGGTAAGACC TATTTTTTTC chrIV:884280-884693 + 27 2.17e-10 AAGCAACGCG ACCGTCGTGGGTTCAAACCCCACCTCGAGC ACTTTCTCTT chrXIII:195952-196269 - 9 4.42e-10 AAGCATGCGA GAGGCCCTGGGTTCAATTCCCAGCTCGCCC CTTTTTTT chrV:311749-312298 - 51 4.42e-10 TTGCAAGGAA GAGGTCATCGGTTCGATTCCGGTTGCGTCC AATGAAATCT chrXII:167553-168315 - 61 6.97e-10 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTATTTTTT chrIV:437553-438116 + 39 6.97e-10 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTCATTTTTA chrII:226997-227347 + 4 6.97e-10 TTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTATTTTTT chrXVI:744053-744607 + 45 8.72e-10 TTGTAATGCA AAGGTCGTTAGTTCAATTCTGACAGGTGGC AAAATTTTTT chrXV:339784-340794 - 61 8.72e-10 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGAA GATTTTTTTT chrV:492203-492549 - 27 8.72e-10 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGAA GGATTATTTT chrIII:227797-228199 + 64 1.50e-09 CTTGGGCTCT GCCCGCGCTGGTTCAAATCCTGCTGGTGTC GTTTAAT chrIII:295320-295816 + 8 1.67e-09 TAATGTG GAGATCATCGGTTCAAATCCGATTGGAAGC ATTTTTTATC chrX:374174-374803 - 69 5.63e-09 AG AAGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrIV:568565-569341 + 20 5.63e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrXIV:374732-375092 + 67 9.06e-09 AAGTCATCTG GAGGTCCTGTGTTCGATCCACAGAGTTCGC AATT chrVI:190996-191994 - 69 9.06e-09 TT ACCTGCGCAGGTTCGAATCCTGTCTGTGAC GCATTTCTTT chrVII:287068-287616 - 59 1.87e-08 TTGCAATCGA AGGGTTGCAGGTTCAATTCCTGTCCGTTTC ATTTTTTATA chrII:642855-643249 - 6 4.40e-08 TGCAAATCTG TTGGTCCTTAGTTCGATCCTGAGTGCGAGC TTCTT chrVII:115368-115703 + 68 6.09e-08 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGGA GTT chrXVI:559952-560513 - 17 7.72e-08 AAGTTATCTG GAGGTCCTGTGTTCGATCCACAGAATTCGC ATTTCTATTT chrVIII:62395-63257 + 20 7.72e-08 TTGTGGCCGA TGAAACCCTGGTTCGATTCTAGGAGATGGC ATTTATTTTT chrV:434375-434734 - 38 7.72e-08 TTGTGGCCGA TGAAACCCTGGTTCGATTCTAGGAGATGGC ATTTTCTTTT chrXVI:856765-857081 - 30 2.53e-07 CCCATGCTAA GGGAGCGCGCTACCGACTACGCCACACGCC CGAATCTTGT chrVII:774186-774536 - 39 2.53e-07 CCCATGCTAA GGGAGCGCGCTACCGACTACGCCACACGCC CAATTAATTG chrIV:410006-410798 - 28 2.53e-07 CCCATGCTAA GGGAGCGCGCTACCGACTACGCCACACGCC CAATATTTGT chrIV:1256847-1257271 + 2 4.66e-07 C GGAAGCCGGGAATCGAACCCGGGCCCCATG CTTGGGAAGC chrIV:802572-802993 + 2 1.34e-06 G TCCTACCCGGATTCGAACCGGGGTTGTCCG GATCAAAACC chrXVI:581709-582296 + 48 4.69e-05 ATTTTATCGT TAGGTTCACCTTCCAAATATTCGTTAGATA AAGATGTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCSYGGGTTCGANYCYBVBHGRGRNC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:488500-489162 5.5e-12 16_[-1]_54 chrXIII:807979-808561 1e-11 26_[-1]_44 chrXIII:168692-169018 1.8e-11 47_[+1]_23 chrVI:210308-210916 1.8e-11 57_[-1]_13 chrVI:167283-167782 1.8e-11 12_[+1]_58 chrIV:946184-946601 1.8e-11 27_[+1]_43 chrXIV:632474-632892 2.4e-11 8_[+1]_62 chrVII:730987-731416 2.4e-11 28_[+1]_42 chrVI:137259-137674 2.4e-11 70_[-1] chrXIV:569736-570043 7e-11 28_[-1]_42 chrX:538491-538771 7e-11 14_[+1]_56 chrXIII:572695-573127 8e-11 22_[-1]_48 chrXIII:586397-586937 1e-10 19_[-1]_51 chrX:378264-378559 1e-10 41_[+1]_29 chrVII:823367-823708 1e-10 37_[+1]_33 chrV:435515-435982 1.2e-10 54_[-1]_16 chrII:350579-351132 1.2e-10 62_[+1]_8 chrIV:992755-992983 1.3e-10 52_[+1]_18 chrV:130787-131419 1.9e-10 29_[-1]_41 chrIV:884280-884693 2.2e-10 26_[+1]_44 chrXIII:195952-196269 4.4e-10 8_[-1]_62 chrV:311749-312298 4.4e-10 50_[-1]_20 chrXII:167553-168315 7e-10 60_[-1]_10 chrIV:437553-438116 7e-10 38_[+1]_32 chrII:226997-227347 7e-10 3_[+1]_67 chrXVI:744053-744607 8.7e-10 44_[+1]_26 chrXV:339784-340794 8.7e-10 60_[-1]_10 chrV:492203-492549 8.7e-10 26_[-1]_44 chrIII:227797-228199 1.5e-09 63_[+1]_7 chrIII:295320-295816 1.7e-09 7_[+1]_63 chrX:374174-374803 5.6e-09 68_[-1]_2 chrIV:568565-569341 5.6e-09 19_[+1]_51 chrXIV:374732-375092 9.1e-09 66_[+1]_4 chrVI:190996-191994 9.1e-09 68_[-1]_2 chrVII:287068-287616 1.9e-08 58_[-1]_12 chrII:642855-643249 4.4e-08 5_[-1]_65 chrVII:115368-115703 6.1e-08 67_[+1]_3 chrXVI:559952-560513 7.7e-08 16_[-1]_54 chrVIII:62395-63257 7.7e-08 19_[+1]_51 chrV:434375-434734 7.7e-08 37_[-1]_33 chrXVI:856765-857081 2.5e-07 29_[-1]_41 chrVII:774186-774536 2.5e-07 38_[-1]_32 chrIV:410006-410798 2.5e-07 27_[-1]_43 chrIV:1256847-1257271 4.7e-07 1_[+1]_69 chrIV:802572-802993 1.3e-06 1_[+1]_69 chrXVI:581709-582296 4.7e-05 47_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCSYGGGTTCGANYCYBVBHGRGRNC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGRTCSYGGGTTCGANYCYBVBHGRGRNC width=30 seqs=46 chrIV:488500-489162 ( 17) AAGATCCCGAGTTCGAACCTCGGTTGGATC 1 chrXIII:807979-808561 ( 27) AACAACCCCAGTTCGAATCCGGGTGGGACC 1 chrXIII:168692-169018 ( 48) GAGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrVI:210308-210916 ( 58) GAGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrVI:167283-167782 ( 13) GAGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrIV:946184-946601 ( 28) GAGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrXIV:632474-632892 ( 9) AAGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrVII:730987-731416 ( 29) AAGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrVI:137259-137674 ( 71) AAGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrXIV:569736-570043 ( 29) GGGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrX:538491-538771 ( 15) AAGACTGCGGGTTCGAGTCCCGTACGGAAC 1 chrXIII:572695-573127 ( 23) AAGGTCGAGAGTTCGAACCTCCCCTGGAGC 1 chrXIII:586397-586937 ( 20) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrX:378264-378559 ( 42) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrVII:823367-823708 ( 38) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrV:435515-435982 ( 55) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrII:350579-351132 ( 63) GACAACCCCGGTTCGAATCCGGGTAAGACC 1 chrIV:992755-992983 ( 53) TGGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrV:130787-131419 ( 30) AACAACCCCGGTTCGAATCCGGGTAAGACC 1 chrIV:884280-884693 ( 27) ACCGTCGTGGGTTCAAACCCCACCTCGAGC 1 chrXIII:195952-196269 ( 9) GAGGCCCTGGGTTCAATTCCCAGCTCGCCC 1 chrV:311749-312298 ( 51) GAGGTCATCGGTTCGATTCCGGTTGCGTCC 1 chrXII:167553-168315 ( 61) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrIV:437553-438116 ( 39) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrII:226997-227347 ( 4) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrXVI:744053-744607 ( 45) AAGGTCGTTAGTTCAATTCTGACAGGTGGC 1 chrXV:339784-340794 ( 61) AAGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrV:492203-492549 ( 27) AAGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrIII:227797-228199 ( 64) GCCCGCGCTGGTTCAAATCCTGCTGGTGTC 1 chrIII:295320-295816 ( 8) GAGATCATCGGTTCAAATCCGATTGGAAGC 1 chrX:374174-374803 ( 69) AAGATTATGGGTTCGACCCCCATCGTGAGT 1 chrIV:568565-569341 ( 20) AAGATTATGGGTTCGACCCCCATCGTGAGT 1 chrXIV:374732-375092 ( 67) GAGGTCCTGTGTTCGATCCACAGAGTTCGC 1 chrVI:190996-191994 ( 69) ACCTGCGCAGGTTCGAATCCTGTCTGTGAC 1 chrVII:287068-287616 ( 59) AGGGTTGCAGGTTCAATTCCTGTCCGTTTC 1 chrII:642855-643249 ( 6) TTGGTCCTTAGTTCGATCCTGAGTGCGAGC 1 chrVII:115368-115703 ( 68) AATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrXVI:559952-560513 ( 17) GAGGTCCTGTGTTCGATCCACAGAATTCGC 1 chrVIII:62395-63257 ( 20) TGAAACCCTGGTTCGATTCTAGGAGATGGC 1 chrV:434375-434734 ( 38) TGAAACCCTGGTTCGATTCTAGGAGATGGC 1 chrXVI:856765-857081 ( 30) GGGAGCGCGCTACCGACTACGCCACACGCC 1 chrVII:774186-774536 ( 39) GGGAGCGCGCTACCGACTACGCCACACGCC 1 chrIV:410006-410798 ( 28) GGGAGCGCGCTACCGACTACGCCACACGCC 1 chrIV:1256847-1257271 ( 2) GGAAGCCGGGAATCGAACCCGGGCCCCATG 1 chrIV:802572-802993 ( 2) TCCTACCCGGATTCGAACCGGGGTTGTCCG 1 chrXVI:581709-582296 ( 48) TAGGTTCACCTTCCAAATATTCGTTAGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCSYGGGTTCGANYCYBVBHGRGRNC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40328 bayes= 11.6668 E= 2.7e-114 55 -1217 114 -126 101 -30 6 -384 -226 59 175 -384 74 -111 89 -284 -126 -152 6 96 -1217 214 -1217 -85 -104 114 121 -1217 -284 142 -11 -15 -104 35 142 -152 -39 -11 154 -284 -284 -1217 221 -185 -185 -1217 -1217 155 -1217 -111 -1217 155 -1217 242 -1217 -1217 -26 -1217 198 -1217 168 -1217 -1217 -1217 -26 48 -11 -4 -1217 114 -1217 91 -185 229 -1217 -1217 -284 159 -78 -15 -284 106 98 -68 -26 48 135 -1217 -1217 98 114 -52 6 106 -1217 -15 -226 35 142 -68 -15 -78 121 -85 -152 -111 154 -26 24 -78 135 -284 -85 21 70 -4 -185 198 -52 -284 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCSYGGGTTCGANYCYBVBHGRGRNC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 46 E= 2.7e-114 0.456522 0.000000 0.413043 0.130435 0.630435 0.152174 0.195652 0.021739 0.065217 0.282609 0.630435 0.021739 0.521739 0.086957 0.347826 0.043478 0.130435 0.065217 0.195652 0.608696 0.000000 0.826087 0.000000 0.173913 0.152174 0.413043 0.434783 0.000000 0.043478 0.500000 0.173913 0.282609 0.152174 0.239130 0.500000 0.108696 0.239130 0.173913 0.543478 0.043478 0.043478 0.000000 0.869565 0.086957 0.086957 0.000000 0.000000 0.913043 0.000000 0.086957 0.000000 0.913043 0.000000 1.000000 0.000000 0.000000 0.260870 0.000000 0.739130 0.000000 1.000000 0.000000 0.000000 0.000000 0.260870 0.260870 0.173913 0.304348 0.000000 0.413043 0.000000 0.586957 0.086957 0.913043 0.000000 0.000000 0.043478 0.565217 0.108696 0.282609 0.043478 0.391304 0.369565 0.195652 0.260870 0.260870 0.478261 0.000000 0.000000 0.369565 0.413043 0.217391 0.326087 0.391304 0.000000 0.282609 0.065217 0.239130 0.500000 0.195652 0.282609 0.108696 0.434783 0.173913 0.108696 0.086957 0.543478 0.260870 0.369565 0.108696 0.478261 0.043478 0.173913 0.217391 0.304348 0.304348 0.086957 0.739130 0.130435 0.043478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCSYGGGTTCGANYCYBVBHGRGRNC MEME-1 regular expression -------------------------------------------------------------------------------- [AG]A[GC][AG]TC[GC][CT][GC][GA]GTTC[GA]A[TAC][TC]C[CT][CG][GAC][GCT][CAT][GC][GA][GT][GA][GTC]C -------------------------------------------------------------------------------- Time 333.20 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCCSAGTKGKTWAAGSSRYMGRCTTRA MEME-2 width = 29 sites = 17 llr = 386 E-value = 6.1e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCSAGTKGKTWAAGSSRYMGRCTTRA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:::1a::::::486:1:514142:159 pos.-specific C :::884::12::11:::46246116211: probability G :8a::4:a:4a62:22a54311652:23: matrix T a::222::94:475:2:::15:2118621 bits 2.4 * * * * 2.2 * * * * 1.9 * * * * 1.7 * * ** * * Relative 1.4 ***** *** * * * Entropy 1.2 ***** *** ** *** * * (32.8 bits) 1.0 ***** *** ** * *** * * * 0.7 ***** ******* * *** ** ** * 0.5 ******************* ******* * 0.2 ***************************** 0.0 ----------------------------- Multilevel TGGCCCAGTGGGTTAAGGCATCGGCTTAA consensus A TTG T T AG CGGCATA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCSAGTKGKTWAAGSSRYMGRCTTRA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:689282-689828 + 67 1.33e-13 TTGGGCACTA TGGCCGAGTGGTTAAGGCGACAGACTTGA AATCT chrXIV:569736-570043 - 66 2.05e-13 GTCTCT TGGCCCAGTTGGTTAAGGCACCGTGCTAA TAACGCGGGG chrIX:183365-183669 - 11 2.05e-13 CCTGGTCTCT TGGCCCAGTTGGTTAAGGCACCGTGCTAA TAACGCGGGG chrX:617724-618101 + 64 1.64e-12 AATGGGAGTT TGGCCGAGTGGTTTAAGGCGTCAGATTTA GGTGGATT chrVII:700140-701203 + 61 4.08e-12 ATTGGTACTC TGGCCGAGTGGTCTAAGGCGTCAGGTCGA GGTCCTGATC chrXIII:586397-586937 - 57 6.27e-12 TATGGTTTCG TGGTCTAGTCGGTTATGGCATCTGCTTAA CACGCAGAAC chrX:378264-378559 + 6 6.27e-12 TTTCG TGGTCTAGTCGGTTATGGCATCTGCTTAA CACGCAGAAC chrVII:823367-823708 + 2 6.27e-12 G TGGTCTAGTCGGTTATGGCATCTGCTTAA CACGCAGAAC chrIII:227797-228199 + 1 8.56e-12 . TGGCCGAGTGGTTAAGGCGAGAGACTCGA ATGGAATAAA chrVII:422732-423562 + 2 4.62e-11 T TGGCCGAGCGGTCTAAGGCGCCTGATTCA AGAAATATCT chrXVI:559952-560513 - 72 5.96e-11 . TAGCTCAGTTGGGAGAGCGCCAGACTGAA GAAAAAACTT chrXIV:374732-375092 + 14 5.96e-11 TAAGCGGACT TAGCTCAGTTGGGAGAGCGCCAGACTGAA GAAAAACTTC chrVIII:358271-358791 - 53 5.96e-11 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCCAGACTGAA GAAAAAACTT chrIV:488500-489162 - 54 1.42e-10 TCCGGTCCAA TGGTCCAGTGGTTCAAGACGTCGCCTTTA CACGGCGAAG chrVII:115368-115703 + 10 2.20e-10 CATCCTTGT TAGCTCAGTTGGTAGAGCGTTCGGCTTTT AAGCGCATTT chrX:523644-524505 - 34 5.21e-10 AAAGGCAACT TGGCCGAGTGGTTAAGGCGAAAGATTAGA AATCTTTTGG chrXV:228144-228490 + 71 6.64e-10 TTAGACTCCA TGGCCAAGTTGGTTAAGGCGTGCGACTGT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCSAGTKGKTWAAGSSRYMGRCTTRA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:689282-689828 1.3e-13 66_[+2]_5 chrXIV:569736-570043 2.1e-13 65_[-2]_6 chrIX:183365-183669 2.1e-13 10_[-2]_61 chrX:617724-618101 1.6e-12 63_[+2]_8 chrVII:700140-701203 4.1e-12 60_[+2]_11 chrXIII:586397-586937 6.3e-12 56_[-2]_15 chrX:378264-378559 6.3e-12 5_[+2]_66 chrVII:823367-823708 6.3e-12 1_[+2]_70 chrIII:227797-228199 8.6e-12 [+2]_71 chrVII:422732-423562 4.6e-11 1_[+2]_70 chrXVI:559952-560513 6e-11 71_[-2] chrXIV:374732-375092 6e-11 13_[+2]_58 chrVIII:358271-358791 6e-11 52_[-2]_19 chrIV:488500-489162 1.4e-10 53_[-2]_18 chrVII:115368-115703 2.2e-10 9_[+2]_62 chrX:523644-524505 5.2e-10 33_[-2]_38 chrXV:228144-228490 6.6e-10 70_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCSAGTKGKTWAAGSSRYMGRCTTRA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCSAGTKGKTWAAGSSRYMGRCTTRA width=29 seqs=17 chrXVI:689282-689828 ( 67) TGGCCGAGTGGTTAAGGCGACAGACTTGA 1 chrXIV:569736-570043 ( 66) TGGCCCAGTTGGTTAAGGCACCGTGCTAA 1 chrIX:183365-183669 ( 11) TGGCCCAGTTGGTTAAGGCACCGTGCTAA 1 chrX:617724-618101 ( 64) TGGCCGAGTGGTTTAAGGCGTCAGATTTA 1 chrVII:700140-701203 ( 61) TGGCCGAGTGGTCTAAGGCGTCAGGTCGA 1 chrXIII:586397-586937 ( 57) TGGTCTAGTCGGTTATGGCATCTGCTTAA 1 chrX:378264-378559 ( 6) TGGTCTAGTCGGTTATGGCATCTGCTTAA 1 chrVII:823367-823708 ( 2) TGGTCTAGTCGGTTATGGCATCTGCTTAA 1 chrIII:227797-228199 ( 1) TGGCCGAGTGGTTAAGGCGAGAGACTCGA 1 chrVII:422732-423562 ( 2) TGGCCGAGCGGTCTAAGGCGCCTGATTCA 1 chrXVI:559952-560513 ( 72) TAGCTCAGTTGGGAGAGCGCCAGACTGAA 1 chrXIV:374732-375092 ( 14) TAGCTCAGTTGGGAGAGCGCCAGACTGAA 1 chrVIII:358271-358791 ( 53) TAGCTCAGTTGGGAGAGCGCCAGACTGAA 1 chrIV:488500-489162 ( 54) TGGTCCAGTGGTTCAAGACGTCGCCTTTA 1 chrVII:115368-115703 ( 10) TAGCTCAGTTGGTAGAGCGTTCGGCTTTT 1 chrX:523644-524505 ( 34) TGGCCGAGTGGTTAAGGCGAAAGATTAGA 1 chrXV:228144-228490 ( 71) TGGCCAAGTTGGTTAAGGCGTGCGACTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCSAGTKGKTWAAGSSRYMGRCTTRA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40896 bayes= 11.3012 E= 6.1e-042 -1073 -1073 -1073 168 -41 -1073 203 -1073 -1073 -1073 242 -1073 -1073 203 -1073 -41 -1073 203 -1073 -41 -241 114 91 -82 168 -1073 -1073 -1073 -1073 -1073 242 -1073 -1073 -167 -1073 159 -1073 -9 114 40 -1073 -1073 242 -1073 -1073 -1073 165 40 -1073 -67 -9 117 40 -167 -1073 76 129 -1073 33 -1073 105 -1073 -9 -82 -1073 -1073 242 -1073 -241 114 150 -1073 -1073 165 114 -1073 59 -9 65 -241 -241 114 -167 59 17 165 -167 -1073 -141 -167 165 -41 17 -167 133 -141 -82 165 -9 -241 -1073 -9 -1073 140 -241 -67 -9 105 59 -167 65 -82 150 -1073 -1073 -141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCSAGTKGKTWAAGSSRYMGRCTTRA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 17 E= 6.1e-042 0.000000 0.000000 0.000000 1.000000 0.235294 0.000000 0.764706 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.764706 0.000000 0.235294 0.000000 0.764706 0.000000 0.235294 0.058824 0.411765 0.352941 0.176471 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.000000 0.941176 0.000000 0.176471 0.411765 0.411765 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.588235 0.411765 0.000000 0.117647 0.176471 0.705882 0.411765 0.058824 0.000000 0.529412 0.764706 0.000000 0.235294 0.000000 0.647059 0.000000 0.176471 0.176471 0.000000 0.000000 1.000000 0.000000 0.058824 0.411765 0.529412 0.000000 0.000000 0.588235 0.411765 0.000000 0.470588 0.176471 0.294118 0.058824 0.058824 0.411765 0.058824 0.470588 0.352941 0.588235 0.058824 0.000000 0.117647 0.058824 0.588235 0.235294 0.352941 0.058824 0.470588 0.117647 0.176471 0.588235 0.176471 0.058824 0.000000 0.176471 0.000000 0.823529 0.058824 0.117647 0.176471 0.647059 0.470588 0.058824 0.294118 0.176471 0.882353 0.000000 0.000000 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCSAGTKGKTWAAGSSRYMGRCTTRA MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]G[CT][CT][CG]AGT[GT]G[GT]T[TA][AG]AG[GC][CG][AG][TC][CA][GT][GA]CTT[AG]A -------------------------------------------------------------------------------- Time 627.26 secs. ******************************************************************************** ******************************************************************************** MOTIF ADAAAAAAAHRAAAAAAARRA MEME-3 width = 21 sites = 71 llr = 778 E-value = 1.5e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif ADAAAAAAAHRAAAAAAARRA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 749777999458956687557 pos.-specific C 21::1:1::31:::21::2:: probability G 231313::114113232233: matrix T :3::1::1:2:1:2:::1:23 bits 2.4 2.2 1.9 1.7 Relative 1.4 * Entropy 1.2 * * * * (15.8 bits) 1.0 ** **** ** * 0.7 * ******* *** ** * 0.5 * ******* *********** 0.2 ********************* 0.0 --------------------- Multilevel AAAAAAAAAAAAAAAAAAAAA consensus G G G CG GGG GGT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADAAAAAAAHRAAAAAAARRA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXVI:351999-353080 + 9 5.15e-10 GCCTTCGA AAAAAAAAAAGAAAAAAAGAA AAGAAATACA chrXIV:88987-89713 - 19 6.62e-09 CACAGATGTG AGAAAAAAAAAAAAAAGAAAA TAAAGGAAAA chrX:538491-538771 - 55 8.36e-09 AATTTTTTCT ATAGAGAAACGAAAAAAAAAA AATAATCAAC chrXII:167553-168315 + 34 1.30e-08 TGCTTCAGAG AAAAAAAAAAGAAAAAGAAAA AATAACGACA chrX:390714-391282 + 38 4.16e-08 ACTAGCTACG AAAAAACAAAGAAAAAAAAAA CAAAATAGAG chrX:348837-350163 + 26 4.16e-08 GCGACGAAGT CGAAAAAAACGAAAGGAAATA AAATGCTGTC chrX:204568-205336 - 46 4.16e-08 GTAGATGAGC CAAAAAAAATAAAAAAAAGGA AGTTCTGCAG chrIV:322244-323600 + 5 6.98e-08 CCAG AAAGAGAAACGAAGAAGAAGA CGCCAAGAAC chrII:478993-479537 + 59 6.98e-08 ACTTGAAACA AAAAAAAAAAAAATGGAAAAA GCTGCTATCA chrVI:222392-223842 + 49 9.66e-08 AAGAAAATTA AAAGAAAAAAAAAAAGAAATA AAAAAAGAAA chrXVI:879655-880550 + 56 1.13e-07 AAATAATGAA GGAGAACAACAAAAAAAAGGA CCTGTATGAG chrXII:822212-823209 + 15 1.77e-07 CAGGTATAAC AGAAAGAAACAAGGAAAACAA TGCAATTAAT chrVIII:211694-212251 - 76 2.05e-07 CACA AGAAAAAAATGAGAGAAAAGA TAGATAAGGA chrXVI:572261-572877 + 80 3.11e-07 AATTCAGTAA AGAAAAAAAATAAGAAAAAGA chrXIII:352101-352727 - 20 4.62e-07 CATCACCAAA AGAGGAAAACGAATGAAAAGT AAAAAAAAAT chrIX:255026-257112 - 13 4.62e-07 GCAGATCATC CGAAGACAACAAAGAAAAGGA TGCATTACAT chrXII:448014-449569 - 17 5.94e-07 CTACTCAAAT ATGAAAAAAAGAAGAGAACGT CAACAATTTT chrXV:381883-384386 + 41 6.71e-07 CATCAGAATG CGAAAAAAAAAAAGCGAGAAT ATCTAAGCTC chrXII:92323-92639 - 10 7.58e-07 GTGTAAATGG ATAAAGAAACATATAAAAGGA GTACTAATC chrXI:574651-576454 - 60 7.58e-07 CTATACCACT GAAAAAAAAGAAAACGAACAA TACTAAGCTA chrII:380967-381282 - 63 7.58e-07 TAGAAAAAAC ATAAAAAAATGAAAAAACAAA GTGAGGTTGG chrXVI:214897-216404 + 79 9.60e-07 CGGAGGTGTA ATAAAAACAAGAAAAAAAAAA A chrVII:706913-707164 + 52 1.08e-06 GTAATGAGGC CCAAAAAAAAAAAAAGAACAT CTTCAAAAAA chrV:51782-53100 + 65 1.08e-06 AATGATAAAA ATGAAAAAACAAAAAAACGGA GGGTATAATC chrXI:333733-334932 + 25 1.35e-06 AAGTTGATGC AGAGAAAAAAGAGAGAGAGGT TACATATACA chrXV:109850-110677 - 3 1.51e-06 AAGTATACAG AGAAAAAAACCGATCAAAGAA AA chrXVI:821651-822231 - 18 1.68e-06 ACTCCCAAGT CAAAAACAACAAAAGAATGAA AGAAAAAAGA chrXIII:168692-169018 - 80 1.68e-06 . GGAGAAAAAGGGAAAAAAAAT ATCTCCCGGG chrVII:773140-773455 + 2 1.68e-06 A ATAAAAAAATGGATAGAGGAA GAAAGATTGA chrVI:226384-226892 + 20 1.68e-06 ATAAGAGCCG AGAAAAAAATATAGGAAAATA TAGGAAAATA chrVII:857113-857574 + 12 2.08e-06 CGTTCTAATG GAAAAAAAAAGAAATAAAGGT GGGCCTGCCC chrVII:648755-649399 + 58 2.55e-06 AGATCTTCGG ATAAAAATAAAAAGAAGGCGA TGAAAACAAA chrVI:210308-210916 + 19 2.55e-06 AGGTGTATTA ATGAAAAAATAAAGCCAAAAA AATTTCAGAA chrXII:88098-88524 - 26 3.12e-06 TATATATCTA CAAGAACAATGAAAGAAAAGT TAGGAACAGC chrIV:305440-307793 + 73 3.12e-06 TTCAAACGAA CAAAACAAACAAAAAAGGGGA AGTGGAA chrX:155657-157200 - 20 3.44e-06 CAATAACAAA AGAACAATAAAAAAAGAACAT ATATCAAGAG chrVI:190996-191994 + 33 3.44e-06 GGTTTATTAT AGAAGGATAAGAAGCAAAAAT TTAAAAAAGA chrVII:824461-825027 + 25 3.79e-06 AGCTGCTTTA GAAAAGAAGAGAAAGGAGCAA CTTGAAGGTT chrIII:81870-82621 + 74 3.79e-06 GTGTTTTGGA CAAATAAAAAAAAGGGAGGGA TAATCG chrVII:483411-483751 - 66 4.58e-06 ATCGCTGACG GGGAAAAAACAAAACAAGCTT CCTGAAACGG chrXIII:348046-349708 - 49 5.02e-06 AAGAGGAACG CAAGCAAAAGGAAAAAGAAGA GGCAGAGGAG chrVI:101689-102855 - 73 5.51e-06 TTTCTGC AAAGAGAAACGACGACAAGAA CGTCGTCGAA chrVIII:115412-116395 - 68 6.03e-06 CTTTTAACAG ATAAACAAGCAAAAGAAGGAA CTATCATACT chrXV:274545-275110 - 13 6.59e-06 AAAGGATTGT AGAAGGATAAGAAGCAAGAAT TCACAAAAAA chrXIII:504944-505446 + 15 6.59e-06 ATTGTTTTGA ACAGAAAAATAGAAGGAAGTA CTAAAATTAC chrXII:731998-732381 - 51 6.59e-06 TGTGACCTCA AGAGAAAAAGCAAAAAATAAT GAGAGCTAAG chrX:396440-396929 + 70 6.59e-06 TACAACGTAA GAGAAGAAATATAAAAAAGAA ATGCGCAAGC chrXIII:625858-626976 - 80 7.20e-06 . GAAAAAAAGAAGAAACAAAGA GATCCCGAAA chrXVI:98523-99174 + 59 7.85e-06 ACGGCGTTCT AGAAAAAAAAGAAAAATTCAA AAATTTCTGC chrXIV:738443-739992 - 60 9.31e-06 TTCTTGAGGG AAGGAAAAAGGAAAAAGGCTA CTCAGGCATC chrXII:64963-65940 + 61 9.31e-06 TCGCCCCTGA AAAAAGAAACGAAGTGGGGTA ACCACCGTGT chrXIV:102608-103251 + 78 1.10e-05 AAGTATATTC ACAAAAAAGAAAATAAAAGTT AA chrIII:161683-163302 + 14 1.10e-05 TTTAGATTTT CTAAAAATAAAAAAAAATCAT ACACTATTTT chrXV:842350-843245 + 31 1.19e-05 GTGTCAAAGG ATAAGGAAACAGAAAGGTAAA ATAGACCTTG chrXIV:715570-716645 - 18 1.19e-05 AACTAAATTG AAAGTAAAATCAAGGAAAAAA CAAGTGAGAT chrVI:180654-182042 + 41 1.29e-05 GCAAGTATTC AAAACAAAATAAGACGAGGGA GCTTCATAAA chrXV:226476-227010 + 76 1.40e-05 AAACAACCTT ATAACAAAACGAATAGAATGA GCAA chrIII:107110-107754 + 74 1.51e-05 TTTCCTGAGT ATAAGAAAAATAAGCAAAATA AGTATA chrXV:281781-282928 - 73 1.77e-05 TATCAGG ATATAAAAACGAAAAGGAATT CATAACTCAT chrVII:771782-772828 + 17 2.05e-05 GCGAAGTAAA GTGGCAAAACAAATGGAAGAT CTATTGCATT chrV:99741-100332 + 73 2.21e-05 TAAGCGACAT GGAGAGATAGAGATAGAAGAA TTTGTTA chrXI:457945-460020 - 39 2.55e-05 GATGTGGATG ACAATGAAATAAATACAAAGA AGTACCAAAC chrV:305885-306054 + 5 2.55e-05 TGCC AGAGAGATATATAAACAGAAA ACTCTATCGA chrIV:465179-466033 - 70 2.55e-05 ACTTCAACTT GAAAAACAAAAGATACAAATA CACTAGGTTC chrXIV:585489-586843 + 20 2.94e-05 TCTGAGTTTC AAAAAGAAACATGGACGAGAT TGCTTTTTTA chrXI:513269-513598 - 28 2.94e-05 ATAATTAAAA CTAAGACAAAAAATCCAACAA ATAACGTTCC chrVII:779494-779971 - 19 3.15e-05 GCAAGATATT AGGAGAAAAAGTATGAAAATT AAAAAAGTAA chrXIV:215986-217540 - 77 3.38e-05 TAG AGGAAGAAGAAAAGGCATGGT TGACAAGAGA chrXII:948362-950704 + 10 3.38e-05 CTCCTTGAG GAAAGGATATAAATGAAAATA CCGTTTTTCC chrXI:578769-579637 - 32 3.38e-05 AATTCATGAA ATAATGCAACCAAACAAGAAA AAATCTGGGG chrXI:431854-432488 + 68 3.87e-05 ACACATTGCG ATAGAGATACAAAAAAGTCTT TATTTCCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADAAAAAAAHRAAAAAAARRA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:351999-353080 5.2e-10 8_[+3]_71 chrXIV:88987-89713 6.6e-09 18_[-3]_61 chrX:538491-538771 8.4e-09 54_[-3]_25 chrXII:167553-168315 1.3e-08 33_[+3]_46 chrX:390714-391282 4.2e-08 37_[+3]_42 chrX:348837-350163 4.2e-08 25_[+3]_54 chrX:204568-205336 4.2e-08 45_[-3]_34 chrIV:322244-323600 7e-08 4_[+3]_75 chrII:478993-479537 7e-08 58_[+3]_21 chrVI:222392-223842 9.7e-08 48_[+3]_31 chrXVI:879655-880550 1.1e-07 55_[+3]_24 chrXII:822212-823209 1.8e-07 14_[+3]_65 chrVIII:211694-212251 2e-07 75_[-3]_4 chrXVI:572261-572877 3.1e-07 79_[+3] chrXIII:352101-352727 4.6e-07 19_[-3]_60 chrIX:255026-257112 4.6e-07 12_[-3]_67 chrXII:448014-449569 5.9e-07 16_[-3]_63 chrXV:381883-384386 6.7e-07 40_[+3]_39 chrXII:92323-92639 7.6e-07 9_[-3]_70 chrXI:574651-576454 7.6e-07 59_[-3]_20 chrII:380967-381282 7.6e-07 62_[-3]_17 chrXVI:214897-216404 9.6e-07 78_[+3]_1 chrVII:706913-707164 1.1e-06 51_[+3]_28 chrV:51782-53100 1.1e-06 64_[+3]_15 chrXI:333733-334932 1.3e-06 24_[+3]_55 chrXV:109850-110677 1.5e-06 2_[-3]_77 chrXVI:821651-822231 1.7e-06 17_[-3]_62 chrXIII:168692-169018 1.7e-06 79_[-3] chrVII:773140-773455 1.7e-06 1_[+3]_78 chrVI:226384-226892 1.7e-06 19_[+3]_60 chrVII:857113-857574 2.1e-06 11_[+3]_68 chrVII:648755-649399 2.6e-06 57_[+3]_22 chrVI:210308-210916 2.6e-06 18_[+3]_61 chrXII:88098-88524 3.1e-06 25_[-3]_54 chrIV:305440-307793 3.1e-06 72_[+3]_7 chrX:155657-157200 3.4e-06 19_[-3]_60 chrVI:190996-191994 3.4e-06 32_[+3]_47 chrVII:824461-825027 3.8e-06 24_[+3]_55 chrIII:81870-82621 3.8e-06 73_[+3]_6 chrVII:483411-483751 4.6e-06 65_[-3]_14 chrXIII:348046-349708 5e-06 48_[-3]_31 chrVI:101689-102855 5.5e-06 72_[-3]_7 chrVIII:115412-116395 6e-06 67_[-3]_12 chrXV:274545-275110 6.6e-06 12_[-3]_67 chrXIII:504944-505446 6.6e-06 14_[+3]_65 chrXII:731998-732381 6.6e-06 50_[-3]_29 chrX:396440-396929 6.6e-06 69_[+3]_10 chrXIII:625858-626976 7.2e-06 79_[-3] chrXVI:98523-99174 7.9e-06 58_[+3]_21 chrXIV:738443-739992 9.3e-06 59_[-3]_20 chrXII:64963-65940 9.3e-06 60_[+3]_19 chrXIV:102608-103251 1.1e-05 77_[+3]_2 chrIII:161683-163302 1.1e-05 13_[+3]_66 chrXV:842350-843245 1.2e-05 30_[+3]_49 chrXIV:715570-716645 1.2e-05 17_[-3]_62 chrVI:180654-182042 1.3e-05 40_[+3]_39 chrXV:226476-227010 1.4e-05 75_[+3]_4 chrIII:107110-107754 1.5e-05 73_[+3]_6 chrXV:281781-282928 1.8e-05 72_[-3]_7 chrVII:771782-772828 2.1e-05 16_[+3]_63 chrV:99741-100332 2.2e-05 72_[+3]_7 chrXI:457945-460020 2.6e-05 38_[-3]_41 chrV:305885-306054 2.6e-05 4_[+3]_75 chrIV:465179-466033 2.6e-05 69_[-3]_10 chrXIV:585489-586843 2.9e-05 19_[+3]_60 chrXI:513269-513598 2.9e-05 27_[-3]_52 chrVII:779494-779971 3.2e-05 18_[-3]_61 chrXIV:215986-217540 3.4e-05 76_[-3]_3 chrXII:948362-950704 3.4e-05 9_[+3]_70 chrXI:578769-579637 3.4e-05 31_[-3]_48 chrXI:431854-432488 3.9e-05 67_[+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADAAAAAAAHRAAAAAAARRA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ADAAAAAAAHRAAAAAAARRA width=21 seqs=71 chrXVI:351999-353080 ( 9) AAAAAAAAAAGAAAAAAAGAA 1 chrXIV:88987-89713 ( 19) AGAAAAAAAAAAAAAAGAAAA 1 chrX:538491-538771 ( 55) ATAGAGAAACGAAAAAAAAAA 1 chrXII:167553-168315 ( 34) AAAAAAAAAAGAAAAAGAAAA 1 chrX:390714-391282 ( 38) AAAAAACAAAGAAAAAAAAAA 1 chrX:348837-350163 ( 26) CGAAAAAAACGAAAGGAAATA 1 chrX:204568-205336 ( 46) CAAAAAAAATAAAAAAAAGGA 1 chrIV:322244-323600 ( 5) AAAGAGAAACGAAGAAGAAGA 1 chrII:478993-479537 ( 59) AAAAAAAAAAAAATGGAAAAA 1 chrVI:222392-223842 ( 49) AAAGAAAAAAAAAAAGAAATA 1 chrXVI:879655-880550 ( 56) GGAGAACAACAAAAAAAAGGA 1 chrXII:822212-823209 ( 15) AGAAAGAAACAAGGAAAACAA 1 chrVIII:211694-212251 ( 76) AGAAAAAAATGAGAGAAAAGA 1 chrXVI:572261-572877 ( 80) AGAAAAAAAATAAGAAAAAGA 1 chrXIII:352101-352727 ( 20) AGAGGAAAACGAATGAAAAGT 1 chrIX:255026-257112 ( 13) CGAAGACAACAAAGAAAAGGA 1 chrXII:448014-449569 ( 17) ATGAAAAAAAGAAGAGAACGT 1 chrXV:381883-384386 ( 41) CGAAAAAAAAAAAGCGAGAAT 1 chrXII:92323-92639 ( 10) ATAAAGAAACATATAAAAGGA 1 chrXI:574651-576454 ( 60) GAAAAAAAAGAAAACGAACAA 1 chrII:380967-381282 ( 63) ATAAAAAAATGAAAAAACAAA 1 chrXVI:214897-216404 ( 79) ATAAAAACAAGAAAAAAAAAA 1 chrVII:706913-707164 ( 52) CCAAAAAAAAAAAAAGAACAT 1 chrV:51782-53100 ( 65) ATGAAAAAACAAAAAAACGGA 1 chrXI:333733-334932 ( 25) AGAGAAAAAAGAGAGAGAGGT 1 chrXV:109850-110677 ( 3) AGAAAAAAACCGATCAAAGAA 1 chrXVI:821651-822231 ( 18) CAAAAACAACAAAAGAATGAA 1 chrXIII:168692-169018 ( 80) GGAGAAAAAGGGAAAAAAAAT 1 chrVII:773140-773455 ( 2) ATAAAAAAATGGATAGAGGAA 1 chrVI:226384-226892 ( 20) AGAAAAAAATATAGGAAAATA 1 chrVII:857113-857574 ( 12) GAAAAAAAAAGAAATAAAGGT 1 chrVII:648755-649399 ( 58) ATAAAAATAAAAAGAAGGCGA 1 chrVI:210308-210916 ( 19) ATGAAAAAATAAAGCCAAAAA 1 chrXII:88098-88524 ( 26) CAAGAACAATGAAAGAAAAGT 1 chrIV:305440-307793 ( 73) CAAAACAAACAAAAAAGGGGA 1 chrX:155657-157200 ( 20) AGAACAATAAAAAAAGAACAT 1 chrVI:190996-191994 ( 33) AGAAGGATAAGAAGCAAAAAT 1 chrVII:824461-825027 ( 25) GAAAAGAAGAGAAAGGAGCAA 1 chrIII:81870-82621 ( 74) CAAATAAAAAAAAGGGAGGGA 1 chrVII:483411-483751 ( 66) GGGAAAAAACAAAACAAGCTT 1 chrXIII:348046-349708 ( 49) CAAGCAAAAGGAAAAAGAAGA 1 chrVI:101689-102855 ( 73) AAAGAGAAACGACGACAAGAA 1 chrVIII:115412-116395 ( 68) ATAAACAAGCAAAAGAAGGAA 1 chrXV:274545-275110 ( 13) AGAAGGATAAGAAGCAAGAAT 1 chrXIII:504944-505446 ( 15) ACAGAAAAATAGAAGGAAGTA 1 chrXII:731998-732381 ( 51) AGAGAAAAAGCAAAAAATAAT 1 chrX:396440-396929 ( 70) GAGAAGAAATATAAAAAAGAA 1 chrXIII:625858-626976 ( 80) GAAAAAAAGAAGAAACAAAGA 1 chrXVI:98523-99174 ( 59) AGAAAAAAAAGAAAAATTCAA 1 chrXIV:738443-739992 ( 60) AAGGAAAAAGGAAAAAGGCTA 1 chrXII:64963-65940 ( 61) AAAAAGAAACGAAGTGGGGTA 1 chrXIV:102608-103251 ( 78) ACAAAAAAGAAAATAAAAGTT 1 chrIII:161683-163302 ( 14) CTAAAAATAAAAAAAAATCAT 1 chrXV:842350-843245 ( 31) ATAAGGAAACAGAAAGGTAAA 1 chrXIV:715570-716645 ( 18) AAAGTAAAATCAAGGAAAAAA 1 chrVI:180654-182042 ( 41) AAAACAAAATAAGACGAGGGA 1 chrXV:226476-227010 ( 76) ATAACAAAACGAATAGAATGA 1 chrIII:107110-107754 ( 74) ATAAGAAAAATAAGCAAAATA 1 chrXV:281781-282928 ( 73) ATATAAAAACGAAAAGGAATT 1 chrVII:771782-772828 ( 17) GTGGCAAAACAAATGGAAGAT 1 chrV:99741-100332 ( 73) GGAGAGATAGAGATAGAAGAA 1 chrXI:457945-460020 ( 39) ACAATGAAATAAATACAAAGA 1 chrV:305885-306054 ( 5) AGAGAGATATATAAACAGAAA 1 chrIV:465179-466033 ( 70) GAAAAACAAAAGATACAAATA 1 chrXIV:585489-586843 ( 20) AAAAAGAAACATGGACGAGAT 1 chrXI:513269-513598 ( 28) CTAAGACAAAAAATCCAACAA 1 chrVII:779494-779971 ( 19) AGGAGAAAAAGTATGAAAATT 1 chrXIV:215986-217540 ( 77) AGGAAGAAGAAAAGGCATGGT 1 chrXII:948362-950704 ( 10) GAAAGGATATAAATGAAAATA 1 chrXI:578769-579637 ( 32) ATAATGCAACCAAACAAGAAA 1 chrXI:431854-432488 ( 68) ATAGAGATACAAAAAAGTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADAAAAAAAHRAAAAAAARRA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45440 bayes= 10.1557 E= 1.5e-032 108 -15 -15 -1279 17 -173 79 -22 148 -1279 -56 -1279 123 -1279 44 -447 126 -141 -56 -247 117 -273 51 -1279 150 -73 -1279 -1279 146 -373 -1279 -130 157 -1279 -141 -1279 33 79 -115 -67 78 -173 102 -347 136 -1279 -73 -189 155 -373 -141 -1279 81 -1279 44 -67 88 -27 35 -347 95 -56 51 -1279 136 -1279 -3 -447 111 -273 7 -166 57 -3 85 -447 66 -1279 73 -67 117 -1279 -1279 -8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADAAAAAAAHRAAAAAAARRA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 71 E= 1.5e-032 0.661972 0.169014 0.169014 0.000000 0.352113 0.056338 0.323944 0.267606 0.873239 0.000000 0.126761 0.000000 0.732394 0.000000 0.253521 0.014085 0.746479 0.070423 0.126761 0.056338 0.704225 0.028169 0.267606 0.000000 0.887324 0.112676 0.000000 0.000000 0.859155 0.014085 0.000000 0.126761 0.929577 0.000000 0.070423 0.000000 0.394366 0.323944 0.084507 0.197183 0.535211 0.056338 0.380282 0.028169 0.802817 0.000000 0.112676 0.084507 0.915493 0.014085 0.070423 0.000000 0.549296 0.000000 0.253521 0.197183 0.577465 0.154930 0.239437 0.028169 0.605634 0.126761 0.267606 0.000000 0.802817 0.000000 0.183099 0.014085 0.676056 0.028169 0.197183 0.098592 0.464789 0.183099 0.338028 0.014085 0.492958 0.000000 0.309859 0.197183 0.704225 0.000000 0.000000 0.295775 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADAAAAAAAHRAAAAAAARRA MEME-3 regular expression -------------------------------------------------------------------------------- A[AGT]A[AG]A[AG]AAA[AC][AG]AA[AG][AG][AG]AA[AG][AG][AT] -------------------------------------------------------------------------------- Time 918.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:70273-70819 5.36e-01 100 chrI:71634-73699 2.04e-01 100 chrI:77952-79376 2.42e-01 100 chrI:138943-139362 9.76e-02 100 chrI:141226-143680 6.10e-01 100 chrI:166193-168217 6.16e-01 100 chrI:181167-181590 9.39e-01 100 chrI:182245-183147 1.18e-01 100 chrII:36243-36505 3.39e-01 100 chrII:37818-38639 4.51e-01 100 chrII:87553-88586 2.05e-01 100 chrII:168484-169761 8.37e-01 100 chrII:196811-197790 2.21e-01 100 chrII:226997-227347 1.77e-07 3_[+1(6.97e-10)]_67 chrII:233150-235965 9.28e-01 100 chrII:236528-237502 3.89e-01 100 chrII:256200-257147 8.82e-01 100 chrII:266252-267300 9.26e-01 100 chrII:326290-327151 4.87e-01 100 chrII:333367-334229 1.23e-01 21_[+2(8.00e-05)]_50 chrII:347446-348251 9.79e-01 100 chrII:350579-351132 2.92e-07 62_[+1(1.17e-10)]_8 chrII:380967-381282 5.99e-06 20_[-2(3.10e-05)]_13_[-3(7.58e-07)]_\ 17 chrII:405748-407174 4.21e-01 100 chrII:444617-445532 5.83e-01 100 chrII:477153-477784 8.72e-02 100 chrII:478993-479537 4.53e-04 58_[+3(6.98e-08)]_21 chrII:481244-482957 6.86e-01 100 chrII:578375-578958 4.95e-01 100 chrII:579245-581471 3.95e-01 100 chrII:604462-605908 1.33e-01 100 chrII:612224-614144 2.24e-01 100 chrII:625273-625464 5.17e-01 100 chrII:642855-643249 3.49e-04 5_[-1(4.40e-08)]_65 chrII:645011-645910 8.36e-01 100 chrII:680398-681928 1.76e-01 100 chrII:740036-740669 9.99e-01 100 chrII:740847-741142 3.51e-01 100 chrII:741559-742003 2.73e-01 100 chrIII:851-1051 7.43e-01 100 chrIII:29568-31188 9.36e-01 100 chrIII:81870-82621 2.82e-03 73_[+3(3.79e-06)]_6 chrIII:107110-107754 1.87e-02 73_[+3(1.51e-05)]_6 chrIII:123201-123745 2.63e-01 100 chrIII:127559-127830 4.91e-02 64_[-2(8.18e-05)]_7 chrIII:137804-140570 1.65e-01 100 chrIII:141947-142975 2.68e-03 29_[-2(6.25e-05)]_42 chrIII:150937-151487 8.19e-01 100 chrIII:161683-163302 1.84e-02 13_[+3(1.10e-05)]_66 chrIII:167892-168499 3.47e-01 100 chrIII:176751-178273 1.04e-01 100 chrIII:227797-228199 8.52e-14 [+2(8.56e-12)]_34_[+1(1.50e-09)]_7 chrIII:295320-295816 2.69e-05 7_[+1(1.67e-09)]_63 chrIII:308096-309263 8.74e-01 100 chrIV:45238-46154 3.88e-02 16_[-2(3.79e-05)]_55 chrIV:83333-84185 2.69e-01 100 chrIV:129115-130888 1.21e-01 100 chrIV:132466-133641 4.87e-01 100 chrIV:200574-202277 7.99e-02 100 chrIV:305440-307793 9.13e-03 72_[+3(3.12e-06)]_7 chrIV:322244-323600 9.77e-06 4_[+3(6.98e-08)]_75 chrIV:331215-333426 7.59e-01 100 chrIV:354899-356998 4.71e-01 100 chrIV:357852-358186 8.69e-01 100 chrIV:359075-359737 9.62e-01 100 chrIV:410006-410798 1.56e-05 27_[-1(2.53e-07)]_9_[-1(7.78e-07)]_\ 4 chrIV:416352-417401 7.86e-01 100 chrIV:427670-428706 9.47e-01 100 chrIV:433720-434392 7.25e-01 100 chrIV:437553-438116 4.65e-07 38_[+1(6.97e-10)]_32 chrIV:465179-466033 7.72e-02 69_[-3(2.55e-05)]_10 chrIV:488500-489162 6.19e-15 16_[-1(5.49e-12)]_7_[-2(1.42e-10)]_\ 18 chrIV:491494-492720 9.94e-01 100 chrIV:520682-521099 8.61e-01 100 chrIV:540279-541925 6.11e-01 100 chrIV:568565-569341 6.31e-06 19_[+1(5.63e-09)]_51 chrIV:569602-569827 3.35e-01 100 chrIV:579347-580788 5.57e-01 100 chrIV:601349-602721 4.11e-01 100 chrIV:619437-620161 4.16e-01 100 chrIV:629010-629672 6.99e-01 100 chrIV:639208-639769 3.04e-01 100 chrIV:644116-645340 1.48e-01 100 chrIV:667647-668190 2.08e-01 100 chrIV:720169-721148 7.64e-01 100 chrIV:764887-765532 1.85e-01 100 chrIV:802572-802993 7.62e-04 1_[+1(1.34e-06)]_69 chrIV:805651-806484 4.09e-01 100 chrIV:808602-810370 1.30e-01 100 chrIV:884280-884693 4.83e-07 26_[+1(2.17e-10)]_44 chrIV:892052-892753 6.77e-01 100 chrIV:915050-916212 3.27e-01 100 chrIV:929249-930341 5.11e-01 100 chrIV:946184-946601 3.20e-07 27_[+1(1.79e-11)]_43 chrIV:974154-975111 3.22e-01 100 chrIV:976242-977293 2.75e-01 100 chrIV:979595-980053 7.04e-01 100 chrIV:980277-981129 7.04e-01 100 chrIV:992755-992983 1.77e-08 19_[+2(3.79e-05)]_4_[+1(1.32e-10)]_\ 18 chrIV:1016926-1017942 8.33e-01 100 chrIV:1060094-1061318 4.40e-01 100 chrIV:1075107-1075754 5.49e-01 100 chrIV:1075926-1076118 1.68e-01 100 chrIV:1094677-1095648 8.56e-01 100 chrIV:1150749-1151180 2.59e-01 100 chrIV:1156710-1157284 6.38e-01 100 chrIV:1163662-1164786 7.22e-02 69_[-2(5.97e-05)]_2 chrIV:1175765-1178175 1.47e-01 100 chrIV:1200880-1203122 8.63e-01 100 chrIV:1232290-1235122 5.02e-02 100 chrIV:1236498-1238894 6.97e-01 100 chrIV:1245695-1246105 5.91e-01 100 chrIV:1256847-1257271 2.55e-04 1_[+1(4.66e-07)]_69 chrIV:1269909-1270815 4.75e-01 100 chrIV:1301744-1302587 2.18e-01 100 chrIV:1305400-1305670 2.93e-01 100 chrIV:1351815-1352646 4.82e-02 100 chrIV:1353709-1355556 9.22e-01 100 chrIV:1364278-1364511 7.52e-02 4_[+1(8.36e-05)]_66 chrIV:1402182-1403515 4.80e-02 100 chrIV:1466162-1467144 9.37e-01 100 chrIV:1502191-1502838 7.76e-01 100 chrIX:141156-141734 4.71e-02 56_[+3(6.84e-05)]_23 chrIX:183365-183669 3.22e-09 10_[-2(2.05e-13)]_61 chrIX:190940-193059 3.99e-01 100 chrIX:197295-197656 2.19e-01 100 chrIX:212588-214455 5.72e-01 100 chrIX:248689-248931 6.85e-01 100 chrIX:255026-257112 1.12e-03 12_[-3(4.62e-07)]_67 chrIX:315490-316501 1.18e-01 100 chrIX:316752-318295 3.87e-01 100 chrIX:322393-323365 3.90e-01 100 chrIX:325757-326119 6.38e-01 100 chrIX:335935-336639 3.47e-01 100 chrIX:370118-370581 7.49e-01 100 chrIX:370780-370962 5.92e-01 100 chrIX:386214-386412 7.36e-01 100 chrIX:386685-387099 6.44e-01 100 chrIX:391415-392145 1.72e-01 100 chrV:51782-53100 8.13e-03 7_[+3(3.44e-06)]_11_[+3(4.17e-06)]_\ 4_[+3(1.08e-06)]_15 chrV:61044-62157 5.28e-01 100 chrV:66951-69997 4.69e-01 100 chrV:77632-79497 8.98e-01 100 chrV:85155-86972 9.66e-01 100 chrV:99741-100332 3.30e-02 72_[+3(2.21e-05)]_7 chrV:122120-122881 1.48e-01 100 chrV:130787-131419 2.03e-08 29_[-1(1.92e-10)]_41 chrV:135311-136209 8.72e-01 100 chrV:138184-138354 1.98e-01 100 chrV:138517-140447 1.83e-01 100 chrV:167070-167639 4.32e-01 100 chrV:176924-177573 1.33e-01 100 chrV:235051-237156 3.82e-01 100 chrV:249246-249466 2.99e-01 100 chrV:249823-251140 8.68e-01 100 chrV:268972-269796 9.96e-01 100 chrV:282151-283393 8.19e-01 100 chrV:288170-288945 6.13e-01 100 chrV:305885-306054 3.30e-02 4_[+3(2.55e-05)]_75 chrV:306321-306901 4.82e-01 100 chrV:307085-307878 6.45e-01 100 chrV:311749-312298 2.67e-06 50_[-1(4.42e-10)]_20 chrV:322085-323592 7.65e-01 100 chrV:354670-355184 9.00e-01 100 chrV:362745-363296 6.88e-01 100 chrV:363663-364535 6.33e-01 100 chrV:423583-425431 3.79e-01 100 chrV:431042-431941 9.78e-01 100 chrV:434375-434734 2.12e-05 37_[-1(7.72e-08)]_33 chrV:435515-435982 2.07e-07 54_[-1(1.17e-10)]_16 chrV:441879-442802 4.61e-01 100 chrV:469264-470307 6.34e-01 100 chrV:492203-492549 1.69e-07 26_[-1(8.72e-10)]_6_[-2(7.16e-05)]_\ 9 chrV:550864-552094 5.16e-01 100 chrVI:63988-65217 5.07e-01 100 chrVI:82500-84618 6.98e-01 100 chrVI:84863-85179 1.90e-01 100 chrVI:100962-101459 3.91e-01 100 chrVI:101689-102855 6.87e-03 72_[-3(5.51e-06)]_7 chrVI:105949-106521 4.28e-01 100 chrVI:137259-137674 5.69e-09 70_[-1(2.37e-11)] chrVI:157907-158437 9.14e-01 100 chrVI:158766-159006 2.35e-01 100 chrVI:162101-162328 5.45e-03 70_[+2(3.79e-05)]_1 chrVI:167283-167782 1.24e-07 12_[+1(1.79e-11)]_58 chrVI:180654-182042 3.87e-02 40_[+3(1.29e-05)]_39 chrVI:190996-191994 1.05e-07 32_[+3(3.44e-06)]_15_[-1(9.06e-09)]_\ 2 chrVI:210308-210916 9.26e-11 18_[+3(2.55e-06)]_18_[-1(1.79e-11)]_\ 13 chrVI:222392-223842 6.88e-04 50_[+3(6.98e-08)]_29 chrVI:225075-225420 8.26e-01 100 chrVI:226384-226892 9.92e-03 19_[+3(1.68e-06)]_60 chrVII:110388-110754 3.23e-01 100 chrVII:115368-115703 1.18e-10 9_[+2(2.20e-10)]_29_[+1(6.09e-08)]_\ 3 chrVII:121856-122347 9.51e-01 100 chrVII:148050-148844 9.02e-01 100 chrVII:205316-206277 2.63e-01 100 chrVII:254171-254724 8.39e-02 100 chrVII:255179-255756 3.54e-02 100 chrVII:287068-287616 7.25e-05 58_[-1(1.87e-08)]_12 chrVII:310623-312833 1.72e-01 100 chrVII:315900-317846 5.69e-01 100 chrVII:319230-320127 3.32e-02 100 chrVII:323395-324072 5.85e-01 100 chrVII:328392-329590 9.07e-01 100 chrVII:345905-346921 7.54e-01 100 chrVII:364904-366028 5.38e-01 100 chrVII:366218-366703 5.02e-01 100 chrVII:405487-406103 2.42e-01 100 chrVII:411943-412574 3.18e-01 100 chrVII:422732-423562 4.01e-07 1_[+2(4.62e-11)]_70 chrVII:436715-437000 8.39e-01 100 chrVII:437162-438341 7.19e-01 100 chrVII:439009-440067 4.65e-01 100 chrVII:440487-443165 2.45e-01 100 chrVII:478973-482866 3.86e-01 100 chrVII:483411-483751 9.12e-03 65_[-3(4.58e-06)]_14 chrVII:531212-532520 8.44e-03 63_[-2(2.87e-05)]_8 chrVII:532961-535132 2.21e-01 100 chrVII:541742-542185 9.61e-01 100 chrVII:543571-546024 9.25e-01 100 chrVII:555759-557575 4.21e-01 100 chrVII:576923-577566 3.90e-01 100 chrVII:609321-610032 9.69e-01 100 chrVII:648064-648479 7.69e-01 100 chrVII:648755-649399 5.91e-03 57_[+3(2.55e-06)]_22 chrVII:661514-661859 8.55e-01 100 chrVII:700140-701203 1.44e-09 60_[+2(4.08e-12)]_11 chrVII:706913-707164 6.37e-03 51_[+3(1.08e-06)]_28 chrVII:726970-728939 6.46e-01 100 chrVII:730987-731416 6.90e-08 28_[+1(2.37e-11)]_42 chrVII:736209-736806 4.54e-01 100 chrVII:771782-772828 1.83e-02 16_[+3(2.05e-05)]_63 chrVII:773140-773455 1.07e-02 1_[+3(1.68e-06)]_78 chrVII:774186-774536 6.51e-07 38_[-1(2.53e-07)]_32 chrVII:779494-779971 4.20e-02 18_[-3(3.15e-05)]_61 chrVII:784794-785364 1.00e+00 100 chrVII:806201-807775 6.82e-02 100 chrVII:823367-823708 9.71e-15 1_[+2(6.27e-12)]_7_[+1(1.03e-10)]_\ 33 chrVII:824461-825027 8.03e-04 24_[+3(3.79e-06)]_55 chrVII:828335-828926 9.62e-02 100 chrVII:845132-846369 3.83e-01 100 chrVII:857113-857574 1.30e-02 11_[+3(2.08e-06)]_68 chrVII:875591-875776 9.29e-01 100 chrVII:875981-877142 9.74e-01 100 chrVII:877455-879055 6.93e-01 100 chrVII:882437-884094 2.18e-01 100 chrVII:913162-914093 2.66e-01 100 chrVII:914803-915878 2.26e-01 100 chrVII:929287-931171 1.79e-01 100 chrVII:938929-939714 7.03e-01 100 chrVII:958781-959030 2.90e-01 100 chrVII:959905-961601 2.18e-01 100 chrVII:1003957-1004430 3.92e-02 100 chrVIII:34370-36115 1.68e-01 100 chrVIII:62395-63257 1.44e-05 19_[+1(7.72e-08)]_16_[-3(8.16e-05)]_\ 14 chrVIII:74785-76531 2.85e-01 100 chrVIII:104233-105524 3.44e-01 100 chrVIII:115412-116395 1.61e-02 67_[-3(6.03e-06)]_12 chrVIII:119661-121847 5.78e-01 100 chrVIII:122288-122610 6.48e-01 100 chrVIII:126513-127910 8.24e-02 100 chrVIII:134116-135055 7.02e-01 100 chrVIII:145444-146449 1.22e-01 100 chrVIII:147589-148690 6.82e-01 100 chrVIII:211694-212251 1.34e-03 75_[-3(2.05e-07)]_4 chrVIII:237766-238518 8.48e-01 100 chrVIII:358271-358791 9.92e-07 52_[-2(5.96e-11)]_19 chrVIII:375341-376207 4.85e-01 100 chrVIII:381403-382461 4.53e-01 100 chrVIII:388332-388985 3.66e-01 100 chrVIII:411016-411648 8.31e-01 100 chrVIII:451317-453109 2.12e-01 100 chrVIII:466602-468059 7.19e-01 100 chrVIII:475020-475884 7.00e-01 100 chrVIII:509692-511614 8.93e-02 100 chrVIII:555786-556336 4.86e-01 100 chrX:59100-59370 3.11e-01 100 chrX:73512-75576 2.20e-01 100 chrX:121106-122003 3.59e-01 100 chrX:139198-140418 8.85e-02 100 chrX:155657-157200 1.81e-02 19_[-3(3.44e-06)]_60 chrX:172730-173074 8.36e-01 100 chrX:204568-205336 6.23e-06 3_[+1(8.93e-05)]_12_[-3(4.16e-08)]_\ 34 chrX:213907-216916 3.20e-01 100 chrX:227716-228791 2.16e-02 70_[+2(5.57e-05)]_1 chrX:233076-233445 7.65e-01 100 chrX:233645-234647 1.86e-01 100 chrX:236116-237416 6.83e-01 100 chrX:348322-348581 9.97e-01 100 chrX:348837-350163 3.97e-04 25_[+3(4.16e-08)]_54 chrX:355204-355747 8.25e-02 100 chrX:374174-374803 6.31e-06 68_[-1(5.63e-09)]_2 chrX:378264-378559 9.63e-16 5_[+2(6.27e-12)]_7_[+1(1.03e-10)]_\ 29 chrX:390714-391282 3.65e-04 37_[+3(4.16e-08)]_42 chrX:396440-396929 2.31e-02 69_[+3(6.59e-06)]_10 chrX:415403-416240 5.05e-01 100 chrX:422771-423335 4.32e-01 100 chrX:424374-424711 1.27e-02 1_[+2(2.95e-05)]_70 chrX:450971-452389 2.08e-01 100 chrX:511484-512240 2.66e-01 100 chrX:517221-518064 8.37e-01 100 chrX:520542-522035 5.28e-01 100 chrX:523644-524505 5.98e-06 33_[-2(5.21e-10)]_38 chrX:531478-532451 4.82e-01 100 chrX:538491-538771 6.47e-12 14_[+1(6.98e-11)]_10_[-3(8.36e-09)]_\ 25 chrX:538930-539215 5.14e-01 100 chrX:540718-542593 4.61e-01 100 chrX:542799-543260 6.13e-02 100 chrX:608349-609056 8.12e-01 100 chrX:617724-618101 1.32e-08 63_[+2(1.64e-12)]_8 chrX:622499-623261 4.54e-01 100 chrX:651887-653312 2.94e-02 100 chrX:663371-664323 2.97e-01 100 chrX:703381-703799 3.11e-01 100 chrX:745159-745550 6.73e-01 100 chrXI:799-1072 7.56e-01 100 chrXI:46728-46999 9.82e-01 100 chrXI:74424-75225 4.01e-01 100 chrXI:100213-102321 9.83e-01 100 chrXI:102480-103958 1.91e-01 100 chrXI:140809-141508 7.58e-01 100 chrXI:144077-144315 5.03e-01 100 chrXI:162084-162764 9.64e-01 100 chrXI:208161-209246 3.04e-01 100 chrXI:282577-284877 5.42e-01 100 chrXI:302518-303210 6.42e-01 100 chrXI:307899-308672 7.51e-01 100 chrXI:312434-313603 8.44e-01 100 chrXI:325552-327590 2.37e-01 100 chrXI:333733-334932 4.03e-03 24_[+3(1.35e-06)]_55 chrXI:364413-365171 6.32e-02 100 chrXI:431854-432488 1.08e-01 67_[+3(3.87e-05)]_12 chrXI:457945-460020 6.90e-02 38_[-3(2.55e-05)]_41 chrXI:490803-491343 3.14e-01 100 chrXI:513269-513598 1.84e-02 27_[-3(2.94e-05)]_52 chrXI:517798-518040 2.16e-01 100 chrXI:518863-519197 4.83e-01 100 chrXI:519861-521043 1.05e-01 100 chrXI:533305-534335 8.46e-01 100 chrXI:558316-559649 6.92e-02 100 chrXI:560673-561173 3.48e-01 100 chrXI:574651-576454 4.59e-03 59_[-3(7.58e-07)]_20 chrXI:578769-579637 4.32e-02 31_[-3(3.38e-05)]_48 chrXI:617662-618784 8.29e-01 100 chrXII:37019-37392 5.12e-01 100 chrXII:39421-40428 9.70e-01 100 chrXII:64963-65940 8.62e-03 60_[+3(9.31e-06)]_19 chrXII:66141-66323 5.59e-01 100 chrXII:88098-88524 4.68e-03 25_[-3(3.12e-06)]_54 chrXII:92323-92639 2.77e-03 9_[-3(7.58e-07)]_70 chrXII:97175-97895 4.05e-01 100 chrXII:108606-108861 8.37e-01 100 chrXII:151071-152616 5.24e-01 100 chrXII:167553-168315 4.62e-11 33_[+3(1.30e-08)]_6_[-1(6.97e-10)]_\ 10 chrXII:198306-199702 6.08e-01 100 chrXII:201332-202651 4.64e-01 100 chrXII:214404-215049 4.79e-01 100 chrXII:231949-234228 6.65e-01 100 chrXII:242190-243490 5.20e-01 100 chrXII:282575-285180 2.00e-01 100 chrXII:347931-348683 2.93e-01 100 chrXII:358076-359323 2.91e-01 100 chrXII:360298-361389 8.86e-01 100 chrXII:366056-367395 2.12e-01 100 chrXII:367657-370321 1.86e-01 100 chrXII:374200-374890 2.46e-01 100 chrXII:426837-427442 2.31e-01 100 chrXII:448014-449569 1.30e-03 16_[-3(5.94e-07)]_63 chrXII:459662-460684 4.69e-01 100 chrXII:498857-500260 7.70e-01 100 chrXII:568073-568921 5.66e-01 100 chrXII:592350-592956 3.45e-01 100 chrXII:604275-605566 4.19e-01 100 chrXII:628005-629024 1.41e-01 2_[+1(9.53e-05)]_68 chrXII:636689-640463 8.75e-01 100 chrXII:645270-645614 8.93e-01 100 chrXII:664287-665409 5.79e-01 100 chrXII:673502-674020 1.77e-01 100 chrXII:712382-712728 8.94e-01 100 chrXII:731998-732381 3.65e-04 20_[+1(3.52e-05)]_[-3(6.59e-06)]_29 chrXII:734656-734916 9.24e-03 58_[-2(1.02e-05)]_13 chrXII:780488-781386 6.32e-01 100 chrXII:783926-784453 8.08e-01 100 chrXII:793817-796363 6.00e-01 100 chrXII:797014-797342 7.09e-01 100 chrXII:799697-800160 1.34e-01 100 chrXII:805839-806841 2.96e-01 100 chrXII:819297-820765 7.93e-01 100 chrXII:822212-823209 1.57e-03 14_[+3(1.77e-07)]_65 chrXII:837660-839405 9.96e-01 100 chrXII:855509-856278 6.80e-01 100 chrXII:856438-857759 7.39e-01 100 chrXII:875253-875905 6.47e-01 100 chrXII:898112-899696 4.20e-01 100 chrXII:899879-900396 6.07e-01 100 chrXII:948362-950704 2.35e-02 9_[+3(3.38e-05)]_70 chrXII:951055-953761 3.49e-01 100 chrXII:975760-976139 8.09e-01 100 chrXII:1017553-1018904 3.59e-02 100 chrXIII:13217-14333 3.35e-01 100 chrXIII:18998-21368 1.19e-01 100 chrXIII:91848-92069 1.22e-01 100 chrXIII:116864-119016 1.74e-01 100 chrXIII:123079-124185 1.37e-01 100 chrXIII:131498-132037 4.08e-01 100 chrXIII:146485-147450 7.58e-01 100 chrXIII:159401-160388 2.33e-01 100 chrXIII:161731-162635 9.67e-01 100 chrXIII:162952-164350 5.07e-01 100 chrXIII:168692-169018 6.27e-11 47_[+1(1.79e-11)]_2_[-3(1.68e-06)] chrXIII:195952-196269 2.18e-06 8_[-1(4.42e-10)]_62 chrXIII:219307-220752 1.60e-01 100 chrXIII:222285-223840 5.87e-01 100 chrXIII:253345-253681 5.55e-02 100 chrXIII:259049-259606 5.69e-01 100 chrXIII:290461-291558 8.54e-01 100 chrXIII:296591-298850 5.55e-01 100 chrXIII:320896-321281 9.97e-01 100 chrXIII:347363-347859 3.70e-01 100 chrXIII:348046-349708 3.19e-03 48_[-3(5.02e-06)]_31 chrXIII:352101-352727 5.85e-04 19_[-3(4.62e-07)]_60 chrXIII:362973-363979 5.14e-01 100 chrXIII:372180-372633 2.24e-01 100 chrXIII:378811-379052 4.18e-01 100 chrXIII:379246-379705 6.63e-01 100 chrXIII:420301-420816 5.04e-01 100 chrXIII:434009-434279 4.84e-01 100 chrXIII:480377-480797 8.75e-01 100 chrXIII:498697-500691 5.15e-02 32_[+3(5.35e-05)]_47 chrXIII:504944-505446 5.23e-04 14_[+3(6.59e-06)]_65 chrXIII:507179-509106 5.73e-01 100 chrXIII:549831-551197 4.64e-01 100 chrXIII:551921-553153 9.41e-02 100 chrXIII:572695-573127 5.12e-10 22_[-1(7.95e-11)]_6_[-2(9.89e-07)]_\ 13 chrXIII:586397-586937 6.89e-15 19_[-1(1.03e-10)]_7_[-2(6.27e-12)]_\ 15 chrXIII:603831-604634 6.86e-01 100 chrXIII:625858-626976 3.03e-02 79_[-3(7.20e-06)] chrXIII:631501-635089 3.39e-01 100 chrXIII:747681-748525 9.09e-01 100 chrXIII:753007-754225 7.65e-01 100 chrXIII:760447-763147 1.74e-01 100 chrXIII:807979-808561 2.61e-08 26_[-1(1.00e-11)]_44 chrXIII:837749-838334 1.77e-01 100 chrXIII:887007-889713 4.68e-01 100 chrXIV:24046-25046 5.79e-01 100 chrXIV:25264-27629 6.00e-01 100 chrXIV:63265-64527 6.25e-01 100 chrXIV:88987-89713 1.13e-04 18_[-3(6.62e-09)]_61 chrXIV:95672-96432 5.05e-01 100 chrXIV:102608-103251 3.35e-02 77_[+3(1.10e-05)]_2 chrXIV:104581-105381 9.96e-01 100 chrXIV:173795-174666 3.70e-02 19_[+2(9.32e-05)]_52 chrXIV:215986-217540 1.29e-02 76_[-3(3.38e-05)]_3 chrXIV:229615-230824 7.53e-01 100 chrXIV:253272-253926 3.76e-01 100 chrXIV:302658-303697 7.25e-01 100 chrXIV:352102-353033 5.91e-01 100 chrXIV:374732-375092 5.68e-12 13_[+2(5.96e-11)]_24_[+1(9.06e-09)]_\ 4 chrXIV:391930-392768 3.59e-01 100 chrXIV:395967-397622 4.90e-01 100 chrXIV:403178-404076 2.25e-01 100 chrXIV:413539-416147 7.94e-01 100 chrXIV:442810-444354 9.27e-02 33_[+2(9.72e-05)]_38 chrXIV:480812-481230 1.53e-01 100 chrXIV:493438-495063 6.80e-01 100 chrXIV:498773-500743 1.86e-01 100 chrXIV:505591-507730 3.07e-01 100 chrXIV:560146-560884 9.77e-01 100 chrXIV:568352-568621 4.41e-01 100 chrXIV:569736-570043 4.98e-17 28_[-1(6.98e-11)]_7_[-2(2.05e-13)]_\ 6 chrXIV:574589-576287 4.20e-01 100 chrXIV:580780-581306 2.04e-01 100 chrXIV:585489-586843 7.61e-02 19_[+3(2.94e-05)]_60 chrXIV:619498-620620 1.58e-01 100 chrXIV:631745-632137 8.89e-01 100 chrXIV:632474-632892 1.35e-08 8_[+1(2.37e-11)]_62 chrXIV:664654-665597 8.42e-01 100 chrXIV:715570-716645 1.59e-02 17_[-3(1.19e-05)]_62 chrXIV:721154-723185 9.92e-01 100 chrXIV:737764-738225 4.67e-01 100 chrXIV:738443-739992 2.63e-02 59_[-3(9.31e-06)]_20 chrXV:28405-29089 1.92e-01 100 chrXV:80355-81481 7.85e-01 100 chrXV:95809-96897 7.81e-01 100 chrXV:109850-110677 1.15e-03 2_[-3(1.51e-06)]_77 chrXV:110875-111187 9.20e-01 100 chrXV:113480-113879 4.37e-01 100 chrXV:159242-160106 4.88e-01 100 chrXV:170590-170755 9.64e-01 100 chrXV:226476-227010 1.48e-02 75_[+3(1.40e-05)]_4 chrXV:228144-228490 1.13e-05 70_[+2(6.64e-10)]_1 chrXV:252846-253653 2.35e-01 100 chrXV:274545-275110 2.93e-02 12_[-3(6.59e-06)]_67 chrXV:281781-282928 3.24e-02 72_[-3(1.77e-05)]_7 chrXV:287738-288366 6.92e-01 100 chrXV:300828-302328 5.25e-01 100 chrXV:339784-340794 7.19e-06 60_[-1(8.72e-10)]_10 chrXV:353488-353718 9.54e-01 100 chrXV:353947-354653 3.88e-02 100 chrXV:370923-371383 9.49e-01 100 chrXV:380442-381322 3.40e-01 100 chrXV:381883-384386 3.21e-03 40_[+3(6.71e-07)]_39 chrXV:407583-408226 9.38e-01 100 chrXV:410447-411847 4.68e-02 5_[-2(6.85e-05)]_66 chrXV:420215-420907 6.29e-01 100 chrXV:421064-421227 1.90e-01 100 chrXV:434192-435904 7.97e-01 100 chrXV:438138-438970 8.95e-01 100 chrXV:444623-446371 3.55e-01 100 chrXV:464296-465443 5.33e-01 100 chrXV:506141-507412 6.80e-01 100 chrXV:508683-511208 2.65e-01 100 chrXV:571402-572091 7.88e-01 100 chrXV:594329-594713 8.80e-01 100 chrXV:619120-624397 8.98e-01 100 chrXV:663506-664022 9.79e-01 100 chrXV:678004-678852 6.64e-01 100 chrXV:759011-759541 1.08e-01 100 chrXV:779879-781001 9.81e-03 13_[-2(3.18e-05)]_58 chrXV:797044-797575 6.42e-01 100 chrXV:842350-843245 1.54e-03 30_[+3(1.19e-05)]_49 chrXV:877562-878108 3.16e-01 100 chrXV:910678-911724 9.20e-01 100 chrXV:912132-912616 9.44e-01 100 chrXV:960962-966518 9.46e-01 100 chrXV:966680-967778 2.04e-02 42_[-1(4.37e-05)]_28 chrXV:976392-978287 3.77e-01 100 chrXV:979724-981438 3.44e-01 100 chrXV:1005223-1006734 2.02e-01 100 chrXV:1027879-1029695 8.27e-01 100 chrXVI:55872-56371 2.79e-01 100 chrXVI:74967-76029 4.19e-01 100 chrXVI:88756-89475 9.24e-01 100 chrXVI:98523-99174 3.56e-02 58_[+3(7.85e-06)]_21 chrXVI:173049-174083 6.73e-01 100 chrXVI:209645-210624 9.62e-01 100 chrXVI:214897-216404 5.81e-04 78_[+3(9.60e-07)]_1 chrXVI:280468-281732 7.29e-01 100 chrXVI:282124-282934 5.44e-01 100 chrXVI:303338-304207 3.71e-01 100 chrXVI:310220-312853 9.08e-01 100 chrXVI:338485-339390 5.04e-01 100 chrXVI:351999-353080 4.80e-08 8_[+3(5.15e-10)]_17_[-2(2.66e-05)]_\ 25 chrXVI:354289-354938 9.90e-01 100 chrXVI:377024-377372 6.73e-01 100 chrXVI:404801-405905 7.12e-01 100 chrXVI:425786-425974 3.12e-01 100 chrXVI:435553-436171 5.20e-01 100 chrXVI:559952-560513 9.93e-13 16_[-1(7.72e-08)]_25_[-2(5.96e-11)] chrXVI:572261-572877 1.00e-03 50_[+3(1.35e-06)]_8_[+3(3.11e-07)] chrXVI:581709-582296 2.17e-02 47_[+1(4.69e-05)]_23 chrXVI:622355-623126 8.96e-01 100 chrXVI:678546-680824 5.07e-01 100 chrXVI:689282-689828 6.19e-10 66_[+2(1.33e-13)]_5 chrXVI:701867-702450 8.95e-01 100 chrXVI:718302-719629 8.67e-01 100 chrXVI:730601-731329 1.36e-01 100 chrXVI:744053-744607 1.80e-06 44_[+1(8.72e-10)]_26 chrXVI:768513-769440 3.55e-01 100 chrXVI:775681-776099 9.92e-01 100 chrXVI:810608-811443 1.63e-01 100 chrXVI:819089-820390 1.71e-01 100 chrXVI:821651-822231 8.33e-03 17_[-3(1.68e-06)]_62 chrXVI:822601-824090 3.25e-01 100 chrXVI:842859-843590 9.66e-02 100 chrXVI:856765-857081 1.54e-05 29_[-1(2.53e-07)]_9_[-1(7.78e-07)]_\ 2 chrXVI:858863-860622 3.05e-01 100 chrXVI:879655-880550 9.53e-04 55_[+3(1.13e-07)]_24 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************