******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--THP2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:332356-334155 1.0000 100 chrVIII:225332-226787 1.0000 100 chrXV:159215-160697 1.0000 100 chrVII:122062-122775 1.0000 100 chrXI:334046-334971 1.0000 100 chrI:130756-132059 1.0000 100 chrIV:1175746-1176061 1.0000 100 chrXVI:819343-821193 1.0000 100 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1.0000 100 chrXVI:64579-66536 1.0000 100 chrVII:185372-185895 1.0000 100 chrII:350640-350994 1.0000 100 chrIV:1090159-1090466 1.0000 100 chrXII:798416-801790 1.0000 100 chrIV:1239458-1240174 1.0000 100 chrV:487038-487539 1.0000 100 chrIV:200292-201605 1.0000 100 chrXIII:651178-652924 1.0000 100 chrXV:505045-505470 1.0000 100 chrIX:99677-100018 1.0000 100 chrX:366895-366995 1.0000 100 chrVII:915462-916825 1.0000 100 chrXI:208324-210236 1.0000 100 chrVII:88172-89382 1.0000 100 chrI:81915-82320 1.0000 100 chrVII:364882-366657 1.0000 100 chrXI:232783-233921 1.0000 100 chrX:75895-75995 1.0000 100 chrXIII:372185-372653 1.0000 100 chrXIII:290586-291100 1.0000 100 chrVI:180698-181231 1.0000 100 chrXIV:109875-110187 1.0000 100 chrVII:706931-707179 1.0000 100 chrVII:672528-675482 1.0000 100 chrXIII:532905-534618 1.0000 100 chrVII:92827-94024 1.0000 100 chrXV:814299-816531 1.0000 100 chrIV:579053-580705 1.0000 100 chrXII:720595-721338 1.0000 100 chrXV:805078-806619 1.0000 100 chrXIV:45219-47521 1.0000 100 chrXIV:138722-140637 1.0000 100 chrXV:900081-901215 1.0000 100 chrXV:577549-578006 1.0000 100 chrV:431037-431902 1.0000 100 chrXI:495319-497348 1.0000 100 chrX:390843-390943 1.0000 100 chrVII:260330-261699 1.0000 100 chrXV:505742-506745 1.0000 100 chrX:290876-290976 1.0000 100 chrXV:727821-733307 1.0000 100 chrXVI:711473-712682 1.0000 100 chrXII:628205-628881 1.0000 100 chrXVI:868594-869766 1.0000 100 chrXII:712293-712708 1.0000 100 chrX:73425-73525 1.0000 100 chrIX:68697-69899 1.0000 100 chrXV:758983-759514 1.0000 100 chrIV:1201518-1201949 1.0000 100 chrXIII:807980-808531 1.0000 100 chrVIII:362121-363235 1.0000 100 chrII:602904-603527 1.0000 100 chrXII:962816-963251 1.0000 100 chrXIV:302669-303885 1.0000 100 chrVII:39435-41259 1.0000 100 chrXV:612707-616585 1.0000 100 chrXIII:498910-500712 1.0000 100 chrXI:666636-666792 1.0000 100 chrXIV:499340-500749 1.0000 100 chrVI:63985-65319 1.0000 100 chrV:396721-398092 1.0000 100 chrIII:15429-16643 1.0000 100 chrXII:546150-547582 1.0000 100 chrIX:26940-28508 1.0000 100 chrXII:198690-200062 1.0000 100 chrX:396605-396705 1.0000 100 chrXV:1015202-1017374 1.0000 100 chrVII:362309-363901 1.0000 100 chrVIII:125801-126277 1.0000 100 chrIII:151152-151520 1.0000 100 chrV:66934-68890 1.0000 100 chrX:123805-123905 1.0000 100 chrIX:316786-318329 1.0000 100 chrXIV:495241-495972 1.0000 100 chrIX:231295-232416 1.0000 100 chrXVI:188679-188894 1.0000 100 chrXIII:586399-586890 1.0000 100 chrXVI:208569-210474 1.0000 100 chrVII:786957-788195 1.0000 100 chrVII:930860-931164 1.0000 100 chrXI:177199-178640 1.0000 100 chrXII:875228-877037 1.0000 100 chrXV:378565-380115 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--THP2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--THP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--THP2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--THP2/background): A 0.307 C 0.193 G 0.193 T 0.307 ******************************************************************************** ******************************************************************************** MOTIF DMBSGGRDTCGAACCSVGGAYCYYHBGRT MEME-1 width = 29 sites = 56 llr = 1156 E-value = 8.2e-224 ******************************************************************************** -------------------------------------------------------------------------------- Motif DMBSGGRDTCGAACCSVGGAYCYYHBGRT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 33:12154:::aa:1:3:17:1:14215: pos.-specific C :645:::1:8:::a75421:67454421: probability G 41457952::a::::43681:1::12731 matrix T 3:2:1::2a2::::21:3:2416422::9 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 * **** * Relative 1.4 * ****** * Entropy 1.2 * * ****** * * * * (29.8 bits) 0.9 *** ******* * *** * * 0.7 ****** ******** ** **** * * 0.5 ******* **************** *** 0.2 ******* ********************* 0.0 ----------------------------- Multilevel GCGGGGAATCGAACCCCGGACCTCACGAT consensus AACCA GG TGGT TT CTCGCG sequence T T T A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRDTCGAACCSVGGAYCYYHBGRT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:1016961-1017468 + 50 1.20e-13 AAACTCCGAA GCGGGGAGTCGAACCCCGGTCTCCACGGT GAGAACGTGA chrXIII:290586-291100 - 44 3.88e-13 AGACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrVII:541723-542148 - 1 3.88e-13 ACACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGT chrIII:82386-82643 + 5 3.88e-13 CGAT ACGGGGAGTCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrII:644964-645405 - 69 3.88e-13 GAT ACGGGGAGTCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrXII:797012-797419 - 49 3.88e-13 TATCTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrV:354734-355189 - 59 3.88e-13 GTACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrX:396605-396705 + 11 4.55e-13 AAATGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGAT GGCAACGTTG chrVI:180698-181231 + 67 4.55e-13 GACTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGAT GGCAA chrXVI:860196-860651 - 41 4.55e-13 ATCTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGAT GGCAACGTTG chrIV:83433-83808 - 13 4.55e-13 ACTTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGAT GGCAACGTTG chrXIV:569726-570075 + 24 3.11e-12 GAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGT TATTAGCACG chrIV:667790-668229 + 55 3.11e-12 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGT TATTAGCACG chrVII:738890-739515 - 8 3.11e-12 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGT TATTAGC chrII:197289-197825 - 25 3.11e-12 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGT TATTAGCACG chrIII:168152-168506 + 29 5.35e-12 AAAAGGTCCT ACCCGGATTCGAACCGGGGTTGTCCGGAT CAAAACCGAA chrIV:645037-645356 + 14 5.35e-12 AAAAGGTCCT ACCCGGATTCGAACCGGGGTTGTCCGGAT CAAAACCGAA chrV:130811-131324 + 72 1.16e-11 AATAGGTCTT ACCCGGATTCGAACCGGGGTTGTTCGGAT chrIII:151152-151520 + 5 2.41e-11 CCTG TAGGGGGCTCGAACCCCTAACCTTATGAT TAAGAGTCAT chrIV:1351881-1353042 + 62 2.41e-11 GATAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGAT TAAGAGTCAT chrIX:300107-300456 + 4 2.41e-11 CTG TAGGGGGCTCGAACCCCTAACCTTATGAT TAAGAGTCAT chrXIII:480426-480809 + 61 2.41e-11 AGAAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGAT TAAGAGTCAT chrVII:115346-115725 - 63 3.43e-11 AACTCCTCA TAGGGGGCTCGAACCCCTGACATTTCGGT ATCCTTGCTT chrXII:214709-215057 + 57 5.41e-11 AAATGGACGC AACCGGAATCGAACCGATGACCTCTTCCT TGCAAGGGAA chrV:311756-312283 + 61 5.41e-11 CATTGGACGC AACCGGAATCGAACCGATGACCTCTTCCT TGCAAGGGAA chrXIII:807980-808531 + 48 7.53e-11 GGAAGGTCCC ACCCGGATTCGAACTGGGGTTGTTCGGAT CAGAACCGAA chrIV:568708-569224 - 2 9.35e-11 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGAT T chrXIII:586399-586890 + 49 1.75e-10 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCG TGTTAAGCAG chrX:378232-378332 - 48 1.75e-10 AATTGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCG TGTTAAGCAG chrV:438543-438955 - 39 1.75e-10 AATTGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCG TGTTAAGCAG chrVIII:358307-358736 + 14 1.94e-10 ATATGCGAAT TCTGTGGATCGAACACAGGACCTCCAGAT AACTTGACCG chrXIII:352116-352619 - 18 1.94e-10 TAATGCGAAT TCTGTGGATCGAACACAGGACCTCCAGAT AACTTGACCG chrXVI:622366-622813 + 8 1.94e-10 TGCGAAT TCTGTGGATCGAACACAGGACCTCCAGAT AACTTGACCG chrVIII:475563-475903 + 30 2.89e-10 AAATGTTCCA ACCGAGGATCGAACTCGGGACCTTTGCCG TGTGAAGGCA chrXIV:96025-96455 + 58 3.87e-10 ATTTGAGCGG TACGAGAATCGAACCCGTGTCCCCACCTT GGAAGGGTGG chrVII:779420-779919 - 33 3.87e-10 TCTTGAGCGG TACGAGAATCGAACCCGTGTCCCCACCTT GGAAGGGTGG chrXV:464308-464785 - 20 4.69e-10 AAAGGGGCGA GCTGGGAATTGAACCCAGGGCCTCTCGCA TGCTTTGTCT chrX:390843-390943 + 27 5.66e-10 ATATGCTCCA GGGGAGGTTCGAACTCTCGACCTTCAGAT TATGAGACTG chrIV:1175746-1176061 - 13 5.66e-10 AAATGCTCCA GGGGAGGTTCGAACTCTCGACCTTCAGAT TATGAGACTG chrIV:946148-946601 - 41 8.93e-10 AAATCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGAT TTCGTAGTGA chrXIII:837774-838220 - 34 8.93e-10 ATATCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGAT TTCGTAGTGG chrIII:295321-295818 - 2 1.27e-09 AAATGCTTCC AATCGGATTTGAACCGATGATCTCCACAT T chrV:492215-492559 + 22 2.71e-09 ATCCTTCCCC GCCAGGACTTGAACCTGGAATCTTCTGGT TCGTAGCCAG chrIV:619746-620173 + 67 2.71e-09 AATCTTCCCC GCCAGGACTTGAACCTGGAATCTTCTGGT TCGTA chrIII:149729-150173 - 55 3.45e-09 TAATAGCGCC GCTCGGTTTCGATCCGAGGACATCAGGGT TATGAGCCCT chrX:517665-517765 + 11 3.45e-09 GCTTAGCGCC GCTCGGTTTCGATCCGAGGACATCAGGGT TATGAGCCCT chrXIII:379116-379593 + 6 4.04e-09 AAACG GACAGGAATTGAACCTGCAACCCTTCGAT TGCAATCTTA chrVI:137288-137690 + 54 6.41e-09 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGAT TAACAGTCGC chrXIV:632437-632873 - 32 6.41e-09 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGAT TAACAGTCGC chrVII:730975-731426 - 25 6.41e-09 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGAT TAACAGTCGC chrII:347442-347894 + 42 8.62e-09 ACGGTTGTCC GCGCGAGTTCGAACCTCGCATCCTTCAGT AATATTTTTT chrXIV:725938-726367 - 30 8.62e-09 ACGGTTGTCC GCGCGAGTTCGAACCTCGCATCCTTCAGT ATTTTTTTTT chrIV:519660-519908 + 66 8.62e-09 ACGGTTGTCC GCGCGAGTTCGAACCTCGCATCCTTCAAT AACTTA chrXIII:321020-321309 + 40 1.15e-08 AAATGGACGA GTCCGGAATCGAACCGGAGACCTCTCCCA TGCTAAGGGA chrVIII:466817-467256 - 40 2.00e-08 TAATGCCACC TGCCAGAATTGAACTAGCGACCTTTGCAT TACAAGTGCA chrII:642867-643238 + 12 2.28e-08 AGAAGCTCGC ACTCAGGATCGAACTAAGGACCAACAGAT TTGCAATCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRDTCGAACCSVGGAYCYYHBGRT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1016961-1017468 1.2e-13 49_[+1]_22 chrXIII:290586-291100 3.9e-13 43_[-1]_28 chrVII:541723-542148 3.9e-13 [-1]_71 chrIII:82386-82643 3.9e-13 4_[+1]_67 chrII:644964-645405 3.9e-13 68_[-1]_3 chrXII:797012-797419 3.9e-13 48_[-1]_23 chrV:354734-355189 3.9e-13 58_[-1]_13 chrX:396605-396705 4.5e-13 10_[+1]_61 chrVI:180698-181231 4.5e-13 66_[+1]_5 chrXVI:860196-860651 4.5e-13 40_[-1]_31 chrIV:83433-83808 4.5e-13 12_[-1]_59 chrXIV:569726-570075 3.1e-12 23_[+1]_48 chrIV:667790-668229 3.1e-12 54_[+1]_17 chrVII:738890-739515 3.1e-12 7_[-1]_64 chrII:197289-197825 3.1e-12 24_[-1]_47 chrIII:168152-168506 5.4e-12 28_[+1]_43 chrIV:645037-645356 5.4e-12 13_[+1]_58 chrV:130811-131324 1.2e-11 71_[+1] chrIII:151152-151520 2.4e-11 4_[+1]_67 chrIV:1351881-1353042 2.4e-11 61_[+1]_10 chrIX:300107-300456 2.4e-11 3_[+1]_68 chrXIII:480426-480809 2.4e-11 60_[+1]_11 chrVII:115346-115725 3.4e-11 62_[-1]_9 chrXII:214709-215057 5.4e-11 56_[+1]_15 chrV:311756-312283 5.4e-11 60_[+1]_11 chrXIII:807980-808531 7.5e-11 47_[+1]_24 chrIV:568708-569224 9.4e-11 1_[-1]_70 chrXIII:586399-586890 1.8e-10 48_[+1]_23 chrX:378232-378332 1.8e-10 47_[-1]_24 chrV:438543-438955 1.8e-10 38_[-1]_33 chrVIII:358307-358736 1.9e-10 13_[+1]_58 chrXIII:352116-352619 1.9e-10 17_[-1]_54 chrXVI:622366-622813 1.9e-10 7_[+1]_64 chrVIII:475563-475903 2.9e-10 29_[+1]_42 chrXIV:96025-96455 3.9e-10 57_[+1]_14 chrVII:779420-779919 3.9e-10 32_[-1]_39 chrXV:464308-464785 4.7e-10 19_[-1]_52 chrX:390843-390943 5.7e-10 26_[+1]_45 chrIV:1175746-1176061 5.7e-10 12_[-1]_59 chrIV:946148-946601 8.9e-10 40_[-1]_31 chrXIII:837774-838220 8.9e-10 33_[-1]_38 chrIII:295321-295818 1.3e-09 1_[-1]_70 chrV:492215-492559 2.7e-09 21_[+1]_50 chrIV:619746-620173 2.7e-09 66_[+1]_5 chrIII:149729-150173 3.5e-09 54_[-1]_17 chrX:517665-517765 3.5e-09 10_[+1]_61 chrXIII:379116-379593 4e-09 5_[+1]_66 chrVI:137288-137690 6.4e-09 53_[+1]_18 chrXIV:632437-632873 6.4e-09 31_[-1]_40 chrVII:730975-731426 6.4e-09 24_[-1]_47 chrII:347442-347894 8.6e-09 41_[+1]_30 chrXIV:725938-726367 8.6e-09 29_[-1]_42 chrIV:519660-519908 8.6e-09 65_[+1]_6 chrXIII:321020-321309 1.1e-08 39_[+1]_32 chrVIII:466817-467256 2e-08 39_[-1]_32 chrII:642867-643238 2.3e-08 11_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRDTCGAACCSVGGAYCYYHBGRT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DMBSGGRDTCGAACCSVGGAYCYYHBGRT width=29 seqs=56 chrIV:1016961-1017468 ( 50) GCGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrXIII:290586-291100 ( 44) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrVII:541723-542148 ( 1) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrIII:82386-82643 ( 5) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrII:644964-645405 ( 69) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrXII:797012-797419 ( 49) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrV:354734-355189 ( 59) ACGGGGAGTCGAACCCCGGTCTCCACGGT 1 chrX:396605-396705 ( 11) GCCCGGAATCGAACCGGGGGCCCAACGAT 1 chrVI:180698-181231 ( 67) GCCCGGAATCGAACCGGGGGCCCAACGAT 1 chrXVI:860196-860651 ( 41) GCCCGGAATCGAACCGGGGGCCCAACGAT 1 chrIV:83433-83808 ( 13) GCCCGGAATCGAACCGGGGGCCCAACGAT 1 chrXIV:569726-570075 ( 24) TAGCGGGATCGAACCGCTGATCCCCGCGT 1 chrIV:667790-668229 ( 55) TAGCGGGATCGAACCGCTGATCCCCGCGT 1 chrVII:738890-739515 ( 8) TAGCGGGATCGAACCGCTGATCCCCGCGT 1 chrII:197289-197825 ( 25) TAGCGGGATCGAACCGCTGATCCCCGCGT 1 chrIII:168152-168506 ( 29) ACCCGGATTCGAACCGGGGTTGTCCGGAT 1 chrIV:645037-645356 ( 14) ACCCGGATTCGAACCGGGGTTGTCCGGAT 1 chrV:130811-131324 ( 72) ACCCGGATTCGAACCGGGGTTGTTCGGAT 1 chrIII:151152-151520 ( 5) TAGGGGGCTCGAACCCCTAACCTTATGAT 1 chrIV:1351881-1353042 ( 62) TAGGGGGCTCGAACCCCTAACCTTATGAT 1 chrIX:300107-300456 ( 4) TAGGGGGCTCGAACCCCTAACCTTATGAT 1 chrXIII:480426-480809 ( 61) TAGGGGGCTCGAACCCCTAACCTTATGAT 1 chrVII:115346-115725 ( 63) TAGGGGGCTCGAACCCCTGACATTTCGGT 1 chrXII:214709-215057 ( 57) AACCGGAATCGAACCGATGACCTCTTCCT 1 chrV:311756-312283 ( 61) AACCGGAATCGAACCGATGACCTCTTCCT 1 chrXIII:807980-808531 ( 48) ACCCGGATTCGAACTGGGGTTGTTCGGAT 1 chrIV:568708-569224 ( 2) GATGGGGGTCGAACCCATAATCTTCTGAT 1 chrXIII:586399-586890 ( 49) GCCCAGGATCGAACTGGGGACGTTCTGCG 1 chrX:378232-378332 ( 48) GCCCAGGATCGAACTGGGGACGTTCTGCG 1 chrV:438543-438955 ( 39) GCCCAGGATCGAACTGGGGACGTTCTGCG 1 chrVIII:358307-358736 ( 14) TCTGTGGATCGAACACAGGACCTCCAGAT 1 chrXIII:352116-352619 ( 18) TCTGTGGATCGAACACAGGACCTCCAGAT 1 chrXVI:622366-622813 ( 8) TCTGTGGATCGAACACAGGACCTCCAGAT 1 chrVIII:475563-475903 ( 30) ACCGAGGATCGAACTCGGGACCTTTGCCG 1 chrXIV:96025-96455 ( 58) TACGAGAATCGAACCCGTGTCCCCACCTT 1 chrVII:779420-779919 ( 33) TACGAGAATCGAACCCGTGTCCCCACCTT 1 chrXV:464308-464785 ( 20) GCTGGGAATTGAACCCAGGGCCTCTCGCA 1 chrX:390843-390943 ( 27) GGGGAGGTTCGAACTCTCGACCTTCAGAT 1 chrIV:1175746-1176061 ( 13) GGGGAGGTTCGAACTCTCGACCTTCAGAT 1 chrIV:946148-946601 ( 41) GGGGCGAGTCGAACGCCCGATCTCAAGAT 1 chrXIII:837774-838220 ( 34) GGGGCGAGTCGAACGCCCGATCTCAAGAT 1 chrIII:295321-295818 ( 2) AATCGGATTTGAACCGATGATCTCCACAT 1 chrV:492215-492559 ( 22) GCCAGGACTTGAACCTGGAATCTTCTGGT 1 chrIV:619746-620173 ( 67) GCCAGGACTTGAACCTGGAATCTTCTGGT 1 chrIII:149729-150173 ( 55) GCTCGGTTTCGATCCGAGGACATCAGGGT 1 chrX:517665-517765 ( 11) GCTCGGTTTCGATCCGAGGACATCAGGGT 1 chrXIII:379116-379593 ( 6) GACAGGAATTGAACCTGCAACCCTTCGAT 1 chrVI:137288-137690 ( 54) AGTGAGGGTTGAACTCACGATCTTGCGAT 1 chrXIV:632437-632873 ( 32) AGTGAGGGTTGAACTCACGATCTTGCGAT 1 chrVII:730975-731426 ( 25) AGTGAGGGTTGAACTCACGATCTTGCGAT 1 chrII:347442-347894 ( 42) GCGCGAGTTCGAACCTCGCATCCTTCAGT 1 chrXIV:725938-726367 ( 30) GCGCGAGTTCGAACCTCGCATCCTTCAGT 1 chrIV:519660-519908 ( 66) GCGCGAGTTCGAACCTCGCATCCTTCAAT 1 chrXIII:321020-321309 ( 40) GTCCGGAATCGAACCGGAGACCTCTCCCA 1 chrVIII:466817-467256 ( 40) TGCCAGAATTGAACTAGCGACCTTTGCAT 1 chrII:642867-643238 ( 12) ACTCAGGATCGAACTAAGGACCAACAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRDTCGAACCSVGGAYCYYHBGRT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.2607 E= 8.2e-224 7 -1245 109 -19 -10 152 -44 -410 -1245 96 109 -52 -252 126 132 -1245 -40 -244 181 -252 -252 -1245 229 -1245 71 -1245 126 -310 48 -63 26 -52 -1245 -1245 -1245 171 -1245 212 -1245 -93 -1245 -1245 237 -1245 171 -1245 -1245 -1245 165 -1245 -1245 -310 -1245 237 -1245 -1245 -252 185 -244 -52 -310 132 96 -152 -29 96 81 -310 -410 -27 152 -19 -110 -185 205 -1245 115 -1245 -111 -40 -1245 173 -1245 22 -252 185 -63 -129 -410 96 -1245 99 -178 132 -1245 48 29 96 -185 -64 -93 109 15 -52 -252 15 192 -1245 71 -44 73 -310 -310 -1245 -144 154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRDTCGAACCSVGGAYCYYHBGRT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 56 E= 8.2e-224 0.321429 0.000000 0.410714 0.267857 0.285714 0.553571 0.142857 0.017857 0.000000 0.375000 0.410714 0.214286 0.053571 0.464286 0.482143 0.000000 0.232143 0.035714 0.678571 0.053571 0.053571 0.000000 0.946429 0.000000 0.500000 0.000000 0.464286 0.035714 0.428571 0.125000 0.232143 0.214286 0.000000 0.000000 0.000000 1.000000 0.000000 0.839286 0.000000 0.160714 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.964286 0.000000 0.000000 0.035714 0.000000 1.000000 0.000000 0.000000 0.053571 0.696429 0.035714 0.214286 0.035714 0.482143 0.375000 0.107143 0.250000 0.375000 0.339286 0.035714 0.017857 0.160714 0.553571 0.267857 0.142857 0.053571 0.803571 0.000000 0.678571 0.000000 0.089286 0.232143 0.000000 0.642857 0.000000 0.357143 0.053571 0.696429 0.125000 0.125000 0.017857 0.375000 0.000000 0.607143 0.089286 0.482143 0.000000 0.428571 0.375000 0.375000 0.053571 0.196429 0.160714 0.410714 0.214286 0.214286 0.053571 0.214286 0.732143 0.000000 0.500000 0.142857 0.321429 0.035714 0.035714 0.000000 0.071429 0.892857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRDTCGAACCSVGGAYCYYHBGRT MEME-1 regular expression -------------------------------------------------------------------------------- [GAT][CA][GCT][GC][GA]G[AG][AGT]TCGAAC[CT][CG][CGA][GT]G[AT][CT]C[TC][CT][AC][CGT][GC][AG]T -------------------------------------------------------------------------------- Time 352.24 secs. ******************************************************************************** ******************************************************************************** MOTIF AGYCTGACGCSHTAMCCAHTDSGCYAWA MEME-2 width = 28 sites = 41 llr = 768 E-value = 1.8e-113 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGYCTGACGCSHTAMCCAHTDSGCYAWA MEME-2 Description -------------------------------------------------------------------------------- Simplified A a3::2261:::3:941273:222::766 pos.-specific C ::37::17:853:149615315:763:2 probability G :712262:a:4:::2:12::3382:::1 matrix T ::6:5212:214a:::::373:::4:3: bits 2.4 * 2.1 * 1.9 * 1.7 * * * * Relative 1.4 * * ** * * ** Entropy 1.2 ** * ** ** * *** (27.0 bits) 0.9 ** * **** ** ** * **** 0.7 **** **** ** *** * **** 0.5 **** * **** ******** ******* 0.2 ******************** ******* 0.0 ---------------------------- Multilevel AGTCTGACGCCTTAACCACTTCGCCAAA consensus ACGG GT TGC C A ACGGAGTCTC sequence A T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYCTGACGCSHTAMCCAHTDSGCYAWA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrXVI:689404-689831 - 3 6.36e-13 ACAGATTTCA AGTCTGTCGCCTTAACCACTCGGCCATA GT chrV:288223-288721 + 70 6.36e-13 ACAGATTTCA AGTCTGTCGCCTTAACCACTCGGCCATA GTG chrXV:353927-354289 + 23 1.86e-12 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATA GAAGCAGTAA chrX:59018-59118 + 16 1.86e-12 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATA GAAGCTTCTA chrIX:174893-175193 - 43 1.86e-12 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATA GAAGCTCGTA chrIII:151152-151520 + 38 1.26e-11 TATGATTAAG AGTCATACGCGCTACCGATTGCGCCAAC AAGGCTCTTT chrIV:1201518-1201949 - 72 1.26e-11 G AGTCATACGCGCTACCGATTGCGCCAAC AAGGCTATTT chrXVI:581874-582279 - 41 1.26e-11 TATGATTAAG AGTCATACGCGCTACCGATTGCGCCAAC AAGGCTCTTT chrIX:300107-300456 + 37 1.26e-11 TATGATTAAG AGTCATACGCGCTACCGATTGCGCCAAC AAGGCTATTT chrV:435634-436007 + 22 1.26e-11 TATGATTAAG AGTCATACGCGCTACCGATTGCGCCAAC AAGGCTCTTA chrX:523803-523903 + 11 1.44e-10 AAAGATTTCT AATCTTTCGCCTTAACCACTCGGCCAAG TTGCCTTTAA chrIV:437568-438038 - 24 1.44e-10 AAAGATTTCT AATCTTTCGCCTTAACCACTCGGCCAAG TTGCCTTACT chrIV:1305448-1305782 - 70 1.44e-10 TCT AATCTTTCGCCTTAACCACTCGGCCAAG TTGCCTTAAT chrVIII:237754-238112 + 24 1.62e-10 TTTTTTCTTC AGTCTGGCGCTCTCCCAACTGAGCTAAA TCCGCTTACT chrVIII:358307-358736 + 66 1.62e-10 TTTTTTCTTC AGTCTGGCGCTCTCCCAACTGAGCTAAA TCCGCTT chrXVI:622366-622813 + 60 1.62e-10 TTTTTTCTTC AGTCTGGCGCTCTCCCAACTGAGCTAAA TCCGCATATC chrIV:359377-359763 - 62 3.29e-10 TGCGCTTAAA AGCCGAACGCTCTACCAACTGAGCTAAC AAGGATGAGT chrVII:115346-115725 - 8 3.29e-10 TGCGCTTAAA AGCCGAACGCTCTACCAACTGAGCTAAC AAGGATG chrXIV:374681-375093 - 37 5.75e-10 GTTTTTCTTC AGTCTGGCGCTCTCCCAACTGAGCTAAG TCCGCTTATT chrX:617719-617819 - 53 7.93e-10 AATCCACCTA AATCTGACGCCTTAAACCACTCGGCCAA ACTCCCATTG chrXII:592373-592810 + 45 7.93e-10 AATCCACCTA AATCTGACGCCTTAAACCACTCGGCCAA ACTCCCATTG chrXII:962816-963251 + 39 1.33e-09 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAA CCCTCCGTCG chrXI:84004-84431 - 47 1.33e-09 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAA CCCTCCATAC chrIV:519660-519908 - 15 1.33e-09 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAA CCCTCCGTAA chrXI:219703-220097 - 50 5.41e-09 CTCCCATGCT AAGGGAGCGCGCTACCGACTACGCCACA CGCCCTATTT chrXII:734622-734957 - 69 8.98e-09 TATT AGCACGGTGCCTTAACCAACTGGGCCAA GAGACCAAAC chrXIV:569726-570075 + 57 8.98e-09 CCGCGTTATT AGCACGGTGCCTTAACCAACTGGGCCAA GAGACCATTG chrV:492215-492559 + 55 8.98e-09 TCTGGTTCGT AGCCAGACGCCGTGACCATTGGGCCACG AGGAATAGGA chrXIII:290586-291100 - 13 1.14e-08 CCACGGTGAA AGCGTGATGTGATAGCCGTTACACTATA TCGGATTATA chrIII:82386-82643 + 37 1.14e-08 CCACGGTGAA AGCGTGATGTGATAGCCGTTACACTATA TCGGATAACA chrII:644964-645405 - 38 1.14e-08 CCACGGTGAA AGCGTGATGTGATAGCCGTTACACTATA TCGGATAATA chrXII:797012-797419 - 18 1.14e-08 CCACGGTGAA AGCGTGATGTGATAGCCGTTACACTATA TCGGACGACA chrV:354734-355189 - 28 1.14e-08 CCACGGTGAA AGCGTGATGTGATAGCCGTTACACTATA TCGGATTACA chrXV:228126-228523 - 63 1.24e-08 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCAT GGAGTCTAAT chrIII:127547-127871 - 63 1.24e-08 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCAT GGAGTCATTT chrII:350640-350994 - 65 2.11e-08 CGGATCAA AACCGAAAGTGATAACCACTACACTATA AAACCCTTTT chrXII:448537-448939 + 1 2.11e-08 . AACCGAAAGTGATAACCACTACACTATA GGACCGGAAC chrIII:168152-168506 + 61 2.11e-08 TCCGGATCAA AACCGAAAGTGATAACCACTACACTATA GGACCAGGAC chrIV:645037-645356 + 46 2.11e-08 TCCGGATCAA AACCGAAAGTGATAACCACTACACTATA GGACCGTAAC chrX:378232-378332 - 16 8.55e-08 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCAC GAAACCTATT chrV:438543-438955 - 7 8.55e-08 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCAC GAAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYCTGACGCSHTAMCCAHTDSGCYAWA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:689404-689831 6.4e-13 2_[-2]_70 chrV:288223-288721 6.4e-13 69_[+2]_3 chrXV:353927-354289 1.9e-12 22_[+2]_50 chrX:59018-59118 1.9e-12 15_[+2]_57 chrIX:174893-175193 1.9e-12 42_[-2]_30 chrIII:151152-151520 1.3e-11 37_[+2]_35 chrIV:1201518-1201949 1.3e-11 71_[-2]_1 chrXVI:581874-582279 1.3e-11 40_[-2]_32 chrIX:300107-300456 1.3e-11 36_[+2]_36 chrV:435634-436007 1.3e-11 21_[+2]_51 chrX:523803-523903 1.4e-10 10_[+2]_62 chrIV:437568-438038 1.4e-10 23_[-2]_49 chrIV:1305448-1305782 1.4e-10 69_[-2]_3 chrVIII:237754-238112 1.6e-10 23_[+2]_49 chrVIII:358307-358736 1.6e-10 65_[+2]_7 chrXVI:622366-622813 1.6e-10 59_[+2]_13 chrIV:359377-359763 3.3e-10 61_[-2]_11 chrVII:115346-115725 3.3e-10 7_[-2]_65 chrXIV:374681-375093 5.8e-10 36_[-2]_36 chrX:617719-617819 7.9e-10 52_[-2]_20 chrXII:592373-592810 7.9e-10 44_[+2]_28 chrXII:962816-963251 1.3e-09 38_[+2]_34 chrXI:84004-84431 1.3e-09 46_[-2]_26 chrIV:519660-519908 1.3e-09 14_[-2]_58 chrXI:219703-220097 5.4e-09 49_[-2]_23 chrXII:734622-734957 9e-09 68_[-2]_4 chrXIV:569726-570075 9e-09 56_[+2]_16 chrV:492215-492559 9e-09 54_[+2]_18 chrXIII:290586-291100 1.1e-08 12_[-2]_60 chrIII:82386-82643 1.1e-08 36_[+2]_36 chrII:644964-645405 1.1e-08 37_[-2]_35 chrXII:797012-797419 1.1e-08 17_[-2]_55 chrV:354734-355189 1.1e-08 27_[-2]_45 chrXV:228126-228523 1.2e-08 62_[-2]_10 chrIII:127547-127871 1.2e-08 62_[-2]_10 chrII:350640-350994 2.1e-08 64_[-2]_8 chrXII:448537-448939 2.1e-08 [+2]_72 chrIII:168152-168506 2.1e-08 60_[+2]_12 chrIV:645037-645356 2.1e-08 45_[+2]_27 chrX:378232-378332 8.6e-08 15_[-2]_57 chrV:438543-438955 8.6e-08 6_[-2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYCTGACGCSHTAMCCAHTDSGCYAWA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGYCTGACGCSHTAMCCAHTDSGCYAWA width=28 seqs=41 chrXVI:689404-689831 ( 3) AGTCTGTCGCCTTAACCACTCGGCCATA 1 chrV:288223-288721 ( 70) AGTCTGTCGCCTTAACCACTCGGCCATA 1 chrXV:353927-354289 ( 23) AGTGTGGCGCCTTACCAACTTGGCCATA 1 chrX:59018-59118 ( 16) AGTGTGGCGCCTTACCAACTTGGCCATA 1 chrIX:174893-175193 ( 43) AGTGTGGCGCCTTACCAACTTGGCCATA 1 chrIII:151152-151520 ( 38) AGTCATACGCGCTACCGATTGCGCCAAC 1 chrIV:1201518-1201949 ( 72) AGTCATACGCGCTACCGATTGCGCCAAC 1 chrXVI:581874-582279 ( 41) AGTCATACGCGCTACCGATTGCGCCAAC 1 chrIX:300107-300456 ( 37) AGTCATACGCGCTACCGATTGCGCCAAC 1 chrV:435634-436007 ( 22) AGTCATACGCGCTACCGATTGCGCCAAC 1 chrX:523803-523903 ( 11) AATCTTTCGCCTTAACCACTCGGCCAAG 1 chrIV:437568-438038 ( 24) AATCTTTCGCCTTAACCACTCGGCCAAG 1 chrIV:1305448-1305782 ( 70) AATCTTTCGCCTTAACCACTCGGCCAAG 1 chrVIII:237754-238112 ( 24) AGTCTGGCGCTCTCCCAACTGAGCTAAA 1 chrVIII:358307-358736 ( 66) AGTCTGGCGCTCTCCCAACTGAGCTAAA 1 chrXVI:622366-622813 ( 60) AGTCTGGCGCTCTCCCAACTGAGCTAAA 1 chrIV:359377-359763 ( 62) AGCCGAACGCTCTACCAACTGAGCTAAC 1 chrVII:115346-115725 ( 8) AGCCGAACGCTCTACCAACTGAGCTAAC 1 chrXIV:374681-375093 ( 37) AGTCTGGCGCTCTCCCAACTGAGCTAAG 1 chrX:617719-617819 ( 53) AATCTGACGCCTTAAACCACTCGGCCAA 1 chrXII:592373-592810 ( 45) AATCTGACGCCTTAAACCACTCGGCCAA 1 chrXII:962816-963251 ( 39) AGTCTGCCGCCTTAGACCACTCGGCCAA 1 chrXI:84004-84431 ( 47) AGTCTGCCGCCTTAGACCACTCGGCCAA 1 chrIV:519660-519908 ( 15) AGTCTGCCGCCTTAGACCACTCGGCCAA 1 chrXI:219703-220097 ( 50) AAGGGAGCGCGCTACCGACTACGCCACA 1 chrXII:734622-734957 ( 69) AGCACGGTGCCTTAACCAACTGGGCCAA 1 chrXIV:569726-570075 ( 57) AGCACGGTGCCTTAACCAACTGGGCCAA 1 chrV:492215-492559 ( 55) AGCCAGACGCCGTGACCATTGGGCCACG 1 chrXIII:290586-291100 ( 13) AGCGTGATGTGATAGCCGTTACACTATA 1 chrIII:82386-82643 ( 37) AGCGTGATGTGATAGCCGTTACACTATA 1 chrII:644964-645405 ( 38) AGCGTGATGTGATAGCCGTTACACTATA 1 chrXII:797012-797419 ( 18) AGCGTGATGTGATAGCCGTTACACTATA 1 chrV:354734-355189 ( 28) AGCGTGATGTGATAGCCGTTACACTATA 1 chrXV:228126-228523 ( 63) AGTCGCACGCCTTAACCAACTTGGCCAT 1 chrIII:127547-127871 ( 63) AGTCGCACGCCTTAACCAACTTGGCCAT 1 chrII:350640-350994 ( 65) AACCGAAAGTGATAACCACTACACTATA 1 chrXII:448537-448939 ( 1) AACCGAAAGTGATAACCACTACACTATA 1 chrIII:168152-168506 ( 61) AACCGAAAGTGATAACCACTACACTATA 1 chrIV:645037-645356 ( 46) AACCGAAAGTGATAACCACTACACTATA 1 chrX:378232-378332 ( 16) AAGCAGATGCCATAACCGACTAGACCAC 1 chrV:438543-438955 ( 7) AAGCAGATGCCATAACCGACTAGACCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYCTGACGCSHTAMCCAHTDSGCYAWA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43800 bayes= 9.52429 E= 1.8e-113 171 -1200 -1200 -1200 -7 -1200 187 -1200 -1200 82 -140 93 -265 192 18 -1200 -65 -199 18 81 -84 -199 160 -65 87 -140 33 -133 -165 182 -1200 -48 -1200 -1200 237 -1200 -1200 201 -1200 -48 -1200 133 92 -107 -19 60 -298 44 -1200 -1200 -1200 171 152 -99 -298 -1200 52 92 1 -1200 -133 218 -1200 -1200 -48 171 -40 -1200 121 -67 -18 -1200 -19 126 -1200 -19 -1200 47 -1200 125 -33 -67 60 16 -65 133 47 -265 -48 -1200 201 -1200 -265 192 18 -1200 -1200 171 -1200 25 125 47 -1200 -1200 99 -199 -1200 16 99 18 -67 -265 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYCTGACGCSHTAMCCAHTDSGCYAWA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 41 E= 1.8e-113 1.000000 0.000000 0.000000 0.000000 0.292683 0.000000 0.707317 0.000000 0.000000 0.341463 0.073171 0.585366 0.048780 0.731707 0.219512 0.000000 0.195122 0.048780 0.219512 0.536585 0.170732 0.048780 0.585366 0.195122 0.560976 0.073171 0.243902 0.121951 0.097561 0.682927 0.000000 0.219512 0.000000 0.000000 1.000000 0.000000 0.000000 0.780488 0.000000 0.219512 0.000000 0.487805 0.365854 0.146341 0.268293 0.292683 0.024390 0.414634 0.000000 0.000000 0.000000 1.000000 0.878049 0.097561 0.024390 0.000000 0.439024 0.365854 0.195122 0.000000 0.121951 0.878049 0.000000 0.000000 0.219512 0.634146 0.146341 0.000000 0.707317 0.121951 0.170732 0.000000 0.268293 0.463415 0.000000 0.268293 0.000000 0.268293 0.000000 0.731707 0.243902 0.121951 0.292683 0.341463 0.195122 0.487805 0.268293 0.048780 0.219512 0.000000 0.780488 0.000000 0.048780 0.731707 0.219512 0.000000 0.000000 0.634146 0.000000 0.365854 0.731707 0.268293 0.000000 0.000000 0.609756 0.048780 0.000000 0.341463 0.609756 0.219512 0.121951 0.048780 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGYCTGACGCSHTAMCCAHTDSGCYAWA MEME-2 regular expression -------------------------------------------------------------------------------- A[GA][TC][CG][TG]G[AG][CT]G[CT][CG][TCA]TA[AC]C[CA]A[CAT][TC][TGA][CG][GA][CG][CT][AC][AT][AC] -------------------------------------------------------------------------------- Time 677.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CNGTGGCTYAGTGGTAGAGCBYWVGRYTSC MEME-3 width = 30 sites = 16 llr = 392 E-value = 4.5e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif CNGTGGCTYAGTGGTAGAGCBYWVGRYTSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 231:1::::a3:::19373:1:43:6:::1 pos.-specific C 63::::816::::::::3:73414316:47 probability G 238:9a:31:7:aa::718132:373::42 matrix T :21a::364::a::911::34451::4a2: bits 2.4 * ** 2.1 * ** 1.9 * ** 1.7 *** * *** * Relative 1.4 **** * *** * * * * Entropy 1.2 ***** ******* ** * ** * (35.4 bits) 0.9 * ***** ********* ** * ** * 0.7 * ****************** ****** 0.5 * ****************** ** ****** 0.2 * **************************** 0.0 ------------------------------ Multilevel CGGTGGCTCAGTGGTAGAGCTTTCGACTCC consensus A TGT A ACATCCAACGT G sequence C G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNGTGGCTYAGTGGTAGAGCBYWVGRYTSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:379116-379593 - 71 8.96e-17 . CGGTGGCTCAATGGTAGAGCTTTCGACTCC AATTAAATCT chrXI:302731-303193 + 10 8.96e-17 AAGATGAAG CGGTGGCTCAATGGTAGAGCTTTCGACTCC AATTAAATCT chrX:415757-415857 - 60 8.96e-17 AAAGTTGAAG CGGTGGCTCAATGGTAGAGCTTTCGACTCC AATTAAATCT chrVII:878601-879003 - 30 8.96e-17 CAAGATGAAG CGGTGGCTCAATGGTAGAGCTTTCGACTCC AATTAAATCT chrVII:287240-287647 - 29 8.96e-17 CAAGATGAAG CGGTGGCTCAATGGTAGAGCTTTCGACTCC AATTAAATCT chrIII:149729-150173 + 23 2.51e-13 ATGTTGAGCG CCGTGGCGCAGTGGAAGCGCGCAGGGCTCA TAACCCTGAT chrX:517665-517765 - 42 2.51e-13 AAGTTAAGCG CCGTGGCGCAGTGGAAGCGCGCAGGGCTCA TAACCCTGAT chrVIII:466817-467256 + 8 1.57e-11 TTAGCCT CCTTAGCTTAGTGGTAGAGCGTTGCACTTG TAATGCAAAG chrVII:661561-661919 + 63 1.57e-11 AAATTTGCCT CCTTAGCTTAGTGGTAGAGCGTTGCACTTG TAATGCAA chrXVI:775668-776004 - 17 1.84e-11 TCAAAAGCTC GTATGGCGCAGTGGTAGCGCAGCAGATTGC AAATCTGTTG chrII:642867-643238 - 43 1.84e-11 TAGAAAGCTC GTATGGCGCAGTGGTAGCGCAGCAGATTGC AAATCTGTTG chrVII:930860-931164 - 28 9.55e-11 CAGTAAGCGC AAGTGGTTTAGTGGTAAAATCCAACGTTGC CATCGTTGGG chrX:396605-396705 - 41 9.55e-11 AAGTAAGCGC AAGTGGTTTAGTGGTAAAATCCAACGTTGC CATCGTTGGG chrXVI:860196-860651 + 10 9.55e-11 AACAAGCGC AAGTGGTTTAGTGGTAAAATCCAACGTTGC CATCGTTGGG chrIV:1150728-1151106 - 41 5.20e-10 GTTTCAGTCC CAGTGGCCGAGTGGTTAAGGCGATGCCTGC TATTTCCTCA chrXII:92415-92720 + 35 2.52e-09 TAATAAGGGC GTGTGGTCTAGTGGTATGATTCTCGCTTTG GGCGACTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNGTGGCTYAGTGGTAGAGCBYWVGRYTSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:379116-379593 9e-17 70_[-3] chrXI:302731-303193 9e-17 9_[+3]_61 chrX:415757-415857 9e-17 59_[-3]_11 chrVII:878601-879003 9e-17 29_[-3]_41 chrVII:287240-287647 9e-17 28_[-3]_42 chrIII:149729-150173 2.5e-13 22_[+3]_48 chrX:517665-517765 2.5e-13 41_[-3]_29 chrVIII:466817-467256 1.6e-11 7_[+3]_63 chrVII:661561-661919 1.6e-11 62_[+3]_8 chrXVI:775668-776004 1.8e-11 16_[-3]_54 chrII:642867-643238 1.8e-11 42_[-3]_28 chrVII:930860-931164 9.5e-11 27_[-3]_43 chrX:396605-396705 9.5e-11 40_[-3]_30 chrXVI:860196-860651 9.5e-11 9_[+3]_61 chrIV:1150728-1151106 5.2e-10 40_[-3]_30 chrXII:92415-92720 2.5e-09 34_[+3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNGTGGCTYAGTGGTAGAGCBYWVGRYTSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CNGTGGCTYAGTGGTAGAGCBYWVGRYTSC width=30 seqs=16 chrXIII:379116-379593 ( 71) CGGTGGCTCAATGGTAGAGCTTTCGACTCC 1 chrXI:302731-303193 ( 10) CGGTGGCTCAATGGTAGAGCTTTCGACTCC 1 chrX:415757-415857 ( 60) CGGTGGCTCAATGGTAGAGCTTTCGACTCC 1 chrVII:878601-879003 ( 30) CGGTGGCTCAATGGTAGAGCTTTCGACTCC 1 chrVII:287240-287647 ( 29) CGGTGGCTCAATGGTAGAGCTTTCGACTCC 1 chrIII:149729-150173 ( 23) CCGTGGCGCAGTGGAAGCGCGCAGGGCTCA 1 chrX:517665-517765 ( 42) CCGTGGCGCAGTGGAAGCGCGCAGGGCTCA 1 chrVIII:466817-467256 ( 8) CCTTAGCTTAGTGGTAGAGCGTTGCACTTG 1 chrVII:661561-661919 ( 63) CCTTAGCTTAGTGGTAGAGCGTTGCACTTG 1 chrXVI:775668-776004 ( 17) GTATGGCGCAGTGGTAGCGCAGCAGATTGC 1 chrII:642867-643238 ( 43) GTATGGCGCAGTGGTAGCGCAGCAGATTGC 1 chrVII:930860-931164 ( 28) AAGTGGTTTAGTGGTAAAATCCAACGTTGC 1 chrX:396605-396705 ( 41) AAGTGGTTTAGTGGTAAAATCCAACGTTGC 1 chrXVI:860196-860651 ( 10) AAGTGGTTTAGTGGTAAAATCCAACGTTGC 1 chrIV:1150728-1151106 ( 41) CAGTGGCCGAGTGGTTAAGGCGATGCCTGC 1 chrXII:92415-92720 ( 35) GTGTGGTCTAGTGGTATGATTCTCGCTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNGTGGCTYAGTGGTAGAGCBYWVGRYTSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 12.1152 E= 4.5e-047 -71 169 -4 -1064 -29 37 69 -71 -129 -1064 195 -129 -1064 -1064 -1064 170 -129 -1064 218 -1064 -1064 -1064 237 -1064 -1064 195 -1064 -29 -1064 -63 37 103 -1064 154 -163 29 170 -1064 -1064 -1064 3 -1064 183 -1064 -1064 -1064 -1064 170 -1064 -1064 237 -1064 -1064 -1064 237 -1064 -129 -1064 -1064 151 161 -1064 -1064 -229 -29 -1064 183 -229 116 37 -163 -1064 -29 -1064 195 -1064 -1064 183 -163 -29 -129 37 37 29 -1064 95 -4 51 29 -63 -1064 71 3 95 37 -229 -1064 69 183 -1064 88 -63 69 -1064 -1064 169 -1064 29 -1064 -1064 -1064 170 -1064 118 95 -71 -129 183 -4 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNGTGGCTYAGTGGTAGAGCBYWVGRYTSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 16 E= 4.5e-047 0.187500 0.625000 0.187500 0.000000 0.250000 0.250000 0.312500 0.187500 0.125000 0.000000 0.750000 0.125000 0.000000 0.000000 0.000000 1.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.125000 0.250000 0.625000 0.000000 0.562500 0.062500 0.375000 1.000000 0.000000 0.000000 0.000000 0.312500 0.000000 0.687500 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.000000 0.875000 0.937500 0.000000 0.000000 0.062500 0.250000 0.000000 0.687500 0.062500 0.687500 0.250000 0.062500 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.687500 0.062500 0.250000 0.125000 0.250000 0.250000 0.375000 0.000000 0.375000 0.187500 0.437500 0.375000 0.125000 0.000000 0.500000 0.312500 0.375000 0.250000 0.062500 0.000000 0.312500 0.687500 0.000000 0.562500 0.125000 0.312500 0.000000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.437500 0.375000 0.187500 0.125000 0.687500 0.187500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNGTGGCTYAGTGGTAGAGCBYWVGRYTSC MEME-3 regular expression -------------------------------------------------------------------------------- C[GAC]GTGG[CT][TG][CT]A[GA]TGGTA[GA][AC][GA][CT][TCG][TC][TA][CAG][GC][AG][CT]T[CG]C -------------------------------------------------------------------------------- Time 995.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:332356-334155 3.73e-01 100 chrVIII:225332-226787 7.55e-02 100 chrXV:159215-160697 3.54e-01 100 chrVII:122062-122775 2.94e-01 100 chrXI:334046-334971 2.54e-01 100 chrI:130756-132059 2.47e-01 100 chrIV:1175746-1176061 2.04e-06 12_[-1(5.66e-10)]_59 chrXVI:819343-821193 5.33e-01 100 chrXIII:759809-763031 6.50e-01 100 chrVII:437245-438391 5.15e-01 100 chrVII:319273-320121 4.37e-01 100 chrXI:519467-521492 5.23e-01 100 chrIV:519660-519908 5.77e-12 14_[-2(1.33e-09)]_23_[+1(8.62e-09)]_\ 6 chrIII:48646-50103 2.39e-01 100 chrXVI:451572-453202 7.76e-01 100 chrIV:808534-810412 1.76e-03 47_[-2(1.27e-05)]_25 chrXII:47519-49114 5.05e-01 100 chrIX:190665-192880 6.90e-01 100 chrXIV:623895-624970 9.89e-01 100 chrIV:645037-645356 1.39e-13 13_[+1(5.35e-12)]_3_[+2(2.11e-08)]_\ 27 chrXII:544162-545850 4.51e-01 100 chrIX:174893-175193 1.22e-08 42_[-2(1.86e-12)]_30 chrII:172857-174561 4.82e-02 100 chrXI:576282-577824 6.94e-01 100 chrXVI:252042-253998 2.96e-01 100 chrVII:315780-317363 4.26e-01 100 chrXV:882719-884223 8.18e-01 100 chrXII:242209-243520 3.78e-01 100 chrVII:788365-788708 1.62e-01 100 chrXV:961057-967584 8.51e-01 100 chrXIII:221598-223824 8.20e-01 100 chrV:61075-62141 3.45e-01 100 chrXVI:622366-622813 1.77e-13 7_[+1(1.94e-10)]_23_[+2(1.62e-10)]_\ 13 chrII:372093-372614 1.22e-01 100 chrIV:491467-492869 8.90e-01 100 chrXV:832347-832709 9.44e-01 100 chrIV:568708-569224 4.31e-10 1_[-1(9.35e-11)]_22_[-2(3.79e-05)]_\ 20 chrXIII:887019-892207 4.68e-01 100 chrVI:210464-210896 2.01e-03 20_[+3(3.69e-05)]_50 chrXII:837658-839379 1.84e-01 100 chrVIII:147863-148722 3.68e-01 100 chrX:517665-517765 4.39e-15 10_[+1(3.45e-09)]_2_[-3(2.51e-13)]_\ 29 chrVII:205322-205741 9.39e-04 45_[-2(6.40e-07)]_27 chrVIII:298970-300707 5.17e-01 100 chrXII:951057-953884 7.50e-01 100 chrXIII:352116-352619 2.89e-06 17_[-1(1.94e-10)]_54 chrXIV:352330-352924 9.13e-01 100 chrXIV:783916-784318 3.87e-01 100 chrVII:287240-287647 2.43e-13 28_[-3(8.96e-17)]_42 chrXVI:768571-769467 4.65e-01 100 chrXIII:145941-146233 4.68e-02 48_[+2(3.40e-05)]_24 chrIV:1236471-1238463 2.48e-01 100 chrXV:797677-798805 1.44e-01 100 chrXIII:296738-298838 4.61e-01 100 chrVII:794161-794567 4.90e-01 100 chrXII:41341-44463 8.66e-01 100 chrX:342814-342914 6.10e-01 100 chrVI:82535-84686 6.98e-01 100 chrXVI:352634-355322 9.88e-01 100 chrV:465382-466056 3.71e-01 100 chrXI:336411-338681 8.59e-01 100 chrXII:925835-927933 8.31e-01 100 chrXII:109575-111432 8.17e-01 100 chrXI:69797-70251 3.93e-01 100 chrV:78062-79828 4.45e-01 100 chrIV:563795-565230 3.19e-01 100 chrVII:23943-26420 6.18e-01 100 chrXIII:425198-429060 5.51e-01 100 chrXIV:215249-216988 8.66e-01 100 chrXIII:123207-124183 9.34e-01 100 chrXII:592373-592810 1.55e-07 44_[+2(7.93e-10)]_28 chrVII:855348-856160 4.33e-01 100 chrXI:125700-125942 5.15e-01 100 chrXI:590666-592366 7.30e-01 100 chrXIII:18978-20509 7.79e-01 100 chrII:563164-564550 7.29e-01 100 chrV:91119-93984 8.89e-01 100 chrXII:498516-500168 4.18e-01 100 chrIV:619746-620173 1.05e-05 66_[+1(2.71e-09)]_5 chrXII:241679-241964 9.64e-01 100 chrVI:223957-225272 1.00e+00 100 chrXVI:520142-520492 8.31e-01 100 chrV:414707-415713 3.65e-01 100 chrXIV:721127-723196 9.94e-02 100 chrVII:661561-661919 2.09e-07 62_[+3(1.57e-11)]_8 chrXII:440477-441646 1.37e-02 8_[+2(5.40e-06)]_64 chrXVI:445799-450228 4.48e-01 100 chrII:236553-237354 8.86e-01 100 chrXV:1060290-1061001 3.31e-01 100 chrVII:899647-901390 2.86e-01 100 chrV:510441-512370 2.78e-01 100 chrX:703290-703390 7.88e-02 38_[-3(7.16e-05)]_32 chrXVI:136373-136668 7.42e-01 100 chrVII:648779-649399 6.23e-01 100 chrXV:253852-254072 5.38e-01 100 chrVII:531414-532071 2.90e-01 100 chrXVI:338757-339131 9.59e-01 100 chrXII:582000-585045 3.13e-01 100 chrXVI:802502-804144 7.45e-01 100 chrVIII:144334-146449 2.43e-02 100 chrV:266275-268132 9.90e-01 100 chrXII:44627-44869 5.62e-01 100 chrXVI:639933-641128 5.44e-01 100 chrXIII:40211-40594 8.80e-01 100 chrXII:327803-329104 8.01e-01 100 chrXVI:745440-746729 4.55e-01 100 chrII:768797-770409 6.78e-01 100 chrXVI:878983-880548 1.47e-01 100 chrXIII:56732-57701 3.91e-01 100 chrI:76579-79594 3.59e-01 100 chrII:462786-465576 2.12e-01 100 chrIV:1016961-1017468 8.79e-10 49_[+1(1.20e-13)]_22 chrV:249787-250493 3.82e-02 100 chrV:435634-436007 3.97e-08 21_[+2(1.26e-11)]_51 chrIV:1421746-1422466 3.16e-01 100 chrXVI:897298-899524 8.75e-02 100 chrXV:710125-710503 9.42e-01 100 chrXII:947241-948398 3.96e-01 100 chrIV:915404-916271 3.45e-02 100 chrXV:547485-549252 3.28e-01 100 chrVII:439023-439886 3.65e-01 100 chrXIII:625855-627346 3.91e-01 100 chrVII:959914-961624 2.39e-01 100 chrIV:149250-155671 6.29e-02 100 chrV:27648-29891 7.84e-01 100 chrVII:254139-254722 5.83e-01 100 chrXVI:108620-114578 5.50e-01 100 chrI:142168-143606 6.46e-01 100 chrXV:945960-948801 9.31e-02 100 chrII:547939-548672 8.71e-01 100 chrVII:338386-341802 6.16e-01 100 chrX:165718-165818 8.68e-01 100 chrIII:229587-231190 9.58e-01 100 chrXII:201669-202669 2.11e-01 100 chrII:415551-415945 3.64e-01 100 chrIV:308028-310131 5.58e-01 100 chrXIV:444504-444774 9.14e-01 100 chrIV:489678-491223 4.17e-02 100 chrVII:251344-253174 4.06e-01 100 chrXI:311410-313993 1.85e-01 100 chrXI:163350-164418 5.36e-01 100 chrIX:128192-129903 1.09e-01 100 chrXI:394728-395910 8.78e-01 100 chrXV:812155-813368 4.31e-01 100 chrX:139166-139266 5.05e-01 100 chrXIII:623609-624325 1.13e-01 100 chrVII:115346-115725 1.72e-14 7_[-2(3.29e-10)]_27_[-1(3.43e-11)]_\ 9 chrX:296734-296834 6.97e-01 100 chrX:542803-542903 6.62e-02 100 chrVII:730975-731426 6.03e-05 24_[-1(6.41e-09)]_47 chrXIV:24148-27595 2.24e-01 100 chrIII:127547-127871 1.13e-04 62_[-2(1.24e-08)]_10 chrXIII:480426-480809 2.26e-07 60_[+1(2.41e-11)]_11 chrXII:1017759-1019398 4.20e-01 100 chrVII:878601-879003 2.08e-13 29_[-3(8.96e-17)]_41 chrIX:68276-68474 9.92e-01 100 chrIV:472617-473207 5.82e-01 100 chrVIII:174822-175412 3.72e-01 100 chrXVI:432535-434338 2.27e-01 100 chrXII:366067-367510 1.75e-01 100 chrVII:736204-737045 9.61e-01 100 chrII:197289-197825 1.60e-09 24_[-1(3.11e-12)]_47 chrV:130811-131324 2.02e-07 71_[+1(1.16e-11)] chrV:483339-484064 1.98e-02 64_[-3(3.03e-05)]_6 chrIII:64705-65362 9.50e-01 100 chrXII:253875-255268 1.56e-01 100 chrXII:934411-936965 6.00e-01 100 chrVII:779420-779919 1.80e-08 1_[-2(2.50e-05)]_3_[-1(3.87e-10)]_\ 39 chrIV:392543-393030 8.28e-03 1_[-2(6.27e-05)]_71 chrXV:110207-110696 3.18e-01 100 chrVIII:358307-358736 1.77e-13 13_[+1(1.94e-10)]_23_[+2(1.62e-10)]_\ 7 chrXV:199843-201808 9.75e-01 100 chrXI:140807-142803 2.18e-01 100 chrXIV:96025-96455 5.23e-06 57_[+1(3.87e-10)]_14 chrVII:738890-739515 7.26e-09 7_[-1(3.11e-12)]_64 chrXIV:510641-512409 2.33e-01 100 chrVIII:562392-562589 2.96e-01 100 chrXIV:416414-417274 6.23e-01 100 chrVIII:466817-467256 3.14e-12 7_[+3(1.57e-11)]_2_[-1(2.00e-08)]_\ 32 chrII:626353-628269 8.29e-01 100 chrII:301085-301635 7.81e-01 100 chrXVI:821659-822147 9.18e-01 100 chrIX:217071-219709 3.54e-02 100 chrVII:740186-741649 3.55e-01 100 chrIII:280658-286453 1.75e-03 61_[-3(5.88e-05)]_9 chrXV:779746-780960 8.59e-01 100 chrX:414811-414911 8.44e-01 100 chrXV:80355-81484 3.33e-01 100 chrVIII:422919-423523 6.09e-01 100 chrXII:445068-447463 6.55e-01 100 chrXII:282850-283990 3.89e-01 100 chrI:166174-168134 9.62e-01 100 chrXII:713163-713564 6.59e-01 100 chrXI:326074-327551 3.06e-01 100 chrXVI:173004-174104 9.75e-01 100 chrVII:611819-615868 2.92e-01 100 chrXIV:740156-742369 7.79e-01 100 chrX:90789-90889 8.62e-01 100 chrIV:691609-692817 6.91e-01 100 chrVIII:382938-383321 3.92e-01 100 chrXV:28433-33791 5.80e-03 70_[+3(2.77e-05)] chrXIII:731854-733383 7.72e-01 100 chrXII:1028241-1028529 3.49e-01 100 chrXIV:442800-444283 5.10e-01 100 chrVI:157898-158184 9.95e-01 100 chrXI:261105-262035 3.00e-01 100 chrIX:212684-214731 2.72e-01 100 chrI:71736-73665 4.20e-01 100 chrV:492215-492559 6.82e-12 21_[+1(2.71e-09)]_4_[+2(8.98e-09)]_\ 18 chrXIV:501209-502818 5.39e-02 39_[-3(6.57e-05)]_31 chrXVI:498108-499310 2.37e-02 36_[-3(9.42e-06)]_34 chrXII:784014-784508 3.10e-01 100 chrIV:667790-668229 1.60e-09 54_[+1(3.11e-12)]_17 chrIV:45146-46172 5.66e-03 20_[+3(3.09e-05)]_50 chrIII:216998-218766 9.93e-01 100 chrXII:796442-796829 3.32e-01 100 chrXII:780648-781856 1.97e-01 100 chrIII:32025-34244 7.70e-01 100 chrXI:217548-218391 3.77e-01 100 chrXV:228126-228523 1.10e-05 62_[-2(1.24e-08)]_10 chrXIII:484149-486140 8.40e-01 100 chrX:259259-259359 8.77e-01 100 chrII:228489-235788 3.22e-01 100 chrXVI:100633-101388 8.70e-01 100 chrVIII:141683-143267 6.91e-01 100 chrXIII:632460-634805 6.79e-01 100 chrIX:300107-300456 2.08e-15 3_[+1(2.41e-11)]_4_[+2(1.26e-11)]_\ 36 chrXII:506216-507616 1.42e-01 100 chrV:163054-164348 8.11e-01 100 chrIV:1006054-1007286 5.67e-01 100 chrV:434397-434979 4.87e-02 16_[+2(6.97e-05)]_56 chrXV:909207-911510 5.93e-01 100 chrIV:769702-770059 4.16e-01 100 chrII:256304-257638 9.16e-02 100 chrXI:430654-431196 9.21e-01 100 chrIX:219884-220557 9.25e-01 100 chrXIII:23898-25750 4.30e-01 100 chrV:354734-355189 4.33e-14 27_[-2(1.14e-08)]_3_[-1(3.88e-13)]_\ 13 chrXIII:251684-252937 8.43e-01 100 chrXIII:837774-838220 1.54e-07 33_[-1(8.93e-10)]_38 chrX:647639-647739 8.23e-01 100 chrXI:84004-84431 1.41e-07 46_[-2(1.33e-09)]_26 chrIV:1351881-1353042 9.70e-08 61_[+1(2.41e-11)]_10 chrV:51839-53251 9.94e-01 100 chrXV:438481-440228 9.98e-01 100 chrV:101008-101615 9.90e-01 100 chrXVI:731944-732277 3.39e-01 100 chrVII:479151-482757 8.37e-01 100 chrXV:507769-511025 2.76e-01 100 chrVIII:388687-388997 5.46e-01 100 chrX:374208-374308 3.97e-03 23_[+2(3.79e-05)]_49 chrIII:168152-168506 1.39e-13 28_[+1(5.35e-12)]_3_[+2(2.11e-08)]_\ 12 chrIV:204983-210570 2.71e-01 100 chrXII:797012-797419 4.33e-14 17_[-2(1.14e-08)]_3_[-1(3.88e-13)]_\ 23 chrXII:636729-640202 8.51e-02 100 chrIV:589800-591245 6.29e-01 100 chrXVI:701311-701468 8.79e-02 100 chrXVI:310472-312843 1.40e-01 100 chrX:415757-415857 2.43e-13 59_[-3(8.96e-17)]_11 chrXII:823661-826201 1.47e-01 100 chrXV:472830-473743 1.65e-01 100 chrIV:1081014-1082344 4.82e-01 100 chrXVI:75481-77298 5.80e-02 100 chrXVI:107657-108305 3.72e-01 100 chrII:59858-61232 1.10e-01 100 chrIV:1328813-1330956 3.82e-01 100 chrXVI:581874-582279 1.17e-07 40_[-2(1.26e-11)]_32 chrII:373537-375798 8.65e-01 100 chrXIV:282189-283717 4.95e-01 100 chrIV:70690-71689 6.74e-01 100 chrX:617719-617819 1.55e-07 52_[-2(7.93e-10)]_20 chrIV:1162630-1164603 5.01e-02 100 chrIV:83433-83808 1.05e-11 12_[-1(4.55e-13)]_59 chrVII:555175-556691 8.30e-01 100 chrXVI:139694-142750 6.84e-01 100 chrV:305816-306163 9.70e-01 100 chrV:413063-413890 2.17e-01 100 chrIV:434024-434843 6.38e-01 100 chrXIII:67667-67960 5.38e-02 100 chrI:63558-67703 1.00e+00 100 chrII:284393-287559 2.27e-01 100 chrXIV:569726-570075 2.65e-14 23_[+1(3.11e-12)]_4_[+2(8.98e-09)]_\ 16 chrXI:617689-618611 3.55e-02 100 chrVII:281721-283623 3.33e-01 100 chrXII:97075-97509 4.43e-01 100 chrV:311756-312283 2.11e-07 60_[+1(5.41e-11)]_11 chrVII:726451-726725 7.22e-01 100 chrX:120430-120530 9.88e-01 100 chrV:406545-408992 6.29e-01 100 chrXI:382717-384580 1.09e-01 100 chrVII:277077-277360 2.05e-01 100 chrXIV:253181-254152 1.63e-02 7_[+3(3.09e-05)]_63 chrV:48018-50359 7.87e-01 100 chrXVI:302679-302908 8.85e-01 100 chrII:644964-645405 4.33e-14 37_[-2(1.14e-08)]_3_[-1(3.88e-13)]_\ 3 chrXII:579263-581324 9.25e-01 100 chrXII:232043-234213 9.30e-01 100 chrXV:594314-594632 9.63e-01 100 chrXV:410878-412516 4.85e-01 100 chrXIV:626038-626972 8.04e-01 100 chrXV:1027889-1030924 2.78e-01 100 chrV:396213-396543 9.40e-01 100 chrXII:707973-710141 3.91e-01 100 chrVII:649579-650541 6.74e-02 100 chrXII:92415-92720 1.81e-05 34_[+3(2.52e-09)]_36 chrIV:1150728-1151106 1.08e-08 40_[-3(5.20e-10)]_30 chrXI:302731-303193 2.43e-13 9_[+3(8.96e-17)]_61 chrVIII:237754-238112 4.23e-07 23_[+2(1.62e-10)]_49 chrV:288223-288721 2.10e-10 69_[+2(6.36e-13)]_3 chrVII:1048673-1049879 5.46e-01 100 chrXII:919137-924143 4.67e-01 100 chrVI:95497-95825 3.95e-02 100 chrXVI:151460-152145 9.17e-01 100 chrV:102031-102708 1.00e+00 100 chrV:205367-206977 6.73e-01 100 chrII:680364-681929 4.87e-02 100 chrX:381404-381504 9.67e-01 100 chrVII:1061544-1062909 7.32e-01 100 chrX:233733-233833 8.54e-01 100 chrXIII:865520-866826 6.40e-01 100 chrV:138480-140858 4.27e-01 100 chrXI:219703-220097 6.81e-07 49_[-2(5.41e-09)]_23 chrX:453345-453445 7.88e-02 100 chrXIII:504922-505180 5.66e-01 100 chrXVI:213009-214000 2.12e-01 100 chrIV:1169759-1170560 5.43e-01 100 chrVIII:462807-463740 3.37e-01 100 chrXV:908441-909027 1.90e-01 100 chrIV:1245565-1246156 1.00e+00 100 chrXIV:104616-105582 8.54e-01 100 chrXIV:417662-418376 6.51e-01 100 chrXIII:701933-703629 1.04e-02 100 chrIV:632160-635509 1.29e-01 100 chrVII:824439-827339 8.67e-01 100 chrXV:464308-464785 5.84e-07 19_[-1(4.69e-10)]_52 chrIV:626304-628547 3.16e-01 100 chrXIII:225385-225678 8.96e-01 100 chrXV:827643-830573 6.98e-01 100 chrXI:42475-46300 6.49e-02 100 chrIV:44059-44564 3.25e-02 100 chrXIII:83287-85849 1.94e-01 100 chrXII:522619-523605 1.69e-01 100 chrXIII:170386-171448 4.65e-01 100 chrXII:888786-892385 6.44e-01 100 chrIV:1489063-1489924 9.97e-01 100 chrXV:217244-218439 6.88e-01 100 chrXVI:642251-643418 6.35e-01 100 chrVII:970413-973721 4.38e-01 100 chrV:53556-53995 9.45e-01 100 chrXIII:861221-861379 8.94e-01 100 chrXV:819175-820413 8.33e-01 100 chrVII:345925-346624 5.50e-01 100 chrXI:158244-159637 9.96e-01 100 chrIV:364211-364827 4.94e-01 100 chrIV:331064-333349 1.51e-01 100 chrXII:374219-374688 9.76e-02 100 chrXV:87455-89401 2.53e-01 100 chrVII:906023-908766 3.75e-01 100 chrII:9468-9971 9.46e-01 100 chrII:80881-84082 9.17e-01 100 chrV:362721-363291 9.84e-01 100 chrIV:520753-521114 1.05e-02 100 chrIV:1269970-1271100 5.06e-01 100 chrXVI:718373-719485 1.11e-01 100 chrIV:465930-470743 9.76e-01 100 chrXII:459636-460678 5.16e-01 100 chrXVI:786250-787726 9.33e-01 100 chrIII:177128-178194 7.96e-01 100 chrXIV:276557-279889 9.38e-01 100 chrXV:1041681-1042899 1.61e-01 100 chrXV:252830-253596 3.67e-02 100 chrI:169467-170910 9.87e-01 100 chrVII:255178-255632 5.60e-01 100 chrII:491110-492455 2.95e-01 100 chrXII:296630-299875 7.27e-01 100 chrXIV:376345-378505 3.87e-01 100 chrVIII:113436-114669 4.93e-01 100 chrIV:1305448-1305782 1.05e-09 69_[-2(1.44e-10)]_3 chrVIII:115593-116364 9.41e-01 100 chrVIII:475563-475903 1.14e-10 29_[+1(2.89e-10)]_4_[+2(4.99e-07)]_\ 10 chrXII:399704-400471 5.65e-01 100 chrVIII:239380-241336 4.13e-02 100 chrII:392959-398141 4.03e-02 100 chrVIII:119646-121690 1.92e-01 100 chrXV:866582-868078 9.00e-01 100 chrXII:663015-664894 9.86e-01 100 chrII:187565-190795 6.53e-01 100 chrX:651272-651372 6.72e-01 100 chrXII:257597-259492 3.01e-01 100 chrVII:695608-697626 9.80e-01 100 chrX:59018-59118 1.85e-08 15_[+2(1.86e-12)]_57 chrXII:735253-737106 7.85e-01 100 chrIII:82386-82643 4.33e-14 4_[+1(3.88e-13)]_3_[+2(1.14e-08)]_\ 36 chrIX:336126-336602 9.09e-02 100 chrVIII:505857-506192 9.28e-01 100 chrX:540973-541073 1.68e-03 64_[-2(3.79e-05)]_8 chrXVI:700484-700720 9.34e-01 100 chrXIV:108451-109709 1.00e+00 100 chrII:168397-169648 3.09e-01 100 chrVII:541723-542148 9.84e-09 [-1(3.88e-13)]_71 chrXIII:379116-379593 3.42e-18 5_[+1(4.04e-09)]_36_[-3(8.96e-17)] chrXVI:461510-461694 3.78e-01 100 chrV:438543-438955 1.23e-10 6_[-2(8.55e-08)]_4_[-1(1.75e-10)]_\ 33 chrXV:92722-94750 9.20e-01 100 chrXIII:321020-321309 1.33e-10 39_[+1(1.15e-08)]_4_[+2(5.41e-09)] chrIV:946148-946601 2.56e-07 40_[-1(8.93e-10)]_31 chrXV:978875-979077 2.56e-02 100 chrIII:853-1052 2.64e-01 100 chrXIII:873843-874034 4.10e-01 100 chrXVI:247087-250568 6.25e-02 26_[-2(2.96e-05)]_46 chrVII:846896-848318 3.16e-01 100 chrXIV:632437-632873 5.14e-05 31_[-1(6.41e-09)]_40 chrX:411260-411360 4.66e-01 100 chrVII:1054149-1058666 2.56e-01 100 chrVIII:148985-149224 5.47e-01 100 chrIV:720590-721518 9.95e-01 100 chrV:460478-461522 1.02e-01 63_[+1(5.15e-05)]_8 chrIV:541310-541870 4.92e-01 100 chrX:208059-208159 5.91e-01 100 chrXIII:511233-512354 8.64e-01 100 chrXV:487437-487728 1.54e-01 100 chrIV:427541-428727 1.94e-01 100 chrIV:992727-993182 1.90e-01 100 chrIV:437568-438038 9.82e-10 23_[-2(1.44e-10)]_49 chrXVI:699915-700333 2.14e-01 100 chrIII:149729-150173 4.39e-15 22_[+3(2.51e-13)]_2_[-1(3.45e-09)]_\ 17 chrIII:295321-295818 1.89e-06 1_[-1(1.27e-09)]_70 chrXII:897722-900095 6.72e-01 100 chrII:642867-643238 9.11e-13 11_[+1(2.28e-08)]_2_[-3(1.84e-11)]_\ 28 chrXII:214709-215057 2.11e-07 56_[+1(5.41e-11)]_15 chrX:196788-196888 8.20e-01 100 chrXII:1029115-1030156 7.73e-03 100 chrIV:757499-758279 8.61e-01 100 chrVII:405466-405790 2.01e-01 100 chrXII:1031239-1032070 4.78e-01 100 chrII:412333-415233 6.28e-01 100 chrXI:551860-552425 1.59e-01 100 chrIX:255102-257085 2.91e-01 100 chrII:226976-227333 8.78e-01 100 chrXVI:857811-859926 5.93e-01 100 chrXII:930488-931836 5.20e-01 100 chrXIV:725938-726367 7.03e-05 29_[-1(8.62e-09)]_42 chrVII:519346-521260 9.48e-03 4_[-3(6.42e-05)]_66 chrXV:254297-254770 9.99e-01 100 chrXII:903830-904807 3.29e-01 100 chrXVI:860196-860651 3.02e-17 9_[+3(9.55e-11)]_1_[-1(4.55e-13)]_\ 31 chrXIII:754458-755813 6.70e-01 100 chrXII:605161-605589 4.41e-01 100 chrVII:307580-308837 1.40e-01 100 chrXIII:161777-162700 5.00e-01 100 chrXIII:892807-895511 8.50e-01 100 chrXIV:504884-506764 8.47e-01 100 chrXI:109262-111190 4.32e-01 100 chrVII:148159-149473 7.76e-01 100 chrVIII:381494-382469 3.92e-01 100 chrXIV:576693-577533 9.69e-01 100 chrXV:353927-354289 1.85e-08 22_[+2(1.86e-12)]_50 chrXIII:220070-220930 9.34e-02 100 chrXIII:507050-509157 1.84e-01 100 chrXIII:91824-92086 3.75e-01 100 chrXV:778589-779430 5.23e-01 100 chrXIII:557405-558413 8.40e-01 100 chrX:115879-115979 7.62e-01 100 chrVIII:80143-81330 6.61e-01 100 chrXV:571761-572121 2.54e-03 71_[-2(3.79e-05)]_1 chrII:712541-714162 7.95e-02 100 chrX:378232-378332 3.48e-11 15_[-2(8.55e-08)]_4_[-1(1.75e-10)]_\ 24 chrVII:533666-535178 7.21e-01 100 chrXI:513230-513592 6.10e-04 9_[+2(3.79e-05)]_63 chrIV:600730-602350 7.47e-01 100 chrV:256465-257533 4.61e-03 1_[+3(2.66e-06)]_69 chrIII:84-588 3.38e-01 100 chrXI:202493-203058 4.55e-01 100 chrXII:793785-795402 9.73e-01 100 chrXV:663527-664065 4.36e-01 100 chrIV:1301572-1302547 4.21e-01 100 chrII:347442-347894 7.03e-05 41_[+1(8.62e-09)]_30 chrIV:359377-359763 2.97e-07 61_[-2(3.29e-10)]_11 chrXVI:689404-689831 2.32e-10 2_[-2(6.36e-13)]_70 chrXI:364574-365228 6.97e-01 100 chrXVI:577075-581185 9.27e-01 100 chrIII:220295-223082 1.97e-01 100 chrIII:102016-103304 8.50e-01 100 chrIV:655406-657147 1.60e-01 100 chrV:281974-284205 9.02e-01 100 chrXVI:775668-776004 7.63e-08 16_[-3(1.84e-11)]_54 chrXIII:300180-302435 9.67e-01 100 chrVI:137288-137690 6.03e-05 53_[+1(6.41e-09)]_18 chrXIII:768202-768434 9.89e-01 100 chrV:99900-100299 5.99e-01 100 chrXIV:715988-718318 2.91e-01 100 chrX:651894-651994 6.99e-01 100 chrIV:410182-410774 4.89e-01 100 chrII:162511-163964 3.85e-01 100 chrXV:854018-854744 3.96e-01 100 chrIV:1356525-1357393 4.69e-01 100 chrIV:980753-981151 5.53e-01 100 chrIV:242762-245129 4.32e-01 100 chrIII:163496-163874 2.13e-01 100 chrXVI:297635-298477 6.17e-01 100 chrIV:1359437-1359777 8.57e-01 100 chrXVI:376065-377380 5.91e-01 100 chrXII:673487-674219 3.03e-01 100 chrXIV:575077-576109 5.80e-01 100 chrXII:448537-448939 4.21e-05 [+2(2.11e-08)]_72 chrXIII:225851-226648 3.51e-01 100 chrX:523803-523903 1.15e-09 10_[+2(1.44e-10)]_62 chrVII:371185-371479 3.39e-01 100 chrII:167946-168158 1.72e-02 100 chrXV:678026-679111 1.00e+00 100 chrXIV:374681-375093 9.59e-07 36_[-2(5.75e-10)]_36 chrIV:888108-888938 5.96e-02 100 chrIV:167901-169224 9.68e-01 100 chrXII:734622-734957 3.06e-06 68_[-2(8.98e-09)]_4 chrXV:980165-981004 2.03e-01 100 chrII:290381-291636 7.61e-01 100 chrXVI:64579-66536 1.51e-01 100 chrVII:185372-185895 5.78e-01 100 chrII:350640-350994 1.08e-04 64_[-2(2.11e-08)]_8 chrIV:1090159-1090466 9.43e-01 100 chrXII:798416-801790 2.66e-01 100 chrIV:1239458-1240174 4.96e-01 100 chrV:487038-487539 9.71e-01 100 chrIV:200292-201605 1.81e-01 100 chrXIII:651178-652924 5.16e-01 100 chrXV:505045-505470 5.12e-01 100 chrIX:99677-100018 8.09e-01 100 chrX:366895-366995 3.68e-01 100 chrVII:915462-916825 6.10e-01 100 chrXI:208324-210236 7.33e-01 100 chrVII:88172-89382 4.18e-01 100 chrI:81915-82320 1.32e-01 100 chrVII:364882-366657 9.94e-01 100 chrXI:232783-233921 2.36e-02 52_[-3(7.64e-05)]_18 chrX:75895-75995 4.53e-01 100 chrXIII:372185-372653 9.58e-02 100 chrXIII:290586-291100 4.33e-14 12_[-2(1.14e-08)]_3_[-1(3.88e-13)]_\ 28 chrVI:180698-181231 5.05e-10 66_[+1(4.55e-13)]_5 chrXIV:109875-110187 2.06e-01 100 chrVII:706931-707179 9.07e-01 100 chrVII:672528-675482 5.68e-01 100 chrXIII:532905-534618 9.15e-01 100 chrVII:92827-94024 8.82e-01 100 chrXV:814299-816531 7.72e-01 100 chrIV:579053-580705 4.51e-01 100 chrXII:720595-721338 6.14e-01 100 chrXV:805078-806619 8.68e-01 100 chrXIV:45219-47521 6.20e-01 100 chrXIV:138722-140637 8.32e-01 100 chrXV:900081-901215 8.56e-01 100 chrXV:577549-578006 9.07e-01 100 chrV:431037-431902 9.82e-01 100 chrXI:495319-497348 4.02e-01 100 chrX:390843-390943 3.95e-09 26_[+1(5.66e-10)]_3_[-3(4.41e-05)]_\ 12 chrVII:260330-261699 9.87e-01 100 chrXV:505742-506745 2.38e-01 100 chrX:290876-290976 6.83e-01 100 chrXV:727821-733307 4.74e-01 100 chrXVI:711473-712682 7.21e-01 100 chrXII:628205-628881 9.20e-01 100 chrXVI:868594-869766 1.00e-01 100 chrXII:712293-712708 7.78e-01 100 chrX:73425-73525 2.47e-01 100 chrIX:68697-69899 3.34e-01 100 chrXV:758983-759514 4.71e-01 100 chrIV:1201518-1201949 2.53e-07 71_[-2(1.26e-11)]_1 chrXIII:807980-808531 8.29e-07 47_[+1(7.53e-11)]_24 chrVIII:362121-363235 4.96e-01 100 chrII:602904-603527 3.02e-01 100 chrXII:962816-963251 6.07e-08 38_[+2(1.33e-09)]_34 chrXIV:302669-303885 2.12e-01 100 chrVII:39435-41259 9.45e-01 100 chrXV:612707-616585 8.94e-01 100 chrXIII:498910-500712 2.69e-01 100 chrXI:666636-666792 5.25e-01 100 chrXIV:499340-500749 2.46e-01 100 chrVI:63985-65319 2.45e-01 100 chrV:396721-398092 6.82e-01 100 chrIII:15429-16643 6.38e-01 100 chrXII:546150-547582 1.26e-01 100 chrIX:26940-28508 2.62e-02 70_[+2(3.40e-05)]_2 chrXII:198690-200062 4.71e-01 100 chrX:396605-396705 3.02e-17 10_[+1(4.55e-13)]_1_[-3(9.55e-11)]_\ 30 chrXV:1015202-1017374 1.01e-01 100 chrVII:362309-363901 5.05e-01 100 chrVIII:125801-126277 9.06e-01 100 chrIII:151152-151520 2.08e-15 4_[+1(2.41e-11)]_4_[+2(1.26e-11)]_\ 35 chrV:66934-68890 1.47e-01 100 chrX:123805-123905 1.49e-01 100 chrIX:316786-318329 7.07e-01 100 chrXIV:495241-495972 5.35e-01 100 chrIX:231295-232416 4.79e-01 100 chrXVI:188679-188894 1.10e-01 100 chrXIII:586399-586890 9.26e-07 48_[+1(1.75e-10)]_23 chrXVI:208569-210474 3.71e-01 100 chrVII:786957-788195 3.75e-01 100 chrVII:930860-931164 1.03e-07 27_[-3(9.55e-11)]_43 chrXI:177199-178640 9.91e-01 100 chrXII:875228-877037 1.34e-01 100 chrXV:378565-380115 6.21e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************