******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SRB8/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:65829-66365 1.0000 100 chrI:71808-73282 1.0000 100 chrI:81887-82331 1.0000 100 chrI:130764-131900 1.0000 100 chrI:138955-139369 1.0000 100 chrI:142133-143657 1.0000 100 chrI:166169-166565 1.0000 100 chrI:181122-181477 1.0000 100 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chrXV:778594-779141 1.0000 100 chrXV:779319-779495 1.0000 100 chrXV:779703-780997 1.0000 100 chrXV:795880-797513 1.0000 100 chrXV:797759-798329 1.0000 100 chrXV:854041-854742 1.0000 100 chrXV:866473-868046 1.0000 100 chrXV:901404-901648 1.0000 100 chrXV:968112-968405 1.0000 100 chrXV:976378-976610 1.0000 100 chrXV:978810-979158 1.0000 100 chrXV:979741-981027 1.0000 100 chrXV:1003971-1004649 1.0000 100 chrXV:1025765-1026084 1.0000 100 chrXV:1027903-1029473 1.0000 100 chrXVI:55875-56425 1.0000 100 chrXVI:76371-76753 1.0000 100 chrXVI:135559-135843 1.0000 100 chrXVI:172861-173921 1.0000 100 chrXVI:188360-188938 1.0000 100 chrXVI:209960-210471 1.0000 100 chrXVI:281560-282951 1.0000 100 chrXVI:302644-304288 1.0000 100 chrXVI:338537-339182 1.0000 100 chrXVI:371078-372922 1.0000 100 chrXVI:378674-378995 1.0000 100 chrXVI:405029-405991 1.0000 100 chrXVI:406190-406578 1.0000 100 chrXVI:432580-434389 1.0000 100 chrXVI:435667-436170 1.0000 100 chrXVI:519993-520529 1.0000 100 chrXVI:560026-560485 1.0000 100 chrXVI:572172-572572 1.0000 100 chrXVI:581815-582326 1.0000 100 chrXVI:622375-622843 1.0000 100 chrXVI:642351-643305 1.0000 100 chrXVI:653870-655015 1.0000 100 chrXVI:679066-679350 1.0000 100 chrXVI:689369-689878 1.0000 100 chrXVI:699764-700698 1.0000 100 chrXVI:701873-702301 1.0000 100 chrXVI:718382-720000 1.0000 100 chrXVI:731655-732296 1.0000 100 chrXVI:744062-744528 1.0000 100 chrXVI:768559-769495 1.0000 100 chrXVI:775664-776136 1.0000 100 chrXVI:794494-796237 1.0000 100 chrXVI:810572-811771 1.0000 100 chrXVI:819344-821139 1.0000 100 chrXVI:821655-822169 1.0000 100 chrXVI:856737-857153 1.0000 100 chrXVI:860172-860881 1.0000 100 chrXVI:879841-880563 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SRB8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SRB8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SRB8/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 569 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56900 N= 569 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SRB8/background): A 0.303 C 0.197 G 0.197 T 0.303 ******************************************************************************** ******************************************************************************** MOTIF GGTTCGATYCYSSBHKNGRKCRTTTTTTT MEME-1 width = 29 sites = 92 llr = 1668 E-value = 1.1e-332 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTTCGATYCYSSBHKNGRKCRTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3::::2a2::::2:31213125321111: pos.-specific C ::::a::24a65334222128:1111111 probability G 7a:::8:1:::454:53645:41:::1:1 matrix T ::aa:::56:31:3333213116789888 bits 2.3 2.1 * * * 1.9 * * * 1.6 ** * * * Relative 1.4 **** * * Entropy 1.2 ******* ** * * (26.2 bits) 0.9 ******* *** * * * 0.7 ******* ***** * ***** 0.5 ******* ******** * *** ****** 0.2 ******* ******** ************ 0.0 ----------------------------- Multilevel GGTTCGATTCCCGGCGGGGGCATTTTTTT consensus A A AC TGCTTTT AT GAA sequence CA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGATYCYSSBHKNGRKCRTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIII:142406-142948 - 67 3.84e-13 CCCCC GGTTCGATTCCGGGCTTGCGCATCTTTTT TACTTTATAT chrV:551069-551581 - 3 5.58e-13 GGGGATCAGC GGTTCGATCCCGCTAGAGACCATTTTTTT TG chrII:197286-197838 + 34 5.58e-13 GGGGATCAGC GGTTCGATCCCGCTAGAGACCATTTTTTT GCAATTCAAA chrXV:226407-226899 - 1 9.60e-13 TTGGGCCCCC GGTTCGATTCCGGGCTTGCGCAAATTTTT chrV:443066-443362 - 31 3.16e-12 GGGGATCAGC GGTTCGATCCCGCTAGAGACCATATTTTT TTTGAAAATC chrX:531544-532256 + 27 3.72e-12 TTGGGCCCCC GGTTCGATTCCGGGCTTGCGCAGTTTCTT TTCTTTTTTT chrVI:162039-162598 + 9 3.72e-12 GGGCCCCC GGTTCGATTCCGGGCTTGCGCAGTTTCTT TTTTTTCTGA chrXIV:569679-570090 - 26 5.13e-12 GGGGATCAGC GGTTCGATCCCGCTAGAGACCATTCTTTT TTTTTGCATT chrXII:1051923-1052229 - 38 7.01e-12 GGGGATCAGC GGTTCGATCCCGCTAGAGACCATTATTTT TTTTACTTTA chrIV:1256760-1257293 - 25 8.18e-12 ATGGGGCCCG GGTTCGATTCCCGGCTTCCGCATTTTTTG TGCAATTTTT chrIV:667806-668266 - 14 9.52e-12 GGGGATCAGC GGTTCGATCCCGCTAGAGACCATTTTTAT TTTTTCTCCT chrI:166169-166565 + 1 2.30e-11 . GGTTCGATTCCGGTTGCGTCCAAATTTTT TTGTTAATCC chrX:390830-391322 - 10 2.65e-11 GAAGGTCGAG AGTTCGAACCTCCCCTGGAGCATATTTTT ATACGTATA chrXIII:372208-372664 - 52 3.51e-11 GAACGTCCCC AGTTCGATCCTGGGCGAAATCATTTTTTT AGCACTTTAT chrXII:214672-215066 - 57 4.61e-11 AGAGGTCATC GGTTCGATTCCGGTTGCGTCCATTTATTT TTTACTTTTA chrXIII:480408-480835 - 43 5.28e-11 TAAGGTTAGG GGTTCGAGCCCCCTACAGGGCTTCTTTTT TTGAAGATTC chrV:435581-436008 - 1 5.28e-11 TAAGGTTAGG GGTTCGAGCCCCCTACAGGGCTTTCTTTT chrIII:151056-151518 - 40 5.28e-11 TAAGGTTAGG GGTTCGAGCCCCCTACAGGGCTTTCTTTT TTCTTGGAAA chrXIII:463337-463847 + 62 6.90e-11 GCCAGATCGG GGTTCAATTCCCCGTCGCGGAGATTTTTT TATCAGACCA chrX:204544-205062 + 32 6.90e-11 GCCAGATCGG GGTTCAATTCCCCGTCGCGGAGATTTTTT TTGGCCCTTG chrIX:336145-336616 - 12 6.90e-11 GCCAGATCGG GGTTCAATTCCCCGTCGCGGAGATTTTTT TACCATAACT chrIV:1016986-1017498 - 8 8.96e-11 TGGAGACCGG GGTTCGACTCCCCGCTTCGGAGTTTCTTT TTTATTT chrX:378202-378579 + 72 1.02e-10 GAACGTCCCC AGTTCGATCCTGGGCGAAATCAATTTTTT chrVI:180645-181269 - 60 1.02e-10 TTGGGCCCCC GGTTCGATTCCGGGCTTGCGCAGTCCTTT TTTTAAGGAT chrV:438550-438947 + 54 1.02e-10 GAACGTCCCC AGTTCGATCCTGGGCGAAATCAATTTTTT TTTTCGAAAA chrV:288166-288791 - 8 1.02e-10 TGCCCGCGCT GGTTCAAATCCTGCTGGTGTCGTTTTTTT TATTGTT chrXIV:632410-632928 + 32 1.16e-10 CAAGATCGTG AGTTCAACCCTCACTGGGGTCGTTTTTTT TCTTATTTCA chrVI:137232-137700 - 63 1.16e-10 AAGATCGTG AGTTCAACCCTCACTGGGGTCGTTTTTTT ATTCAAAATC chrXV:976378-976610 + 28 1.49e-10 GAAGGTCGAG AGTTCGAACCTCCCCTGGAGCAATATTTT TTTGCTAATA chrXIII:362927-363264 + 69 1.49e-10 ATGAAACCCT GGTTCGATTCTAGGAGATGGCATTTTCTT TTT chrVII:401440-401618 - 41 1.49e-10 TGGAGACCGG GGTTCGACTCCCCGTATCGGAGTATTTTT TTGAAAGTTT chrV:130826-131401 - 12 1.49e-10 GAACAACCCC GGTTCGAATCCGGGTAAGACCTATTTTTT TCCCCCGCTC chrIX:299988-300471 - 42 1.49e-10 TAAGGTTAGG GGTTCGAGCCCCCTACAGGGCTATCTTTT TACCATTTTC chrXVI:435667-436170 - 18 1.69e-10 GTTGGTCCTT AGTTCGATCCTGAGTGCGAGCTTTCTTTT TTTCCAAAGA chrXIV:96014-96465 - 45 1.69e-10 TGGGGACACG GGTTCGATTCTCGTACCGCTCAAATTTTT TGATGACATT chrII:642840-643259 - 1 1.69e-10 GTTGGTCCTT AGTTCGATCCTGAGTGCGAGCTTCTTTTT chrXVI:209960-210471 - 20 1.91e-10 TGGAGACCGG GGTTCGACTCCCCGTATCGGAGTTTTCTT TTTGCTTCCT chrXII:167713-168240 - 11 1.91e-10 TGCCCGCGCA GGTTCGAGTCCTGCAGTTGTCGTTATTTT TTCTTTTTCT chrII:226970-227337 + 32 1.91e-10 TGCCCGCGCA GGTTCGAGTCCTGCAGTTGTCGTTATTTT TTGGACAGTA chrXII:426884-427448 + 66 2.44e-10 GCCAGATCGG GGTTCAATTCCCCGTCGCGGAGAATTTTT TTAAGC chrXIII:420348-420860 - 27 3.11e-10 GAACGTCCCC AGTTCGATCCTGGGCGAAATCATTTTTAT CTCAGCCGTT chrXII:374209-374589 + 57 4.42e-10 GAAGATTCCA GGTTCAAGTCCTGGCGGGGAAGATTTTTT TGCTCCGACA chrIV:619734-620200 - 45 4.42e-10 GAAGATTCCA GGTTCAAGTCCTGGCGGGGAAGATTTTTT ATACATTTTT chrVIII:62504-63135 + 36 5.57e-10 ATGAAACCCT GGTTCGATTCTAGGAGATGGCATTTATTT TTTTGAAATT chrVII:823339-823725 + 52 5.57e-10 GAACGTCCCC AGTTCGATCCTGGGCGAAATCATTTTTTG AAGATTACAT chrVII:774127-774727 + 23 5.57e-10 AGAGGTCTCC GGTTCGATTCCGGACTCGTCCAAATTTTT TTACTTTTAA chrIX:248470-249338 + 56 6.24e-10 TGCCCGCGCT GGTTCAAATCCTGCTGGTGTCGTTATTTT TTTATTTTTT chrV:176856-177450 + 46 6.99e-10 TGGAGACCGG GGTTCGACTCCCCGTATCGGAGTACTTTT TTGATGGCTA chrXIII:290586-291205 + 6 8.74e-10 ACCGG GGTTCGACTCCCCGTATCGGAGTCTTCTT TTTGAAGAAA chrXI:162327-162722 - 6 8.74e-10 GAAGATTATG GGTTCGACCCCCATCGTGAGTGTTTTTTA CACCA chrV:207359-207547 + 4 8.74e-10 CCT GGTTCGATTCTAGGAGATGGCATATTTAT TTTTTATATT chrIV:437578-438109 + 39 8.74e-10 TGCCCGCGCA GGTTCGAGTCCTGCAGTTGTCGTCATTTT TATATTCCCA chrXIII:131566-132120 - 25 1.21e-09 GAAGATTATG GGTTCGACCCCCATCGTGAGTGCTTTGTT TCTTCTTTTT chrX:374184-374796 - 59 1.21e-09 GAAGATTATG GGTTCGACCCCCATCGTGAGTGCTTTGTT TCTTCCGTGA chrX:355179-355766 + 2 1.21e-09 G GGTTCGACCCCCATCGTGAGTGCTTTGTT TCTTCCGTGA chrII:405695-406215 + 23 1.21e-09 GAAGATTATG GGTTCGACCCCCATCGTGAGTGCTTTGTT TCTTCCGTGA chrX:414788-415217 + 65 1.51e-09 TAAGGTTAGG GGTTCGAGCCCCCTACAGGGCTAATATTT TTTTCTT chrVII:730971-731428 + 40 1.51e-09 CAAGATCGTG AGTTCAACCCTCACTGGGGTCGTTTTTTG CTTGAAATGA chrXII:975803-976197 - 26 1.68e-09 CAAGATCGTG AGTTCAACCCTCACTGGGGTCGTTTATTT TTTTTGCATT chrX:422720-423236 + 60 1.68e-09 GAAGGTCGAG AGTTCGAACCTCCCCTGGAGCACATTTTC TTTTTTTGTG chrXV:353853-354309 - 3 2.07e-09 GGAGATCATC GGTTCAAATCCGATTGGAAGCATTTTTTG TC chrVIII:115830-116387 - 42 2.07e-09 GGAGATCATC GGTTCAAATCCGATTGGAAGCATTTTTTG CATTGATTTC chrIV:1175742-1176104 + 7 2.07e-09 GTCGAG AGTTCGAACCTCCCCTGGAGCATTTTTGC CGAGCACGGT chrXIII:321000-321322 - 29 2.29e-09 AGAGGTCTCC GGTTCGATTCCGGACTCGTCCATTTTTTA TTTTTTTGGC chrIV:520748-521379 + 9 2.29e-09 ACAACCCC GGTTCGAATCCGGGTAGGACCTTTTCTAT TTTTTAACCC chrII:326466-327064 - 70 2.54e-09 CG AGTTCGAACCTCGGTTGGATCAAACTCTT TATTTTTTTA chrXVI:689369-689878 + 52 3.82e-09 TGCCCGCGCT GGTTCAAATCCTGCTGGTGTCGTATTATT TTTTGAAATT chrVII:541712-542144 + 22 3.82e-09 TGGAGACCGG GGTTCGACTCCCCGTATCGGAGTGTTCTT TTTCTTACCT chrXVI:856737-857153 + 58 5.14e-09 AGAGGTCTCC GGTTCGATTCCGGACTCGTCCATTTTAAT TTTTGATTAT chrXII:92407-92916 + 18 5.66e-09 AGAGGCCCTG GGTTCAATTCCCAGCTCGCCCCTTTATTT TCTTTTTTTG chrXV:663486-664123 - 51 8.31e-09 GAACGTCCCC AGTTCGATCCTGGGCGAAATCATTTTTAA GAATATTTTA chrV:487018-487601 - 65 9.13e-09 AGACCGG GGTTCGACTCCCCGTATCGGAGTATTCGT TATATTTTTT chrXIII:808047-808516 - 8 1.74e-08 GAACAACCCC AGTTCGAATCCGGGTGGGACCTTCCCTTC ATTTTTC chrVIII:475475-475911 - 56 1.74e-08 AAAGGTCCCG AGTTCGATCCTCGGTTGGAACATTTTAAC ATCGATTTTT chrXV:274467-275036 + 51 1.90e-08 TACCTGCGCA GGTTCGAATCCTGTCTGTGACGCATTTCT TTTTTGTGAA chrXIV:725893-726378 - 42 1.90e-08 TGTCCGCGCG AGTTCGAACCTCGCATCCTTCAGTATTTT TTTTTATTTT chrII:9462-9838 + 45 1.90e-08 TGTCCGCGCG AGTTCGAACCTCGCATCCTTCAGTATTTT TTTTGATGAT chrV:492191-492573 - 13 2.08e-08 GAAGATTCCA GGTTCAAGTCCTGGCGGGGAAGGATTATT TTTCTTTTAA chrXIV:631561-632129 - 44 2.48e-08 GGAGGTCCCG GGTTCGAGTCCCGGCTCGCCCCCATTGAT TTATTTTTAT chrXII:628066-628865 + 61 7.41e-08 AAGATGCAAG AGTTCGAATCTCTTAGCAACCATTATTTT TGCCTTCCGA chrVIII:466813-467259 + 54 1.10e-07 AAAGGTCGCT AGTTCAATTCTGGCAGGTGGCATTATACC GGTATTATTT chrXVI:55875-56425 - 62 1.39e-07 AAGGGTTGCA GGTTCAATTCCTGTCCGTTTCAATTAATT TTTTTCCCCA chrVII:779401-779962 + 35 1.39e-07 TGGGGACACG GGTTCGATTCTCGTACCGCTCAAGATTAC TTTTTTAATT chrIV:1095165-1095655 - 3 1.75e-07 GGAGGTCCTG TGTTCGATCCACAGAGTTCGCATTTTTAT TT chrXIV:546547-547685 + 44 2.37e-07 GTGGTCTAGT GGTATGATTCTCGCTTTGGGCGACTTCCT GCCAAAACAG chrXIII:195949-196306 - 49 2.37e-07 GTGGTCTAGT GGTATGATTCTCGCTTTGGGCGACTTCCT GATTAAACAG chrI:138955-139369 + 56 2.37e-07 GTGGTCTAGT GGTATGATTCTCGCTTTGGGCGACTTCCT GAATAAACAG chrII:347426-347971 + 17 4.55e-07 TGTCCGCGCG AGTTCGAACCTCGCATCCTTCAGTAATAT TTTTTTAATA chrXVI:338537-339182 - 32 1.64e-06 TGATGTCCTC GGATCGAAACCGAGCGGCGCTAAATTTAT TTTTTTCTTT chrX:517657-518078 + 46 2.28e-05 AGCCCTGCGC GCTTCCACTGCGCCACGGCGCTTAACTTT TATGAATACT chrVII:184875-185919 - 28 3.76e-05 GAGCTGAATT GGTTGAGTGATGGGAGCTGGCACTCTTTT AAATGGATTA chrXVI:653870-655015 - 11 1.61e-04 ATCTCCACAA AATTCTATCTCTGCACTGAACAGTTTCGT AAGACTAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGATYCYSSBHKNGRKCRTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:142406-142948 3.8e-13 66_[-1]_5 chrV:551069-551581 5.6e-13 2_[-1]_69 chrII:197286-197838 5.6e-13 33_[+1]_38 chrXV:226407-226899 9.6e-13 [-1]_71 chrV:443066-443362 3.2e-12 30_[-1]_41 chrX:531544-532256 3.7e-12 26_[+1]_45 chrVI:162039-162598 3.7e-12 8_[+1]_63 chrXIV:569679-570090 5.1e-12 25_[-1]_46 chrXII:1051923-1052229 7e-12 37_[-1]_34 chrIV:1256760-1257293 8.2e-12 24_[-1]_47 chrIV:667806-668266 9.5e-12 13_[-1]_58 chrI:166169-166565 2.3e-11 [+1]_71 chrX:390830-391322 2.7e-11 9_[-1]_62 chrXIII:372208-372664 3.5e-11 51_[-1]_20 chrXII:214672-215066 4.6e-11 56_[-1]_15 chrXIII:480408-480835 5.3e-11 42_[-1]_29 chrV:435581-436008 5.3e-11 [-1]_71 chrIII:151056-151518 5.3e-11 39_[-1]_32 chrXIII:463337-463847 6.9e-11 61_[+1]_10 chrX:204544-205062 6.9e-11 31_[+1]_40 chrIX:336145-336616 6.9e-11 11_[-1]_60 chrIV:1016986-1017498 9e-11 7_[-1]_64 chrX:378202-378579 1e-10 71_[+1] chrVI:180645-181269 1e-10 59_[-1]_12 chrV:438550-438947 1e-10 53_[+1]_18 chrV:288166-288791 1e-10 7_[-1]_64 chrXIV:632410-632928 1.2e-10 31_[+1]_40 chrVI:137232-137700 1.2e-10 62_[-1]_9 chrXV:976378-976610 1.5e-10 27_[+1]_44 chrXIII:362927-363264 1.5e-10 68_[+1]_3 chrVII:401440-401618 1.5e-10 40_[-1]_31 chrV:130826-131401 1.5e-10 11_[-1]_60 chrIX:299988-300471 1.5e-10 41_[-1]_30 chrXVI:435667-436170 1.7e-10 17_[-1]_54 chrXIV:96014-96465 1.7e-10 44_[-1]_27 chrII:642840-643259 1.7e-10 [-1]_71 chrXVI:209960-210471 1.9e-10 19_[-1]_52 chrXII:167713-168240 1.9e-10 10_[-1]_61 chrII:226970-227337 1.9e-10 31_[+1]_40 chrXII:426884-427448 2.4e-10 65_[+1]_6 chrXIII:420348-420860 3.1e-10 26_[-1]_45 chrXII:374209-374589 4.4e-10 56_[+1]_15 chrIV:619734-620200 4.4e-10 44_[-1]_27 chrVIII:62504-63135 5.6e-10 35_[+1]_36 chrVII:823339-823725 5.6e-10 51_[+1]_20 chrVII:774127-774727 5.6e-10 22_[+1]_49 chrIX:248470-249338 6.2e-10 55_[+1]_16 chrV:176856-177450 7e-10 45_[+1]_26 chrXIII:290586-291205 8.7e-10 5_[+1]_66 chrXI:162327-162722 8.7e-10 5_[-1]_66 chrV:207359-207547 8.7e-10 3_[+1]_68 chrIV:437578-438109 8.7e-10 38_[+1]_33 chrXIII:131566-132120 1.2e-09 24_[-1]_47 chrX:374184-374796 1.2e-09 58_[-1]_13 chrX:355179-355766 1.2e-09 1_[+1]_70 chrII:405695-406215 1.2e-09 22_[+1]_49 chrX:414788-415217 1.5e-09 64_[+1]_7 chrVII:730971-731428 1.5e-09 39_[+1]_32 chrXII:975803-976197 1.7e-09 25_[-1]_46 chrX:422720-423236 1.7e-09 59_[+1]_12 chrXV:353853-354309 2.1e-09 2_[-1]_69 chrVIII:115830-116387 2.1e-09 41_[-1]_30 chrIV:1175742-1176104 2.1e-09 6_[+1]_65 chrXIII:321000-321322 2.3e-09 28_[-1]_43 chrIV:520748-521379 2.3e-09 8_[+1]_63 chrII:326466-327064 2.5e-09 69_[-1]_2 chrXVI:689369-689878 3.8e-09 51_[+1]_20 chrVII:541712-542144 3.8e-09 21_[+1]_50 chrXVI:856737-857153 5.1e-09 57_[+1]_14 chrXII:92407-92916 5.7e-09 17_[+1]_54 chrXV:663486-664123 8.3e-09 50_[-1]_21 chrV:487018-487601 9.1e-09 64_[-1]_7 chrXIII:808047-808516 1.7e-08 7_[-1]_64 chrVIII:475475-475911 1.7e-08 55_[-1]_16 chrXV:274467-275036 1.9e-08 50_[+1]_21 chrXIV:725893-726378 1.9e-08 41_[-1]_30 chrII:9462-9838 1.9e-08 44_[+1]_27 chrV:492191-492573 2.1e-08 12_[-1]_59 chrXIV:631561-632129 2.5e-08 43_[-1]_28 chrXII:628066-628865 7.4e-08 60_[+1]_11 chrVIII:466813-467259 1.1e-07 53_[+1]_18 chrXVI:55875-56425 1.4e-07 61_[-1]_10 chrVII:779401-779962 1.4e-07 34_[+1]_37 chrIV:1095165-1095655 1.8e-07 2_[-1]_69 chrXIV:546547-547685 2.4e-07 43_[+1]_28 chrXIII:195949-196306 2.4e-07 48_[-1]_23 chrI:138955-139369 2.4e-07 55_[+1]_16 chrII:347426-347971 4.6e-07 16_[+1]_55 chrXVI:338537-339182 1.6e-06 31_[-1]_40 chrX:517657-518078 2.3e-05 45_[+1]_26 chrVII:184875-185919 3.8e-05 27_[-1]_44 chrXVI:653870-655015 0.00016 10_[-1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGATYCYSSBHKNGRKCRTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTTCGATYCYSSBHKNGRKCRTTTTTTT width=29 seqs=92 chrIII:142406-142948 ( 67) GGTTCGATTCCGGGCTTGCGCATCTTTTT 1 chrV:551069-551581 ( 3) GGTTCGATCCCGCTAGAGACCATTTTTTT 1 chrII:197286-197838 ( 34) GGTTCGATCCCGCTAGAGACCATTTTTTT 1 chrXV:226407-226899 ( 1) GGTTCGATTCCGGGCTTGCGCAAATTTTT 1 chrV:443066-443362 ( 31) GGTTCGATCCCGCTAGAGACCATATTTTT 1 chrX:531544-532256 ( 27) GGTTCGATTCCGGGCTTGCGCAGTTTCTT 1 chrVI:162039-162598 ( 9) GGTTCGATTCCGGGCTTGCGCAGTTTCTT 1 chrXIV:569679-570090 ( 26) GGTTCGATCCCGCTAGAGACCATTCTTTT 1 chrXII:1051923-1052229 ( 38) GGTTCGATCCCGCTAGAGACCATTATTTT 1 chrIV:1256760-1257293 ( 25) GGTTCGATTCCCGGCTTCCGCATTTTTTG 1 chrIV:667806-668266 ( 14) GGTTCGATCCCGCTAGAGACCATTTTTAT 1 chrI:166169-166565 ( 1) GGTTCGATTCCGGTTGCGTCCAAATTTTT 1 chrX:390830-391322 ( 10) AGTTCGAACCTCCCCTGGAGCATATTTTT 1 chrXIII:372208-372664 ( 52) AGTTCGATCCTGGGCGAAATCATTTTTTT 1 chrXII:214672-215066 ( 57) GGTTCGATTCCGGTTGCGTCCATTTATTT 1 chrXIII:480408-480835 ( 43) GGTTCGAGCCCCCTACAGGGCTTCTTTTT 1 chrV:435581-436008 ( 1) GGTTCGAGCCCCCTACAGGGCTTTCTTTT 1 chrIII:151056-151518 ( 40) GGTTCGAGCCCCCTACAGGGCTTTCTTTT 1 chrXIII:463337-463847 ( 62) GGTTCAATTCCCCGTCGCGGAGATTTTTT 1 chrX:204544-205062 ( 32) GGTTCAATTCCCCGTCGCGGAGATTTTTT 1 chrIX:336145-336616 ( 12) GGTTCAATTCCCCGTCGCGGAGATTTTTT 1 chrIV:1016986-1017498 ( 8) GGTTCGACTCCCCGCTTCGGAGTTTCTTT 1 chrX:378202-378579 ( 72) AGTTCGATCCTGGGCGAAATCAATTTTTT 1 chrVI:180645-181269 ( 60) GGTTCGATTCCGGGCTTGCGCAGTCCTTT 1 chrV:438550-438947 ( 54) AGTTCGATCCTGGGCGAAATCAATTTTTT 1 chrV:288166-288791 ( 8) GGTTCAAATCCTGCTGGTGTCGTTTTTTT 1 chrXIV:632410-632928 ( 32) AGTTCAACCCTCACTGGGGTCGTTTTTTT 1 chrVI:137232-137700 ( 63) AGTTCAACCCTCACTGGGGTCGTTTTTTT 1 chrXV:976378-976610 ( 28) AGTTCGAACCTCCCCTGGAGCAATATTTT 1 chrXIII:362927-363264 ( 69) GGTTCGATTCTAGGAGATGGCATTTTCTT 1 chrVII:401440-401618 ( 41) GGTTCGACTCCCCGTATCGGAGTATTTTT 1 chrV:130826-131401 ( 12) GGTTCGAATCCGGGTAAGACCTATTTTTT 1 chrIX:299988-300471 ( 42) GGTTCGAGCCCCCTACAGGGCTATCTTTT 1 chrXVI:435667-436170 ( 18) AGTTCGATCCTGAGTGCGAGCTTTCTTTT 1 chrXIV:96014-96465 ( 45) GGTTCGATTCTCGTACCGCTCAAATTTTT 1 chrII:642840-643259 ( 1) AGTTCGATCCTGAGTGCGAGCTTCTTTTT 1 chrXVI:209960-210471 ( 20) GGTTCGACTCCCCGTATCGGAGTTTTCTT 1 chrXII:167713-168240 ( 11) GGTTCGAGTCCTGCAGTTGTCGTTATTTT 1 chrII:226970-227337 ( 32) GGTTCGAGTCCTGCAGTTGTCGTTATTTT 1 chrXII:426884-427448 ( 66) GGTTCAATTCCCCGTCGCGGAGAATTTTT 1 chrXIII:420348-420860 ( 27) AGTTCGATCCTGGGCGAAATCATTTTTAT 1 chrXII:374209-374589 ( 57) GGTTCAAGTCCTGGCGGGGAAGATTTTTT 1 chrIV:619734-620200 ( 45) GGTTCAAGTCCTGGCGGGGAAGATTTTTT 1 chrVIII:62504-63135 ( 36) GGTTCGATTCTAGGAGATGGCATTTATTT 1 chrVII:823339-823725 ( 52) AGTTCGATCCTGGGCGAAATCATTTTTTG 1 chrVII:774127-774727 ( 23) GGTTCGATTCCGGACTCGTCCAAATTTTT 1 chrIX:248470-249338 ( 56) GGTTCAAATCCTGCTGGTGTCGTTATTTT 1 chrV:176856-177450 ( 46) GGTTCGACTCCCCGTATCGGAGTACTTTT 1 chrXIII:290586-291205 ( 6) GGTTCGACTCCCCGTATCGGAGTCTTCTT 1 chrXI:162327-162722 ( 6) GGTTCGACCCCCATCGTGAGTGTTTTTTA 1 chrV:207359-207547 ( 4) GGTTCGATTCTAGGAGATGGCATATTTAT 1 chrIV:437578-438109 ( 39) GGTTCGAGTCCTGCAGTTGTCGTCATTTT 1 chrXIII:131566-132120 ( 25) GGTTCGACCCCCATCGTGAGTGCTTTGTT 1 chrX:374184-374796 ( 59) GGTTCGACCCCCATCGTGAGTGCTTTGTT 1 chrX:355179-355766 ( 2) GGTTCGACCCCCATCGTGAGTGCTTTGTT 1 chrII:405695-406215 ( 23) GGTTCGACCCCCATCGTGAGTGCTTTGTT 1 chrX:414788-415217 ( 65) GGTTCGAGCCCCCTACAGGGCTAATATTT 1 chrVII:730971-731428 ( 40) AGTTCAACCCTCACTGGGGTCGTTTTTTG 1 chrXII:975803-976197 ( 26) AGTTCAACCCTCACTGGGGTCGTTTATTT 1 chrX:422720-423236 ( 60) AGTTCGAACCTCCCCTGGAGCACATTTTC 1 chrXV:353853-354309 ( 3) GGTTCAAATCCGATTGGAAGCATTTTTTG 1 chrVIII:115830-116387 ( 42) GGTTCAAATCCGATTGGAAGCATTTTTTG 1 chrIV:1175742-1176104 ( 7) AGTTCGAACCTCCCCTGGAGCATTTTTGC 1 chrXIII:321000-321322 ( 29) GGTTCGATTCCGGACTCGTCCATTTTTTA 1 chrIV:520748-521379 ( 9) GGTTCGAATCCGGGTAGGACCTTTTCTAT 1 chrII:326466-327064 ( 70) AGTTCGAACCTCGGTTGGATCAAACTCTT 1 chrXVI:689369-689878 ( 52) GGTTCAAATCCTGCTGGTGTCGTATTATT 1 chrVII:541712-542144 ( 22) GGTTCGACTCCCCGTATCGGAGTGTTCTT 1 chrXVI:856737-857153 ( 58) GGTTCGATTCCGGACTCGTCCATTTTAAT 1 chrXII:92407-92916 ( 18) GGTTCAATTCCCAGCTCGCCCCTTTATTT 1 chrXV:663486-664123 ( 51) AGTTCGATCCTGGGCGAAATCATTTTTAA 1 chrV:487018-487601 ( 65) GGTTCGACTCCCCGTATCGGAGTATTCGT 1 chrXIII:808047-808516 ( 8) AGTTCGAATCCGGGTGGGACCTTCCCTTC 1 chrVIII:475475-475911 ( 56) AGTTCGATCCTCGGTTGGAACATTTTAAC 1 chrXV:274467-275036 ( 51) GGTTCGAATCCTGTCTGTGACGCATTTCT 1 chrXIV:725893-726378 ( 42) AGTTCGAACCTCGCATCCTTCAGTATTTT 1 chrII:9462-9838 ( 45) AGTTCGAACCTCGCATCCTTCAGTATTTT 1 chrV:492191-492573 ( 13) GGTTCAAGTCCTGGCGGGGAAGGATTATT 1 chrXIV:631561-632129 ( 44) GGTTCGAGTCCCGGCTCGCCCCCATTGAT 1 chrXII:628066-628865 ( 61) AGTTCGAATCTCTTAGCAACCATTATTTT 1 chrVIII:466813-467259 ( 54) AGTTCAATTCTGGCAGGTGGCATTATACC 1 chrXVI:55875-56425 ( 62) GGTTCAATTCCTGTCCGTTTCAATTAATT 1 chrVII:779401-779962 ( 35) GGTTCGATTCTCGTACCGCTCAAGATTAC 1 chrIV:1095165-1095655 ( 3) TGTTCGATCCACAGAGTTCGCATTTTTAT 1 chrXIV:546547-547685 ( 44) GGTATGATTCTCGCTTTGGGCGACTTCCT 1 chrXIII:195949-196306 ( 49) GGTATGATTCTCGCTTTGGGCGACTTCCT 1 chrI:138955-139369 ( 56) GGTATGATTCTCGCTTTGGGCGACTTCCT 1 chrII:347426-347971 ( 17) AGTTCGAACCTCGCATCCTTCAGTAATAT 1 chrXVI:338537-339182 ( 32) GGATCGAAACCGAGCGGCGCTAAATTTAT 1 chrX:517657-518078 ( 46) GCTTCCACTGCGCCACGGCGCTTAACTTT 1 chrVII:184875-185919 ( 28) GGTTGAGTGATGGGAGCTGGCACTCTTTT 1 chrXVI:653870-655015 ( 11) AATTCTATCTCTGCACTGAACAGTTTCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGATYCYSSBHKNGRKCRTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40968 bayes= 6.56559 E= 1.1e-332 -16 -1317 187 -480 -480 -417 232 -1317 -480 -1317 -1317 170 -322 -1317 -1317 167 -1317 228 -417 -322 -48 -417 195 -480 170 -1317 -417 -1317 -56 -9 -59 66 -480 111 -417 87 -480 230 -417 -480 -480 171 -1317 20 -322 128 87 -122 -80 58 141 -480 -322 35 118 -16 0 87 -1317 15 -180 -37 132 -16 -41 -18 68 -10 -163 -18 155 -100 20 -59 111 -163 -222 -1 132 -28 -100 199 -1317 -222 72 -317 87 -134 -28 -118 -118 92 -48 -101 -317 113 -110 -85 -1317 131 -200 -185 -1317 152 -222 -59 -185 131 -122 -185 -259 137 -322 -159 -185 148 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGATYCYSSBHKNGRKCRTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 92 E= 1.1e-332 0.271739 0.000000 0.717391 0.010870 0.010870 0.010870 0.978261 0.000000 0.010870 0.000000 0.000000 0.989130 0.032609 0.000000 0.000000 0.967391 0.000000 0.956522 0.010870 0.032609 0.217391 0.010870 0.760870 0.010870 0.989130 0.000000 0.010870 0.000000 0.206522 0.184783 0.130435 0.478261 0.010870 0.423913 0.010870 0.554348 0.010870 0.967391 0.010870 0.010870 0.010870 0.641304 0.000000 0.347826 0.032609 0.478261 0.358696 0.130435 0.173913 0.293478 0.521739 0.010870 0.032609 0.250000 0.445652 0.271739 0.304348 0.358696 0.000000 0.336957 0.086957 0.152174 0.489130 0.271739 0.228261 0.173913 0.315217 0.282609 0.097826 0.173913 0.576087 0.152174 0.347826 0.130435 0.423913 0.097826 0.065217 0.195652 0.489130 0.250000 0.152174 0.782609 0.000000 0.065217 0.500000 0.021739 0.358696 0.119565 0.250000 0.086957 0.086957 0.576087 0.217391 0.097826 0.021739 0.663043 0.141304 0.108696 0.000000 0.750000 0.076087 0.054348 0.000000 0.869565 0.065217 0.130435 0.054348 0.750000 0.130435 0.054348 0.032609 0.782609 0.032609 0.065217 0.054348 0.847826 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGATYCYSSBHKNGRKCRTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- [GA]GTTC[GA]A[TA][TC]C[CT][CG][GC][GTC][CTA][GT][GTA]G[GA][GT]C[AG][TA][TA]TTTTT -------------------------------------------------------------------------------- Time 316.68 secs. ******************************************************************************** ******************************************************************************** MOTIF BTBDTRGYBYAGTKGKTARAGSSNYCGVYT MEME-2 width = 30 sites = 70 llr = 1216 E-value = 1.1e-206 ******************************************************************************** -------------------------------------------------------------------------------- Motif BTBDTRGYBYAGTKGKTARAGSSNYCGVYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1213:4::::a3:::::7452::222131: pos.-specific C 323::::744:::2::3:12:532451252 probability G 3233:6a:22:7:5a52:42836221741: matrix T 3534a::333::a3:56311:113321138 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * * * * * Relative 1.4 * * *** * * Entropy 1.2 **** *** * * * (25.1 bits) 0.9 **** *** ** *** * * 0.7 ***** *** ** * *** * * 0.5 *************** *** ** ** 0.2 * ********************* ****** 0.0 ------------------------------ Multilevel GTCTTGGCCCAGTGGGTAGAGCGTCCGGCT consensus T TA A TTT A T TCTACAGCATA AT sequence C GG G C G C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBDTRGYBYAGTKGKTARAGSSNYCGVYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:115322-115724 + 18 3.18e-13 GAACTCATCC TTGTTAGCTCAGTTGGTAGAGCGTTCGGCT TTTAAGCGCA chrXIV:374654-375103 + 44 2.60e-11 AAAATAAGCG GACTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAC chrIV:1095165-1095655 - 69 2.60e-11 CG GACTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrXV:340164-340600 - 7 3.64e-11 AGATCTGTTC CTCGTGGCCCAATGGTCACGGCGTCTGGCT ACGAAC chrXII:374209-374589 + 9 3.64e-11 TCTTGTTC CTCGTGGCCCAATGGTCACGGCGTCTGGCT ACGAACCAGA chrXI:490777-491212 + 27 3.64e-11 ATTCTTGTTC CTCGTGGCCCAATGGTCACGGCGTCTGGCT ACGAACCAGA chrX:233697-234155 + 66 3.64e-11 ATTCTTGTTC CTCGTGGCCCAATGGTCACGGCGTCTGGCT ACGAA chrV:492191-492573 - 60 3.64e-11 CATCCTATTC CTCGTGGCCCAATGGTCACGGCGTCTGGCT ACGAACCAGA chrXVI:622375-622843 - 40 5.06e-11 CTGATATGCG GATTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrXVI:560026-560485 - 52 5.06e-11 AAATTGAGCG GATTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrVIII:358298-358765 - 56 5.06e-11 ATAGTAAGCG GATTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrVIII:237752-238136 - 13 5.06e-11 ATAGTAAGCG GATTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrVII:440520-440999 - 66 5.06e-11 ATGCG GATTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAA chrVI:157837-158201 - 6 5.06e-11 AATAGAAGCG GATTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGA chrII:36233-36607 + 31 5.06e-11 GTTGTAAGCG GATTTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAC chrXVI:581815-582326 + 45 1.75e-10 CAAAAGAGCC TTGTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrX:414788-415217 + 17 1.75e-10 CGAATTAGCC TTGTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrVII:122070-122470 + 52 1.75e-10 CGAATTAGCC TTGTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrV:435581-436008 - 48 1.75e-10 AATAAGAGCC TTGTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrIV:1351999-1353058 - 28 1.75e-10 CGAAATAGCC TTGTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrIV:1201522-1202044 + 20 1.75e-10 ATAAATAGCC TTGTTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrXVI:856737-857153 + 10 2.34e-10 AGATTCGGG CGTGTGGCGTAGTCGGTAGCGCGCTCCCTT AGCATGGGAG chrXII:656838-657196 - 7 2.34e-10 GAAAATTGGG CGTGTGGCGTAGTCGGTAGCGCGCTCCCTT AGCATG chrVII:794236-794568 + 68 3.58e-10 AGATTGCGGG CACATGGCGCAGTTGGTAGCGCGCTTCCCT TGC chrV:288166-288791 - 64 4.11e-10 GATAGGC ACTATGGCCGAGTGGTTAAGGCGACAGACT TGAAATCTGT chrXIV:602094-602542 + 47 7.02e-10 TAACAATGGT CTCTTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrXII:734620-734978 + 56 7.02e-10 AAAGTTTGGT CTCTTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrV:551069-551581 - 51 7.02e-10 GATTACAGGT CTCTTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrIX:183314-183710 - 19 7.02e-10 AATTCCTGGT CTCTTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrIV:667806-668266 - 62 7.02e-10 CAAATTGGT CTCTTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrXII:605143-605622 - 68 1.91e-09 GCT CGTGTAGCTCAGTGGTTAGAGCTTCGTGCT TATAGCAACA chrXIII:259008-259451 - 28 3.04e-09 TTAGTATGGC AACTTGGCCGAGTGGTTAAGGCGAAAGATT AGAAATCTTT chrXII:167713-168240 - 67 3.04e-09 TGGC AACTTGGCCGAGTGGTTAAGGCGAAAGATT AGAAATCTTT chrXV:353853-354309 - 50 8.04e-09 GTTTACTGCT TCTATGGCCAAGTTGGTAAGGCGCCACACT AGTAATGTGG chrXIII:586318-587049 - 44 8.04e-09 TTACTATGGT TTCGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrXI:307938-308447 - 43 8.04e-09 ATTAAGTGGT TTCGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrX:378202-378579 + 23 8.04e-09 ATTAATAGGT TTCGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrVII:823339-823725 + 3 8.04e-09 GT TTCGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrV:469248-469653 + 60 8.04e-09 AATAATTGGT TTCGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrV:438550-438947 + 5 8.04e-09 AGGT TTCGTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrXII:962844-963270 - 16 9.85e-09 TATCGACGGA GGGTTGGCCGAGTGGTCTAAGGCGGCAGAC TTAAGATCTG chrXI:83983-84423 + 58 9.85e-09 TTTGTATGGA GGGTTGGCCGAGTGGTCTAAGGCGGCAGAC TTAAGATCTG chrX:424245-424722 - 50 9.85e-09 ATAAGATGGA GGGTTGGCCGAGTGGTCTAAGGCGGCAGAC TTAAGATCTG chrIV:519654-519907 + 16 9.85e-09 ATTTTACGGA GGGTTGGCCGAGTGGTCTAAGGCGGCAGAC TTAAGATCTG chrXII:592324-592817 - 67 1.46e-08 TGGG AGTTTGGCCGAGTGGTTTAAGGCGTCAGAT TTAGGTGGAT chrX:617704-618152 + 44 1.46e-08 AAACAATGGG AGTTTGGCCGAGTGGTTTAAGGCGTCAGAT TTAGGTGGAT chrXIII:463337-463847 + 15 1.76e-08 AAATTTGTCC GTGATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrXII:426884-427448 + 19 1.76e-08 TTTCTTATCC GTGATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrX:374184-374796 - 23 1.76e-08 TGTTTCTTCC GTGATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrX:355179-355766 + 37 1.76e-08 TGTTTCTTCC GTGATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrVII:544404-544879 - 25 1.76e-08 TATTTCTTCC GTGATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrVII:531384-531811 + 66 1.76e-08 AGTTACTTCC GTGATAGTTTAATGGTCAGAATGGGCGCTT GTCGC chrIX:336145-336616 - 58 1.76e-08 AAACAAATCC GTGATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrII:405695-406215 + 58 1.76e-08 TGTTTCTTCC GTGATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrV:130826-131401 - 58 3.59e-08 ATTAAGAGGT TTTATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGAA chrII:350603-351049 + 54 3.59e-08 ATAAAAGGGT TTTATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGGA chrXIII:808047-808516 - 54 4.61e-08 AGAAAAAGGT CCTATAGTGTAGTGGTTATCACTTTCGGTT CTGATCCGAA chrXII:448497-448942 - 20 4.61e-08 AAGTTCCGGT CCTATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGGA chrIV:802569-802999 - 36 4.61e-08 AATTGTCGGT CCTATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGGA chrIII:168149-168546 - 43 4.61e-08 AAGTCCTGGT CCTATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGGA chrXIV:442794-443253 + 36 6.87e-08 AATAAGTGGT TGTTTGGCCGAGCGGTCTAAGGCGCCTGAT TCAAGAAATA chrX:422720-423236 + 12 1.33e-07 TTTGTATGCT TCAGTAGCTCAGTAGGAAGAGCGTCAGTCT CATAATCTGA chrX:390830-391322 - 57 1.33e-07 AAATAGTGCT TCAGTAGCTCAGTAGGAAGAGCGTCAGTCT CATAATCTGA chrXV:110853-111208 - 21 1.42e-07 TTAACCCGGG CGGTTAGTGTAGTGGTTATCATCCCACCCT TCCAAGGTGG chrXIV:6618-6998 - 10 1.98e-07 GGTTGGGAGT GGTATGGTTGAGTGGGGCAGGGTAACGAGT GGGGAGGTA chrVIII:556605-556920 + 41 1.98e-07 GGTTGGGAGT GGTATGGTTGAGTGGGGCAGGGTAACGAGT GGGGAGGTAG chrXI:74418-74815 + 61 2.87e-07 GCAATTAGAC TCCATGGCCAAGTTGGTTAAGGCGTGCGAC TGTTAATCGC chrIII:127496-127914 + 64 2.87e-07 ATAAAATGAC TCCATGGCCAAGTTGGTTAAGGCGTGCGAC TGTTAAT chrIV:1150731-1151160 - 14 3.42e-07 TGTTTCAGTC CCAGTGGCCGAGTGGTTAAGGCGATGCCTG CTATTTCCTC chrIV:1256760-1257293 - 71 5.27e-07 . AAAGTGGTTCAGTGGTTAGAATTCATGCTT CCCAAGCATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBDTRGYBYAGTKGKTARAGSSNYCGVYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:115322-115724 3.2e-13 17_[+2]_53 chrXIV:374654-375103 2.6e-11 43_[+2]_27 chrIV:1095165-1095655 2.6e-11 68_[-2]_2 chrXV:340164-340600 3.6e-11 6_[-2]_64 chrXII:374209-374589 3.6e-11 8_[+2]_62 chrXI:490777-491212 3.6e-11 26_[+2]_44 chrX:233697-234155 3.6e-11 65_[+2]_5 chrV:492191-492573 3.6e-11 59_[-2]_11 chrXVI:622375-622843 5.1e-11 39_[-2]_31 chrXVI:560026-560485 5.1e-11 51_[-2]_19 chrVIII:358298-358765 5.1e-11 55_[-2]_15 chrVIII:237752-238136 5.1e-11 12_[-2]_58 chrVII:440520-440999 5.1e-11 65_[-2]_5 chrVI:157837-158201 5.1e-11 5_[-2]_65 chrII:36233-36607 5.1e-11 30_[+2]_40 chrXVI:581815-582326 1.7e-10 44_[+2]_26 chrX:414788-415217 1.7e-10 16_[+2]_54 chrVII:122070-122470 1.7e-10 51_[+2]_19 chrV:435581-436008 1.7e-10 47_[-2]_23 chrIV:1351999-1353058 1.7e-10 27_[-2]_43 chrIV:1201522-1202044 1.7e-10 19_[+2]_51 chrXVI:856737-857153 2.3e-10 9_[+2]_61 chrXII:656838-657196 2.3e-10 6_[-2]_64 chrVII:794236-794568 3.6e-10 67_[+2]_3 chrV:288166-288791 4.1e-10 63_[-2]_7 chrXIV:602094-602542 7e-10 46_[+2]_24 chrXII:734620-734978 7e-10 55_[+2]_15 chrV:551069-551581 7e-10 50_[-2]_20 chrIX:183314-183710 7e-10 18_[-2]_52 chrIV:667806-668266 7e-10 61_[-2]_9 chrXII:605143-605622 1.9e-09 67_[-2]_3 chrXIII:259008-259451 3e-09 27_[-2]_43 chrXII:167713-168240 3e-09 66_[-2]_4 chrXV:353853-354309 8e-09 49_[-2]_21 chrXIII:586318-587049 8e-09 43_[-2]_27 chrXI:307938-308447 8e-09 42_[-2]_28 chrX:378202-378579 8e-09 22_[+2]_48 chrVII:823339-823725 8e-09 2_[+2]_68 chrV:469248-469653 8e-09 59_[+2]_11 chrV:438550-438947 8e-09 4_[+2]_66 chrXII:962844-963270 9.8e-09 15_[-2]_55 chrXI:83983-84423 9.8e-09 57_[+2]_13 chrX:424245-424722 9.8e-09 49_[-2]_21 chrIV:519654-519907 9.8e-09 15_[+2]_55 chrXII:592324-592817 1.5e-08 66_[-2]_4 chrX:617704-618152 1.5e-08 43_[+2]_27 chrXIII:463337-463847 1.8e-08 14_[+2]_56 chrXII:426884-427448 1.8e-08 18_[+2]_52 chrX:374184-374796 1.8e-08 22_[-2]_48 chrX:355179-355766 1.8e-08 36_[+2]_34 chrVII:544404-544879 1.8e-08 24_[-2]_46 chrVII:531384-531811 1.8e-08 65_[+2]_5 chrIX:336145-336616 1.8e-08 57_[-2]_13 chrII:405695-406215 1.8e-08 57_[+2]_13 chrV:130826-131401 3.6e-08 57_[-2]_13 chrII:350603-351049 3.6e-08 53_[+2]_17 chrXIII:808047-808516 4.6e-08 53_[-2]_17 chrXII:448497-448942 4.6e-08 19_[-2]_51 chrIV:802569-802999 4.6e-08 35_[-2]_35 chrIII:168149-168546 4.6e-08 42_[-2]_28 chrXIV:442794-443253 6.9e-08 35_[+2]_35 chrX:422720-423236 1.3e-07 11_[+2]_59 chrX:390830-391322 1.3e-07 56_[-2]_14 chrXV:110853-111208 1.4e-07 20_[-2]_50 chrXIV:6618-6998 2e-07 9_[-2]_61 chrVIII:556605-556920 2e-07 40_[+2]_30 chrXI:74418-74815 2.9e-07 60_[+2]_10 chrIII:127496-127914 2.9e-07 63_[+2]_7 chrIV:1150731-1151160 3.4e-07 13_[-2]_57 chrIV:1256760-1257293 5.3e-07 70_[-2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBDTRGYBYAGTKGKTARAGSSNYCGVYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BTBDTRGYBYAGTKGKTARAGSSNYCGVYT width=30 seqs=70 chrVII:115322-115724 ( 18) TTGTTAGCTCAGTTGGTAGAGCGTTCGGCT 1 chrXIV:374654-375103 ( 44) GACTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrIV:1095165-1095655 ( 69) GACTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrXV:340164-340600 ( 7) CTCGTGGCCCAATGGTCACGGCGTCTGGCT 1 chrXII:374209-374589 ( 9) CTCGTGGCCCAATGGTCACGGCGTCTGGCT 1 chrXI:490777-491212 ( 27) CTCGTGGCCCAATGGTCACGGCGTCTGGCT 1 chrX:233697-234155 ( 66) CTCGTGGCCCAATGGTCACGGCGTCTGGCT 1 chrV:492191-492573 ( 60) CTCGTGGCCCAATGGTCACGGCGTCTGGCT 1 chrXVI:622375-622843 ( 40) GATTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrXVI:560026-560485 ( 52) GATTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrVIII:358298-358765 ( 56) GATTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrVIII:237752-238136 ( 13) GATTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrVII:440520-440999 ( 66) GATTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrVI:157837-158201 ( 6) GATTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrII:36233-36607 ( 31) GATTTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrXVI:581815-582326 ( 45) TTGTTGGCGCAATCGGTAGCGCGTATGACT 1 chrX:414788-415217 ( 17) TTGTTGGCGCAATCGGTAGCGCGTATGACT 1 chrVII:122070-122470 ( 52) TTGTTGGCGCAATCGGTAGCGCGTATGACT 1 chrV:435581-436008 ( 48) TTGTTGGCGCAATCGGTAGCGCGTATGACT 1 chrIV:1351999-1353058 ( 28) TTGTTGGCGCAATCGGTAGCGCGTATGACT 1 chrIV:1201522-1202044 ( 20) TTGTTGGCGCAATCGGTAGCGCGTATGACT 1 chrXVI:856737-857153 ( 10) CGTGTGGCGTAGTCGGTAGCGCGCTCCCTT 1 chrXII:656838-657196 ( 7) CGTGTGGCGTAGTCGGTAGCGCGCTCCCTT 1 chrVII:794236-794568 ( 68) CACATGGCGCAGTTGGTAGCGCGCTTCCCT 1 chrV:288166-288791 ( 64) ACTATGGCCGAGTGGTTAAGGCGACAGACT 1 chrXIV:602094-602542 ( 47) CTCTTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrXII:734620-734978 ( 56) CTCTTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrV:551069-551581 ( 51) CTCTTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrIX:183314-183710 ( 19) CTCTTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrIV:667806-668266 ( 62) CTCTTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrXII:605143-605622 ( 68) CGTGTAGCTCAGTGGTTAGAGCTTCGTGCT 1 chrXIII:259008-259451 ( 28) AACTTGGCCGAGTGGTTAAGGCGAAAGATT 1 chrXII:167713-168240 ( 67) AACTTGGCCGAGTGGTTAAGGCGAAAGATT 1 chrXV:353853-354309 ( 50) TCTATGGCCAAGTTGGTAAGGCGCCACACT 1 chrXIII:586318-587049 ( 44) TTCGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrXI:307938-308447 ( 43) TTCGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrX:378202-378579 ( 23) TTCGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrVII:823339-823725 ( 3) TTCGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrV:469248-469653 ( 60) TTCGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrV:438550-438947 ( 5) TTCGTGGTCTAGTCGGTTATGGCATCTGCT 1 chrXII:962844-963270 ( 16) GGGTTGGCCGAGTGGTCTAAGGCGGCAGAC 1 chrXI:83983-84423 ( 58) GGGTTGGCCGAGTGGTCTAAGGCGGCAGAC 1 chrX:424245-424722 ( 50) GGGTTGGCCGAGTGGTCTAAGGCGGCAGAC 1 chrIV:519654-519907 ( 16) GGGTTGGCCGAGTGGTCTAAGGCGGCAGAC 1 chrXII:592324-592817 ( 67) AGTTTGGCCGAGTGGTTTAAGGCGTCAGAT 1 chrX:617704-618152 ( 44) AGTTTGGCCGAGTGGTTTAAGGCGTCAGAT 1 chrXIII:463337-463847 ( 15) GTGATAGTTTAATGGTCAGAATGGGCGCTT 1 chrXII:426884-427448 ( 19) GTGATAGTTTAATGGTCAGAATGGGCGCTT 1 chrX:374184-374796 ( 23) GTGATAGTTTAATGGTCAGAATGGGCGCTT 1 chrX:355179-355766 ( 37) GTGATAGTTTAATGGTCAGAATGGGCGCTT 1 chrVII:544404-544879 ( 25) GTGATAGTTTAATGGTCAGAATGGGCGCTT 1 chrVII:531384-531811 ( 66) GTGATAGTTTAATGGTCAGAATGGGCGCTT 1 chrIX:336145-336616 ( 58) GTGATAGTTTAATGGTCAGAATGGGCGCTT 1 chrII:405695-406215 ( 58) GTGATAGTTTAATGGTCAGAATGGGCGCTT 1 chrV:130826-131401 ( 58) TTTATAGTGTAGTGGTTATCACTTTCGGTT 1 chrII:350603-351049 ( 54) TTTATAGTGTAGTGGTTATCACTTTCGGTT 1 chrXIII:808047-808516 ( 54) CCTATAGTGTAGTGGTTATCACTTTCGGTT 1 chrXII:448497-448942 ( 20) CCTATAGTGTAGTGGTTATCACTTTCGGTT 1 chrIV:802569-802999 ( 36) CCTATAGTGTAGTGGTTATCACTTTCGGTT 1 chrIII:168149-168546 ( 43) CCTATAGTGTAGTGGTTATCACTTTCGGTT 1 chrXIV:442794-443253 ( 36) TGTTTGGCCGAGCGGTCTAAGGCGCCTGAT 1 chrX:422720-423236 ( 12) TCAGTAGCTCAGTAGGAAGAGCGTCAGTCT 1 chrX:390830-391322 ( 57) TCAGTAGCTCAGTAGGAAGAGCGTCAGTCT 1 chrXV:110853-111208 ( 21) CGGTTAGTGTAGTGGTTATCATCCCACCCT 1 chrXIV:6618-6998 ( 10) GGTATGGTTGAGTGGGGCAGGGTAACGAGT 1 chrVIII:556605-556920 ( 41) GGTATGGTTGAGTGGGGCAGGGTAACGAGT 1 chrXI:74418-74815 ( 61) TCCATGGCCAAGTTGGTTAAGGCGTGCGAC 1 chrIII:127496-127914 ( 64) TCCATGGCCAAGTTGGTTAAGGCGTGCGAC 1 chrIV:1150731-1151160 ( 14) CCAGTGGCCGAGTGGTTAAGGCGATGCCTG 1 chrIV:1256760-1257293 ( 71) AAAGTGGTTCAGTGGTTAGAATTCATGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBDTRGYBYAGTKGKTARAGSSNYCGVYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40399 bayes= 10.5569 E= 1.1e-206 -182 54 74 -2 -71 -32 -8 64 -241 74 54 11 -2 -1277 39 55 -1277 -1277 -1277 172 40 -1277 161 -1277 -1277 -1277 235 -1277 -1277 174 -1277 18 -1277 112 22 18 -282 117 -8 11 172 -1277 -1277 -1277 -16 -1277 189 -1277 -1277 -378 -1277 170 -341 3 135 -16 -1277 -1277 235 -1277 -1277 -1277 143 64 -341 39 -32 88 118 -278 -1277 -9 35 -146 117 -160 76 22 -20 -182 -41 -1277 197 -1277 -1277 147 68 -109 -1277 61 150 -109 -32 12 31 -2 -95 92 -20 -2 -41 143 -178 -71 -182 -78 180 -141 -2 3 103 -160 -124 131 -97 -9 -1277 -32 -378 145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBDTRGYBYAGTKGKTARAGSSNYCGVYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 70 E= 1.1e-206 0.085714 0.285714 0.328571 0.300000 0.185714 0.157143 0.185714 0.471429 0.057143 0.328571 0.285714 0.328571 0.300000 0.000000 0.257143 0.442857 0.000000 0.000000 0.000000 1.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.657143 0.000000 0.342857 0.000000 0.428571 0.228571 0.342857 0.042857 0.442857 0.185714 0.328571 1.000000 0.000000 0.000000 0.000000 0.271429 0.000000 0.728571 0.000000 0.000000 0.014286 0.000000 0.985714 0.028571 0.200000 0.500000 0.271429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.528571 0.471429 0.028571 0.257143 0.157143 0.557143 0.685714 0.028571 0.000000 0.285714 0.385714 0.071429 0.442857 0.100000 0.514286 0.228571 0.171429 0.085714 0.228571 0.000000 0.771429 0.000000 0.000000 0.542857 0.314286 0.142857 0.000000 0.300000 0.557143 0.142857 0.242857 0.214286 0.242857 0.300000 0.157143 0.371429 0.171429 0.300000 0.228571 0.528571 0.057143 0.185714 0.085714 0.114286 0.685714 0.114286 0.300000 0.200000 0.400000 0.100000 0.128571 0.485714 0.100000 0.285714 0.000000 0.157143 0.014286 0.828571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBDTRGYBYAGTKGKTARAGSSNYCGVYT MEME-2 regular expression -------------------------------------------------------------------------------- [GTC]T[CTG][TAG]T[GA]G[CT][CTG][CT]A[GA]T[GTC]G[GT][TC][AT][GA][AC][GA][CG][GC][TAGC][CT][CA]G[GAC][CT]T -------------------------------------------------------------------------------- Time 597.90 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTWSRAGTCSRAMGCKCTACCAYTRMGCC MEME-3 width = 30 sites = 13 llr = 379 E-value = 2.5e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTWSRAGTCSRAMGCKCTACCAYTRMGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 93:5:5a2::2683:::::8::a::56::: pos.-specific C ::::32::174:25:a:8::aa:5::4:a7 probability G 1:::64:8:3331:a:4::2:::::5:a:: matrix T :7a51:::9:21:2::62a1:::5a::::3 bits 2.3 ** ** ** 2.1 ** ** ** 1.9 ** ** ** 1.6 * ** ** ** *** * ** Relative 1.4 * * **** ** ** *** * ** Entropy 1.2 * * * **** ** ** ****** *** (42.0 bits) 0.9 *** * **** * **************** 0.7 ********** ******************* 0.5 ********** ******************* 0.2 ****************************** 0.0 ------------------------------ Multilevel ATTAGAAGTCCAACGCTCTACCACTGAGCC consensus A TCG GGG A G T AC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTWSRAGTCSRAMGCKCTACCAYTRMGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:379057-379660 + 63 1.53e-15 TCCAAGATTT AATTGGAGTCGAAAGCTCTACCATTGAGCC ACCGCTTC chrXI:302704-303210 - 19 1.53e-15 TCCAAGATTT AATTGGAGTCGAAAGCTCTACCATTGAGCC ACCGCTTCAT chrVII:878544-879055 + 29 1.53e-15 TCCAAGATTT AATTGGAGTCGAAAGCTCTACCATTGAGCC ACCGCTTCAT chrVII:287159-287683 + 47 1.53e-15 TCCAAGATTT AATTGGAGTCGAAAGCTCTACCATTGAGCC ACCGCTTCAT chrXVI:744062-744528 - 47 5.23e-15 CGACCTTTGC ATTACAAGTGCAACGCTCTACCACTAAGCT AAGGAGGCTT chrVIII:466813-467259 - 12 5.23e-15 CGACCTTTGC ATTACAAGTGCAACGCTCTACCACTAAGCT AAGGAGGCTA chrVII:1004032-1004423 - 47 5.23e-15 CGACCTTTGC ATTACAAGTGCAACGCTCTACCACTAAGCT AAGGAGGCAA chrVII:661533-661948 - 67 5.23e-15 TTGC ATTACAAGTGCAACGCTCTACCACTAAGCT AAGGAGGCAA chrXIII:131566-132120 + 66 1.41e-13 TAATCTTCTG ATTAGAAGTCAGACGCGTTGCCATTACGCC ACGCG chrXI:162327-162722 + 47 1.41e-13 TAATCTTCTG ATTAGAAGTCAGACGCGTTGCCATTACGCC ACGCGAGCTA chrXVI:435667-436170 + 59 3.63e-13 GGACCAACAG ATTTGCAATCTGCTGCGCTACCACTGCGCC ATACGAGCTT chrII:642840-643259 + 42 3.63e-13 GGACCAACAG ATTTGCAATCTGCTGCGCTACCACTGCGCC ATACGAGCTT chrIII:149734-150165 - 29 4.78e-12 GGACATCAGG GTTATGAGCCCTGCGCGCTTCCACTGCGCC ACGGCGCTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTWSRAGTCSRAMGCKCTACCAYTRMGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:379057-379660 1.5e-15 62_[+3]_8 chrXI:302704-303210 1.5e-15 18_[-3]_52 chrVII:878544-879055 1.5e-15 28_[+3]_42 chrVII:287159-287683 1.5e-15 46_[+3]_24 chrXVI:744062-744528 5.2e-15 46_[-3]_24 chrVIII:466813-467259 5.2e-15 11_[-3]_59 chrVII:1004032-1004423 5.2e-15 46_[-3]_24 chrVII:661533-661948 5.2e-15 66_[-3]_4 chrXIII:131566-132120 1.4e-13 65_[+3]_5 chrXI:162327-162722 1.4e-13 46_[+3]_24 chrXVI:435667-436170 3.6e-13 58_[+3]_12 chrII:642840-643259 3.6e-13 41_[+3]_29 chrIII:149734-150165 4.8e-12 28_[-3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTWSRAGTCSRAMGCKCTACCAYTRMGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTWSRAGTCSRAMGCKCTACCAYTRMGCC width=30 seqs=13 chrXIII:379057-379660 ( 63) AATTGGAGTCGAAAGCTCTACCATTGAGCC 1 chrXI:302704-303210 ( 19) AATTGGAGTCGAAAGCTCTACCATTGAGCC 1 chrVII:878544-879055 ( 29) AATTGGAGTCGAAAGCTCTACCATTGAGCC 1 chrVII:287159-287683 ( 47) AATTGGAGTCGAAAGCTCTACCATTGAGCC 1 chrXVI:744062-744528 ( 47) ATTACAAGTGCAACGCTCTACCACTAAGCT 1 chrVIII:466813-467259 ( 12) ATTACAAGTGCAACGCTCTACCACTAAGCT 1 chrVII:1004032-1004423 ( 47) ATTACAAGTGCAACGCTCTACCACTAAGCT 1 chrVII:661533-661948 ( 67) ATTACAAGTGCAACGCTCTACCACTAAGCT 1 chrXIII:131566-132120 ( 66) ATTAGAAGTCAGACGCGTTGCCATTACGCC 1 chrXI:162327-162722 ( 47) ATTAGAAGTCAGACGCGTTGCCATTACGCC 1 chrXVI:435667-436170 ( 59) ATTTGCAATCTGCTGCGCTACCACTGCGCC 1 chrII:642840-643259 ( 42) ATTTGCAATCTGCTGCGCTACCACTGCGCC 1 chrIII:149734-150165 ( 29) GTTATGAGCCCTGCGCGCTTCCACTGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTWSRAGTCSRAMGCKCTACCAYTRMGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40399 bayes= 11.3566 E= 2.5e-053 160 -1035 -135 -1035 2 -1035 -1035 119 -1035 -1035 -1035 172 83 -1035 -1035 60 -1035 65 165 -198 60 -35 97 -1035 172 -1035 -1035 -1035 -98 -1035 211 -1035 -1035 -135 -1035 160 -1035 182 65 -1035 -98 97 65 -98 102 -1035 65 -198 134 -35 -135 -1035 2 145 -1035 -98 -1035 -1035 235 -1035 -1035 235 -1035 -1035 -1035 -1035 97 102 -1035 211 -1035 -98 -1035 -1035 -1035 172 134 -1035 -35 -198 -1035 235 -1035 -1035 -1035 235 -1035 -1035 172 -1035 -1035 -1035 -1035 145 -1035 60 -1035 -1035 -1035 172 60 -1035 145 -1035 102 97 -1035 -1035 -1035 -1035 235 -1035 -1035 235 -1035 -1035 -1035 182 -1035 2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTWSRAGTCSRAMGCKCTACCAYTRMGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 13 E= 2.5e-053 0.923077 0.000000 0.076923 0.000000 0.307692 0.000000 0.000000 0.692308 0.000000 0.000000 0.000000 1.000000 0.538462 0.000000 0.000000 0.461538 0.000000 0.307692 0.615385 0.076923 0.461538 0.153846 0.384615 0.000000 1.000000 0.000000 0.000000 0.000000 0.153846 0.000000 0.846154 0.000000 0.000000 0.076923 0.000000 0.923077 0.000000 0.692308 0.307692 0.000000 0.153846 0.384615 0.307692 0.153846 0.615385 0.000000 0.307692 0.076923 0.769231 0.153846 0.076923 0.000000 0.307692 0.538462 0.000000 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.384615 0.615385 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 0.000000 1.000000 0.769231 0.000000 0.153846 0.076923 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.538462 0.000000 0.461538 0.000000 0.000000 0.000000 1.000000 0.461538 0.000000 0.538462 0.000000 0.615385 0.384615 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.692308 0.000000 0.307692 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTWSRAGTCSRAMGCKCTACCAYTRMGCC MEME-3 regular expression -------------------------------------------------------------------------------- A[TA]T[AT][GC][AG]AGT[CG][CG][AG]A[CA]GC[TG]CTACCA[CT]T[GA][AC]GC[CT] -------------------------------------------------------------------------------- Time 873.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:65829-66365 6.50e-01 100 chrI:71808-73282 4.94e-01 100 chrI:81887-82331 4.12e-01 100 chrI:130764-131900 9.69e-01 100 chrI:138955-139369 1.20e-05 55_[+1(2.37e-07)]_16 chrI:142133-143657 9.61e-03 100 chrI:166169-166565 2.86e-07 [+1(2.30e-11)]_71 chrI:181122-181477 7.73e-01 100 chrI:182105-183175 9.74e-01 100 chrII:9462-9838 6.70e-05 44_[+1(1.90e-08)]_27 chrII:36233-36607 1.36e-07 30_[+2(5.06e-11)]_40 chrII:44242-45340 9.42e-01 100 chrII:60806-61269 3.47e-01 100 chrII:61460-61653 2.45e-02 65_[+2(4.18e-05)]_5 chrII:89671-90127 7.89e-01 100 chrII:138360-140111 3.87e-02 100 chrII:165086-165402 5.62e-01 100 chrII:167569-169640 7.42e-01 100 chrII:181338-181681 7.83e-01 100 chrII:197286-197838 6.52e-09 33_[+1(5.58e-13)]_38 chrII:226970-227337 3.80e-08 31_[+1(1.91e-10)]_40 chrII:266200-266893 9.47e-01 100 chrII:326466-327064 1.78e-05 69_[-1(2.54e-09)]_2 chrII:332234-332974 6.00e-01 100 chrII:333337-334226 1.91e-02 32_[-2(1.18e-05)]_38 chrII:347426-347971 1.89e-03 16_[+1(4.55e-07)]_55 chrII:350603-351049 1.29e-05 53_[+2(3.59e-08)]_17 chrII:373565-375507 1.63e-01 100 chrII:405695-406215 3.14e-11 22_[+1(1.21e-09)]_6_[+2(1.76e-08)]_\ 13 chrII:413754-415237 9.78e-01 100 chrII:415485-416629 2.68e-01 100 chrII:476876-477765 2.12e-01 100 chrII:592270-593355 1.43e-01 100 chrII:603910-606137 1.40e-01 100 chrII:642840-643259 3.21e-17 [-1(1.69e-10)]_12_[+3(3.63e-13)]_29 chrII:644933-645426 1.86e-01 100 chrIII:65-605 2.81e-01 100 chrIII:834-1054 7.29e-01 100 chrIII:30570-31164 4.73e-01 100 chrIII:48712-50158 3.49e-01 100 chrIII:82373-82666 1.86e-01 100 chrIII:90847-91116 9.44e-05 19_[+1(7.41e-08)]_52 chrIII:107190-107810 8.01e-01 100 chrIII:123224-123814 2.56e-01 100 chrIII:127496-127914 1.11e-03 63_[+2(2.87e-07)]_7 chrIII:137791-138956 8.30e-02 100 chrIII:142406-142948 1.15e-08 66_[-1(3.84e-13)]_5 chrIII:149734-150165 5.77e-11 28_[-3(4.78e-12)]_12_[+1(7.37e-06)]_\ 1 chrIII:151056-151518 2.81e-07 39_[-1(5.28e-11)]_32 chrIII:163487-163869 8.61e-01 100 chrIII:168149-168546 1.61e-05 42_[-2(4.61e-08)]_28 chrIII:177311-178781 2.62e-01 100 chrIII:221404-223227 3.63e-01 100 chrIII:227757-228386 1.00e+00 100 chrIII:294960-295881 9.05e-01 100 chrIII:314974-316594 7.11e-02 100 chrIV:9-242 4.67e-01 100 chrIV:45186-45917 2.58e-01 100 chrIV:83317-83798 4.88e-04 34_[+2(1.69e-05)]_36 chrIV:117141-117788 4.30e-01 100 chrIV:129804-131008 4.65e-01 100 chrIV:207208-210552 2.94e-01 100 chrIV:216548-218034 9.75e-03 48_[-1(1.43e-05)]_23 chrIV:221686-222339 1.50e-01 100 chrIV:229143-230763 2.15e-01 100 chrIV:307995-308515 4.92e-01 100 chrIV:321657-321969 8.90e-01 100 chrIV:331050-332558 9.63e-01 100 chrIV:340583-341657 3.72e-01 100 chrIV:357915-358420 5.19e-01 100 chrIV:359277-359777 4.91e-01 100 chrIV:410174-410829 2.73e-01 100 chrIV:411260-412925 9.14e-01 100 chrIV:434049-434866 2.41e-01 100 chrIV:437578-438109 1.52e-07 38_[+1(8.74e-10)]_33 chrIV:465179-465755 8.64e-01 100 chrIV:465967-467347 6.21e-01 100 chrIV:488059-489126 4.55e-01 100 chrIV:490961-491295 2.40e-01 100 chrIV:491453-492775 8.61e-01 100 chrIV:519654-519907 2.36e-06 15_[+2(9.85e-09)]_55 chrIV:520748-521379 1.51e-05 8_[+1(2.29e-09)]_63 chrIV:538845-539428 6.02e-01 100 chrIV:568696-569574 1.82e-01 100 chrIV:578939-580442 5.77e-01 100 chrIV:600851-602338 8.87e-01 100 chrIV:619734-620200 6.39e-06 44_[-1(4.42e-10)]_27 chrIV:644824-645370 2.44e-01 100 chrIV:667806-668266 4.29e-14 13_[-1(9.52e-12)]_19_[-2(7.02e-10)]_\ 9 chrIV:757511-758231 7.87e-01 100 chrIV:802569-802999 1.61e-05 35_[-2(4.61e-08)]_35 chrIV:835773-836305 7.50e-01 100 chrIV:884257-884613 6.73e-01 100 chrIV:946139-946622 4.12e-01 100 chrIV:980653-981158 7.87e-01 100 chrIV:992721-993556 7.60e-01 100 chrIV:1013419-1013958 6.17e-01 100 chrIV:1016986-1017498 1.36e-07 7_[-1(8.96e-11)]_64 chrIV:1075094-1075756 1.82e-01 100 chrIV:1094779-1094992 3.78e-01 100 chrIV:1095165-1095655 1.02e-11 2_[-1(1.75e-07)]_37_[-2(2.60e-11)]_\ 2 chrIV:1150731-1151160 5.88e-06 13_[-2(3.42e-07)]_57 chrIV:1162941-1164648 4.74e-01 100 chrIV:1175742-1176104 7.57e-06 6_[+1(2.07e-09)]_65 chrIV:1201522-1202044 8.59e-12 19_[+2(1.75e-10)]_18_[+1(7.92e-07)]_\ 4 chrIV:1236502-1237959 5.72e-01 100 chrIV:1256760-1257293 1.04e-11 24_[-1(8.18e-12)]_17_[-2(5.27e-07)] chrIV:1300836-1301325 4.15e-01 100 chrIV:1305415-1305800 7.97e-02 100 chrIV:1351999-1353058 3.92e-08 27_[-2(1.75e-10)]_43 chrIV:1354354-1355990 6.31e-01 100 chrIV:1359419-1359853 9.92e-01 100 chrIV:1401074-1402494 6.62e-01 100 chrIV:1429491-1429922 1.82e-01 100 chrIV:1450840-1451551 6.39e-01 100 chrIV:1461450-1461850 6.37e-02 100 chrIV:1466695-1468466 6.78e-01 100 chrIV:1489322-1490388 7.66e-01 100 chrIX:68013-68992 5.03e-01 100 chrIX:98554-99439 4.61e-01 100 chrIX:99625-100321 3.59e-01 100 chrIX:174545-175220 7.56e-01 100 chrIX:183314-183710 4.45e-06 18_[-2(7.02e-10)]_52 chrIX:197323-197747 9.74e-01 100 chrIX:210653-211122 8.67e-01 100 chrIX:248470-249338 3.00e-07 55_[+1(6.24e-10)]_16 chrIX:254229-254559 6.36e-01 100 chrIX:255107-255856 6.88e-01 100 chrIX:257366-257946 2.26e-01 100 chrIX:299988-300471 3.94e-07 41_[-1(1.49e-10)]_30 chrIX:315999-316592 5.87e-01 100 chrIX:322381-324393 6.38e-01 100 chrIX:325737-326122 5.01e-01 100 chrIX:336145-336616 2.12e-12 11_[-1(6.90e-11)]_17_[-2(1.76e-08)]_\ 13 chrIX:370223-370605 2.52e-02 100 chrIX:370957-371155 6.54e-01 100 chrIX:391386-392138 3.19e-03 100 chrV:51817-52073 5.08e-01 100 chrV:53498-54014 2.26e-01 100 chrV:61067-62147 4.81e-01 100 chrV:67186-69326 3.65e-01 100 chrV:78089-79441 8.47e-02 100 chrV:85100-86957 7.12e-01 100 chrV:99896-100322 1.32e-01 100 chrV:117424-118300 6.51e-01 100 chrV:130826-131401 1.69e-11 11_[-1(1.49e-10)]_17_[-2(3.59e-08)]_\ 13 chrV:135048-136037 8.12e-01 100 chrV:138455-139817 4.13e-01 100 chrV:140170-140919 5.87e-01 100 chrV:176856-177450 9.36e-06 45_[+1(6.99e-10)]_26 chrV:207359-207547 1.13e-05 3_[+1(8.74e-10)]_68 chrV:249795-250504 2.20e-01 100 chrV:270086-270661 1.96e-01 100 chrV:288166-288791 2.45e-14 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chrVI:157837-158201 8.02e-07 5_[-2(5.06e-11)]_65 chrVI:162039-162598 9.14e-08 8_[+1(3.72e-12)]_63 chrVI:167279-167658 8.00e-03 21_[+2(1.69e-05)]_49 chrVI:180645-181269 1.63e-06 59_[-1(1.02e-10)]_12 chrVI:191173-191763 7.08e-02 100 chrVI:210328-212070 5.75e-01 100 chrVI:220125-222412 1.00e+00 100 chrVI:223238-224152 2.96e-01 100 chrVI:226586-227291 7.83e-01 100 chrVII:262-1112 9.19e-01 100 chrVII:110366-110786 9.58e-01 100 chrVII:115322-115724 1.32e-11 17_[+2(3.18e-13)]_53 chrVII:122070-122470 3.78e-08 51_[+2(1.75e-10)]_19 chrVII:149112-149505 9.94e-01 100 chrVII:184875-185919 8.21e-04 27_[-1(3.76e-05)]_44 chrVII:205316-206172 5.16e-01 100 chrVII:254102-254724 9.32e-01 100 chrVII:277042-278687 1.30e-01 100 chrVII:279033-280445 4.58e-01 100 chrVII:287159-287683 2.90e-12 46_[+3(1.53e-15)]_24 chrVII:310390-312228 8.42e-01 100 chrVII:319230-320097 6.65e-01 100 chrVII:328407-329359 9.12e-01 100 chrVII:364876-366493 5.46e-01 100 chrVII:370795-371481 2.68e-02 100 chrVII:401440-401618 2.80e-06 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(3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************