******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SOK2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:301092-302063 1.0000 100 chrVIII:237701-238137 1.0000 100 chrXV:80314-81514 1.0000 100 chrVII:55585-56142 1.0000 100 chrXI:280590-280881 1.0000 100 chrI:81921-82281 1.0000 100 chrIV:1354332-1355974 1.0000 100 chrXVI:828392-829491 1.0000 100 chrXIII:760676-760936 1.0000 100 chrVII:426853-427630 1.0000 100 chrVII:364871-366774 1.0000 100 chrXI:357074-357286 1.0000 100 chrIV:591653-593078 1.0000 100 chrII:702134-702517 1.0000 100 chrXVI:435622-436166 1.0000 100 chrIV:1075260-1075743 1.0000 100 chrXI:578722-579590 1.0000 100 chrIX:322597-324379 1.0000 100 chrXIV:585394-586911 1.0000 100 chrIV:913939-914858 1.0000 100 chrXII:447775-448933 1.0000 100 chrIX:300018-300475 1.0000 100 chrII:167595-169739 1.0000 100 chrXI:458013-458945 1.0000 100 chrXVI:74980-76732 1.0000 100 chrI:169383-170894 1.0000 100 chrXV:710124-710508 1.0000 100 chrXII:198378-199791 1.0000 100 chrVII:806116-807972 1.0000 100 chrXV:779723-781069 1.0000 100 chrXIII:225335-227886 1.0000 100 chrV:85066-87012 1.0000 100 chrXVI:591055-591634 1.0000 100 chrII:370943-377452 1.0000 100 chrI:182178-183131 1.0000 100 chrXV:670848-672259 1.0000 100 chrIV:690067-691133 1.0000 100 chrXIII:826425-826937 1.0000 100 chrVI:167238-167711 1.0000 100 chrXII:793782-797409 1.0000 100 chrVIII:174719-175719 1.0000 100 chrX:540896-540996 1.0000 100 chrVII:227350-228550 1.0000 100 chrVIII:388628-388998 1.0000 100 chrXII:930575-931850 1.0000 100 chrXIII:305751-307388 1.0000 100 chrXIV:241427-241714 1.0000 100 chrXIV:758620-759974 1.0000 100 chrVII:328398-329054 1.0000 100 chrXVI:775633-776028 1.0000 100 chrXIII:145915-147648 1.0000 100 chrIV:1461464-1461838 1.0000 100 chrXV:571718-572136 1.0000 100 chrXIII:296751-298933 1.0000 100 chrVII:828377-828972 1.0000 100 chrII:36252-36850 1.0000 100 chrX:355196-355296 1.0000 100 chrVI:98808-99119 1.0000 100 chrXVI:296940-297319 1.0000 100 chrV:490685-492569 1.0000 100 chrXI:307877-308464 1.0000 100 chrXII:903364-903673 1.0000 100 chrXII:47474-49185 1.0000 100 chrXI:46382-46996 1.0000 100 chrV:135219-136049 1.0000 100 chrIV:802572-803022 1.0000 100 chrVI:226384-226916 1.0000 100 chrXIII:419849-420839 1.0000 100 chrXIV:104599-105102 1.0000 100 chrXIII:131635-132063 1.0000 100 chrXII:567936-571049 1.0000 100 chrVII:951332-951794 1.0000 100 chrXI:140743-142799 1.0000 100 chrXI:517217-518348 1.0000 100 chrXII:1028221-1028603 1.0000 100 chrII:592262-593324 1.0000 100 chrV:151712-153776 1.0000 100 chrXII:423799-424553 1.0000 100 chrIV:946153-946635 1.0000 100 chrXII:201622-202706 1.0000 100 chrVI:224338-225997 1.0000 100 chrXVI:560028-560488 1.0000 100 chrV:438477-438965 1.0000 100 chrXIV:721164-723233 1.0000 100 chrVII:702756-704276 1.0000 100 chrXII:403936-404433 1.0000 100 chrXVI:431775-432670 1.0000 100 chrXII:932095-932523 1.0000 100 chrXV:903519-905793 1.0000 100 chrVII:1003956-1004439 1.0000 100 chrII:555742-558479 1.0000 100 chrXI:21316-21818 1.0000 100 chrXV:987044-987851 1.0000 100 chrVII:700301-701260 1.0000 100 chrXV:168111-168510 1.0000 100 chrVII:561286-561719 1.0000 100 chrXVI:239212-239514 1.0000 100 chrIII:84-1073 1.0000 100 chrXVI:819109-820303 1.0000 100 chrVIII:292778-293524 1.0000 100 chrV:321950-323099 1.0000 100 chrXI:617626-619293 1.0000 100 chrXVI:622330-622971 1.0000 100 chrXIII:26225-26515 1.0000 100 chrXII:280738-281737 1.0000 100 chrXVI:770339-771105 1.0000 100 chrVII:986406-987850 1.0000 100 chrXVI:927653-928431 1.0000 100 chrXIII:67483-68028 1.0000 100 chrXV:92679-94789 1.0000 100 chrXIII:168233-169036 1.0000 100 chrIV:1359155-1361251 1.0000 100 chrV:305819-307531 1.0000 100 chrV:504882-505263 1.0000 100 chrIX:254957-257133 1.0000 100 chrXVI:930309-931223 1.0000 100 chrXV:504904-505476 1.0000 100 chrXII:948977-953667 1.0000 100 chrIV:1305441-1305899 1.0000 100 chrXV:409068-409971 1.0000 100 chrVII:555071-558243 1.0000 100 chrXIII:653521-653855 1.0000 100 chrVIII:49962-51414 1.0000 100 chrIV:368037-369202 1.0000 100 chrII:642833-643256 1.0000 100 chrVII:345785-346741 1.0000 100 chrXV:977135-978371 1.0000 100 chrXIII:768171-768434 1.0000 100 chrXV:796810-797755 1.0000 100 chrX:391791-391891 1.0000 100 chrVII:422882-423500 1.0000 100 chrX:290829-290929 1.0000 100 chrXII:605125-605599 1.0000 100 chrIII:141985-142934 1.0000 100 chrII:413196-415314 1.0000 100 chrXIII:661481-662250 1.0000 100 chrXIV:499181-502768 1.0000 100 chrIV:884257-884956 1.0000 100 chrIV:550499-551558 1.0000 100 chrXI:313178-314017 1.0000 100 chrXI:202475-203256 1.0000 100 chrIX:391406-392142 1.0000 100 chrXI:364410-365472 1.0000 100 chrXV:638816-639546 1.0000 100 chrX:227687-227787 1.0000 100 chrXIII:650901-653049 1.0000 100 chrVII:255182-255742 1.0000 100 chrII:255018-255761 1.0000 100 chrX:662548-662648 1.0000 100 chrVII:823347-823729 1.0000 100 chrXIII:905695-906417 1.0000 100 chrVII:765879-767099 1.0000 100 chrXIII:472890-473274 1.0000 100 chrXII:1017686-1019362 1.0000 100 chrVIII:34337-36450 1.0000 100 chrIX:380143-380893 1.0000 100 chrII:162969-164188 1.0000 100 chrVIII:411006-411766 1.0000 100 chrXVI:424895-425671 1.0000 100 chrXII:374197-374662 1.0000 100 chrVII:845462-846102 1.0000 100 chrXIII:282752-283166 1.0000 100 chrV:266111-268190 1.0000 100 chrVI:106499-106823 1.0000 100 chrIV:1095140-1095631 1.0000 100 chrXII:257725-259546 1.0000 100 chrIV:509551-509967 1.0000 100 chrVII:930695-931641 1.0000 100 chrX:348748-348848 1.0000 100 chrI:65830-67899 1.0000 100 chrVIII:531012-531716 1.0000 100 chrXV:113598-113882 1.0000 100 chrXI:164944-165609 1.0000 100 chrXIV:88899-90068 1.0000 100 chrVII:876197-879037 1.0000 100 chrXIV:569630-570079 1.0000 100 chrX:172666-172766 1.0000 100 chrXIV:442757-444777 1.0000 100 chrX:90078-90178 1.0000 100 chrV:237391-239023 1.0000 100 chrXII:855216-857662 1.0000 100 chrXVI:840436-841079 1.0000 100 chrV:66733-69652 1.0000 100 chrVII:881663-884040 1.0000 100 chrXVI:821582-824275 1.0000 100 chrXV:594075-594635 1.0000 100 chrX:605992-606092 1.0000 100 chrXV:40366-40655 1.0000 100 chrX:68978-69078 1.0000 100 chrXII:449234-450389 1.0000 100 chrXII:347989-348775 1.0000 100 chrVII:599384-601431 1.0000 100 chrXII:728171-730357 1.0000 100 chrXI:353908-356892 1.0000 100 chrXVI:39098-39461 1.0000 100 chrIV:1080402-1081055 1.0000 100 chrXIV:771627-772552 1.0000 100 chrIII:137699-139010 1.0000 100 chrIV:1506992-1507727 1.0000 100 chrX:25762-25862 1.0000 100 chrXV:24237-24821 1.0000 100 chrIV:568703-569366 1.0000 100 chrXII:1051909-1052203 1.0000 100 chrXIV:518781-519115 1.0000 100 chrI:68306-68762 1.0000 100 chrIV:835775-836269 1.0000 100 chrV:99917-100356 1.0000 100 chrVIII:475297-475909 1.0000 100 chrVI:191213-191763 1.0000 100 chrXIV:560391-561113 1.0000 100 chrXVI:519870-520525 1.0000 100 chrII:326437-327096 1.0000 100 chrIII:227740-229448 1.0000 100 chrXII:92349-92726 1.0000 100 chrXV:226430-226897 1.0000 100 chrXII:805786-807184 1.0000 100 chrXII:783860-784669 1.0000 100 chrIII:107059-107858 1.0000 100 chrXI:302715-303242 1.0000 100 chrXV:216291-216715 1.0000 100 chrXIII:510620-512276 1.0000 100 chrX:415710-415810 1.0000 100 chrXVI:608117-608739 1.0000 100 chrIV:555333-556695 1.0000 100 chrIV:1164909-1166905 1.0000 100 chrXIII:755096-756907 1.0000 100 chrV:176910-177513 1.0000 100 chrIV:216554-218097 1.0000 100 chrV:363671-364072 1.0000 100 chrII:611925-614964 1.0000 100 chrIV:1268665-1271120 1.0000 100 chrXV:832240-833159 1.0000 100 chrVI:210299-210880 1.0000 100 chrXV:680269-680970 1.0000 100 chrXI:513127-513591 1.0000 100 chrV:138448-142396 1.0000 100 chrI:185572-186331 1.0000 100 chrV:550810-551581 1.0000 100 chrXIII:309586-310104 1.0000 100 chrXIII:872697-872994 1.0000 100 chrXI:83999-84441 1.0000 100 chrXI:163284-164577 1.0000 100 chrIV:1344663-1345954 1.0000 100 chrIV:1256826-1257294 1.0000 100 chrXV:347321-347895 1.0000 100 chrIV:234224-234611 1.0000 100 chrXVI:744067-744619 1.0000 100 chrIV:116279-118251 1.0000 100 chrXV:423604-425086 1.0000 100 chrX:119997-120097 1.0000 100 chrIX:25946-26978 1.0000 100 chrXI:146814-147505 1.0000 100 chrXII:187231-187603 1.0000 100 chrIV:1488357-1490709 1.0000 100 chrXII:711502-712881 1.0000 100 chrVII:856480-857644 1.0000 100 chrXVI:701840-702357 1.0000 100 chrIV:132653-133517 1.0000 100 chrIV:1016957-1017493 1.0000 100 chrXII:924071-924234 1.0000 100 chrXV:382601-384347 1.0000 100 chrIV:220999-222297 1.0000 100 chrXV:976384-976963 1.0000 100 chrXV:980170-981148 1.0000 100 chrXII:924431-924842 1.0000 100 chrII:662090-662827 1.0000 100 chrXVI:585674-588192 1.0000 100 chrXIII:431668-432563 1.0000 100 chrXIV:355069-355659 1.0000 100 chrXVI:627329-627750 1.0000 100 chrXI:107430-110488 1.0000 100 chrV:76942-80023 1.0000 100 chrXIII:162949-164353 1.0000 100 chrVII:786945-788745 1.0000 100 chrXV:1027763-1029093 1.0000 100 chrVI:30224-32424 1.0000 100 chrVI:137179-137693 1.0000 100 chrI:141643-143718 1.0000 100 chrXIII:195932-196302 1.0000 100 chrXI:38670-39312 1.0000 100 chrXIV:10070-10417 1.0000 100 chrXIV:661993-662525 1.0000 100 chrV:288161-288755 1.0000 100 chrVII:541722-542168 1.0000 100 chrXII:253111-255327 1.0000 100 chrVI:63977-65351 1.0000 100 chrIV:359368-359793 1.0000 100 chrX:378214-378314 1.0000 100 chrIV:437561-438123 1.0000 100 chrXI:558401-559489 1.0000 100 chrVII:533347-535177 1.0000 100 chrIII:157482-158037 1.0000 100 chrIV:1434400-1436084 1.0000 100 chrXVI:213065-216055 1.0000 100 chrVII:371151-371519 1.0000 100 chrXII:703743-704703 1.0000 100 chrXII:368739-372479 1.0000 100 chrXV:487442-487778 1.0000 100 chrXV:348682-349415 1.0000 100 chrXIV:725933-726375 1.0000 100 chrXV:907671-911623 1.0000 100 chrX:390792-390892 1.0000 100 chrXII:780585-781878 1.0000 100 chrIV:1301589-1302610 1.0000 100 chrXII:242189-243455 1.0000 100 chrX:196970-197070 1.0000 100 chrXI:463001-463955 1.0000 100 chrIX:96770-97607 1.0000 100 chrXIII:222255-223828 1.0000 100 chrII:251187-251835 1.0000 100 chrXII:1012019-1012491 1.0000 100 chrVII:287137-287643 1.0000 100 chrXV:1053857-1054590 1.0000 100 chrII:378799-379482 1.0000 100 chrXIV:426546-427289 1.0000 100 chrXIII:549881-553254 1.0000 100 chrX:702321-702421 1.0000 100 chrV:53546-53993 1.0000 100 chrX:549702-549802 1.0000 100 chrVI:53191-55671 1.0000 100 chrIII:262701-263180 1.0000 100 chrXI:381615-382461 1.0000 100 chrXI:74408-74877 1.0000 100 chrIV:538805-539554 1.0000 100 chrII:159784-160030 1.0000 100 chrIX:183303-183726 1.0000 100 chrX:233679-233779 1.0000 100 chrXV:836634-836941 1.0000 100 chrXV:27879-28167 1.0000 100 chrXIV:234257-235229 1.0000 100 chrIX:332004-334008 1.0000 100 chrXIII:808023-808536 1.0000 100 chrX:607907-608007 1.0000 100 chrVIII:126488-127773 1.0000 100 chrXV:390740-392705 1.0000 100 chrVIII:296664-297216 1.0000 100 chrXIII:372189-372656 1.0000 100 chrXV:700816-701149 1.0000 100 chrXI:260232-260879 1.0000 100 chrXIV:413504-416241 1.0000 100 chrXIII:267657-268306 1.0000 100 chrV:130815-131360 1.0000 100 chrXIII:320958-321313 1.0000 100 chrII:350599-351147 1.0000 100 chrXI:430590-433021 1.0000 100 chrXV:228127-228585 1.0000 100 chrXVI:640947-641738 1.0000 100 chrVIII:400917-401375 1.0000 100 chrXI:258083-260031 1.0000 100 chrXIV:61374-64611 1.0000 100 chrVII:483217-484053 1.0000 100 chrIII:168144-168546 1.0000 100 chrI:181132-181515 1.0000 100 chrVII:647847-648497 1.0000 100 chrXV:443450-444405 1.0000 100 chrIV:619708-620176 1.0000 100 chrIV:1352068-1353070 1.0000 100 chrVIII:385142-386972 1.0000 100 chrIV:1468786-1469174 1.0000 100 chrII:405682-406372 1.0000 100 chrXII:366042-366562 1.0000 100 chrIV:545764-546354 1.0000 100 chrIV:1330446-1330914 1.0000 100 chrXVI:731609-732289 1.0000 100 chrIV:1161448-1162099 1.0000 100 chrVI:82012-84536 1.0000 100 chrXVI:794474-796115 1.0000 100 chrXV:1049067-1049380 1.0000 100 chrIV:1449854-1451455 1.0000 100 chrXV:925192-925440 1.0000 100 chrXV:259300-260009 1.0000 100 chrVII:590714-593020 1.0000 100 chrVIII:451209-453207 1.0000 100 chrVIII:148967-149488 1.0000 100 chrV:460543-462224 1.0000 100 chrXIV:559196-559925 1.0000 100 chrIX:248574-249461 1.0000 100 chrXIV:576342-576513 1.0000 100 chrX:26160-26260 1.0000 100 chrVII:292-978 1.0000 100 chrXII:645257-646629 1.0000 100 chrX:181865-181965 1.0000 100 chrXIV:525072-525282 1.0000 100 chrVII:147990-149550 1.0000 100 chrXV:778207-779485 1.0000 100 chrXII:818507-820440 1.0000 100 chrXV:892145-892583 1.0000 100 chrXI:261056-262282 1.0000 100 chrXII:522609-523654 1.0000 100 chrVIII:74713-76341 1.0000 100 chrX:517660-517760 1.0000 100 chrXII:925011-925409 1.0000 100 chrIV:1236417-1238740 1.0000 100 chrV:241905-243296 1.0000 100 chrX:424256-424356 1.0000 100 chrXI:219724-220105 1.0000 100 chrVII:649690-650724 1.0000 100 chrXIV:350899-353033 1.0000 100 chrVIII:16137-18538 1.0000 100 chrXII:656822-657204 1.0000 100 chrXIII:586366-586911 1.0000 100 chrIII:151115-151516 1.0000 100 chrVII:436684-440045 1.0000 100 chrXV:160316-160742 1.0000 100 chrXIII:539965-541068 1.0000 100 chrXIV:574867-576164 1.0000 100 chrXV:899820-901267 1.0000 100 chrIV:339987-341634 1.0000 100 chrII:696561-697931 1.0000 100 chrXVI:209961-210475 1.0000 100 chrII:504510-504792 1.0000 100 chrIX:254234-254546 1.0000 100 chrXI:142976-144294 1.0000 100 chrIX:231255-232446 1.0000 100 chrVII:115326-115723 1.0000 100 chrV:435550-436004 1.0000 100 chrX:617713-617813 1.0000 100 chrVII:413101-413848 1.0000 100 chrVII:316698-317467 1.0000 100 chrXIII:761139-761367 1.0000 100 chrVII:650889-651305 1.0000 100 chrXVI:785599-786276 1.0000 100 chrV:302760-303411 1.0000 100 chrXIV:618180-618731 1.0000 100 chrXVI:699593-700721 1.0000 100 chrVI:19296-20060 1.0000 100 chrV:249788-250512 1.0000 100 chrXIII:119225-119556 1.0000 100 chrXI:67719-69430 1.0000 100 chrXII:566436-566939 1.0000 100 chrVIII:422893-423789 1.0000 100 chrXIII:278825-280584 1.0000 100 chrV:396161-398062 1.0000 100 chrIV:980716-981147 1.0000 100 chrIV:1239375-1240332 1.0000 100 chrXI:518652-521092 1.0000 100 chrI:33933-34488 1.0000 100 chrXIII:480366-480826 1.0000 100 chrXII:416606-416971 1.0000 100 chrXVI:880000-880573 1.0000 100 chrV:469278-469660 1.0000 100 chrVII:736184-736782 1.0000 100 chrVIII:505842-506193 1.0000 100 chrXV:312443-313328 1.0000 100 chrII:415539-416007 1.0000 100 chrXVI:901057-902015 1.0000 100 chrXIV:87370-87827 1.0000 100 chrXII:875195-875703 1.0000 100 chrVI:222878-224163 1.0000 100 chrXIII:407303-408960 1.0000 100 chrXIV:229486-230815 1.0000 100 chrXIV:716909-717152 1.0000 100 chrII:465892-467285 1.0000 100 chrXI:385130-385509 1.0000 100 chrV:27122-28798 1.0000 100 chrXIV:776562-777442 1.0000 100 chrVIII:134146-134691 1.0000 100 chrV:221042-222980 1.0000 100 chrIV:465166-465894 1.0000 100 chrXIII:352075-353210 1.0000 100 chrVII:730967-731406 1.0000 100 chrI:28218-29108 1.0000 100 chrV:351227-351722 1.0000 100 chrX:156082-156182 1.0000 100 chrXV:566044-566507 1.0000 100 chrXIII:379171-379623 1.0000 100 chrI:71613-73684 1.0000 100 chrV:268408-268678 1.0000 100 chrXII:282609-284010 1.0000 100 chrIV:541069-541991 1.0000 100 chrXVI:39660-41108 1.0000 100 chrXI:589794-592513 1.0000 100 chrII:624548-625970 1.0000 100 chrXII:1028846-1030351 1.0000 100 chrXV:663596-664096 1.0000 100 chrXIII:290572-291576 1.0000 100 chrX:157491-157591 1.0000 100 chrXI:158235-159841 1.0000 100 chrXVI:689346-689873 1.0000 100 chrVI:95477-95938 1.0000 100 chrV:42097-42713 1.0000 100 chrIII:315605-316410 1.0000 100 chrIV:322189-323617 1.0000 100 chrV:143507-144208 1.0000 100 chrII:9458-9871 1.0000 100 chrVII:779398-779967 1.0000 100 chrIX:325739-326125 1.0000 100 chrXII:36631-37630 1.0000 100 chrXIV:209768-210154 1.0000 100 chrXVI:338584-339440 1.0000 100 chrIV:392517-392833 1.0000 100 chrVII:122070-122615 1.0000 100 chrV:354692-355352 1.0000 100 chrXVI:280457-283257 1.0000 100 chrV:117244-118302 1.0000 100 chrXIV:738827-740145 1.0000 100 chrXII:167769-168232 1.0000 100 chrVII:705664-707184 1.0000 100 chrX:542796-542896 1.0000 100 chrIX:394318-396005 1.0000 100 chrXVI:572183-572723 1.0000 100 chrIX:370231-370734 1.0000 100 chrXII:975792-976184 1.0000 100 chrVII:401435-401613 1.0000 100 chrXII:837623-839531 1.0000 100 chrXIII:572704-573133 1.0000 100 chrVII:648728-649363 1.0000 100 chrII:44978-45330 1.0000 100 chrXV:841387-843061 1.0000 100 chrXV:673670-674035 1.0000 100 chrXIV:631615-632115 1.0000 100 chrVII:794194-794570 1.0000 100 chrXIII:388237-388753 1.0000 100 chrX:709803-709903 1.0000 100 chrXV:967979-968933 1.0000 100 chrXIII:837759-838227 1.0000 100 chrXV:988245-989603 1.0000 100 chrXI:99261-105425 1.0000 100 chrXV:722878-724829 1.0000 100 chrXV:725101-725696 1.0000 100 chrXIII:159242-160219 1.0000 100 chrXVI:718260-719527 1.0000 100 chrX:115702-115802 1.0000 100 chrIV:915187-917087 1.0000 100 chrIV:411077-411676 1.0000 100 chrXV:514316-514769 1.0000 100 chrXI:93582-94123 1.0000 100 chrIX:316150-318300 1.0000 100 chrXV:519865-521198 1.0000 100 chrXII:241588-242004 1.0000 100 chrXIV:173793-174687 1.0000 100 chrII:197292-197841 1.0000 100 chrXII:234521-235090 1.0000 100 chrXII:262850-264529 1.0000 100 chrVII:397904-400145 1.0000 100 chrXIII:774056-774818 1.0000 100 chrV:60989-62152 1.0000 100 chrIV:1278605-1279373 1.0000 100 chrVII:411931-412561 1.0000 100 chrXII:737749-738174 1.0000 100 chrX:349747-349847 1.0000 100 chrXI:7724-8784 1.0000 100 chrXVI:302679-304341 1.0000 100 chrVII:988756-990816 1.0000 100 chrII:604091-607529 1.0000 100 chrVIII:555956-556449 1.0000 100 chrXV:758880-759585 1.0000 100 chrXIV:493377-495716 1.0000 100 chrIV:1401313-1403525 1.0000 100 chrVIII:205817-206739 1.0000 100 chrVIII:358278-358743 1.0000 100 chrVII:545096-545996 1.0000 100 chrVIII:119624-122611 1.0000 100 chrXIV:546530-547461 1.0000 100 chrVII:319245-320125 1.0000 100 chrII:476651-477810 1.0000 100 chrXVI:451707-454367 1.0000 100 chrII:59610-61254 1.0000 100 chrVII:738887-739699 1.0000 100 chrIX:257388-258169 1.0000 100 chrXVI:920843-921533 1.0000 100 chrIII:123331-123826 1.0000 100 chrXIV:763940-764500 1.0000 100 chrVII:576186-577438 1.0000 100 chrVI:220027-222021 1.0000 100 chrIX:98180-100024 1.0000 100 chrXIV:374684-375136 1.0000 100 chrXVI:810586-810952 1.0000 100 chrVII:544406-544858 1.0000 100 chrIV:600594-602403 1.0000 100 chrXIV:715510-716646 1.0000 100 chrVI:131223-131733 1.0000 100 chrXV:677924-679150 1.0000 100 chrII:408127-409178 1.0000 100 chrIV:433698-434864 1.0000 100 chrVIII:379340-380359 1.0000 100 chrXIII:886992-889285 1.0000 100 chrII:680276-682354 1.0000 100 chrXIII:498939-500878 1.0000 100 chrIII:177046-178823 1.0000 100 chrVII:661533-661951 1.0000 100 chrIX:338712-339203 1.0000 100 chrVII:848663-848925 1.0000 100 chrXI:333916-334956 1.0000 100 chrXV:252160-255085 1.0000 100 chrIV:992726-993250 1.0000 100 chrV:487093-487589 1.0000 100 chrX:73398-73498 1.0000 100 chrVI:263393-263771 1.0000 100 chrIII:295313-295860 1.0000 100 chrVIII:20874-21530 1.0000 100 chrXIV:576690-577649 1.0000 100 chrVI:180698-181263 1.0000 100 chrXIV:217211-217579 1.0000 100 chrV:335515-335951 1.0000 100 chrIX:267362-267570 1.0000 100 chrVII:479114-482963 1.0000 100 chrX:622140-622240 1.0000 100 chrXII:722669-723421 1.0000 100 chrXV:505678-507056 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SOK2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SOK2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SOK2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SOK2/background): A 0.306 C 0.194 G 0.194 T 0.306 ******************************************************************************** ******************************************************************************** MOTIF DSSSGGRATCGAACCCSSGACCTYMNGRTT MEME-1 width = 30 sites = 70 llr = 1342 E-value = 1.5e-256 ******************************************************************************** -------------------------------------------------------------------------------- Motif DSSSGGRATCGAACCCSSGACCTYMNGRTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 42:13:65:::aa::12:26::1133151: pos.-specific C :553:::2:7:::a6633:16625533212 probability G 43366a42::a::::3558:1311126322 matrix T 3:2::::2a3::::31:2:2325422::66 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * ****** * Entropy 1.2 * ****** * * (27.7 bits) 0.9 * ** ****** * * * 0.7 ***** ******** ** ** * 0.5 ******* *********** ** * * ** 0.2 ******* ***************** **** 0.0 ------------------------------ Multilevel GCCGGGAATCGAACCCGGGACCTCCAGATT consensus AGGCA GG T TGCCATTGCTACCG G sequence TAT A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSSSGGRATCGAACCCSSGACCTYMNGRTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIII:123331-123826 + 56 4.56e-14 TGTGGGGCGA GCCGGGACTCGAACCCGGGACCTCCCGCAC CCTAAGCGAG chrXIV:631615-632115 + 38 4.56e-14 ATGGGGGCGA GCCGGGACTCGAACCCGGGACCTCCCGCAC CCTAAGCGAG chrIV:1016957-1017493 + 39 4.22e-13 AAACTCCGAA GCGGGGAGTCGAACCCCGGTCTCCACGGTG AGAACGTGAT chrV:487093-487589 + 47 1.05e-12 ATACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrX:115702-115802 + 43 1.05e-12 ATACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrVII:401435-401613 + 60 1.05e-12 ATACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrIX:370231-370734 - 20 1.05e-12 ATACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrXVI:209961-210475 + 31 1.05e-12 AAACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrIII:168144-168546 + 13 8.71e-12 AAAAGGTCCT ACCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrII:350599-351147 - 39 8.71e-12 ATAAGGTCTT ACCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrVI:180698-181263 + 51 1.01e-11 GACTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXV:226430-226897 + 5 1.01e-11 GCAA GCCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXV:663596-664096 + 23 1.36e-11 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:586366-586911 + 55 1.36e-11 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrX:378214-378314 - 43 1.36e-11 AATTGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrVII:823347-823729 - 31 1.36e-11 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrV:438477-438965 - 66 1.36e-11 ATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXI:307877-308464 + 31 1.36e-11 AATTGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrV:130815-131360 + 52 2.41e-11 AATAGGTCTT ACCCGGATTCGAACCGGGGTTGTTCGGATC AAAACCGAAA chrIV:1075260-1075743 + 28 2.78e-11 AAATGTTCCA ACCGAGGATCGAACTCGGGACCTTTGCCGT GTGAAGGCAA chrII:197292-197841 - 15 5.46e-11 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXVI:880000-880573 + 67 5.46e-11 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTA chrXIV:569630-570079 + 70 5.46e-11 GAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT A chrXIII:572704-573133 + 22 1.18e-10 ATGTGCTCCA GGGGAGGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrXIII:808023-808536 + 24 1.18e-10 GGAAGGTCCC ACCCGGATTCGAACTGGGGTTGTTCGGATC AGAACCGAAA chrX:390792-390892 + 43 1.18e-10 ATATGCTCCA GGGGAGGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrIV:1256826-1257294 + 5 1.50e-10 GGAA GCCGGGAATCGAACCCGGGCCCCATGCTTG GGAAGCATGA chrVII:122070-122615 - 13 1.70e-10 AATAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrV:435550-436004 + 32 1.70e-10 GAAAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIII:151115-151516 + 26 1.70e-10 GAAAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIX:300018-300475 + 39 1.70e-10 GATAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrXIII:837759-838227 - 37 4.79e-10 ATATCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrIV:946153-946635 - 20 4.79e-10 AAATCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrVI:167238-167711 - 65 4.79e-10 CTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrXIV:374684-375136 - 63 5.96e-10 TTGCGAAC TCTGTGGATCGAACACAGGACCTCCAGATG ACTTGACCGA chrVII:779398-779967 - 19 5.96e-10 TCTTGAGCGG TACGAGAATCGAACCCGTGTCCCCACCTTG GAAGGGTGGG chrXIII:195932-196302 + 8 5.96e-10 GGGGCGA GCTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrXIII:131635-132063 + 33 7.38e-10 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXV:594075-594635 + 56 8.20e-10 AGATGCGCAA GCCGGGAATCGAACCCGGGCCTCATGCTTG GGAAGCATAA chrXII:374197-374662 - 12 1.24e-09 AATCTTCCCC GCCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrVII:287137-287643 + 17 2.03e-09 AAATGAAACG GACAGGAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrX:415710-415810 + 25 2.03e-09 AATTGAAACG GACAGGAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrXI:302715-303242 - 59 2.03e-09 AAATGAAACG GACAGGAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrIV:433698-434864 + 40 2.97e-09 ATATGCTTCC AATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrXIV:104599-105102 - 41 2.97e-09 ATATGCTTCC AATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrXI:219724-220105 - 67 4.27e-09 ACGA GTCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrXIII:320958-321313 + 69 4.27e-09 AAATGGACGA GTCCGGAATCGAACCGGAGACCTCTCCCAT GC chrVIII:358278-358743 + 25 4.67e-09 ATATGCGAAT TCTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrXII:975792-976184 + 52 4.67e-09 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrVII:730967-731406 - 38 4.67e-09 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXV:228127-228585 - 62 4.67e-09 AACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXI:74408-74877 - 69 4.67e-09 CC AGTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrIV:1095140-1095631 + 42 4.67e-09 AAATGCGAAC TCTGTGGATCGAACACAGGACCTCCAGATA TCTTGACCAA chrVII:544406-544858 + 2 5.10e-09 G ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrII:405682-406372 - 18 5.10e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXI:513127-513591 + 30 5.10e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrIV:568703-569366 - 15 5.10e-09 ATTCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrX:355196-355296 - 68 5.10e-09 GCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrII:642833-643256 + 20 7.20e-09 AGAAGCTCGC ACTCAGGATCGAACTAAGGACCAACAGATT TGCAATCTGC chrXVI:435622-436166 + 56 7.20e-09 GAAAGCTCGC ACTCAGGATCGAACTAAGGACCAACAGATT TGCAATCTGC chrXII:875195-875703 - 36 1.09e-08 GAACTCCTCA TAGGGGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrII:9458-9871 - 16 1.38e-08 TACTGAAGGA TGCGAGGTTCGAACTCGCGCGGACAACCGT CCAACAGATC chrX:424256-424356 + 2 1.38e-08 A TGCGAGGTTCGAACTCGCGCGGACAACCGT CCAACAGATC chrXIV:725933-726375 + 37 1.38e-08 TACTGAAGGA TGCGAGGTTCGAACTCGCGCGGACAACCGT CCAACAGATC chrXVI:744067-744619 - 26 3.35e-08 TTTTGCCACC TGTCAGAATTGAACTAACGACCTTTGCATT ACAAGTGCAA chrIV:1305441-1305899 - 56 5.03e-08 TAACGACAAC TGCAGGACTCGAACCTGCGCGGGCCAAAGC CCAAAAGATT chrXII:167769-168232 + 1 9.40e-08 . TGCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrIV:437561-438123 - 25 9.40e-08 TGACGACAAC TGCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrXVI:689346-689873 - 51 2.38e-07 ATACGACACC AGCAGGATTTGAACCAGCGCGGGCAGAGCC CAACAGATTT chrV:288161-288755 + 42 2.38e-07 AAACGACACC AGCAGGATTTGAACCAGCGCGGGCAGAGCC CAACAGATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSSSGGRATCGAACCCSSGACCTYMNGRTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123331-123826 4.6e-14 55_[+1]_15 chrXIV:631615-632115 4.6e-14 37_[+1]_33 chrIV:1016957-1017493 4.2e-13 38_[+1]_32 chrV:487093-487589 1e-12 46_[+1]_24 chrX:115702-115802 1e-12 42_[+1]_28 chrVII:401435-401613 1e-12 59_[+1]_11 chrIX:370231-370734 1e-12 19_[-1]_51 chrXVI:209961-210475 1e-12 30_[+1]_40 chrIII:168144-168546 8.7e-12 12_[+1]_58 chrII:350599-351147 8.7e-12 38_[-1]_32 chrVI:180698-181263 1e-11 50_[+1]_20 chrXV:226430-226897 1e-11 4_[+1]_66 chrXV:663596-664096 1.4e-11 22_[+1]_48 chrXIII:586366-586911 1.4e-11 54_[+1]_16 chrX:378214-378314 1.4e-11 42_[-1]_28 chrVII:823347-823729 1.4e-11 30_[-1]_40 chrV:438477-438965 1.4e-11 65_[-1]_5 chrXI:307877-308464 1.4e-11 30_[+1]_40 chrV:130815-131360 2.4e-11 51_[+1]_19 chrIV:1075260-1075743 2.8e-11 27_[+1]_43 chrII:197292-197841 5.5e-11 14_[-1]_56 chrXVI:880000-880573 5.5e-11 66_[+1]_4 chrXIV:569630-570079 5.5e-11 69_[+1]_1 chrXIII:572704-573133 1.2e-10 21_[+1]_49 chrXIII:808023-808536 1.2e-10 23_[+1]_47 chrX:390792-390892 1.2e-10 42_[+1]_28 chrIV:1256826-1257294 1.5e-10 4_[+1]_66 chrVII:122070-122615 1.7e-10 12_[-1]_58 chrV:435550-436004 1.7e-10 31_[+1]_39 chrIII:151115-151516 1.7e-10 25_[+1]_45 chrIX:300018-300475 1.7e-10 38_[+1]_32 chrXIII:837759-838227 4.8e-10 36_[-1]_34 chrIV:946153-946635 4.8e-10 19_[-1]_51 chrVI:167238-167711 4.8e-10 64_[-1]_6 chrXIV:374684-375136 6e-10 62_[-1]_8 chrVII:779398-779967 6e-10 18_[-1]_52 chrXIII:195932-196302 6e-10 7_[+1]_63 chrXIII:131635-132063 7.4e-10 32_[+1]_38 chrXV:594075-594635 8.2e-10 55_[+1]_15 chrXII:374197-374662 1.2e-09 11_[-1]_59 chrVII:287137-287643 2e-09 16_[+1]_54 chrX:415710-415810 2e-09 24_[+1]_46 chrXI:302715-303242 2e-09 58_[-1]_12 chrIV:433698-434864 3e-09 39_[+1]_31 chrXIV:104599-105102 3e-09 40_[-1]_30 chrXI:219724-220105 4.3e-09 66_[-1]_4 chrXIII:320958-321313 4.3e-09 68_[+1]_2 chrVIII:358278-358743 4.7e-09 24_[+1]_46 chrXII:975792-976184 4.7e-09 51_[+1]_19 chrVII:730967-731406 4.7e-09 37_[-1]_33 chrXV:228127-228585 4.7e-09 61_[-1]_9 chrXI:74408-74877 4.7e-09 68_[-1]_2 chrIV:1095140-1095631 4.7e-09 41_[+1]_29 chrVII:544406-544858 5.1e-09 1_[+1]_69 chrII:405682-406372 5.1e-09 17_[-1]_53 chrXI:513127-513591 5.1e-09 29_[+1]_41 chrIV:568703-569366 5.1e-09 14_[-1]_56 chrX:355196-355296 5.1e-09 67_[-1]_3 chrII:642833-643256 7.2e-09 19_[+1]_51 chrXVI:435622-436166 7.2e-09 55_[+1]_15 chrXII:875195-875703 1.1e-08 35_[-1]_35 chrII:9458-9871 1.4e-08 15_[-1]_55 chrX:424256-424356 1.4e-08 1_[+1]_69 chrXIV:725933-726375 1.4e-08 36_[+1]_34 chrXVI:744067-744619 3.3e-08 25_[-1]_45 chrIV:1305441-1305899 5e-08 55_[-1]_15 chrXII:167769-168232 9.4e-08 [+1]_70 chrIV:437561-438123 9.4e-08 24_[-1]_46 chrXVI:689346-689873 2.4e-07 50_[-1]_20 chrV:288161-288755 2.4e-07 41_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSSSGGRATCGAACCCSSGACCTYMNGRTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DSSSGGRATCGAACCCSSGACCTYMNGRTT width=30 seqs=70 chrIII:123331-123826 ( 56) GCCGGGACTCGAACCCGGGACCTCCCGCAC 1 chrXIV:631615-632115 ( 38) GCCGGGACTCGAACCCGGGACCTCCCGCAC 1 chrIV:1016957-1017493 ( 39) GCGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrV:487093-487589 ( 47) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrX:115702-115802 ( 43) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrVII:401435-401613 ( 60) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrIX:370231-370734 ( 20) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrXVI:209961-210475 ( 31) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrIII:168144-168546 ( 13) ACCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrII:350599-351147 ( 39) ACCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrVI:180698-181263 ( 51) GCCCGGAATCGAACCGGGGGCCCAACGATG 1 chrXV:226430-226897 ( 5) GCCCGGAATCGAACCGGGGGCCCAACGATG 1 chrXV:663596-664096 ( 23) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:586366-586911 ( 55) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrX:378214-378314 ( 43) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrVII:823347-823729 ( 31) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrV:438477-438965 ( 66) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXI:307877-308464 ( 31) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrV:130815-131360 ( 52) ACCCGGATTCGAACCGGGGTTGTTCGGATC 1 chrIV:1075260-1075743 ( 28) ACCGAGGATCGAACTCGGGACCTTTGCCGT 1 chrII:197292-197841 ( 15) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXVI:880000-880573 ( 67) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXIV:569630-570079 ( 70) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXIII:572704-573133 ( 22) GGGGAGGTTCGAACTCTCGACCTTCAGATT 1 chrXIII:808023-808536 ( 24) ACCCGGATTCGAACTGGGGTTGTTCGGATC 1 chrX:390792-390892 ( 43) GGGGAGGTTCGAACTCTCGACCTTCAGATT 1 chrIV:1256826-1257294 ( 5) GCCGGGAATCGAACCCGGGCCCCATGCTTG 1 chrVII:122070-122615 ( 13) TAGGGGGCTCGAACCCCTAACCTTATGATT 1 chrV:435550-436004 ( 32) TAGGGGGCTCGAACCCCTAACCTTATGATT 1 chrIII:151115-151516 ( 26) TAGGGGGCTCGAACCCCTAACCTTATGATT 1 chrIX:300018-300475 ( 39) TAGGGGGCTCGAACCCCTAACCTTATGATT 1 chrXIII:837759-838227 ( 37) GGGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrIV:946153-946635 ( 20) GGGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrVI:167238-167711 ( 65) GGGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrXIV:374684-375136 ( 63) TCTGTGGATCGAACACAGGACCTCCAGATG 1 chrVII:779398-779967 ( 19) TACGAGAATCGAACCCGTGTCCCCACCTTG 1 chrXIII:195932-196302 ( 8) GCTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrXIII:131635-132063 ( 33) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrXV:594075-594635 ( 56) GCCGGGAATCGAACCCGGGCCTCATGCTTG 1 chrXII:374197-374662 ( 12) GCCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrVII:287137-287643 ( 17) GACAGGAATTGAACCTGCAACCCTTCGATT 1 chrX:415710-415810 ( 25) GACAGGAATTGAACCTGCAACCCTTCGATT 1 chrXI:302715-303242 ( 59) GACAGGAATTGAACCTGCAACCCTTCGATT 1 chrIV:433698-434864 ( 40) AATCGGATTTGAACCGATGATCTCCACATT 1 chrXIV:104599-105102 ( 41) AATCGGATTTGAACCGATGATCTCCACATT 1 chrXI:219724-220105 ( 67) GTCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrXIII:320958-321313 ( 69) GTCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrVIII:358278-358743 ( 25) TCTGTGGATCGAACACAGGACCTCCAGATA 1 chrXII:975792-976184 ( 52) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrVII:730967-731406 ( 38) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXV:228127-228585 ( 62) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXI:74408-74877 ( 69) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrIV:1095140-1095631 ( 42) TCTGTGGATCGAACACAGGACCTCCAGATA 1 chrVII:544406-544858 ( 2) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrII:405682-406372 ( 18) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrXI:513127-513591 ( 30) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrIV:568703-569366 ( 15) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrX:355196-355296 ( 68) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrII:642833-643256 ( 20) ACTCAGGATCGAACTAAGGACCAACAGATT 1 chrXVI:435622-436166 ( 56) ACTCAGGATCGAACTAAGGACCAACAGATT 1 chrXII:875195-875703 ( 36) TAGGGGGCTCGAACCCCTGACATTTCGGTA 1 chrII:9458-9871 ( 16) TGCGAGGTTCGAACTCGCGCGGACAACCGT 1 chrX:424256-424356 ( 2) TGCGAGGTTCGAACTCGCGCGGACAACCGT 1 chrXIV:725933-726375 ( 37) TGCGAGGTTCGAACTCGCGCGGACAACCGT 1 chrXVI:744067-744619 ( 26) TGTCAGAATTGAACTAACGACCTTTGCATT 1 chrIV:1305441-1305899 ( 56) TGCAGGACTCGAACCTGCGCGGGCCAAAGC 1 chrXII:167769-168232 ( 1) TGCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrIV:437561-438123 ( 25) TGCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrXVI:689346-689873 ( 51) AGCAGGATTTGAACCAGCGCGGGCAGAGCC 1 chrV:288161-288755 ( 42) AGCAGGATTTGAACCAGCGCGGGCAGAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSSSGGRATCGAACCCSSGACCTYMNGRTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.0698 E= 1.5e-256 22 -1277 93 -17 -51 136 40 -342 -1277 123 82 -61 -125 69 152 -1277 -10 -218 169 -283 -1277 -1277 236 -1277 90 -1277 114 -1277 58 -31 4 -72 -1277 -1277 -1277 171 -1277 191 -1277 -17 -1277 -1277 236 -1277 171 -1277 -1277 -1277 171 -1277 -1277 -1277 -1277 236 -1277 -1277 -283 169 -218 -10 -210 152 48 -161 -61 69 123 -342 -342 63 136 -83 -61 -1277 204 -1277 94 -44 -218 -42 -1277 169 -77 -25 -441 152 40 -83 -210 32 -44 83 -183 128 -144 28 10 123 -177 -96 10 69 -7 -83 -210 56 173 -1277 58 14 56 -283 -210 -60 -31 107 -283 -31 32 87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSSSGGRATCGAACCCSSGACCTYMNGRTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 70 E= 1.5e-256 0.357143 0.000000 0.371429 0.271429 0.214286 0.500000 0.257143 0.028571 0.000000 0.457143 0.342857 0.200000 0.128571 0.314286 0.557143 0.000000 0.285714 0.042857 0.628571 0.042857 0.000000 0.000000 1.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.457143 0.157143 0.200000 0.185714 0.000000 0.000000 0.000000 1.000000 0.000000 0.728571 0.000000 0.271429 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.042857 0.628571 0.042857 0.285714 0.071429 0.557143 0.271429 0.100000 0.200000 0.314286 0.457143 0.028571 0.028571 0.300000 0.500000 0.171429 0.200000 0.000000 0.800000 0.000000 0.585714 0.142857 0.042857 0.228571 0.000000 0.628571 0.114286 0.257143 0.014286 0.557143 0.257143 0.171429 0.071429 0.242857 0.142857 0.542857 0.085714 0.471429 0.071429 0.371429 0.328571 0.457143 0.057143 0.157143 0.328571 0.314286 0.185714 0.171429 0.071429 0.285714 0.642857 0.000000 0.457143 0.214286 0.285714 0.042857 0.071429 0.128571 0.157143 0.642857 0.042857 0.157143 0.242857 0.557143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSSSGGRATCGAACCCSSGACCTYMNGRTT MEME-1 regular expression -------------------------------------------------------------------------------- [GAT][CGA][CGT][GC][GA]G[AG][AG]T[CT]GAAC[CT][CG][GCA][GC][GA][AT][CT][CG][TC][CT][CA][AC][GC][AGC]T[TG] -------------------------------------------------------------------------------- Time 354.92 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCCNAGTBGGTWRWGSSNYMSRCTTDW MEME-2 width = 29 sites = 31 llr = 625 E-value = 1.1e-089 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCNAGTBGGTWRWGSSNYMSRCTTDW MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:::2a1:::::664:::423142:245 pos.-specific C :::863:::4::1::2:5433531622:1 probability G :8a:22:9:2a81:42a5621145::14: matrix T a::223::a4:284:2:::2512118534 bits 2.4 * * * 2.1 * * * 1.9 * * * * 1.7 * * * * Relative 1.4 **** *** ** *** Entropy 1.2 **** *** ** *** * (29.1 bits) 0.9 ***** *** ** * *** * 0.7 ***** *** ***** *** ** 0.5 ***** ********* *** * *** ** 0.2 ***** ********* *** ********* 0.0 ----------------------------- Multilevel TGGCCCAGTCGGTAAAGCGATCGGCTTGA consensus TT T T TGT GCCCACA CAAT sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCNAGTBGGTWRWGSSNYMSRCTTDW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:689346-689873 + 13 2.28e-12 TTGGGCACTA TGGCCGAGTGGTTAAGGCGACAGACTTGA AATCTGTTGG chrIV:433698-434864 - 70 3.11e-12 TA TGGCCAAGTTGGTAAGGCGCCACACTAGT AATGTGGAGA chrXIV:560391-561113 - 28 3.11e-12 CGGGCTTCTA TGGCCAAGTTGGTAAGGCGCCACACTAGT AATGTGGAGA chrXIV:104599-105102 + 12 3.11e-12 TCAGCTTCTA TGGCCAAGTTGGTAAGGCGCCACACTAGT AATGTGGAGA chrVII:115326-115723 + 21 1.13e-11 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTTCGGCTTTT AAGCGCATTT chrIV:359368-359793 + 54 1.13e-11 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTTCGGCTTTT AAGCGCATTT chrXV:663596-664096 - 54 1.48e-11 AGTGGTTTCG TGGTCTAGTCGGTTATGGCATCTGCTTAA CACGCAGAAC chrV:469278-469660 + 45 1.48e-11 ATTGGTTTCG TGGTCTAGTCGGTTATGGCATCTGCTTAA CACGCAGAAC chrX:378214-378314 + 13 1.48e-11 ATAGGTTTCG TGGTCTAGTCGGTTATGGCATCTGCTTAA CACGCAGAAC chrVII:823347-823729 + 1 1.48e-11 . TGGTCTAGTCGGTTATGGCATCTGCTTAA CACGCAGAAC chrV:438477-438965 + 36 1.48e-11 TTAGGTTTCG TGGTCTAGTCGGTTATGGCATCTGCTTAA CACGCAGAAC chrXI:307877-308464 - 62 1.48e-11 AGTGGTTTCG TGGTCTAGTCGGTTATGGCATCTGCTTAA CACGCAGAAC chrVII:730967-731406 + 8 8.09e-11 GACTCCA TGGCCAAGTTGGTTAAGGCGTGCGACTGT TAATCGCAAG chrXV:228127-228585 + 32 8.09e-11 TTAGACTCCA TGGCCAAGTTGGTTAAGGCGTGCGACTGT TAATCGCAAG chrXI:74408-74877 + 39 8.09e-11 TTAGACTCCA TGGCCAAGTTGGTTAAGGCGTGCGACTGT TAATCGCAAG chrIX:183303-183726 - 14 2.11e-10 CCTGGTCTCT TGGCCCAGTTGGTTAAGGCACCGTGCTAA TAACGCGGGG chrX:617713-617813 + 42 2.33e-10 AATGGGAGTT TGGCCGAGTGGTTTAAGGCGTCAGATTTA GGTGGATTTA chrXII:167769-168232 - 40 3.14e-10 TATGGCAACT TGGCCGAGTGGTTAAGGCGAAAGATTAGA AATCTTTTGG chrIV:1305441-1305899 + 17 3.14e-10 TAAGGCAACT TGGCCGAGTGGTTAAGGCGAAAGATTAGA AATCTTTTGG chrXIV:374684-375136 + 16 4.18e-10 TAAGCGGACT TAGCTCAGTTGGGAGAGCGCCAGACTGAA GAAAAACTTC chrXVI:560028-560488 - 46 4.18e-10 TGAGCGGATT TAGCTCAGTTGGGAGAGCGCCAGACTGAA GAAAAAACTT chrVIII:237701-238137 - 35 4.18e-10 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCCAGACTGAA GAAAAAACTT chrXII:656822-657204 - 8 5.51e-10 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCTCCCTTAGC ATGGGAG chrXI:219724-220105 + 38 5.51e-10 ATAGGGCGTG TGGCGTAGTCGGTAGCGCGCTCCCTTAGC ATGGGAGAGG chrV:435550-436004 - 62 3.07e-09 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTATGACTCTT AATCATAAGG chrIII:151115-151516 - 56 3.07e-09 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTATGACTCTT AATCATAAGG chrIX:300018-300475 - 69 3.07e-09 TGT TGGCGCAATCGGTAGCGCGTATGACTCTT AATCATAAGG chrX:424256-424356 - 43 8.47e-09 GATGGAGGGT TGGCCGAGTGGTCTAAGGCGGCAGACTTA AGATCTGTTG chrXI:83999-84441 + 45 8.47e-09 TATGGAGGGT TGGCCGAGTGGTCTAAGGCGGCAGACTTA AGATCTGTTG chrXIII:572704-573133 - 52 3.89e-08 ATAGCTTCAG TAGCTCAGTAGGAAGAGCGTCAGTCTCAT AATCTGAAGG chrVI:106499-106823 - 28 5.84e-08 TTTCCATTTT CGGCTGGGCCGTTAGTGGGATCCGCCCGC TCCCGGAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCNAGTBGGTWRWGSSNYMSRCTTDW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:689346-689873 2.3e-12 12_[+2]_59 chrIV:433698-434864 3.1e-12 69_[-2]_2 chrXIV:560391-561113 3.1e-12 27_[-2]_44 chrXIV:104599-105102 3.1e-12 11_[+2]_60 chrVII:115326-115723 1.1e-11 20_[+2]_51 chrIV:359368-359793 1.1e-11 53_[+2]_18 chrXV:663596-664096 1.5e-11 53_[-2]_18 chrV:469278-469660 1.5e-11 44_[+2]_27 chrX:378214-378314 1.5e-11 12_[+2]_59 chrVII:823347-823729 1.5e-11 [+2]_71 chrV:438477-438965 1.5e-11 35_[+2]_36 chrXI:307877-308464 1.5e-11 61_[-2]_10 chrVII:730967-731406 8.1e-11 7_[+2]_64 chrXV:228127-228585 8.1e-11 31_[+2]_40 chrXI:74408-74877 8.1e-11 38_[+2]_33 chrIX:183303-183726 2.1e-10 13_[-2]_58 chrX:617713-617813 2.3e-10 41_[+2]_30 chrXII:167769-168232 3.1e-10 39_[-2]_32 chrIV:1305441-1305899 3.1e-10 16_[+2]_55 chrXIV:374684-375136 4.2e-10 15_[+2]_56 chrXVI:560028-560488 4.2e-10 45_[-2]_26 chrVIII:237701-238137 4.2e-10 34_[-2]_37 chrXII:656822-657204 5.5e-10 7_[-2]_64 chrXI:219724-220105 5.5e-10 37_[+2]_34 chrV:435550-436004 3.1e-09 61_[-2]_10 chrIII:151115-151516 3.1e-09 55_[-2]_16 chrIX:300018-300475 3.1e-09 68_[-2]_3 chrX:424256-424356 8.5e-09 42_[-2]_29 chrXI:83999-84441 8.5e-09 44_[+2]_27 chrXIII:572704-573133 3.9e-08 51_[-2]_20 chrVI:106499-106823 5.8e-08 27_[-2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCNAGTBGGTWRWGSSNYMSRCTTDW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCNAGTBGGTWRWGSSNYMSRCTTDW width=29 seqs=31 chrXVI:689346-689873 ( 13) TGGCCGAGTGGTTAAGGCGACAGACTTGA 1 chrIV:433698-434864 ( 70) TGGCCAAGTTGGTAAGGCGCCACACTAGT 1 chrXIV:560391-561113 ( 28) TGGCCAAGTTGGTAAGGCGCCACACTAGT 1 chrXIV:104599-105102 ( 12) TGGCCAAGTTGGTAAGGCGCCACACTAGT 1 chrVII:115326-115723 ( 21) TAGCTCAGTTGGTAGAGCGTTCGGCTTTT 1 chrIV:359368-359793 ( 54) TAGCTCAGTTGGTAGAGCGTTCGGCTTTT 1 chrXV:663596-664096 ( 54) TGGTCTAGTCGGTTATGGCATCTGCTTAA 1 chrV:469278-469660 ( 45) TGGTCTAGTCGGTTATGGCATCTGCTTAA 1 chrX:378214-378314 ( 13) TGGTCTAGTCGGTTATGGCATCTGCTTAA 1 chrVII:823347-823729 ( 1) TGGTCTAGTCGGTTATGGCATCTGCTTAA 1 chrV:438477-438965 ( 36) TGGTCTAGTCGGTTATGGCATCTGCTTAA 1 chrXI:307877-308464 ( 62) TGGTCTAGTCGGTTATGGCATCTGCTTAA 1 chrVII:730967-731406 ( 8) TGGCCAAGTTGGTTAAGGCGTGCGACTGT 1 chrXV:228127-228585 ( 32) TGGCCAAGTTGGTTAAGGCGTGCGACTGT 1 chrXI:74408-74877 ( 39) TGGCCAAGTTGGTTAAGGCGTGCGACTGT 1 chrIX:183303-183726 ( 14) TGGCCCAGTTGGTTAAGGCACCGTGCTAA 1 chrX:617713-617813 ( 42) TGGCCGAGTGGTTTAAGGCGTCAGATTTA 1 chrXII:167769-168232 ( 40) TGGCCGAGTGGTTAAGGCGAAAGATTAGA 1 chrIV:1305441-1305899 ( 17) TGGCCGAGTGGTTAAGGCGAAAGATTAGA 1 chrXIV:374684-375136 ( 16) TAGCTCAGTTGGGAGAGCGCCAGACTGAA 1 chrXVI:560028-560488 ( 46) TAGCTCAGTTGGGAGAGCGCCAGACTGAA 1 chrVIII:237701-238137 ( 35) TAGCTCAGTTGGGAGAGCGCCAGACTGAA 1 chrXII:656822-657204 ( 8) TGGCGTAGTCGGTAGCGCGCTCCCTTAGC 1 chrXI:219724-220105 ( 38) TGGCGTAGTCGGTAGCGCGCTCCCTTAGC 1 chrV:435550-436004 ( 62) TGGCGCAATCGGTAGCGCGTATGACTCTT 1 chrIII:151115-151516 ( 56) TGGCGCAATCGGTAGCGCGTATGACTCTT 1 chrIX:300018-300475 ( 69) TGGCGCAATCGGTAGCGCGTATGACTCTT 1 chrX:424256-424356 ( 43) TGGCCGAGTGGTCTAAGGCGGCAGACTTA 1 chrXI:83999-84441 ( 45) TGGCCGAGTGGTCTAAGGCGGCAGACTTA 1 chrXIII:572704-573133 ( 52) TAGCTCAGTAGGAAGAGCGTCAGTCTCAT 1 chrVI:106499-106823 ( 28) CGGCTGGGCCGTTAGTGGGATCCGCCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCNAGTBGGTWRWGSSNYMSRCTTDW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.1502 E= 1.1e-089 -1160 -259 -1160 166 -66 -1160 205 -1160 -1160 -1160 236 -1160 -1160 205 -1160 -66 -1160 166 -27 -44 -66 73 22 -24 166 -1160 -259 -1160 -166 -1160 222 -1160 -1160 -259 -1160 166 -324 99 -1 34 -1160 -1160 236 -1160 -1160 -1160 199 -44 -324 -159 -101 140 93 -1160 -1160 46 100 -1160 99 -1160 46 -27 -1 -44 -1160 -1160 236 -1160 -1160 150 122 -1160 -1160 111 158 -1160 22 41 -1 -66 -92 58 -159 66 8 132 -101 -166 -166 58 111 -66 34 -159 132 -224 -66 173 -259 -124 -1160 22 -1160 134 -44 -27 -101 76 22 -1160 99 -24 76 -101 -1160 34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCNAGTBGGTWRWGSSNYMSRCTTDW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 31 E= 1.1e-089 0.000000 0.032258 0.000000 0.967742 0.193548 0.000000 0.806452 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.806452 0.000000 0.193548 0.000000 0.612903 0.161290 0.225806 0.193548 0.322581 0.225806 0.258065 0.967742 0.000000 0.032258 0.000000 0.096774 0.000000 0.903226 0.000000 0.000000 0.032258 0.000000 0.967742 0.032258 0.387097 0.193548 0.387097 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.774194 0.225806 0.032258 0.064516 0.096774 0.806452 0.580645 0.000000 0.000000 0.419355 0.612903 0.000000 0.387097 0.000000 0.419355 0.161290 0.193548 0.225806 0.000000 0.000000 1.000000 0.000000 0.000000 0.548387 0.451613 0.000000 0.000000 0.419355 0.580645 0.000000 0.354839 0.258065 0.193548 0.193548 0.161290 0.290323 0.064516 0.483871 0.322581 0.483871 0.096774 0.096774 0.096774 0.290323 0.419355 0.193548 0.387097 0.064516 0.483871 0.064516 0.193548 0.645161 0.032258 0.129032 0.000000 0.225806 0.000000 0.774194 0.225806 0.161290 0.096774 0.516129 0.354839 0.000000 0.387097 0.258065 0.516129 0.096774 0.000000 0.387097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCNAGTBGGTWRWGSSNYMSRCTTDW MEME-2 regular expression -------------------------------------------------------------------------------- TGGC[CT][CTG]AGT[CT]G[GT]T[AT][AG][AT]G[CG][GC][AC][TC][CA][GC][GA]C[TC][TA][GAT][AT] -------------------------------------------------------------------------------- Time 679.79 secs. ******************************************************************************** ******************************************************************************** MOTIF RAAAAAADAAA MEME-3 width = 11 sites = 127 llr = 1152 E-value = 6.0e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAAAAAADAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 568aaaa3a88 pos.-specific C :::::::1::: probability G 322::::3::2 matrix T 21:::::3:2: bits 2.4 2.1 1.9 1.7 **** * Relative 1.4 **** * Entropy 1.2 ***** * * (13.1 bits) 0.9 ***** *** 0.7 ***** *** 0.5 ******* *** 0.2 *********** 0.0 ----------- Multilevel AAAAAAAGAAA consensus GG A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAADAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chrVIII:205817-206739 + 29 8.85e-07 ATAGGCCAAA GAAAAAAGAAA TTTTGCATTT chrIV:541069-541991 + 84 8.85e-07 AGAAGAATAA GAAAAAAGAAA ATCAGC chrIII:151115-151516 + 9 8.85e-07 TTTTCCAA GAAAAAAGAAA GCCCTGTAGG chrIV:690067-691133 - 28 8.85e-07 TCGGGTTTAA GAAAAAAGAAA AAAAGTATTT chrXVI:627329-627750 - 72 2.28e-06 CTTAAAATGA AAAAAAAGAAA CTATACAACC chrXVI:435622-436166 + 39 2.28e-06 AATTCTTTGG AAAAAAAGAAA GCTCGCACTC chrII:44978-45330 + 18 2.84e-06 ATCAAAATTA GGAAAAAGAAA TGAAGAACGA chrII:159784-160030 + 6 2.84e-06 TCAAA GGAAAAAGAAA AAGTCTCACC chrXVI:901057-902015 + 90 5.12e-06 GAATGGTAAC GAAAAAAAAAA chrXVI:880000-880573 + 38 5.12e-06 GTCTCTTTCG AGAAAAAGAAA GAGAAAAGAA chrVIII:400917-401375 + 46 5.12e-06 AAGGGTTACA GAAAAAAAAAA GCAGGTCTGA chrXI:260232-260879 + 48 5.12e-06 AGGTAATAAT GAAAAAAAAAA TCGGACATCT chrXII:703743-704703 + 83 5.12e-06 AAAGGCGAAA AGAAAAAGAAA AAGTATG chrXIV:721164-723233 + 83 5.12e-06 ATACTCTATC GAAAAAAAAAA TCTCTCG chrII:36252-36850 - 7 5.12e-06 GCCTAGAAAT GAAAAAAAAAA GAATGC chrIII:177046-178823 - 86 8.72e-06 AATT AAAAAAAAAAA CTTTTGGATA chrII:415539-416007 - 42 8.72e-06 AAAGAAAAAA AAAAAAAAAAA GGAAAAACTT chrIV:1236417-1238740 - 62 8.72e-06 TCCTATAATA AAAAAAAAAAA GTTAGTCATA chrX:607907-608007 - 71 8.72e-06 TAGCCCTGCA AAAAAAAAAAA TAAGATGGAA chrXIV:10070-10417 + 22 8.72e-06 GAAAAAAATT AAAAAAAAAAA AAAAAATCAA chrXII:711502-712881 - 46 8.72e-06 GTGGCAATGA AAAAAAAAAAA CTAGAAAAAA chrVI:210299-210880 + 44 8.72e-06 GTGTATTAAT GAAAAAATAAA GCCAAAAAAA chrVIII:475297-475909 + 1 8.72e-06 . AAAAAAAAAAA TGATACAAAG chrIV:1095140-1095631 + 22 8.72e-06 GCGTCACTGG GAAAAAATAAA AATGCGAACT chrXVI:424895-425671 + 1 8.72e-06 . AAAAAAAAAAA ACTTTATCAG chrIV:884257-884956 - 17 8.72e-06 AAAAAAAAAA AAAAAAAAAAA GAACTGAAAA chrVII:986406-987850 - 28 8.72e-06 TGTGCTCGCC AAAAAAAAAAA CCCTGCTGCG chrXVI:819109-820303 - 9 8.72e-06 AGATGTAAAA AAAAAAAAAAA TAGAAAAT chrXV:571718-572136 - 18 8.72e-06 CATATGATTT GAAAAAATAAA AAAATGTTGC chrVII:411931-412561 + 84 1.09e-05 TTTTGATTAG AAAAAAATAAA ACTTGA chrXII:975792-976184 + 34 1.09e-05 ATTTAATGCA AAAAAAATAAA CGACCCCAGT chrIX:370231-370734 - 66 1.09e-05 AGCGGATATG AAAAAAATAAA ATAAACATAC chrXIII:539965-541068 - 2 1.09e-05 ATGACTCAAC AAAAAAATAAA A chrXIV:350899-353033 - 51 1.09e-05 ACTGAAAAAT AAAAAAATAAA CAGTCTGGTC chrXIII:320958-321313 + 48 1.09e-05 TTAGTTAGCC AAAAAAATAAA AAATGGACGA chrXV:347321-347895 - 16 1.09e-05 TTATGCCCAG AAAAAAATAAA CGTAACGTTG chrIV:1344663-1345954 + 62 1.09e-05 AAAAAACTGG AAAAAAATAAA AAGAAAAAAT chrV:550810-551581 - 74 1.09e-05 CGTTCTGCTT AAAAAAATAAA AAATGATGTC chrX:415710-415810 + 6 1.09e-05 AAAAT AAAAAAATAAA TTGAAACGGA chrII:326437-327096 + 60 1.09e-05 TAGCAAATTT AAAAAAATAAA GAGTTTGATC chrIV:550499-551558 + 58 1.18e-05 TGTGTCGGCC GGAAAAAAAAA GCACGCATCC chrXI:307877-308464 + 12 1.18e-05 GATATCTGAC GGAAAAAAAAA TTGATTTCGC chrVII:988756-990816 + 36 1.52e-05 CAACAAAAAA GGAAAAATAAA ACAATAATTT chrXIII:159242-160219 - 35 1.52e-05 GAAATGGAGA GAGAAAAGAAA AGAGTATGAA chrII:504510-504792 - 73 1.52e-05 TCATACCACG AGAAAAAAAAA TCACCTGACA chrX:26160-26260 - 27 1.52e-05 TGCCTAGACG GAGAAAAGAAA ACGGGGAAAT chrVI:30224-32424 + 11 1.52e-05 AACGTTTCGG AGAAAAAAAAA TAAGGTGTCA chrII:662090-662827 + 22 1.52e-05 CCGAAAGTAA GAGAAAAGAAA AAAAGACTAA chrIV:1080402-1081055 - 90 1.52e-05 . GAGAAAAGAAA CATGATTGAC chrIX:257388-258169 - 1 1.98e-05 GATTTTAACT AAGAAAAGAAA chrXIV:493377-495716 + 42 1.98e-05 TAATAAAAGG AGAAAAATAAA GTTAGTAAAT chrXIII:480366-480826 + 66 1.98e-05 TTGAATCTTC AAAAAAAGAAG CCCTGTAGGG chrIV:1016957-1017493 + 21 1.98e-05 TTCTAGAAAA TAAAAAAGAAA CTCCGAAGCG chrVI:191213-191763 + 62 1.98e-05 AGCAAAAATT TAAAAAAGAAA TGCGTCACAG chrII:642833-643256 + 4 1.98e-05 AAA AAAAAAAGAAG CTCGCACTCA chrXII:903364-903673 - 87 1.98e-05 TTG TAAAAAAGAAA TAATGGGTCC chrXV:710124-710508 - 26 1.98e-05 AAGGAAATTA AGAAAAATAAA GGATCAAAGG chrXIV:426546-427289 - 1 2.07e-05 AACTTGACCA GTAAAAAGAAA chrXII:187231-187603 + 50 2.07e-05 TTCCTGCAGG GTAAAAAGAAA AGTGAAGTCA chrXV:519865-521198 - 12 2.37e-05 AGCGAAAATT GAAAAAAGATA AATACTTCCG chrXVI:572183-572723 - 14 2.37e-05 ACATGTTAAA GGGAAAAGAAA GGGGAAATGG chrXIV:209768-210154 + 5 2.37e-05 CTTA ATAAAAAGAAA TGAGAGTGAC chrVIII:134146-134691 - 89 2.37e-05 C ATAAAAAGAAA ACTTATTGGA chrX:390792-390892 + 11 2.37e-05 AAAATAGAGG GAAAAAAGATA TACGTATAAA chrII:680276-682354 + 55 2.88e-05 CAGCGCCACC AGAAAAAGAAG ACGAGCGAAG chrXII:818507-820440 + 17 2.88e-05 TAATTCGATT AGAAAAAGAAG GTGCGTTATC chrVII:147990-149550 - 61 2.88e-05 CACTAACTAA AGAAAAAGAAG GAAGTCGCCC chrVIII:126488-127773 - 6 2.88e-05 AAAAAAAGGA AGGAAAAGAAA TAGTT chrXV:680269-680970 - 79 2.88e-05 CTTTATTTCA AGAAAAAGAAG AGAAGTTATT chrVII:483217-484053 - 20 3.65e-05 CGCTGACGGG GAAAAAACAAA ACAAGCTTCC chrXI:258083-260031 + 67 3.65e-05 TGTAACGTTC TAAAAAAAAAA CAACGAAAAA chrX:90078-90178 - 84 3.65e-05 TTCAGT TAAAAAAAAAA CAAGGCCATG chrXII:1028221-1028603 - 67 3.65e-05 TTTTGAAGGC AAGAAAAAAAA TTATGACCCA chrIV:1075260-1075743 + 10 3.65e-05 AGTAGTAGT GAAAAAACAAA TGTTCCAACC chrVII:545096-545996 + 7 4.29e-05 AAAGGG AAGAAAATAAA TAAAGTTGTG chrXIV:738827-740145 - 46 4.29e-05 GGTCTTGCAT AAAAAAACAAA AAACGTTCTT chrXIV:776562-777442 + 5 4.29e-05 CACT TAAAAAATAAA GTTCCCGGGG chrX:196970-197070 + 85 4.29e-05 AACAGCTACG TAAAAAATAAA AGGCA chrX:378214-378314 - 84 4.29e-05 TGAATT AAAAAAACAAA AAATTGATTT chrVIII:49962-51414 - 11 4.29e-05 CATTCGAAGG AAAAAAACAAA GTTCAGAATT chrVI:137179-137693 + 42 4.48e-05 ATTTCAGTAT GGAAAAAGATA TGATACAATA chrXII:875195-875703 - 81 5.18e-05 AGGAAGTTG ATAAAAAAAAA GTAAAGAACT chrVI:19296-20060 + 6 5.18e-05 TTTCC GGAAAAAAAAG CTTAAAGATA chrV:487093-487589 + 22 6.28e-05 GTAAGCGATT GAAAAAATATA ACGAATACTC chrII:197292-197841 + 89 6.28e-05 TATTTTTTAT ATAAAAATAAA A chrXIV:631615-632115 + 14 6.28e-05 AAAAAATTTG ATAAAAATAAA TCAATGGGGG chrVII:648728-649363 + 90 6.28e-05 AGATCTTCGG ATAAAAATAAA chrII:350599-351147 - 84 6.28e-05 ATTCAT GAAAAAATATA TAAAAATAAG chrXIV:725933-726375 + 18 6.28e-05 CCGACAAAAT AAAAAAAAATA CTGAAGGATG chrIII:107059-107858 + 76 6.28e-05 ATAAGTATAC ATAAAAATAAA TACGAATAGA chrX:290829-290929 + 42 6.28e-05 TCGCTCGTTT AGGAAAAAAAA TGCATAGTTG chrVII:736184-736782 - 40 7.14e-05 AATACCTCTT AGAAAAATAAG AAATATCTTC chrVI:226384-226916 + 10 7.14e-05 AGAGCCGAG AAAAAAATATA GGAAAATATA chrV:130815-131360 + 35 7.34e-05 GCTGAGCGGG GGAAAAAAATA GGTCTTACCC chrVII:422882-423500 - 66 7.34e-05 CATTTTAAAT GGAAAAAAATA ATGGTTGCTA chrV:435550-436004 + 15 8.02e-05 GCGCAAAAAG TTAAAAAGAAA GCCCTGTAGG chrXIII:650901-653049 - 30 8.02e-05 TTTTCCTAAG TTAAAAAGAAA ATATGATATC chrVIII:20874-21530 - 9 8.68e-05 TAGTGTCAAA GAGAAAAAAAG GCCAAGCA chrXII:1028846-1030351 + 30 8.68e-05 TTGACCAAGA AGGAAAAGAAG GAAGCTAACT chrXI:74408-74877 + 14 8.68e-05 TGTCTTCCAA AGAAAAATATA GCAATTAGAC chrXIV:442757-444777 - 2 8.68e-05 ACCCGTGAAT TGGAAAAGAAA T chrVIII:388628-388998 + 10 8.68e-05 TAATGTGCC AAAAAAAGATG TTGAATTATA chrXIV:715510-716646 - 43 9.22e-05 TAAAATCAAG GAAAAAACAAG TGAGATTGCA chrVII:413101-413848 + 77 9.22e-05 ATCGTTTGCC AAGAAAAAAAG CCAATCGGAG chrXII:925011-925409 - 37 9.22e-05 GTAATTGAAG TAGAAAAAAAA TCTAGCTTTC chrVII:700301-701260 - 79 9.22e-05 TTTTGGTACA TAGAAAAAAAA TGCTATCCTA chrX:172666-172766 - 34 9.99e-05 TTCTTGATTG TAGAAAATAAA AAACCTGTCG chrXVI:431775-432670 + 12 9.99e-05 CCGCGGACGT GTAAAAAGATA TGCATCCAGC chrXI:46382-46996 + 77 9.99e-05 AATTAAAAAA TAGAAAATAAA ATTTCAAATG chrIX:300018-300475 + 22 9.99e-05 ATTGAAAATG GTAAAAAGATA GCCCTGTAGG chrVII:401435-401613 + 28 1.04e-04 CGGAACTAAC GTGAAAAAAAA CTTTCAAAAA chrXIII:572704-573133 + 4 1.16e-04 TTT GAAAAAAAATG TGCTCCAGGG chrIV:1161448-1162099 - 89 1.16e-04 C GAAAAAAAATG TTTTTTAGGC chrXV:27879-28167 - 46 1.16e-04 GAGAACCCGC AGGAAAAGATA TCTTTTTGAG chrXI:93582-94123 - 16 1.33e-04 CGCGCAGCGA ATAAAAATAAG ATGGCGGAGG chrVIII:16137-18538 + 15 1.33e-04 TACAAACAAG GAAAAAATATG ATGAAAGAAA chrXV:1049067-1049380 - 78 1.33e-04 AGTGGCCCAT TGAAAAAAAAG CTGAAACATT chrI:181132-181515 + 84 1.33e-04 TACTCTGAAG ATAAAAACAAA CTCAAG chrXI:430590-433021 + 44 1.33e-04 ACTATTGAAC TGAAAAAAAAG TAATCTAAGG chrVII:371151-371519 + 56 1.33e-04 CAGAGCGAAC TAAAAAAAATA CCGGCACCCA chrXII:1051909-1052203 + 53 1.33e-04 TTACTTAAAG TAAAAAAAATA ATGGTCTCTA chrXV:505678-507056 - 1 1.44e-04 CTATAAAAGA AGGAAAACAAA chrVIII:379340-380359 - 54 1.44e-04 GAAACGGAAA TGAAAAATAAG GGGGAGGCGT chrVIII:358278-358743 + 9 1.44e-04 AAATCGTT AAAAAAATATG CGAATTCTGT chrXV:1053857-1054590 + 88 1.44e-04 CTCATTTGAT TAAAAAATATA AA chrXIII:837759-838227 - 74 1.46e-04 GTAATCAAAA GTAAAAAAATA TCTCCCGGGG chrXI:21316-21818 - 12 1.51e-04 CGTTCAAAGG GTGAAAAGAAG AAATCATTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAADAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:205817-206739 8.9e-07 28_[+3]_61 chrIV:541069-541991 8.9e-07 83_[+3]_6 chrIII:151115-151516 8.9e-07 8_[+3]_81 chrIV:690067-691133 8.9e-07 27_[-3]_62 chrXVI:627329-627750 2.3e-06 71_[-3]_18 chrXVI:435622-436166 2.3e-06 38_[+3]_51 chrII:44978-45330 2.8e-06 17_[+3]_72 chrII:159784-160030 2.8e-06 5_[+3]_84 chrXVI:901057-902015 5.1e-06 89_[+3] chrXVI:880000-880573 5.1e-06 37_[+3]_52 chrVIII:400917-401375 5.1e-06 45_[+3]_44 chrXI:260232-260879 5.1e-06 47_[+3]_42 chrXII:703743-704703 5.1e-06 82_[+3]_7 chrXIV:721164-723233 5.1e-06 82_[+3]_7 chrII:36252-36850 5.1e-06 6_[-3]_83 chrIII:177046-178823 8.7e-06 85_[-3]_4 chrII:415539-416007 8.7e-06 41_[-3]_48 chrIV:1236417-1238740 8.7e-06 61_[-3]_28 chrX:607907-608007 8.7e-06 70_[-3]_19 chrXIV:10070-10417 8.7e-06 21_[+3]_68 chrXII:711502-712881 8.7e-06 45_[-3]_44 chrVI:210299-210880 8.7e-06 43_[+3]_46 chrVIII:475297-475909 8.7e-06 [+3]_89 chrIV:1095140-1095631 8.7e-06 21_[+3]_68 chrXVI:424895-425671 8.7e-06 [+3]_89 chrIV:884257-884956 8.7e-06 16_[-3]_73 chrVII:986406-987850 8.7e-06 27_[-3]_62 chrXVI:819109-820303 8.7e-06 8_[-3]_81 chrXV:571718-572136 8.7e-06 17_[-3]_72 chrVII:411931-412561 1.1e-05 83_[+3]_6 chrXII:975792-976184 1.1e-05 33_[+3]_56 chrIX:370231-370734 1.1e-05 65_[-3]_24 chrXIII:539965-541068 1.1e-05 1_[-3]_88 chrXIV:350899-353033 1.1e-05 50_[-3]_39 chrXIII:320958-321313 1.1e-05 47_[+3]_42 chrXV:347321-347895 1.1e-05 15_[-3]_74 chrIV:1344663-1345954 1.1e-05 61_[+3]_28 chrV:550810-551581 1.1e-05 73_[-3]_16 chrX:415710-415810 1.1e-05 5_[+3]_84 chrII:326437-327096 1.1e-05 59_[+3]_30 chrIV:550499-551558 1.2e-05 57_[+3]_32 chrXI:307877-308464 1.2e-05 11_[+3]_78 chrVII:988756-990816 1.5e-05 35_[+3]_54 chrXIII:159242-160219 1.5e-05 34_[-3]_55 chrII:504510-504792 1.5e-05 72_[-3]_17 chrX:26160-26260 1.5e-05 26_[-3]_63 chrVI:30224-32424 1.5e-05 10_[+3]_79 chrII:662090-662827 1.5e-05 21_[+3]_68 chrIV:1080402-1081055 1.5e-05 89_[-3] chrIX:257388-258169 2e-05 [-3]_89 chrXIV:493377-495716 2e-05 41_[+3]_48 chrXIII:480366-480826 2e-05 65_[+3]_24 chrIV:1016957-1017493 2e-05 20_[+3]_69 chrVI:191213-191763 2e-05 61_[+3]_28 chrII:642833-643256 2e-05 3_[+3]_86 chrXII:903364-903673 2e-05 86_[-3]_3 chrXV:710124-710508 2e-05 25_[-3]_64 chrXIV:426546-427289 2.1e-05 [-3]_89 chrXII:187231-187603 2.1e-05 49_[+3]_40 chrXV:519865-521198 2.4e-05 11_[-3]_78 chrXVI:572183-572723 2.4e-05 13_[-3]_76 chrXIV:209768-210154 2.4e-05 4_[+3]_85 chrVIII:134146-134691 2.4e-05 88_[-3]_1 chrX:390792-390892 2.4e-05 10_[+3]_79 chrII:680276-682354 2.9e-05 54_[+3]_35 chrXII:818507-820440 2.9e-05 16_[+3]_73 chrVII:147990-149550 2.9e-05 60_[-3]_29 chrVIII:126488-127773 2.9e-05 5_[-3]_84 chrXV:680269-680970 2.9e-05 78_[-3]_11 chrVII:483217-484053 3.6e-05 19_[-3]_70 chrXI:258083-260031 3.6e-05 66_[+3]_23 chrX:90078-90178 3.6e-05 83_[-3]_6 chrXII:1028221-1028603 3.6e-05 66_[-3]_23 chrIV:1075260-1075743 3.6e-05 9_[+3]_80 chrVII:545096-545996 4.3e-05 6_[+3]_83 chrXIV:738827-740145 4.3e-05 45_[-3]_44 chrXIV:776562-777442 4.3e-05 4_[+3]_85 chrX:196970-197070 4.3e-05 84_[+3]_5 chrX:378214-378314 4.3e-05 83_[-3]_6 chrVIII:49962-51414 4.3e-05 10_[-3]_79 chrVI:137179-137693 4.5e-05 41_[+3]_48 chrXII:875195-875703 5.2e-05 80_[-3]_9 chrVI:19296-20060 5.2e-05 5_[+3]_84 chrV:487093-487589 6.3e-05 21_[+3]_68 chrII:197292-197841 6.3e-05 88_[+3]_1 chrXIV:631615-632115 6.3e-05 13_[+3]_76 chrVII:648728-649363 6.3e-05 89_[+3] chrII:350599-351147 6.3e-05 83_[-3]_6 chrXIV:725933-726375 6.3e-05 17_[+3]_72 chrIII:107059-107858 6.3e-05 75_[+3]_14 chrX:290829-290929 6.3e-05 41_[+3]_48 chrVII:736184-736782 7.1e-05 39_[-3]_50 chrVI:226384-226916 7.1e-05 9_[+3]_80 chrV:130815-131360 7.3e-05 34_[+3]_55 chrVII:422882-423500 7.3e-05 65_[-3]_24 chrV:435550-436004 8e-05 14_[+3]_75 chrXIII:650901-653049 8e-05 29_[-3]_60 chrVIII:20874-21530 8.7e-05 8_[-3]_81 chrXII:1028846-1030351 8.7e-05 29_[+3]_60 chrXI:74408-74877 8.7e-05 13_[+3]_76 chrXIV:442757-444777 8.7e-05 1_[-3]_88 chrVIII:388628-388998 8.7e-05 9_[+3]_80 chrXIV:715510-716646 9.2e-05 42_[-3]_47 chrVII:413101-413848 9.2e-05 76_[+3]_13 chrXII:925011-925409 9.2e-05 36_[-3]_53 chrVII:700301-701260 9.2e-05 78_[-3]_11 chrX:172666-172766 0.0001 33_[-3]_56 chrXVI:431775-432670 0.0001 11_[+3]_78 chrXI:46382-46996 0.0001 76_[+3]_13 chrIX:300018-300475 0.0001 21_[+3]_68 chrVII:401435-401613 0.0001 27_[+3]_62 chrXIII:572704-573133 0.00012 3_[+3]_86 chrIV:1161448-1162099 0.00012 88_[-3]_1 chrXV:27879-28167 0.00012 45_[-3]_44 chrXI:93582-94123 0.00013 15_[-3]_74 chrVIII:16137-18538 0.00013 14_[+3]_75 chrXV:1049067-1049380 0.00013 77_[-3]_12 chrI:181132-181515 0.00013 83_[+3]_6 chrXI:430590-433021 0.00013 43_[+3]_46 chrVII:371151-371519 0.00013 55_[+3]_34 chrXII:1051909-1052203 0.00013 52_[+3]_37 chrXV:505678-507056 0.00014 [-3]_89 chrVIII:379340-380359 0.00014 53_[-3]_36 chrVIII:358278-358743 0.00014 8_[+3]_81 chrXV:1053857-1054590 0.00014 87_[+3]_2 chrXIII:837759-838227 0.00015 73_[-3]_16 chrXI:21316-21818 0.00015 11_[-3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAADAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAAAAAADAAA width=11 seqs=127 chrVIII:205817-206739 ( 29) GAAAAAAGAAA 1 chrIV:541069-541991 ( 84) GAAAAAAGAAA 1 chrIII:151115-151516 ( 9) GAAAAAAGAAA 1 chrIV:690067-691133 ( 28) GAAAAAAGAAA 1 chrXVI:627329-627750 ( 72) AAAAAAAGAAA 1 chrXVI:435622-436166 ( 39) AAAAAAAGAAA 1 chrII:44978-45330 ( 18) GGAAAAAGAAA 1 chrII:159784-160030 ( 6) GGAAAAAGAAA 1 chrXVI:901057-902015 ( 90) GAAAAAAAAAA 1 chrXVI:880000-880573 ( 38) AGAAAAAGAAA 1 chrVIII:400917-401375 ( 46) GAAAAAAAAAA 1 chrXI:260232-260879 ( 48) GAAAAAAAAAA 1 chrXII:703743-704703 ( 83) AGAAAAAGAAA 1 chrXIV:721164-723233 ( 83) GAAAAAAAAAA 1 chrII:36252-36850 ( 7) GAAAAAAAAAA 1 chrIII:177046-178823 ( 86) AAAAAAAAAAA 1 chrII:415539-416007 ( 42) AAAAAAAAAAA 1 chrIV:1236417-1238740 ( 62) AAAAAAAAAAA 1 chrX:607907-608007 ( 71) AAAAAAAAAAA 1 chrXIV:10070-10417 ( 22) AAAAAAAAAAA 1 chrXII:711502-712881 ( 46) AAAAAAAAAAA 1 chrVI:210299-210880 ( 44) GAAAAAATAAA 1 chrVIII:475297-475909 ( 1) AAAAAAAAAAA 1 chrIV:1095140-1095631 ( 22) GAAAAAATAAA 1 chrXVI:424895-425671 ( 1) AAAAAAAAAAA 1 chrIV:884257-884956 ( 17) AAAAAAAAAAA 1 chrVII:986406-987850 ( 28) AAAAAAAAAAA 1 chrXVI:819109-820303 ( 9) AAAAAAAAAAA 1 chrXV:571718-572136 ( 18) GAAAAAATAAA 1 chrVII:411931-412561 ( 84) AAAAAAATAAA 1 chrXII:975792-976184 ( 34) AAAAAAATAAA 1 chrIX:370231-370734 ( 66) AAAAAAATAAA 1 chrXIII:539965-541068 ( 2) AAAAAAATAAA 1 chrXIV:350899-353033 ( 51) AAAAAAATAAA 1 chrXIII:320958-321313 ( 48) AAAAAAATAAA 1 chrXV:347321-347895 ( 16) AAAAAAATAAA 1 chrIV:1344663-1345954 ( 62) AAAAAAATAAA 1 chrV:550810-551581 ( 74) AAAAAAATAAA 1 chrX:415710-415810 ( 6) AAAAAAATAAA 1 chrII:326437-327096 ( 60) AAAAAAATAAA 1 chrIV:550499-551558 ( 58) GGAAAAAAAAA 1 chrXI:307877-308464 ( 12) GGAAAAAAAAA 1 chrVII:988756-990816 ( 36) GGAAAAATAAA 1 chrXIII:159242-160219 ( 35) GAGAAAAGAAA 1 chrII:504510-504792 ( 73) AGAAAAAAAAA 1 chrX:26160-26260 ( 27) GAGAAAAGAAA 1 chrVI:30224-32424 ( 11) AGAAAAAAAAA 1 chrII:662090-662827 ( 22) GAGAAAAGAAA 1 chrIV:1080402-1081055 ( 90) GAGAAAAGAAA 1 chrIX:257388-258169 ( 1) AAGAAAAGAAA 1 chrXIV:493377-495716 ( 42) AGAAAAATAAA 1 chrXIII:480366-480826 ( 66) AAAAAAAGAAG 1 chrIV:1016957-1017493 ( 21) TAAAAAAGAAA 1 chrVI:191213-191763 ( 62) TAAAAAAGAAA 1 chrII:642833-643256 ( 4) AAAAAAAGAAG 1 chrXII:903364-903673 ( 87) TAAAAAAGAAA 1 chrXV:710124-710508 ( 26) AGAAAAATAAA 1 chrXIV:426546-427289 ( 1) GTAAAAAGAAA 1 chrXII:187231-187603 ( 50) GTAAAAAGAAA 1 chrXV:519865-521198 ( 12) GAAAAAAGATA 1 chrXVI:572183-572723 ( 14) GGGAAAAGAAA 1 chrXIV:209768-210154 ( 5) ATAAAAAGAAA 1 chrVIII:134146-134691 ( 89) ATAAAAAGAAA 1 chrX:390792-390892 ( 11) GAAAAAAGATA 1 chrII:680276-682354 ( 55) AGAAAAAGAAG 1 chrXII:818507-820440 ( 17) AGAAAAAGAAG 1 chrVII:147990-149550 ( 61) AGAAAAAGAAG 1 chrVIII:126488-127773 ( 6) AGGAAAAGAAA 1 chrXV:680269-680970 ( 79) AGAAAAAGAAG 1 chrVII:483217-484053 ( 20) GAAAAAACAAA 1 chrXI:258083-260031 ( 67) TAAAAAAAAAA 1 chrX:90078-90178 ( 84) TAAAAAAAAAA 1 chrXII:1028221-1028603 ( 67) AAGAAAAAAAA 1 chrIV:1075260-1075743 ( 10) GAAAAAACAAA 1 chrVII:545096-545996 ( 7) AAGAAAATAAA 1 chrXIV:738827-740145 ( 46) AAAAAAACAAA 1 chrXIV:776562-777442 ( 5) TAAAAAATAAA 1 chrX:196970-197070 ( 85) TAAAAAATAAA 1 chrX:378214-378314 ( 84) AAAAAAACAAA 1 chrVIII:49962-51414 ( 11) AAAAAAACAAA 1 chrVI:137179-137693 ( 42) GGAAAAAGATA 1 chrXII:875195-875703 ( 81) ATAAAAAAAAA 1 chrVI:19296-20060 ( 6) GGAAAAAAAAG 1 chrV:487093-487589 ( 22) GAAAAAATATA 1 chrII:197292-197841 ( 89) ATAAAAATAAA 1 chrXIV:631615-632115 ( 14) ATAAAAATAAA 1 chrVII:648728-649363 ( 90) ATAAAAATAAA 1 chrII:350599-351147 ( 84) GAAAAAATATA 1 chrXIV:725933-726375 ( 18) AAAAAAAAATA 1 chrIII:107059-107858 ( 76) ATAAAAATAAA 1 chrX:290829-290929 ( 42) AGGAAAAAAAA 1 chrVII:736184-736782 ( 40) AGAAAAATAAG 1 chrVI:226384-226916 ( 10) AAAAAAATATA 1 chrV:130815-131360 ( 35) GGAAAAAAATA 1 chrVII:422882-423500 ( 66) GGAAAAAAATA 1 chrV:435550-436004 ( 15) TTAAAAAGAAA 1 chrXIII:650901-653049 ( 30) TTAAAAAGAAA 1 chrVIII:20874-21530 ( 9) GAGAAAAAAAG 1 chrXII:1028846-1030351 ( 30) AGGAAAAGAAG 1 chrXI:74408-74877 ( 14) AGAAAAATATA 1 chrXIV:442757-444777 ( 2) TGGAAAAGAAA 1 chrVIII:388628-388998 ( 10) AAAAAAAGATG 1 chrXIV:715510-716646 ( 43) GAAAAAACAAG 1 chrVII:413101-413848 ( 77) AAGAAAAAAAG 1 chrXII:925011-925409 ( 37) TAGAAAAAAAA 1 chrVII:700301-701260 ( 79) TAGAAAAAAAA 1 chrX:172666-172766 ( 34) TAGAAAATAAA 1 chrXVI:431775-432670 ( 12) GTAAAAAGATA 1 chrXI:46382-46996 ( 77) TAGAAAATAAA 1 chrIX:300018-300475 ( 22) GTAAAAAGATA 1 chrVII:401435-401613 ( 28) GTGAAAAAAAA 1 chrXIII:572704-573133 ( 4) GAAAAAAAATG 1 chrIV:1161448-1162099 ( 89) GAAAAAAAATG 1 chrXV:27879-28167 ( 46) AGGAAAAGATA 1 chrXI:93582-94123 ( 16) ATAAAAATAAG 1 chrVIII:16137-18538 ( 15) GAAAAAATATG 1 chrXV:1049067-1049380 ( 78) TGAAAAAAAAG 1 chrI:181132-181515 ( 84) ATAAAAACAAA 1 chrXI:430590-433021 ( 44) TGAAAAAAAAG 1 chrVII:371151-371519 ( 56) TAAAAAAAATA 1 chrXII:1051909-1052203 ( 53) TAAAAAAAATA 1 chrXV:505678-507056 ( 1) AGGAAAACAAA 1 chrVIII:379340-380359 ( 54) TGAAAAATAAG 1 chrVIII:358278-358743 ( 9) AAAAAAATATG 1 chrXV:1053857-1054590 ( 88) TAAAAAATATA 1 chrXIII:837759-838227 ( 74) GTAAAAAAATA 1 chrXI:21316-21818 ( 12) GTGAAAAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAADAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 10.4642 E= 6.0e-048 70 -1363 83 -96 101 -1363 33 -111 144 -1363 -17 -1363 171 -1363 -1363 -1363 171 -1363 -1363 -1363 171 -1363 -1363 -1363 171 -1363 -1363 -1363 8 -163 77 -11 171 -1363 -1363 -1363 144 -1363 -1363 -82 144 -1363 -17 -1363 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAADAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 127 E= 6.0e-048 0.496063 0.000000 0.346457 0.157480 0.614173 0.000000 0.244094 0.141732 0.826772 0.000000 0.173228 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.322835 0.062992 0.330709 0.283465 1.000000 0.000000 0.000000 0.000000 0.826772 0.000000 0.000000 0.173228 0.826772 0.000000 0.173228 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAADAAA MEME-3 regular expression -------------------------------------------------------------------------------- [AG][AG]AAAAA[GAT]AAA -------------------------------------------------------------------------------- Time 1002.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:301092-302063 1.12e-01 34_[+1(9.94e-05)]_36 chrVIII:237701-238137 7.43e-07 34_[-2(4.18e-10)]_37 chrXV:80314-81514 4.47e-01 100 chrVII:55585-56142 5.76e-01 100 chrXI:280590-280881 6.30e-02 57_[-1(9.19e-05)]_13 chrI:81921-82281 2.06e-01 100 chrIV:1354332-1355974 4.14e-01 100 chrXVI:828392-829491 7.73e-02 100 chrXIII:760676-760936 4.49e-02 61_[+1(4.86e-05)]_9 chrVII:426853-427630 5.98e-01 100 chrVII:364871-366774 9.02e-01 100 chrXI:357074-357286 4.62e-01 100 chrIV:591653-593078 9.81e-01 100 chrII:702134-702517 1.06e-01 100 chrXVI:435622-436166 6.67e-10 38_[+3(2.28e-06)]_6_[+1(7.20e-09)]_\ 15 chrIV:1075260-1075743 2.20e-10 9_[+3(3.65e-05)]_7_[+1(2.78e-11)]_\ 43 chrXI:578722-579590 8.05e-02 100 chrIX:322597-324379 8.67e-01 100 chrXIV:585394-586911 4.53e-01 100 chrIV:913939-914858 1.92e-01 100 chrXII:447775-448933 4.78e-01 100 chrIX:300018-300475 1.31e-13 21_[+3(9.99e-05)]_6_[+1(1.70e-10)]_\ [-2(3.07e-09)]_3 chrII:167595-169739 3.05e-01 100 chrXI:458013-458945 7.33e-01 100 chrXVI:74980-76732 6.61e-01 100 chrI:169383-170894 9.95e-01 100 chrXV:710124-710508 6.17e-02 25_[-3(1.98e-05)]_64 chrXII:198378-199791 9.81e-01 100 chrVII:806116-807972 1.69e-01 100 chrXV:779723-781069 2.82e-02 100 chrXIII:225335-227886 3.65e-01 100 chrV:85066-87012 9.49e-01 100 chrXVI:591055-591634 5.36e-01 100 chrII:370943-377452 1.85e-01 100 chrI:182178-183131 8.96e-01 100 chrXV:670848-672259 1.25e-01 100 chrIV:690067-691133 3.94e-03 27_[-3(8.85e-07)]_62 chrXIII:826425-826937 9.74e-02 100 chrVI:167238-167711 1.52e-06 64_[-1(4.79e-10)]_6 chrXII:793782-797409 6.48e-01 100 chrVIII:174719-175719 2.67e-01 100 chrX:540896-540996 6.25e-01 100 chrVII:227350-228550 7.65e-01 100 chrVIII:388628-388998 7.59e-02 9_[+3(8.68e-05)]_80 chrXII:930575-931850 2.19e-01 100 chrXIII:305751-307388 6.83e-01 100 chrXIV:241427-241714 2.90e-01 100 chrXIV:758620-759974 1.83e-01 100 chrVII:328398-329054 2.62e-01 100 chrXVI:775633-776028 9.83e-01 100 chrXIII:145915-147648 8.87e-01 100 chrIV:1461464-1461838 3.83e-01 100 chrXV:571718-572136 1.17e-02 17_[-3(8.72e-06)]_72 chrXIII:296751-298933 3.25e-02 100 chrVII:828377-828972 3.49e-01 100 chrII:36252-36850 3.37e-03 6_[-3(5.12e-06)]_83 chrX:355196-355296 5.97e-07 67_[-1(5.10e-09)]_3 chrVI:98808-99119 5.56e-01 100 chrXVI:296940-297319 8.77e-01 100 chrV:490685-492569 3.82e-01 100 chrXI:307877-308464 9.73e-18 11_[+3(1.18e-05)]_8_[+1(1.36e-11)]_\ 1_[-2(1.48e-11)]_10 chrXII:903364-903673 4.35e-02 86_[-3(1.98e-05)]_3 chrXII:47474-49185 1.02e-01 100 chrXI:46382-46996 1.22e-01 76_[+3(9.99e-05)]_13 chrV:135219-136049 9.94e-01 100 chrIV:802572-803022 1.53e-02 100 chrVI:226384-226916 1.60e-01 9_[+3(7.14e-05)]_51_[+3(8.68e-05)]_\ 18 chrXIII:419849-420839 4.28e-01 100 chrXIV:104599-105102 2.52e-14 11_[+2(3.11e-12)]_[-1(2.97e-09)]_30 chrXIII:131635-132063 4.89e-07 32_[+1(7.38e-10)]_38 chrXII:567936-571049 4.45e-01 100 chrVII:951332-951794 7.84e-02 100 chrXI:140743-142799 6.89e-02 100 chrXI:517217-518348 5.08e-01 100 chrXII:1028221-1028603 7.80e-02 66_[-3(3.65e-05)]_23 chrII:592262-593324 4.09e-01 100 chrV:151712-153776 9.92e-02 100 chrXII:423799-424553 7.77e-01 100 chrIV:946153-946635 2.92e-06 19_[-1(4.79e-10)]_51 chrXII:201622-202706 3.48e-01 100 chrVI:224338-225997 4.13e-02 100 chrXVI:560028-560488 1.84e-06 45_[-2(4.18e-10)]_26 chrV:438477-438965 3.38e-15 35_[+2(1.48e-11)]_1_[-1(1.36e-11)]_\ 5 chrXIV:721164-723233 1.56e-02 82_[+3(5.12e-06)]_7 chrVII:702756-704276 2.00e-01 100 chrXII:403936-404433 1.08e-01 100 chrXVI:431775-432670 8.85e-03 11_[+3(9.99e-05)]_78 chrXII:932095-932523 4.39e-01 100 chrXV:903519-905793 1.96e-01 100 chrVII:1003956-1004439 3.87e-01 100 chrII:555742-558479 8.20e-01 100 chrXI:21316-21818 1.27e-02 100 chrXV:987044-987851 2.37e-02 53_[-2(5.49e-05)]_18 chrVII:700301-701260 9.49e-02 78_[-3(9.22e-05)]_11 chrXV:168111-168510 8.69e-01 100 chrVII:561286-561719 3.76e-01 100 chrXVI:239212-239514 2.41e-01 100 chrIII:84-1073 1.50e-01 100 chrXVI:819109-820303 1.65e-02 8_[-3(8.72e-06)]_81 chrVIII:292778-293524 1.56e-01 100 chrV:321950-323099 4.33e-01 100 chrXI:617626-619293 4.37e-01 100 chrXVI:622330-622971 3.09e-01 100 chrXIII:26225-26515 6.16e-01 100 chrXII:280738-281737 2.22e-01 100 chrXVI:770339-771105 8.31e-02 12_[+1(9.19e-05)]_58 chrVII:986406-987850 2.09e-02 27_[-3(8.72e-06)]_62 chrXVI:927653-928431 4.16e-01 100 chrXIII:67483-68028 4.63e-01 100 chrXV:92679-94789 4.68e-01 100 chrXIII:168233-169036 7.87e-01 100 chrIV:1359155-1361251 9.11e-01 100 chrV:305819-307531 4.39e-01 100 chrV:504882-505263 4.46e-01 100 chrIX:254957-257133 3.40e-01 100 chrXVI:930309-931223 9.34e-01 100 chrXV:504904-505476 6.14e-01 100 chrXII:948977-953667 5.22e-01 100 chrIV:1305441-1305899 1.04e-10 16_[+2(3.14e-10)]_10_[-1(5.03e-08)]_\ 15 chrXV:409068-409971 2.10e-01 100 chrVII:555071-558243 3.30e-01 100 chrXIII:653521-653855 8.87e-02 100 chrVIII:49962-51414 1.10e-01 10_[-3(4.29e-05)]_79 chrIV:368037-369202 6.09e-01 100 chrII:642833-643256 2.30e-09 3_[+3(1.98e-05)]_5_[+1(7.20e-09)]_\ 51 chrVII:345785-346741 3.21e-01 100 chrXV:977135-978371 4.31e-01 100 chrXIII:768171-768434 9.47e-01 100 chrXV:796810-797755 5.79e-01 100 chrX:391791-391891 3.96e-01 100 chrVII:422882-423500 1.12e-02 65_[-3(7.34e-05)]_24 chrX:290829-290929 3.83e-03 41_[+3(6.28e-05)]_48 chrXII:605125-605599 5.61e-01 100 chrIII:141985-142934 4.86e-02 100 chrII:413196-415314 2.20e-01 100 chrXIII:661481-662250 3.00e-01 100 chrXIV:499181-502768 6.14e-01 100 chrIV:884257-884956 3.55e-04 16_[-3(8.72e-06)]_1_[-3(5.12e-06)]_\ 61 chrIV:550499-551558 8.64e-03 57_[+3(1.18e-05)]_32 chrXI:313178-314017 7.27e-01 100 chrXI:202475-203256 2.88e-01 100 chrIX:391406-392142 2.84e-01 100 chrXI:364410-365472 4.53e-01 100 chrXV:638816-639546 4.78e-01 100 chrX:227687-227787 6.69e-01 100 chrXIII:650901-653049 1.73e-01 29_[-3(8.02e-05)]_60 chrVII:255182-255742 2.19e-01 100 chrII:255018-255761 1.21e-01 100 chrX:662548-662648 2.27e-01 100 chrVII:823347-823729 1.79e-15 [+2(1.48e-11)]_1_[-1(1.36e-11)]_40 chrXIII:905695-906417 6.10e-01 100 chrVII:765879-767099 3.17e-02 4_[+2(6.08e-05)]_67 chrXIII:472890-473274 8.54e-01 100 chrXII:1017686-1019362 9.84e-01 100 chrVIII:34337-36450 3.65e-01 100 chrIX:380143-380893 3.42e-01 100 chrII:162969-164188 1.87e-01 100 chrVIII:411006-411766 5.09e-01 100 chrXVI:424895-425671 5.01e-03 [+3(8.72e-06)]_89 chrXII:374197-374662 1.77e-06 11_[-1(1.24e-09)]_59 chrVII:845462-846102 3.48e-01 100 chrXIII:282752-283166 2.87e-01 100 chrV:266111-268190 6.81e-01 100 chrVI:106499-106823 1.24e-05 27_[-2(5.84e-08)]_44 chrIV:1095140-1095631 6.18e-08 21_[+3(8.72e-06)]_9_[+1(4.67e-09)]_\ 29 chrXII:257725-259546 7.99e-01 100 chrIV:509551-509967 3.34e-01 100 chrVII:930695-931641 6.30e-01 100 chrX:348748-348848 3.74e-01 100 chrI:65830-67899 5.75e-03 71_[-2(3.59e-05)] chrVIII:531012-531716 7.18e-01 100 chrXV:113598-113882 5.94e-01 100 chrXI:164944-165609 1.46e-01 100 chrXIV:88899-90068 7.64e-01 100 chrVII:876197-879037 7.91e-01 100 chrXIV:569630-570079 5.87e-08 69_[+1(5.46e-11)]_1 chrX:172666-172766 1.27e-01 33_[-3(9.99e-05)]_56 chrXIV:442757-444777 6.86e-02 1_[-3(8.68e-05)]_88 chrX:90078-90178 4.70e-02 83_[-3(3.65e-05)]_6 chrV:237391-239023 5.19e-02 100 chrXII:855216-857662 6.39e-03 48_[-2(1.00e-05)]_23 chrXVI:840436-841079 6.81e-01 100 chrV:66733-69652 8.69e-01 100 chrVII:881663-884040 8.50e-01 100 chrXVI:821582-824275 9.10e-01 100 chrXV:594075-594635 2.51e-06 55_[+1(8.20e-10)]_15 chrX:605992-606092 7.18e-01 100 chrXV:40366-40655 6.29e-01 100 chrX:68978-69078 3.53e-01 100 chrXII:449234-450389 4.01e-01 100 chrXII:347989-348775 6.84e-01 100 chrVII:599384-601431 5.10e-01 100 chrXII:728171-730357 8.35e-01 100 chrXI:353908-356892 6.10e-01 100 chrXVI:39098-39461 2.93e-01 100 chrIV:1080402-1081055 3.00e-02 89_[-3(1.52e-05)] chrXIV:771627-772552 8.01e-02 100 chrIII:137699-139010 6.93e-03 27_[-2(2.10e-05)]_44 chrIV:1506992-1507727 4.84e-01 100 chrX:25762-25862 3.73e-01 100 chrXV:24237-24821 9.64e-01 100 chrIV:568703-569366 1.38e-05 14_[-1(5.10e-09)]_56 chrXII:1051909-1052203 1.04e-01 100 chrXIV:518781-519115 1.69e-02 24_[+2(2.17e-05)]_47 chrI:68306-68762 5.14e-01 100 chrIV:835775-836269 3.65e-01 100 chrV:99917-100356 7.54e-02 100 chrVIII:475297-475909 4.34e-02 [+3(8.72e-06)]_36_[+3(5.18e-05)]_42 chrVI:191213-191763 5.13e-02 61_[+3(1.98e-05)]_28 chrXIV:560391-561113 1.06e-07 27_[-2(3.11e-12)]_44 chrXVI:519870-520525 2.29e-01 100 chrII:326437-327096 3.00e-02 59_[+3(1.09e-05)]_30 chrIII:227740-229448 4.87e-01 100 chrXII:92349-92726 1.37e-01 100 chrXV:226430-226897 1.90e-08 4_[+1(1.01e-11)]_66 chrXII:805786-807184 2.59e-01 100 chrXII:783860-784669 4.68e-01 100 chrIII:107059-107858 1.36e-01 50_[+3(7.14e-05)]_14_[+3(6.28e-05)]_\ 14 chrXI:302715-303242 3.07e-05 58_[-1(2.03e-09)]_12 chrXV:216291-216715 1.06e-01 60_[-2(9.85e-05)]_11 chrXIII:510620-512276 7.75e-01 100 chrX:415710-415810 1.40e-07 5_[+3(1.09e-05)]_8_[+1(2.03e-09)]_\ 46 chrXVI:608117-608739 4.30e-01 100 chrIV:555333-556695 2.02e-01 100 chrIV:1164909-1166905 6.75e-01 100 chrXIII:755096-756907 1.13e-01 100 chrV:176910-177513 6.55e-01 100 chrIV:216554-218097 5.49e-02 100 chrV:363671-364072 4.64e-01 100 chrII:611925-614964 4.45e-01 100 chrIV:1268665-1271120 5.25e-01 100 chrXV:832240-833159 7.02e-02 38_[+2(6.71e-05)]_33 chrVI:210299-210880 1.01e-02 43_[+3(8.72e-06)]_14_[+3(8.02e-05)]_\ 21 chrXV:680269-680970 7.06e-02 78_[-3(2.88e-05)]_11 chrXI:513127-513591 3.16e-07 29_[+1(5.10e-09)]_41 chrV:138448-142396 9.88e-02 100 chrI:185572-186331 1.51e-01 100 chrV:550810-551581 1.10e-02 73_[-3(1.09e-05)]_16 chrXIII:309586-310104 8.81e-01 100 chrXIII:872697-872994 2.85e-01 100 chrXI:83999-84441 9.39e-06 44_[+2(8.47e-09)]_27 chrXI:163284-164577 9.94e-01 100 chrIV:1344663-1345954 1.79e-02 61_[+3(1.09e-05)]_28 chrIV:1256826-1257294 9.20e-07 4_[+1(1.50e-10)]_66 chrXV:347321-347895 1.40e-02 15_[-3(1.09e-05)]_74 chrIV:234224-234611 5.24e-01 100 chrXVI:744067-744619 8.18e-05 25_[-1(3.35e-08)]_45 chrIV:116279-118251 4.72e-01 100 chrXV:423604-425086 9.26e-01 100 chrX:119997-120097 6.34e-01 100 chrIX:25946-26978 2.79e-01 100 chrXI:146814-147505 6.15e-01 100 chrXII:187231-187603 2.13e-02 49_[+3(2.07e-05)]_40 chrIV:1488357-1490709 7.24e-01 100 chrXII:711502-712881 1.44e-02 47_[-3(5.12e-06)]_42 chrVII:856480-857644 4.51e-01 100 chrXVI:701840-702357 5.84e-02 100 chrIV:132653-133517 1.92e-01 100 chrIV:1016957-1017493 4.74e-11 20_[+3(1.98e-05)]_7_[+1(4.22e-13)]_\ 32 chrXII:924071-924234 5.69e-01 100 chrXV:382601-384347 7.61e-01 100 chrIV:220999-222297 3.81e-01 100 chrXV:976384-976963 4.66e-01 100 chrXV:980170-981148 7.09e-01 100 chrXII:924431-924842 4.56e-01 100 chrII:662090-662827 5.94e-02 21_[+3(1.52e-05)]_68 chrXVI:585674-588192 3.23e-01 100 chrXIII:431668-432563 4.89e-01 100 chrXIV:355069-355659 4.06e-01 100 chrXVI:627329-627750 4.14e-04 71_[-3(2.28e-06)]_18 chrXI:107430-110488 2.57e-01 100 chrV:76942-80023 2.42e-01 100 chrXIII:162949-164353 6.05e-01 100 chrVII:786945-788745 9.91e-01 100 chrXV:1027763-1029093 9.29e-02 7_[-2(8.97e-05)]_64 chrVI:30224-32424 1.35e-02 10_[+3(1.52e-05)]_79 chrVI:137179-137693 8.63e-02 41_[+3(4.48e-05)]_48 chrI:141643-143718 7.78e-01 100 chrXIII:195932-196302 4.16e-07 7_[+1(5.96e-10)]_63 chrXI:38670-39312 9.95e-01 100 chrXIV:10070-10417 1.25e-02 21_[+3(8.72e-06)]_68 chrXIV:661993-662525 2.91e-01 100 chrV:288161-288755 1.61e-04 41_[+1(2.38e-07)]_29 chrVII:541722-542168 4.17e-01 100 chrXII:253111-255327 1.08e-01 100 chrVI:63977-65351 1.45e-01 100 chrIV:359368-359793 8.67e-08 53_[+2(1.13e-11)]_18 chrX:378214-378314 3.33e-17 12_[+2(1.48e-11)]_1_[-1(1.36e-11)]_\ 11_[-3(4.29e-05)]_6 chrIV:437561-438123 1.19e-04 24_[-1(9.40e-08)]_46 chrXI:558401-559489 9.30e-01 100 chrVII:533347-535177 8.56e-01 100 chrIII:157482-158037 7.07e-01 100 chrIV:1434400-1436084 6.70e-01 100 chrXVI:213065-216055 4.67e-01 100 chrVII:371151-371519 2.52e-02 100 chrXII:703743-704703 2.23e-02 82_[+3(5.12e-06)]_7 chrXII:368739-372479 2.98e-01 100 chrXV:487442-487778 8.47e-01 100 chrXV:348682-349415 9.76e-01 100 chrXIV:725933-726375 2.37e-06 15_[+3(5.18e-05)]_10_[+1(1.38e-08)]_\ 34 chrXV:907671-911623 6.69e-01 100 chrX:390792-390892 1.62e-08 10_[+3(2.37e-05)]_21_[+1(1.18e-10)]_\ 28 chrXII:780585-781878 1.95e-01 100 chrIV:1301589-1302610 5.46e-01 100 chrXII:242189-243455 4.75e-01 100 chrX:196970-197070 1.73e-02 84_[+3(4.29e-05)]_5 chrXI:463001-463955 5.81e-01 100 chrIX:96770-97607 5.73e-01 100 chrXIII:222255-223828 8.42e-01 100 chrII:251187-251835 6.12e-01 100 chrXII:1012019-1012491 1.43e-01 100 chrVII:287137-287643 2.82e-06 16_[+1(2.03e-09)]_54 chrXV:1053857-1054590 1.35e-01 100 chrII:378799-379482 7.13e-01 100 chrXIV:426546-427289 4.98e-02 [-3(2.07e-05)]_89 chrXIII:549881-553254 8.19e-01 100 chrX:702321-702421 4.02e-02 100 chrV:53546-53993 4.57e-01 100 chrX:549702-549802 4.11e-01 100 chrVI:53191-55671 3.73e-01 100 chrIII:262701-263180 4.82e-01 100 chrXI:381615-382461 8.57e-01 100 chrXI:74408-74877 8.50e-14 13_[+3(8.68e-05)]_14_[+2(8.09e-11)]_\ 1_[-1(4.67e-09)]_2 chrIV:538805-539554 8.76e-01 100 chrII:159784-160030 8.41e-04 5_[+3(2.84e-06)]_84 chrIX:183303-183726 2.88e-06 13_[-2(2.11e-10)]_58 chrX:233679-233779 2.96e-02 58_[+2(7.05e-05)]_13 chrXV:836634-836941 5.94e-01 100 chrXV:27879-28167 1.66e-01 100 chrXIV:234257-235229 2.98e-01 100 chrIX:332004-334008 7.70e-01 100 chrXIII:808023-808536 5.20e-08 23_[+1(1.18e-10)]_47 chrX:607907-608007 3.92e-02 70_[-3(8.72e-06)]_19 chrVIII:126488-127773 6.22e-02 5_[-3(2.88e-05)]_84 chrXV:390740-392705 6.82e-01 100 chrVIII:296664-297216 7.28e-01 100 chrXIII:372189-372656 1.98e-01 100 chrXV:700816-701149 6.23e-01 100 chrXI:260232-260879 2.24e-02 47_[+3(5.12e-06)]_42 chrXIV:413504-416241 6.45e-01 100 chrXIII:267657-268306 8.23e-01 100 chrV:130815-131360 2.29e-09 34_[+3(7.34e-05)]_6_[+1(2.41e-11)]_\ 19 chrXIII:320958-321313 1.97e-07 47_[+3(1.09e-05)]_10_[+1(4.27e-09)]_\ 2 chrII:350599-351147 5.40e-10 38_[-1(8.71e-12)]_15_[-3(6.28e-05)]_\ 6 chrXI:430590-433021 4.91e-02 100 chrXV:228127-228585 4.10e-12 31_[+2(8.09e-11)]_1_[-1(4.67e-09)]_\ 9 chrXVI:640947-641738 6.71e-01 100 chrVIII:400917-401375 3.34e-03 45_[+3(5.12e-06)]_44 chrXI:258083-260031 5.59e-02 66_[+3(3.65e-05)]_23 chrXIV:61374-64611 5.95e-01 100 chrVII:483217-484053 6.85e-02 19_[-3(3.65e-05)]_70 chrIII:168144-168546 5.84e-09 12_[+1(8.71e-12)]_58 chrI:181132-181515 1.09e-01 100 chrVII:647847-648497 5.49e-01 100 chrXV:443450-444405 7.61e-01 100 chrIV:619708-620176 6.60e-01 100 chrIV:1352068-1353070 7.48e-01 100 chrVIII:385142-386972 2.87e-01 100 chrIV:1468786-1469174 4.99e-01 100 chrII:405682-406372 1.08e-05 17_[-1(5.10e-09)]_53 chrXII:366042-366562 1.85e-01 100 chrIV:545764-546354 6.15e-01 100 chrIV:1330446-1330914 5.60e-01 100 chrXVI:731609-732289 3.67e-01 100 chrIV:1161448-1162099 6.83e-02 100 chrVI:82012-84536 6.81e-01 100 chrXVI:794474-796115 9.68e-01 100 chrXV:1049067-1049380 8.81e-02 100 chrIV:1449854-1451455 3.50e-01 100 chrXV:925192-925440 4.43e-01 100 chrXV:259300-260009 6.43e-01 100 chrVII:590714-593020 4.67e-01 100 chrVIII:451209-453207 8.14e-01 100 chrVIII:148967-149488 8.14e-01 100 chrV:460543-462224 1.44e-01 100 chrXIV:559196-559925 3.33e-01 100 chrIX:248574-249461 6.77e-01 100 chrXIV:576342-576513 9.41e-01 100 chrX:26160-26260 2.99e-02 26_[-3(1.52e-05)]_63 chrVII:292-978 7.35e-01 100 chrXII:645257-646629 9.18e-03 27_[-1(2.28e-05)]_43 chrX:181865-181965 3.78e-01 100 chrXIV:525072-525282 9.78e-01 100 chrVII:147990-149550 7.85e-02 60_[-3(2.88e-05)]_29 chrXV:778207-779485 2.98e-01 100 chrXII:818507-820440 2.27e-02 16_[+3(2.88e-05)]_73 chrXV:892145-892583 5.15e-02 100 chrXI:261056-262282 6.80e-01 100 chrXII:522609-523654 7.40e-01 100 chrVIII:74713-76341 4.20e-01 100 chrX:517660-517760 5.32e-01 100 chrXII:925011-925409 1.30e-01 36_[-3(9.22e-05)]_53 chrIV:1236417-1238740 4.05e-02 61_[-3(8.72e-06)]_28 chrV:241905-243296 5.26e-01 100 chrX:424256-424356 3.92e-10 1_[+1(1.38e-08)]_11_[-2(8.47e-09)]_\ 29 chrXI:219724-220105 2.28e-11 37_[+2(5.51e-10)]_[-1(4.27e-09)]_4 chrVII:649690-650724 9.54e-01 100 chrXIV:350899-353033 1.89e-02 50_[-3(1.09e-05)]_39 chrVIII:16137-18538 1.45e-01 100 chrXII:656822-657204 4.90e-06 7_[-2(5.51e-10)]_64 chrXIII:586366-586911 4.25e-08 54_[+1(1.36e-11)]_16 chrIII:151115-151516 1.49e-15 8_[+3(8.85e-07)]_6_[+1(1.70e-10)]_\ [-2(3.07e-09)]_16 chrVII:436684-440045 9.50e-01 100 chrXV:160316-160742 5.73e-01 100 chrXIII:539965-541068 1.13e-02 1_[-3(1.09e-05)]_88 chrXIV:574867-576164 9.91e-01 100 chrXV:899820-901267 7.10e-01 100 chrIV:339987-341634 4.66e-01 100 chrII:696561-697931 4.15e-01 100 chrXVI:209961-210475 2.85e-10 30_[+1(1.05e-12)]_40 chrII:504510-504792 4.00e-02 72_[-3(1.52e-05)]_17 chrIX:254234-254546 7.71e-01 100 chrXI:142976-144294 9.29e-01 100 chrIX:231255-232446 6.69e-01 100 chrVII:115326-115723 2.19e-07 20_[+2(1.13e-11)]_51 chrV:435550-436004 1.07e-13 14_[+3(8.02e-05)]_6_[+1(1.70e-10)]_\ [-2(3.07e-09)]_10 chrX:617713-617813 1.66e-06 41_[+2(2.33e-10)]_30 chrVII:413101-413848 8.91e-03 76_[+3(9.22e-05)]_13 chrVII:316698-317467 5.93e-01 100 chrXIII:761139-761367 6.65e-01 100 chrVII:650889-651305 1.57e-01 100 chrXVI:785599-786276 6.97e-01 100 chrV:302760-303411 3.66e-01 100 chrXIV:618180-618731 9.17e-01 100 chrXVI:699593-700721 6.77e-01 100 chrVI:19296-20060 6.17e-02 5_[+3(5.18e-05)]_84 chrV:249788-250512 2.47e-02 40_[+2(7.77e-05)]_31 chrXIII:119225-119556 1.16e-01 100 chrXI:67719-69430 7.22e-01 100 chrXII:566436-566939 9.54e-01 100 chrVIII:422893-423789 1.29e-01 100 chrXIII:278825-280584 8.23e-01 100 chrV:396161-398062 7.13e-01 100 chrIV:980716-981147 5.56e-01 100 chrIV:1239375-1240332 4.23e-03 100 chrXI:518652-521092 4.39e-01 100 chrI:33933-34488 8.62e-01 100 chrXIII:480366-480826 7.33e-02 65_[+3(1.98e-05)]_24 chrXII:416606-416971 4.05e-01 100 chrXVI:880000-880573 1.54e-09 9_[+3(4.29e-05)]_17_[+3(5.12e-06)]_\ [+3(1.52e-05)]_7_[+1(5.46e-11)]_4 chrV:469278-469660 4.21e-08 44_[+2(1.48e-11)]_27 chrVII:736184-736782 1.66e-01 39_[-3(7.14e-05)]_50 chrVIII:505842-506193 9.37e-01 100 chrXV:312443-313328 8.98e-01 100 chrII:415539-416007 2.14e-02 48_[-3(5.12e-06)]_41 chrXVI:901057-902015 2.09e-02 89_[+3(5.12e-06)] chrXIV:87370-87827 7.74e-01 100 chrXII:875195-875703 7.34e-07 35_[-1(1.09e-08)]_15_[-3(5.18e-05)]_\ 9 chrVI:222878-224163 4.36e-01 100 chrXIII:407303-408960 4.65e-01 100 chrXIV:229486-230815 2.72e-01 100 chrXIV:716909-717152 4.31e-01 100 chrII:465892-467285 4.26e-01 100 chrXI:385130-385509 4.44e-01 100 chrV:27122-28798 3.24e-01 100 chrXIV:776562-777442 2.58e-02 4_[+3(4.29e-05)]_85 chrVIII:134146-134691 4.39e-02 88_[-3(2.37e-05)]_1 chrV:221042-222980 7.34e-01 100 chrIV:465166-465894 5.39e-01 100 chrXIII:352075-353210 4.95e-02 13_[-1(1.60e-05)]_57 chrVII:730967-731406 3.35e-12 7_[+2(8.09e-11)]_1_[-1(4.67e-09)]_\ 33 chrI:28218-29108 3.45e-01 100 chrV:351227-351722 6.24e-01 100 chrX:156082-156182 7.36e-01 100 chrXV:566044-566507 9.28e-01 100 chrXIII:379171-379623 8.21e-02 100 chrI:71613-73684 5.79e-01 100 chrV:268408-268678 5.45e-01 100 chrXII:282609-284010 3.27e-01 100 chrIV:541069-541991 2.06e-03 83_[+3(8.85e-07)]_6 chrXVI:39660-41108 3.82e-01 100 chrXI:589794-592513 9.37e-01 100 chrII:624548-625970 5.91e-01 100 chrXII:1028846-1030351 4.26e-02 29_[+3(8.68e-05)]_60 chrXV:663596-664096 3.15e-15 22_[+1(1.36e-11)]_1_[-2(1.48e-11)]_\ 18 chrXIII:290572-291576 5.82e-01 100 chrX:157491-157591 7.53e-02 100 chrXI:158235-159841 3.51e-01 100 chrXVI:689346-689873 1.41e-12 12_[+2(2.28e-12)]_9_[-1(2.38e-07)]_\ 20 chrVI:95477-95938 1.57e-01 100 chrV:42097-42713 4.43e-01 100 chrIII:315605-316410 7.86e-02 48_[-2(3.89e-05)]_23 chrIV:322189-323617 3.31e-01 100 chrV:143507-144208 1.27e-01 100 chrII:9458-9871 1.08e-05 15_[-1(1.38e-08)]_55 chrVII:779398-779967 1.17e-06 18_[-1(5.96e-10)]_52 chrIX:325739-326125 9.90e-01 100 chrXII:36631-37630 4.11e-01 100 chrXIV:209768-210154 7.71e-02 4_[+3(2.37e-05)]_85 chrXVI:338584-339440 6.07e-01 100 chrIV:392517-392833 8.13e-01 100 chrVII:122070-122615 8.88e-09 12_[-1(1.70e-10)]_58 chrV:354692-355352 3.41e-01 100 chrXVI:280457-283257 4.82e-01 100 chrV:117244-118302 6.48e-02 100 chrXIV:738827-740145 7.11e-02 45_[-3(4.29e-05)]_44 chrXII:167769-168232 1.86e-10 [+1(9.40e-08)]_9_[-2(3.14e-10)]_32 chrVII:705664-707184 7.66e-01 100 chrX:542796-542896 2.75e-01 100 chrIX:394318-396005 5.92e-01 100 chrXVI:572183-572723 1.37e-03 13_[-3(2.37e-05)]_41_[-1(6.88e-05)]_\ 5 chrIX:370231-370734 6.16e-11 19_[-1(1.05e-12)]_16_[-3(1.09e-05)]_\ 24 chrXII:975792-976184 5.66e-08 33_[+3(1.09e-05)]_7_[+1(4.67e-09)]_\ 19 chrVII:401435-401613 6.25e-10 59_[+1(1.05e-12)]_11 chrXII:837623-839531 8.98e-01 100 chrXIII:572704-573133 1.17e-12 21_[+1(1.18e-10)]_[-2(3.89e-08)]_20 chrVII:648728-649363 9.58e-02 89_[+3(6.28e-05)] chrII:44978-45330 6.95e-03 17_[+3(2.84e-06)]_72 chrXV:841387-843061 4.29e-01 100 chrXV:673670-674035 4.35e-01 100 chrXIV:631615-632115 2.44e-11 13_[+3(6.28e-05)]_13_[+1(4.56e-14)]_\ 33 chrVII:794194-794570 4.67e-01 100 chrXIII:388237-388753 8.54e-01 100 chrX:709803-709903 8.83e-01 100 chrXV:967979-968933 8.96e-01 100 chrXIII:837759-838227 2.70e-07 36_[-1(4.79e-10)]_34 chrXV:988245-989603 8.81e-01 100 chrXI:99261-105425 8.84e-01 100 chrXV:722878-724829 1.40e-01 45_[+1(7.65e-05)]_25 chrXV:725101-725696 8.20e-01 100 chrXIII:159242-160219 4.64e-02 34_[-3(1.52e-05)]_55 chrXVI:718260-719527 1.61e-01 100 chrX:115702-115802 1.04e-08 42_[+1(1.05e-12)]_28 chrIV:915187-917087 3.70e-01 100 chrIV:411077-411676 1.58e-01 100 chrXV:514316-514769 3.24e-01 100 chrXI:93582-94123 7.44e-02 100 chrIX:316150-318300 1.20e-01 100 chrXV:519865-521198 6.60e-02 11_[-3(2.37e-05)]_78 chrXII:241588-242004 4.07e-01 100 chrXIV:173793-174687 4.58e-02 100 chrII:197292-197841 1.09e-08 14_[-1(5.46e-11)]_32_[-3(4.29e-05)]_\ 1_[+3(6.28e-05)]_1 chrXII:234521-235090 6.91e-01 100 chrXII:262850-264529 1.28e-01 100 chrVII:397904-400145 2.92e-01 100 chrXIII:774056-774818 1.54e-01 100 chrV:60989-62152 4.20e-01 100 chrIV:1278605-1279373 1.45e-01 100 chrVII:411931-412561 2.96e-02 14_[+3(8.68e-05)]_58_[+3(1.09e-05)]_\ 6 chrXII:737749-738174 3.92e-01 100 chrX:349747-349847 3.34e-01 100 chrXI:7724-8784 3.29e-01 100 chrXVI:302679-304341 2.24e-01 100 chrVII:988756-990816 4.91e-03 35_[+3(1.52e-05)]_54 chrII:604091-607529 6.94e-01 100 chrVIII:555956-556449 9.65e-01 100 chrXV:758880-759585 4.59e-01 100 chrXIV:493377-495716 6.90e-02 41_[+3(1.98e-05)]_48 chrIV:1401313-1403525 5.14e-01 100 chrVIII:205817-206739 6.26e-03 28_[+3(8.85e-07)]_40_[-3(5.12e-06)]_\ 10 chrVIII:358278-358743 2.68e-07 24_[+1(4.67e-09)]_46 chrVII:545096-545996 1.31e-01 6_[+3(4.29e-05)]_83 chrVIII:119624-122611 9.68e-01 100 chrXIV:546530-547461 8.80e-01 100 chrVII:319245-320125 6.90e-01 100 chrII:476651-477810 6.64e-01 100 chrXVI:451707-454367 1.81e-01 100 chrII:59610-61254 3.62e-01 100 chrVII:738887-739699 5.18e-01 100 chrIX:257388-258169 7.34e-02 [-3(1.98e-05)]_89 chrXVI:920843-921533 8.85e-01 100 chrIII:123331-123826 4.25e-10 55_[+1(4.56e-14)]_15 chrXIV:763940-764500 9.83e-01 100 chrVII:576186-577438 5.62e-01 100 chrVI:220027-222021 6.88e-01 100 chrIX:98180-100024 8.39e-01 100 chrXIV:374684-375136 2.50e-12 15_[+2(4.18e-10)]_18_[-1(5.96e-10)]_\ 8 chrXVI:810586-810952 9.00e-03 100 chrVII:544406-544858 2.82e-06 1_[+1(5.10e-09)]_69 chrIV:600594-602403 4.37e-01 100 chrXIV:715510-716646 1.57e-01 42_[-3(9.22e-05)]_47 chrVI:131223-131733 2.39e-01 100 chrXV:677924-679150 4.77e-01 100 chrII:408127-409178 9.26e-01 100 chrIV:433698-434864 6.16e-15 39_[+1(2.97e-09)]_[-2(3.11e-12)]_2 chrVIII:379340-380359 1.24e-01 100 chrXIII:886992-889285 8.12e-01 100 chrII:680276-682354 1.60e-02 54_[+3(2.88e-05)]_35 chrXIII:498939-500878 1.72e-01 100 chrIII:177046-178823 2.94e-02 85_[-3(8.72e-06)]_4 chrVII:661533-661951 3.08e-01 100 chrIX:338712-339203 3.11e-01 100 chrVII:848663-848925 1.65e-01 100 chrXI:333916-334956 7.42e-01 100 chrXV:252160-255085 2.39e-01 100 chrIV:992726-993250 2.03e-01 100 chrV:487093-487589 3.14e-10 21_[+3(6.28e-05)]_14_[+1(1.05e-12)]_\ 24 chrX:73398-73498 9.86e-01 100 chrVI:263393-263771 3.31e-01 100 chrIII:295313-295860 2.35e-01 100 chrVIII:20874-21530 1.42e-01 8_[-3(8.68e-05)]_81 chrXIV:576690-577649 2.89e-01 100 chrVI:180698-181263 7.97e-08 50_[+1(1.01e-11)]_20 chrXIV:217211-217579 6.70e-01 100 chrV:335515-335951 1.70e-01 100 chrIX:267362-267570 6.01e-01 100 chrVII:479114-482963 6.66e-01 100 chrX:622140-622240 4.22e-01 100 chrXII:722669-723421 7.26e-01 100 chrXV:505678-507056 9.11e-03 44_[-1(6.03e-05)]_26 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************