******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SMP1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71812-73599 1.0000 100 chrI:81532-82377 1.0000 100 chrI:138976-139362 1.0000 100 chrI:166165-166562 1.0000 100 chrI:181122-181509 1.0000 100 chrI:182140-183136 1.0000 100 chrII:9442-9932 1.0000 100 chrII:36228-36650 1.0000 100 chrII:44789-45388 1.0000 100 chrII:60782-61976 1.0000 100 chrII:88930-90390 1.0000 100 chrII:165059-165453 1.0000 100 chrII:167881-169650 1.0000 100 chrII:180463-182120 1.0000 100 chrII:197261-197868 1.0000 100 chrII:226976-227355 1.0000 100 chrII:266188-266713 1.0000 100 chrII:326350-327091 1.0000 100 chrII:332319-332764 1.0000 100 chrII:333314-333833 1.0000 100 chrII:347424-348021 1.0000 100 chrII:350636-351070 1.0000 100 chrII:405692-406206 1.0000 100 chrII:415053-416109 1.0000 100 chrII:476793-477771 1.0000 100 chrII:592296-593402 1.0000 100 chrII:595000-595465 1.0000 100 chrII:603989-607118 1.0000 100 chrII:642819-643247 1.0000 100 chrII:644934-645404 1.0000 100 chrIII:66-653 1.0000 100 chrIII:82384-82647 1.0000 100 chrIII:90849-91115 1.0000 100 chrIII:123334-123816 1.0000 100 chrIII:127534-127932 1.0000 100 chrIII:137805-138982 1.0000 100 chrIII:142365-142963 1.0000 100 chrIII:149725-150169 1.0000 100 chrIII:151010-151527 1.0000 100 chrIII:163463-163900 1.0000 100 chrIII:168161-168569 1.0000 100 chrIII:178284-178749 1.0000 100 chrIII:227755-228520 1.0000 100 chrIII:295295-295954 1.0000 100 chrIII:315615-316058 1.0000 100 chrIII:316221-316596 1.0000 100 chrIV:5-243 1.0000 100 chrIV:45185-45877 1.0000 100 chrIV:83296-84050 1.0000 100 chrIV:116538-117584 1.0000 100 chrIV:130420-131024 1.0000 100 chrIV:216586-217539 1.0000 100 chrIV:221656-222347 1.0000 100 chrIV:229456-230807 1.0000 100 chrIV:307990-309361 1.0000 100 chrIV:321608-321990 1.0000 100 chrIV:340644-341819 1.0000 100 chrIV:358032-358458 1.0000 100 chrIV:359350-359769 1.0000 100 chrIV:392544-393867 1.0000 100 chrIV:410191-410819 1.0000 100 chrIV:411037-411666 1.0000 100 chrIV:434100-434885 1.0000 100 chrIV:437560-438025 1.0000 100 chrIV:488332-489154 1.0000 100 chrIV:490595-491543 1.0000 100 chrIV:491758-492652 1.0000 100 chrIV:519650-519914 1.0000 100 chrIV:520756-521161 1.0000 100 chrIV:538846-539360 1.0000 100 chrIV:555778-556392 1.0000 100 chrIV:568710-569388 1.0000 100 chrIV:578850-580603 1.0000 100 chrIV:600794-602226 1.0000 100 chrIV:619679-620192 1.0000 100 chrIV:644875-645374 1.0000 100 chrIV:667691-668261 1.0000 100 chrIV:802582-803028 1.0000 100 chrIV:835069-837980 1.0000 100 chrIV:884266-885075 1.0000 100 chrIV:946121-946630 1.0000 100 chrIV:980650-981161 1.0000 100 chrIV:992717-993309 1.0000 100 chrIV:1013511-1013985 1.0000 100 chrIV:1016982-1017489 1.0000 100 chrIV:1075104-1075744 1.0000 100 chrIV:1095152-1095647 1.0000 100 chrIV:1150729-1151164 1.0000 100 chrIV:1175744-1176082 1.0000 100 chrIV:1201526-1201991 1.0000 100 chrIV:1256873-1257293 1.0000 100 chrIV:1268502-1269406 1.0000 100 chrIV:1300868-1302364 1.0000 100 chrIV:1305412-1307720 1.0000 100 chrIV:1328822-1330030 1.0000 100 chrIV:1351900-1353091 1.0000 100 chrIV:1354738-1355977 1.0000 100 chrIV:1359420-1359871 1.0000 100 chrIV:1401120-1402565 1.0000 100 chrIV:1450790-1451207 1.0000 100 chrIV:1461479-1461849 1.0000 100 chrIV:1489366-1489954 1.0000 100 chrIX:68239-68520 1.0000 100 chrIX:98544-100214 1.0000 100 chrIX:174570-175574 1.0000 100 chrIX:183303-183724 1.0000 100 chrIX:197366-197828 1.0000 100 chrIX:210655-211038 1.0000 100 chrIX:248480-249018 1.0000 100 chrIX:253857-254594 1.0000 100 chrIX:255101-255855 1.0000 100 chrIX:257368-257726 1.0000 100 chrIX:266289-267743 1.0000 100 chrIX:300078-300476 1.0000 100 chrIX:315706-317934 1.0000 100 chrIX:324152-324394 1.0000 100 chrIX:325740-326170 1.0000 100 chrIX:336081-336636 1.0000 100 chrIX:370238-371263 1.0000 100 chrIX:391098-392149 1.0000 100 chrIX:427474-427803 1.0000 100 chrV:53464-54180 1.0000 100 chrV:61096-62160 1.0000 100 chrV:67300-69322 1.0000 100 chrV:77562-79474 1.0000 100 chrV:85102-87820 1.0000 100 chrV:99910-100318 1.0000 100 chrV:117596-118328 1.0000 100 chrV:130827-131378 1.0000 100 chrV:135101-136058 1.0000 100 chrV:138444-139771 1.0000 100 chrV:140454-140927 1.0000 100 chrV:176896-177457 1.0000 100 chrV:207352-207542 1.0000 100 chrV:249796-250507 1.0000 100 chrV:270089-271120 1.0000 100 chrV:288142-288746 1.0000 100 chrV:305813-306420 1.0000 100 chrV:311691-312287 1.0000 100 chrV:354723-355364 1.0000 100 chrV:362049-363257 1.0000 100 chrV:395611-395886 1.0000 100 chrV:396162-396631 1.0000 100 chrV:422797-423586 1.0000 100 chrV:431028-431933 1.0000 100 chrV:434374-434977 1.0000 100 chrV:435559-436014 1.0000 100 chrV:438505-438955 1.0000 100 chrV:441818-442695 1.0000 100 chrV:443085-443365 1.0000 100 chrV:469265-469889 1.0000 100 chrV:487081-487591 1.0000 100 chrV:492212-492571 1.0000 100 chrV:550959-551593 1.0000 100 chrVI:64259-65406 1.0000 100 chrVI:95472-95915 1.0000 100 chrVI:101157-102195 1.0000 100 chrVI:137277-137707 1.0000 100 chrVI:157838-158200 1.0000 100 chrVI:162021-162385 1.0000 100 chrVI:167229-167653 1.0000 100 chrVI:180655-181262 1.0000 100 chrVI:183409-183987 1.0000 100 chrVI:191187-191782 1.0000 100 chrVI:210470-211151 1.0000 100 chrVI:220504-223039 1.0000 100 chrVI:223237-224149 1.0000 100 chrVI:226458-227035 1.0000 100 chrVII:110164-110788 1.0000 100 chrVII:115320-115717 1.0000 100 chrVII:122050-122489 1.0000 100 chrVII:148193-149525 1.0000 100 chrVII:185507-185922 1.0000 100 chrVII:205328-205744 1.0000 100 chrVII:254117-254691 1.0000 100 chrVII:277001-277407 1.0000 100 chrVII:277601-278664 1.0000 100 chrVII:287163-287682 1.0000 100 chrVII:310395-312057 1.0000 100 chrVII:319226-320118 1.0000 100 chrVII:328418-329324 1.0000 100 chrVII:364928-366680 1.0000 100 chrVII:370772-371573 1.0000 100 chrVII:401429-401620 1.0000 100 chrVII:405458-405843 1.0000 100 chrVII:411753-412599 1.0000 100 chrVII:422878-423378 1.0000 100 chrVII:437448-438907 1.0000 100 chrVII:440524-441007 1.0000 100 chrVII:479189-479368 1.0000 100 chrVII:479561-482661 1.0000 100 chrVII:531370-531929 1.0000 100 chrVII:533637-535199 1.0000 100 chrVII:541707-542381 1.0000 100 chrVII:544399-544859 1.0000 100 chrVII:555136-555832 1.0000 100 chrVII:648800-649359 1.0000 100 chrVII:661525-661998 1.0000 100 chrVII:700385-701218 1.0000 100 chrVII:706915-707187 1.0000 100 chrVII:726362-728045 1.0000 100 chrVII:730950-732592 1.0000 100 chrVII:736185-736534 1.0000 100 chrVII:738909-739640 1.0000 100 chrVII:740396-741127 1.0000 100 chrVII:774134-774759 1.0000 100 chrVII:779429-779897 1.0000 100 chrVII:788104-788779 1.0000 100 chrVII:794261-794585 1.0000 100 chrVII:823337-823721 1.0000 100 chrVII:828422-828976 1.0000 100 chrVII:845450-846256 1.0000 100 chrVII:856566-857710 1.0000 100 chrVII:876157-878142 1.0000 100 chrVII:878556-879057 1.0000 100 chrVII:882764-883846 1.0000 100 chrVII:921094-921788 1.0000 100 chrVII:930620-931608 1.0000 100 chrVII:1000357-1000608 1.0000 100 chrVII:1004023-1004395 1.0000 100 chrVII:1057757-1060203 1.0000 100 chrVIII:34565-35105 1.0000 100 chrVIII:35277-36166 1.0000 100 chrVIII:62604-62917 1.0000 100 chrVIII:74788-75885 1.0000 100 chrVIII:103664-105206 1.0000 100 chrVIII:115910-116396 1.0000 100 chrVIII:125901-126331 1.0000 100 chrVIII:132418-132597 1.0000 100 chrVIII:132780-133120 1.0000 100 chrVIII:134136-134733 1.0000 100 chrVIII:145766-146470 1.0000 100 chrVIII:148755-149272 1.0000 100 chrVIII:173417-176779 1.0000 100 chrVIII:237760-238137 1.0000 100 chrVIII:266873-267224 1.0000 100 chrVIII:296834-297247 1.0000 100 chrVIII:358321-358777 1.0000 100 chrVIII:381516-382349 1.0000 100 chrVIII:382872-383365 1.0000 100 chrVIII:388708-389007 1.0000 100 chrVIII:451291-453026 1.0000 100 chrVIII:466830-467165 1.0000 100 chrVIII:475510-475914 1.0000 100 chrVIII:505775-506218 1.0000 100 chrVIII:555087-555448 1.0000 100 chrVIII:555752-556923 1.0000 100 chrVIII:562331-562595 1.0000 100 chrX:59016-59414 1.0000 100 chrX:73338-74626 1.0000 100 chrX:74883-75750 1.0000 100 chrX:89499-89785 1.0000 100 chrX:89998-90462 1.0000 100 chrX:115764-116271 1.0000 100 chrX:120474-121867 1.0000 100 chrX:139444-140185 1.0000 100 chrX:156059-157891 1.0000 100 chrX:196362-197449 1.0000 100 chrX:204545-205072 1.0000 100 chrX:227737-228569 1.0000 100 chrX:233516-234143 1.0000 100 chrX:353999-354460 1.0000 100 chrX:355177-355766 1.0000 100 chrX:365919-367369 1.0000 100 chrX:374176-374793 1.0000 100 chrX:378224-378652 1.0000 100 chrX:390848-392121 1.0000 100 chrX:396582-396950 1.0000 100 chrX:414778-415291 1.0000 100 chrX:415720-416236 1.0000 100 chrX:422667-423365 1.0000 100 chrX:424249-424713 1.0000 100 chrX:517658-518170 1.0000 100 chrX:523912-524382 1.0000 100 chrX:531566-532330 1.0000 100 chrX:538014-538875 1.0000 100 chrX:540860-542439 1.0000 100 chrX:542791-543261 1.0000 100 chrX:545380-546253 1.0000 100 chrX:569659-570487 1.0000 100 chrX:607881-609413 1.0000 100 chrX:617698-618231 1.0000 100 chrX:623570-624536 1.0000 100 chrX:651020-651634 1.0000 100 chrX:651961-652597 1.0000 100 chrX:663800-664842 1.0000 100 chrX:690598-691212 1.0000 100 chrX:703244-703652 1.0000 100 chrX:745038-745749 1.0000 100 chrXI:2-187 1.0000 100 chrXI:772-1044 1.0000 100 chrXI:46711-47002 1.0000 100 chrXI:67799-68304 1.0000 100 chrXI:74405-74887 1.0000 100 chrXI:83988-84467 1.0000 100 chrXI:99726-99955 1.0000 100 chrXI:108733-109675 1.0000 100 chrXI:140787-141341 1.0000 100 chrXI:143027-143350 1.0000 100 chrXI:158057-159309 1.0000 100 chrXI:162314-162745 1.0000 100 chrXI:202432-203282 1.0000 100 chrXI:219722-220116 1.0000 100 chrXI:259157-259853 1.0000 100 chrXI:283437-284434 1.0000 100 chrXI:302691-303267 1.0000 100 chrXI:307982-308643 1.0000 100 chrXI:313227-314034 1.0000 100 chrXI:326444-327526 1.0000 100 chrXI:379680-379896 1.0000 100 chrXI:382167-382472 1.0000 100 chrXI:382765-384301 1.0000 100 chrXI:431370-432312 1.0000 100 chrXI:457985-459336 1.0000 100 chrXI:490772-491267 1.0000 100 chrXI:512619-513594 1.0000 100 chrXI:517790-518070 1.0000 100 chrXI:525420-526614 1.0000 100 chrXI:578735-579498 1.0000 100 chrXI:618747-619293 1.0000 100 chrXI:666613-666800 1.0000 100 chrXII:47683-49497 1.0000 100 chrXII:92327-92828 1.0000 100 chrXII:126116-126589 1.0000 100 chrXII:167772-168273 1.0000 100 chrXII:198682-200059 1.0000 100 chrXII:201709-202677 1.0000 100 chrXII:214665-215071 1.0000 100 chrXII:231778-234170 1.0000 100 chrXII:241635-243392 1.0000 100 chrXII:261337-263343 1.0000 100 chrXII:282715-284633 1.0000 100 chrXII:366020-366559 1.0000 100 chrXII:369666-370257 1.0000 100 chrXII:370530-371340 1.0000 100 chrXII:373992-374644 1.0000 100 chrXII:424178-424481 1.0000 100 chrXII:426898-427427 1.0000 100 chrXII:448538-449034 1.0000 100 chrXII:459588-460729 1.0000 100 chrXII:498336-499720 1.0000 100 chrXII:515285-516500 1.0000 100 chrXII:522263-522462 1.0000 100 chrXII:592252-593018 1.0000 100 chrXII:605127-605628 1.0000 100 chrXII:628145-628640 1.0000 100 chrXII:628842-629105 1.0000 100 chrXII:636750-639905 1.0000 100 chrXII:656821-657213 1.0000 100 chrXII:673595-674257 1.0000 100 chrXII:713133-713678 1.0000 100 chrXII:728288-728577 1.0000 100 chrXII:730906-732374 1.0000 100 chrXII:734598-734982 1.0000 100 chrXII:781100-781891 1.0000 100 chrXII:783867-784522 1.0000 100 chrXII:793780-794103 1.0000 100 chrXII:796281-797716 1.0000 100 chrXII:805883-806821 1.0000 100 chrXII:818499-820376 1.0000 100 chrXII:838075-839287 1.0000 100 chrXII:873971-877092 1.0000 100 chrXII:897522-899748 1.0000 100 chrXII:903072-904454 1.0000 100 chrXII:921709-923793 1.0000 100 chrXII:932071-932543 1.0000 100 chrXII:951065-953173 1.0000 100 chrXII:953335-953996 1.0000 100 chrXII:962842-963276 1.0000 100 chrXII:975791-976181 1.0000 100 chrXII:1018118-1019661 1.0000 100 chrXII:1028205-1028624 1.0000 100 chrXII:1051959-1052229 1.0000 100 chrXIII:5436-5665 1.0000 100 chrXIII:91378-92292 1.0000 100 chrXIII:131651-132091 1.0000 100 chrXIII:145917-146289 1.0000 100 chrXIII:162339-162703 1.0000 100 chrXIII:168225-169034 1.0000 100 chrXIII:195957-196306 1.0000 100 chrXIII:224730-226572 1.0000 100 chrXIII:258848-259381 1.0000 100 chrXIII:290589-291170 1.0000 100 chrXIII:296726-298082 1.0000 100 chrXIII:298277-298874 1.0000 100 chrXIII:302860-303129 1.0000 100 chrXIII:320932-321329 1.0000 100 chrXIII:352070-353284 1.0000 100 chrXIII:362934-363299 1.0000 100 chrXIII:363491-363780 1.0000 100 chrXIII:372176-372666 1.0000 100 chrXIII:379077-379620 1.0000 100 chrXIII:420362-420837 1.0000 100 chrXIII:463322-463858 1.0000 100 chrXIII:480405-480825 1.0000 100 chrXIII:498950-500696 1.0000 100 chrXIII:504901-505213 1.0000 100 chrXIII:550028-551844 1.0000 100 chrXIII:572696-573279 1.0000 100 chrXIII:586206-586911 1.0000 100 chrXIII:671968-674796 1.0000 100 chrXIII:732021-732706 1.0000 100 chrXIII:747436-748149 1.0000 100 chrXIII:753219-755275 1.0000 100 chrXIII:768191-768454 1.0000 100 chrXIII:808109-808542 1.0000 100 chrXIII:837750-838260 1.0000 100 chrXIII:873448-874025 1.0000 100 chrXIV:6615-6993 1.0000 100 chrXIV:62004-62600 1.0000 100 chrXIV:62819-64467 1.0000 100 chrXIV:96061-96472 1.0000 100 chrXIV:102577-103201 1.0000 100 chrXIV:104583-105058 1.0000 100 chrXIV:241386-242187 1.0000 100 chrXIV:302683-303571 1.0000 100 chrXIV:330767-332392 1.0000 100 chrXIV:374632-375110 1.0000 100 chrXIV:442754-443241 1.0000 100 chrXIV:443411-445236 1.0000 100 chrXIV:495179-495945 1.0000 100 chrXIV:518682-519151 1.0000 100 chrXIV:525069-525301 1.0000 100 chrXIV:546533-547665 1.0000 100 chrXIV:560174-560993 1.0000 100 chrXIV:568052-568570 1.0000 100 chrXIV:569652-570096 1.0000 100 chrXIV:576902-577598 1.0000 100 chrXIV:602075-602551 1.0000 100 chrXIV:631666-632120 1.0000 100 chrXIV:632418-633119 1.0000 100 chrXIV:657532-661270 1.0000 100 chrXIV:725954-726397 1.0000 100 chrXIV:783684-784322 1.0000 100 chrXV:28756-30893 1.0000 100 chrXV:79729-80153 1.0000 100 chrXV:92909-94799 1.0000 100 chrXV:109561-110042 1.0000 100 chrXV:110853-111812 1.0000 100 chrXV:113576-113884 1.0000 100 chrXV:159169-160146 1.0000 100 chrXV:160326-160662 1.0000 100 chrXV:161115-161747 1.0000 100 chrXV:168078-168352 1.0000 100 chrXV:216278-216702 1.0000 100 chrXV:226447-226902 1.0000 100 chrXV:228119-228750 1.0000 100 chrXV:252900-254662 1.0000 100 chrXV:274454-275005 1.0000 100 chrXV:281985-282533 1.0000 100 chrXV:288032-288456 1.0000 100 chrXV:300910-301891 1.0000 100 chrXV:340156-340575 1.0000 100 chrXV:353912-354328 1.0000 100 chrXV:407507-408215 1.0000 100 chrXV:438467-439273 1.0000 100 chrXV:444618-446229 1.0000 100 chrXV:464288-464802 1.0000 100 chrXV:487432-487804 1.0000 100 chrXV:504930-505503 1.0000 100 chrXV:571705-572146 1.0000 100 chrXV:572330-572505 1.0000 100 chrXV:594302-594639 1.0000 100 chrXV:639094-639498 1.0000 100 chrXV:663648-664072 1.0000 100 chrXV:678623-679184 1.0000 100 chrXV:710116-710360 1.0000 100 chrXV:778602-780969 1.0000 100 chrXV:854014-854761 1.0000 100 chrXV:866311-868090 1.0000 100 chrXV:901403-901637 1.0000 100 chrXV:968117-968660 1.0000 100 chrXV:976376-976638 1.0000 100 chrXV:978779-979159 1.0000 100 chrXV:980155-980953 1.0000 100 chrXV:1003987-1004366 1.0000 100 chrXV:1025690-1026065 1.0000 100 chrXV:1027919-1029206 1.0000 100 chrXVI:55849-56432 1.0000 100 chrXVI:75367-76903 1.0000 100 chrXVI:188294-188927 1.0000 100 chrXVI:210007-210447 1.0000 100 chrXVI:280009-280242 1.0000 100 chrXVI:280624-281377 1.0000 100 chrXVI:281563-282269 1.0000 100 chrXVI:302659-302971 1.0000 100 chrXVI:303149-304040 1.0000 100 chrXVI:338472-339213 1.0000 100 chrXVI:378598-379000 1.0000 100 chrXVI:404491-406598 1.0000 100 chrXVI:432553-434143 1.0000 100 chrXVI:435673-436169 1.0000 100 chrXVI:518774-520544 1.0000 100 chrXVI:560032-560515 1.0000 100 chrXVI:572169-572590 1.0000 100 chrXVI:581868-582490 1.0000 100 chrXVI:622358-622838 1.0000 100 chrXVI:642340-643330 1.0000 100 chrXVI:689372-689882 1.0000 100 chrXVI:699513-700690 1.0000 100 chrXVI:731897-732310 1.0000 100 chrXVI:744081-744599 1.0000 100 chrXVI:768706-769512 1.0000 100 chrXVI:775628-776085 1.0000 100 chrXVI:785565-786782 1.0000 100 chrXVI:794491-796694 1.0000 100 chrXVI:810573-811793 1.0000 100 chrXVI:819347-820203 1.0000 100 chrXVI:856724-857168 1.0000 100 chrXVI:860198-860717 1.0000 100 chrXVI:880159-880580 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SMP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SMP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SMP1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 511 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 51100 N= 511 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.295 C 0.205 G 0.205 T 0.295 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SMP1/background): A 0.302 C 0.198 G 0.198 T 0.302 ******************************************************************************** ******************************************************************************** MOTIF YCDKRAGGTCMBSGGTTCGAYYCCS MEME-1 width = 25 sites = 78 llr = 1392 E-value = 8.3e-270 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCDKRAGGTCMBSGGTTCGAYYCCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2146233:3:12::::3a2:::: pos.-specific C 3721111::7533::::a::24a76 probability G 23355367::2467a:::7:1:::3 matrix T 5:3311::73:31::aa:::55:31 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * ** * * Relative 1.4 * **** * * Entropy 1.2 * * * ****** * (25.7 bits) 0.9 * * * ******** *** 0.7 * ** * ******** **** 0.5 ** ***************** **** 0.2 ** ********************** 0.0 ------------------------- Multilevel TCGGGAGGTCCGGGGTTCGATTCCC consensus CGTTAGAAATACCA A CC TG sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGGTCMBSGGTTCGAYYCCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------- chrXIV:631666-632120 - 13 1.20e-13 CGCTTAGGGT GCGGGAGGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrIII:123334-123816 - 62 1.20e-13 CGCTTAGGGT GCGGGAGGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrXVI:210007-210447 - 25 5.58e-12 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrXIII:290589-291170 + 9 5.58e-12 CGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrXI:140787-141341 - 14 5.58e-12 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrVII:401429-401620 - 63 5.58e-12 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:487081-487591 - 55 5.58e-12 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:176896-177457 + 10 5.58e-12 ACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrIV:1016982-1017489 - 32 5.58e-12 CACGTTCTCA CCGTGGAGACCGGGGTTCGACTCCC CGCTTCGGAG chrIII:82384-82647 - 7 5.58e-12 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATC chrXIV:569652-570096 - 53 6.03e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXII:1051959-1052229 - 37 6.03e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrV:550959-551593 - 69 6.03e-11 CTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrV:443085-443365 - 37 6.03e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrII:197261-197868 + 19 6.03e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXIII:480405-480825 - 66 7.01e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrX:414778-415291 + 20 7.01e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:185507-185922 - 60 7.01e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrV:435559-436014 - 26 7.01e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIX:300078-300476 - 11 7.01e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1351900-1353091 - 31 7.01e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXIII:131651-132091 - 14 1.45e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXI:162314-162745 - 18 1.45e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:736185-736534 + 68 1.45e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAG chrII:405692-406206 + 16 1.45e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXV:464288-464802 + 22 6.97e-10 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrII:350636-351070 + 61 7.87e-10 TCGGTTTTGA TCCGGACAACCCCGGTTCGAATCCG GGTAAGACCT chrXVI:860198-860717 + 8 1.26e-09 GTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrX:396582-396950 - 20 1.26e-09 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrVIII:475510-475914 - 54 1.41e-09 GCCTTCACAC GGCAAAGGTCCCGAGTTCGATCCTC GGTTGGAACA chrVII:440524-441007 - 11 1.58e-09 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrV:130827-131378 - 40 1.58e-09 TCGGTTTTGA TCCGAACAACCCCGGTTCGAATCCG GGTAAGACCT chrIV:1095152-1095647 - 31 1.58e-09 GGTCAAGATA TCTGGAGGTCCTGTGTTCGATCCAC AGAGTTCGCA chrII:36228-36650 + 65 1.58e-09 GGTCAAGTCA TCTGGAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrXIV:104583-105058 + 73 1.77e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATT chrVIII:115910-116396 - 14 1.77e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:174570-175574 + 47 1.77e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrII:266188-266713 + 16 1.77e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXV:663648-664072 - 12 2.20e-09 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXIII:420362-420837 - 49 2.20e-09 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrX:378224-378652 + 11 2.20e-09 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrVII:823337-823721 + 42 2.20e-09 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrV:438505-438955 + 59 2.20e-09 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXVI:856724-857168 + 44 2.73e-09 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXI:219722-220116 + 64 2.73e-09 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXIV:96061-96472 - 35 3.03e-09 CACCCTTCCA AGGTGGGGACACGGGTTCGATTCTC GTACCGCTCA chrVII:779429-779897 + 40 3.03e-09 CACCCTTCCA AGGTGGGGACACGGGTTCGATTCTC GTACCGCTCA chrXIII:463322-463858 + 51 4.58e-09 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrXII:793780-794103 + 64 4.58e-09 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrXII:426898-427427 + 57 4.58e-09 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrX:355177-355766 + 72 4.58e-09 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTC chrX:204545-205072 + 14 4.58e-09 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrVII:544399-544859 - 8 4.58e-09 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCG chrVII:531370-531929 + 48 4.58e-09 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrIX:336081-336636 - 51 4.58e-09 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrX:422667-423365 + 9 6.79e-09 TCTCATAA TCTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrIV:1175744-1176082 + 4 6.79e-09 TAA TCTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXV:288032-288456 + 52 9.04e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrXIII:837750-838260 + 27 9.04e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrIV:946121-946630 + 41 9.04e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrXII:975791-976181 - 57 1.56e-08 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXI:74405-74887 + 67 1.56e-08 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTC chrVI:137277-137707 - 54 1.56e-08 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrIII:127534-127932 + 72 1.56e-08 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTG chrXI:490772-491267 + 37 4.24e-08 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrV:492212-492571 - 21 4.24e-08 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrXIII:379077-379620 - 15 6.22e-08 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrXI:302691-303267 + 60 6.22e-08 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrX:415720-416236 - 13 6.22e-08 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrXVI:435673-436169 - 32 7.76e-08 AGATTGCAAA TCTGTTGGTCCTTAGTTCGATCCTG AGTGCGAGCT chrII:642819-643247 - 34 7.76e-08 AGATTGCAAA TCTGTTGGTCCTTAGTTCGATCCTG AGTGCGAGCT chrXVI:744081-744599 + 31 1.66e-07 GCACTTGTAA TGCAAAGGTCGTTAGTTCAATTCTG ACAGGTGGCA chrXVI:338472-339213 - 66 2.01e-07 GGGCTCATAA CCCTGATGTCCTCGGATCGAAACCG AGCGGCGCTA chrXV:710116-710360 + 50 2.01e-07 GGGCTCATAA CCCTGATGTCCTCGGATCGAAACCG AGCGGCGCTA chrIII:149725-150169 + 60 2.01e-07 GGGCTCATAA CCCTGATGTCCTCGGATCGAAACCG AGCGGCGCTA chrXIII:362934-363299 + 35 9.55e-07 ATCGTTGTGG CCGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrX:424249-424713 - 11 1.66e-06 TCTGTTGGAC GGTTGTCCGCGCGAGTTCGAACCTC GCATCCTTCA chrIV:519650-519914 + 60 1.66e-06 TCTGTTGGAC GGTTGTCCGCGCGAGTTCGAACCTC GCATCCTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGGTCMBSGGTTCGAYYCCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631666-632120 1.2e-13 12_[-1]_63 chrIII:123334-123816 1.2e-13 61_[-1]_14 chrXVI:210007-210447 5.6e-12 24_[-1]_51 chrXIII:290589-291170 5.6e-12 8_[+1]_67 chrXI:140787-141341 5.6e-12 13_[-1]_62 chrVII:401429-401620 5.6e-12 62_[-1]_13 chrV:487081-487591 5.6e-12 54_[-1]_21 chrV:176896-177457 5.6e-12 9_[+1]_66 chrIV:1016982-1017489 5.6e-12 31_[-1]_44 chrIII:82384-82647 5.6e-12 6_[-1]_69 chrXIV:569652-570096 6e-11 52_[-1]_23 chrXII:1051959-1052229 6e-11 36_[-1]_39 chrV:550959-551593 6e-11 68_[-1]_7 chrV:443085-443365 6e-11 36_[-1]_39 chrII:197261-197868 6e-11 18_[+1]_57 chrXIII:480405-480825 7e-11 65_[-1]_10 chrX:414778-415291 7e-11 19_[+1]_56 chrVII:185507-185922 7e-11 59_[-1]_16 chrV:435559-436014 7e-11 25_[-1]_50 chrIX:300078-300476 7e-11 10_[-1]_65 chrIV:1351900-1353091 7e-11 30_[-1]_45 chrXIII:131651-132091 1.5e-10 13_[-1]_62 chrXI:162314-162745 1.5e-10 17_[-1]_58 chrVII:736185-736534 1.5e-10 67_[+1]_8 chrII:405692-406206 1.5e-10 15_[+1]_60 chrXV:464288-464802 7e-10 21_[+1]_54 chrII:350636-351070 7.9e-10 60_[+1]_15 chrXVI:860198-860717 1.3e-09 7_[+1]_68 chrX:396582-396950 1.3e-09 19_[-1]_56 chrVIII:475510-475914 1.4e-09 53_[-1]_22 chrVII:440524-441007 1.6e-09 10_[-1]_65 chrV:130827-131378 1.6e-09 39_[-1]_36 chrIV:1095152-1095647 1.6e-09 30_[-1]_45 chrII:36228-36650 1.6e-09 64_[+1]_11 chrXIV:104583-105058 1.8e-09 72_[+1]_3 chrVIII:115910-116396 1.8e-09 13_[-1]_62 chrIX:174570-175574 1.8e-09 46_[+1]_29 chrII:266188-266713 1.8e-09 15_[+1]_60 chrXV:663648-664072 2.2e-09 11_[-1]_64 chrXIII:420362-420837 2.2e-09 48_[-1]_27 chrX:378224-378652 2.2e-09 10_[+1]_65 chrVII:823337-823721 2.2e-09 41_[+1]_34 chrV:438505-438955 2.2e-09 58_[+1]_17 chrXVI:856724-857168 2.7e-09 43_[+1]_32 chrXI:219722-220116 2.7e-09 63_[+1]_12 chrXIV:96061-96472 3e-09 34_[-1]_41 chrVII:779429-779897 3e-09 39_[+1]_36 chrXIII:463322-463858 4.6e-09 50_[+1]_25 chrXII:793780-794103 4.6e-09 63_[+1]_12 chrXII:426898-427427 4.6e-09 56_[+1]_19 chrX:355177-355766 4.6e-09 71_[+1]_4 chrX:204545-205072 4.6e-09 13_[+1]_62 chrVII:544399-544859 4.6e-09 7_[-1]_68 chrVII:531370-531929 4.6e-09 47_[+1]_28 chrIX:336081-336636 4.6e-09 50_[-1]_25 chrX:422667-423365 6.8e-09 8_[+1]_67 chrIV:1175744-1176082 6.8e-09 3_[+1]_72 chrXV:288032-288456 9e-09 51_[+1]_24 chrXIII:837750-838260 9e-09 26_[+1]_49 chrIV:946121-946630 9e-09 40_[+1]_35 chrXII:975791-976181 1.6e-08 56_[-1]_19 chrXI:74405-74887 1.6e-08 66_[+1]_9 chrVI:137277-137707 1.6e-08 53_[-1]_22 chrIII:127534-127932 1.6e-08 71_[+1]_4 chrXI:490772-491267 4.2e-08 36_[+1]_39 chrV:492212-492571 4.2e-08 20_[-1]_55 chrXIII:379077-379620 6.2e-08 14_[-1]_61 chrXI:302691-303267 6.2e-08 59_[+1]_16 chrX:415720-416236 6.2e-08 12_[-1]_63 chrXVI:435673-436169 7.8e-08 31_[-1]_44 chrII:642819-643247 7.8e-08 33_[-1]_42 chrXVI:744081-744599 1.7e-07 30_[+1]_45 chrXVI:338472-339213 2e-07 65_[-1]_10 chrXV:710116-710360 2e-07 49_[+1]_26 chrIII:149725-150169 2e-07 59_[+1]_16 chrXIII:362934-363299 9.5e-07 34_[+1]_41 chrX:424249-424713 1.7e-06 10_[-1]_65 chrIV:519650-519914 1.7e-06 59_[+1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGGTCMBSGGTTCGAYYCCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCDKRAGGTCMBSGGTTCGAYYCCS width=25 seqs=78 chrXIV:631666-632120 ( 13) GCGGGAGGTCCCGGGTTCGAGTCCC 1 chrIII:123334-123816 ( 62) GCGGGAGGTCCCGGGTTCGAGTCCC 1 chrXVI:210007-210447 ( 25) CCGTGGAGACCGGGGTTCGACTCCC 1 chrXIII:290589-291170 ( 9) CCGTGGAGACCGGGGTTCGACTCCC 1 chrXI:140787-141341 ( 14) CCGTGGAGACCGGGGTTCGACTCCC 1 chrVII:401429-401620 ( 63) CCGTGGAGACCGGGGTTCGACTCCC 1 chrV:487081-487591 ( 55) CCGTGGAGACCGGGGTTCGACTCCC 1 chrV:176896-177457 ( 10) CCGTGGAGACCGGGGTTCGACTCCC 1 chrIV:1016982-1017489 ( 32) CCGTGGAGACCGGGGTTCGACTCCC 1 chrIII:82384-82647 ( 7) CCGTGGAGACCGGGGTTCGACTCCC 1 chrXIV:569652-570096 ( 53) CGCGGGGATCAGCGGTTCGATCCCG 1 chrXII:1051959-1052229 ( 37) CGCGGGGATCAGCGGTTCGATCCCG 1 chrV:550959-551593 ( 69) CGCGGGGATCAGCGGTTCGATCCCG 1 chrV:443085-443365 ( 37) CGCGGGGATCAGCGGTTCGATCCCG 1 chrII:197261-197868 ( 19) CGCGGGGATCAGCGGTTCGATCCCG 1 chrXIII:480405-480825 ( 66) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrX:414778-415291 ( 20) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrVII:185507-185922 ( 60) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrV:435559-436014 ( 26) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrIX:300078-300476 ( 11) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrIV:1351900-1353091 ( 31) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrXIII:131651-132091 ( 14) TCAGAAGATTATGGGTTCGACCCCC 1 chrXI:162314-162745 ( 18) TCAGAAGATTATGGGTTCGACCCCC 1 chrVII:736185-736534 ( 68) TCAGAAGATTATGGGTTCGACCCCC 1 chrII:405692-406206 ( 16) TCAGAAGATTATGGGTTCGACCCCC 1 chrXV:464288-464802 ( 22) GCGAGAGGCCCTGGGTTCAATTCCC 1 chrII:350636-351070 ( 61) TCCGGACAACCCCGGTTCGAATCCG 1 chrXVI:860198-860717 ( 8) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrX:396582-396950 ( 20) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrVIII:475510-475914 ( 54) GGCAAAGGTCCCGAGTTCGATCCTC 1 chrVII:440524-441007 ( 11) TCTGGAGGTCCTGTGTTCGATCCAC 1 chrV:130827-131378 ( 40) TCCGAACAACCCCGGTTCGAATCCG 1 chrIV:1095152-1095647 ( 31) TCTGGAGGTCCTGTGTTCGATCCAC 1 chrII:36228-36650 ( 65) TCTGGAGGTCCTGTGTTCGATCCAC 1 chrXIV:104583-105058 ( 73) TGTGGAGATCATCGGTTCAAATCCG 1 chrVIII:115910-116396 ( 14) TGTGGAGATCATCGGTTCAAATCCG 1 chrIX:174570-175574 ( 47) TGTGGAGATCATCGGTTCAAATCCG 1 chrII:266188-266713 ( 16) TGTGGAGATCATCGGTTCAAATCCG 1 chrXV:663648-664072 ( 12) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXIII:420362-420837 ( 49) GCAGAACGTCCCCAGTTCGATCCTG 1 chrX:378224-378652 ( 11) GCAGAACGTCCCCAGTTCGATCCTG 1 chrVII:823337-823721 ( 42) GCAGAACGTCCCCAGTTCGATCCTG 1 chrV:438505-438955 ( 59) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXVI:856724-857168 ( 44) GGGAGAGGTCTCCGGTTCGATTCCG 1 chrXI:219722-220116 ( 64) GGGAGAGGTCTCCGGTTCGATTCCG 1 chrXIV:96061-96472 ( 35) AGGTGGGGACACGGGTTCGATTCTC 1 chrVII:779429-779897 ( 40) AGGTGGGGACACGGGTTCGATTCTC 1 chrXIII:463322-463858 ( 51) CGTGCCAGATCGGGGTTCAATTCCC 1 chrXII:793780-794103 ( 64) CGTGCCAGATCGGGGTTCAATTCCC 1 chrXII:426898-427427 ( 57) CGTGCCAGATCGGGGTTCAATTCCC 1 chrX:355177-355766 ( 72) CGTGCCAGATCGGGGTTCAATTCCC 1 chrX:204545-205072 ( 14) CGTGCCAGATCGGGGTTCAATTCCC 1 chrVII:544399-544859 ( 8) CGTGCCAGATCGGGGTTCAATTCCC 1 chrVII:531370-531929 ( 48) CGTGCCAGATCGGGGTTCAATTCCC 1 chrIX:336081-336636 ( 51) CGTGCCAGATCGGGGTTCAATTCCC 1 chrX:422667-423365 ( 9) TCTGAAGGTCGAGAGTTCGAACCTC 1 chrIV:1175744-1176082 ( 4) TCTGAAGGTCGAGAGTTCGAACCTC 1 chrXV:288032-288456 ( 52) TCTTGAGATCGGGCGTTCGACTCGC 1 chrXIII:837750-838260 ( 27) TCTTGAGATCGGGCGTTCGACTCGC 1 chrIV:946121-946630 ( 41) TCTTGAGATCGGGCGTTCGACTCGC 1 chrXII:975791-976181 ( 57) TCGCAAGATCGTGAGTTCAACCCTC 1 chrXI:74405-74887 ( 67) TCGCAAGATCGTGAGTTCAACCCTC 1 chrVI:137277-137707 ( 54) TCGCAAGATCGTGAGTTCAACCCTC 1 chrIII:127534-127932 ( 72) TCGCAAGATCGTGAGTTCAACCCTC 1 chrXI:490772-491267 ( 37) CCAGAAGATTCCAGGTTCAAGTCCT 1 chrV:492212-492571 ( 21) CCAGAAGATTCCAGGTTCAAGTCCT 1 chrXIII:379077-379620 ( 15) TCGAAGGGTTGCAGGTTCAATTCCT 1 chrXI:302691-303267 ( 60) TCGAAGGGTTGCAGGTTCAATTCCT 1 chrX:415720-416236 ( 13) TCGAAGGGTTGCAGGTTCAATTCCT 1 chrXVI:435673-436169 ( 32) TCTGTTGGTCCTTAGTTCGATCCTG 1 chrII:642819-643247 ( 34) TCTGTTGGTCCTTAGTTCGATCCTG 1 chrXVI:744081-744599 ( 31) TGCAAAGGTCGTTAGTTCAATTCTG 1 chrXVI:338472-339213 ( 66) CCCTGATGTCCTCGGATCGAAACCG 1 chrXV:710116-710360 ( 50) CCCTGATGTCCTCGGATCGAAACCG 1 chrIII:149725-150169 ( 60) CCCTGATGTCCTCGGATCGAAACCG 1 chrXIII:362934-363299 ( 35) CCGATGAAACCCTGGTTCGATTCTA 1 chrX:424249-424713 ( 11) GGTTGTCCGCGCGAGTTCGAACCTC 1 chrIV:519650-519914 ( 60) GGTTGTCCGCGCGAGTTCGAACCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGGTCMBSGGTTCGAYYCCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 38836 bayes= 10.4162 E= 8.3e-270 -355 80 -25 61 -1293 178 69 -1293 -47 -37 69 3 -139 -195 133 14 30 -95 122 -223 94 -95 44 -256 -47 -78 166 -297 9 -295 172 -1293 -16 -237 -295 114 -1293 183 -1293 -3 -16 137 -4 -355 -355 63 95 -10 -223 57 157 -256 -47 -237 183 -297 -1293 -1293 233 -1293 -297 -1293 -1293 167 -1293 -1293 -1293 173 -1293 233 -1293 -1293 -3 -1293 183 -1293 173 -1293 -1293 -1293 -86 30 -63 61 -297 114 -1293 80 -1293 233 -1293 -1293 -297 175 -237 -23 -455 157 75 -223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGGTCMBSGGTTCGAYYCCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 78 E= 8.3e-270 0.025641 0.346154 0.166667 0.461538 0.000000 0.679487 0.320513 0.000000 0.217949 0.153846 0.320513 0.307692 0.115385 0.051282 0.500000 0.333333 0.371795 0.102564 0.461538 0.064103 0.576923 0.102564 0.269231 0.051282 0.217949 0.115385 0.628205 0.038462 0.320513 0.025641 0.653846 0.000000 0.269231 0.038462 0.025641 0.666667 0.000000 0.705128 0.000000 0.294872 0.269231 0.512821 0.192308 0.025641 0.025641 0.307692 0.384615 0.282051 0.064103 0.294872 0.589744 0.051282 0.217949 0.038462 0.705128 0.038462 0.000000 0.000000 1.000000 0.000000 0.038462 0.000000 0.000000 0.961538 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.294872 0.000000 0.705128 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.243590 0.128205 0.461538 0.038462 0.435897 0.000000 0.525641 0.000000 1.000000 0.000000 0.000000 0.038462 0.666667 0.038462 0.256410 0.012821 0.589744 0.333333 0.064103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGGTCMBSGGTTCGAYYCCS MEME-1 regular expression -------------------------------------------------------------------------------- [TC][CG][GTA][GT][GA][AG][GA][GA][TA][CT][CA][GCT][GC][GA]GTTC[GA]A[TC][TC]C[CT][CG] -------------------------------------------------------------------------------- Time 245.02 secs. ******************************************************************************** ******************************************************************************** MOTIF GVNSVCYYWAMCCACTRVGCYAHVVVVSC MEME-2 width = 29 sites = 96 llr = 1476 E-value = 1.9e-244 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVNSVCYYWAMCCACTRVGCYAHVVVVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 123221:1355:39::433::a4433311 pos.-specific C 23254634114a6:8:23:a7:3333348 probability G 53344121:2::1:::447::::32334: matrix T 222::25452::::2a1:::3:3:111:1 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * * * * Relative 1.4 * *** * * Entropy 1.2 * *** **** * (22.2 bits) 0.9 ***** **** * 0.7 * ****** ***** ** 0.5 * **** ****** ****** ** 0.2 ** ************************** 0.0 ----------------------------- Multilevel GGGCCCTTTAACCACTAGGCCAAACGGCC consensus CAGGTCCATC A T GAA T CCACAG sequence AC A C TGGAC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSVCYYWAMCCACTRVGCYAHVVVVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:880159-880580 + 22 1.10e-11 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC ATTATATTGT chrXVI:856724-857168 - 6 1.10e-11 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC GAATC chrXIV:602075-602551 - 49 1.10e-11 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC ATTGTTATCT chrXII:1051959-1052229 + 72 1.10e-11 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC chrXII:734598-734982 - 62 1.10e-11 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC AAACTTTGTT chrXII:656821-657213 + 11 1.10e-11 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC AATTTTCTTG chrXI:219722-220116 - 26 1.10e-11 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC TATTTACTGT chrV:443085-443365 + 72 1.10e-11 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC chrIX:183303-183724 + 22 1.10e-11 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC AGGAATTTGT chrXIV:725954-726397 + 64 8.31e-11 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC AAAGATTT chrXII:962842-963276 + 18 8.31e-11 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrXI:83988-84467 - 31 8.31e-11 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC ATACAAATTT chrX:424249-424713 + 56 8.31e-11 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrIV:519650-519914 - 11 8.31e-11 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC GTAAAATCAC chrXII:592252-593018 + 6 2.86e-10 AATCT GACGCCTTAAACCACTCGGCCAAACTCCC ATTGTATGTT chrX:617698-618231 - 5 2.86e-10 ACCTAAATCT GACGCCTTAAACCACTCGGCCAAACTCCC ATTG chrVII:794261-794585 - 44 1.02e-09 CTTGCAAGGG AAGCGCGCTACCAACTGCGCCATGTGCCC GCAATCTATG chrXIV:442754-443241 - 59 1.18e-09 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXII:628145-628640 - 41 1.18e-09 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrVII:422878-423378 - 14 1.18e-09 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCTGT chrVII:205328-205744 - 35 1.18e-09 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXV:353912-354328 + 15 1.59e-09 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGC AGTAAACCGT chrXIV:104583-105058 - 35 1.59e-09 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGC TGAGAACTTG chrVIII:115910-116396 + 48 1.59e-09 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGC TCTAATAGTG chrIX:174570-175574 - 9 1.59e-09 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGC TCGTACTT chrXIV:374632-375110 - 48 2.11e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAGTCCGC TTATTTTTCT chrXVI:622358-622838 + 55 2.43e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC ATATCAGAAT chrXVI:560032-560515 + 38 2.43e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TCAATTTCTA chrVIII:358321-358777 + 42 2.43e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrVIII:237760-238137 + 13 2.43e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrVII:440524-441007 + 64 2.43e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC ATATATTT chrVI:157838-158200 + 10 2.43e-09 TCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TTCTATTTAT chrII:36228-36650 - 9 2.43e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TTACAACT chrVII:115320-115717 - 20 3.20e-09 CTTAAAAGCC GAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrIV:359350-359769 - 68 3.20e-09 AGCC GAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrXIV:546533-547665 - 45 1.02e-08 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCC GATTATTTCG chrXIII:195957-196306 + 61 1.02e-08 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCC TTGTGAACTT chrXII:167772-168273 + 25 1.02e-08 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCC ATATGACTAT chrXII:92327-92828 - 21 1.02e-08 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCC TTATTAACTT chrIV:437560-438025 - 30 1.02e-08 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCC TTACTAATGA chrI:138976-139362 - 33 1.02e-08 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCC GTACTAATTG chrIV:1150729-1151164 + 17 1.15e-08 AAATAGCAGG CATCGCCTTAACCACTCGGCCACTGGGAC TGAAACACTT chrVII:122050-122489 - 50 1.46e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TAATTCGTTG chrVI:226458-227035 + 36 1.46e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC ATTTTAATCT chrV:435559-436014 + 60 1.46e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TCTTATTGTT chrIX:300078-300476 + 45 1.46e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TATTTCGTTG chrIV:1351900-1353091 + 65 1.46e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TATTTCG chrIV:1201526-1201991 - 42 1.46e-08 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGC TATTTATTTG chrVIII:466830-467165 - 43 2.31e-08 CATTACAAGT GCAACGCTCTACCACTAAGCTAAGGAGGC TAAAAATACA chrVII:1004023-1004395 - 57 2.31e-08 CATTACAAGT GCAACGCTCTACCACTAAGCTAAGGAGGC AAACCCTTGA chrVII:661525-661998 - 38 2.31e-08 CATTACAAGT GCAACGCTCTACCACTAAGCTAAGGAGGC AAATTTTTAC chrXIV:96061-96472 + 68 4.44e-08 CTTGGAAGGG TGGGATGATAACCACTACACTAACCGCCC ATGT chrVII:779429-779897 - 3 4.44e-08 CTTGGAAGGG TGGGATGATAACCACTACACTAACCGCCC GG chrXV:663648-664072 + 47 4.93e-08 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC ACTATTTGTT chrVII:823337-823721 - 3 4.93e-08 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC AC chrV:438505-438955 - 20 4.93e-08 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC TAATTTGTTG chrXI:74405-74887 - 28 5.47e-08 TTAACAGTCG CACGCCTTAACCAACTTGGCCATGGAGTC TAATTGCTAT chrIII:127534-127932 - 33 5.47e-08 TTAACAGTCG CACGCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrXV:340156-340575 + 28 1.10e-07 GTTCGTAGCC AGACGCCGTGACCATTGGGCCACGAGGAA CAGATCTTGA chrV:492212-492571 + 55 1.10e-07 GTTCGTAGCC AGACGCCGTGACCATTGGGCCACGAGGAA TAGGATGTTC chrXVI:775628-776085 + 2 1.32e-07 T CTGCTGCGCTACCACTGCGCCATACGAGC TTTTGAATTA chrXVI:435673-436169 + 65 1.32e-07 GATTTGCAAT CTGCTGCGCTACCACTGCGCCATACGAGC TTTTGTT chrXIII:808109-808542 + 14 1.32e-07 GATCAGAACC GAAAGTGATAACCACTACACTATAGGACC TTTTTCTTCT chrIV:802582-803028 + 19 1.32e-07 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC GACAATTCAT chrIV:520756-521161 - 64 1.32e-07 TCAAAACC GAAAGTGATAACCACTACACTATAGGACC CTAAAATGGA chrIII:168161-168569 + 29 1.32e-07 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC AGGACTTCTT chrII:642819-643247 + 67 1.32e-07 GATTTGCAAT CTGCTGCGCTACCACTGCGCCATACGAGC TTTCT chrII:350636-351070 - 24 2.49e-07 GATCAAAACC GAAAGTGATAACCACTACACTATAAAACC CTTTTATTGA chrXV:226447-226902 + 29 2.71e-07 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TGAATTTCTT chrX:396582-396950 + 52 2.71e-07 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TTACTTTTGA chrXIII:463322-463858 - 14 3.22e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA CAAATTTCTG chrXII:793780-794103 - 27 3.22e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA TTATATTACA chrXII:426898-427427 - 20 3.22e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA TAAGAAACAC chrX:374176-374793 + 33 3.22e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrX:355177-355766 - 35 3.22e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrVII:544399-544859 + 41 3.22e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGAAATATCT chrVII:531370-531929 - 11 3.22e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGTAACTCGA chrII:405692-406206 - 61 3.22e-07 CGCGACAAGC GCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrXIII:131651-132091 + 47 3.80e-07 GATTAGAAGT CAGACGCGTTGCCATTACGCCACGCGAGC TAAATTTCTT chrXI:162314-162745 + 51 3.80e-07 GATTAGAAGT CAGACGCGTTGCCATTACGCCACGCGAGC TAATATTTGT chrVII:736185-736534 - 31 3.80e-07 GATTAGAAGT CAGACGCGTTGCCATTACGCCACGCGAGC TATTGAAATT chrXIV:631666-632120 + 46 6.13e-07 GCACCCTAAG CGAGAATCATACCTCTAGACCACACGCCC GGTAGAAGTT chrXV:710116-710360 - 13 8.30e-07 GGTTATGAGC CCTGCGCGCTTCCACTGCGCCACGGCGCT GCTAATTCTT chrV:99910-100318 - 69 8.30e-07 AGC CCTGCGCGCTTCCACTGCGCCACGGCGCT TAGCCAACTT chrIII:149725-150169 - 23 8.30e-07 GGTTATGAGC CCTGCGCGCTTCCACTGCGCCACGGCGCT CAACATTACA chrX:542791-543261 + 40 8.94e-07 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG TATTTAATTG chrX:353999-354460 - 65 8.94e-07 CAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG TGATAAATGA chrVI:167229-167653 - 46 8.94e-07 TTACAGTCTT GCGCCTTAAACCAACTTGGCTACCGAGAG TCATTTTTGT chrXIV:6615-6993 + 18 1.57e-06 CTCCCCACTC GTTACCCTGCCCCACTCAACCATACCACT CCCAACCACC chrXI:326444-327526 + 29 1.57e-06 AATACCGATT TCCATTTCTAACCATTGGTCCATAGCGGC CATTCTCTTG chrIII:316221-316596 - 56 1.57e-06 CTCCCCACTC GTTACCCTGCCCCACTCAACCATACCACT CCCAACCACC chrVII:878556-879057 + 31 2.18e-06 TAATTGGAGT CGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGAAAT chrVII:287163-287682 + 55 2.18e-06 TAATTGGAGT CGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGAAAT chrIV:1256873-1257293 + 18 2.18e-06 CTTGGGAAGC ATGAATTCTAACCACTGAACCACTTTCGC TAAGAAGATC chrXVI:75367-76903 - 70 7.61e-06 AA AATGAACTGAACCACTAAGCCAACAACAG AAATACAAAC chrXI:2-187 + 10 1.81e-05 ACCACACCC ACACACCACACCCACTACTCTAACCCTAT TCTAATCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSVCYYWAMCCACTRVGCYAHVVVVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:880159-880580 1.1e-11 21_[+2]_50 chrXVI:856724-857168 1.1e-11 5_[-2]_66 chrXIV:602075-602551 1.1e-11 48_[-2]_23 chrXII:1051959-1052229 1.1e-11 71_[+2] chrXII:734598-734982 1.1e-11 61_[-2]_10 chrXII:656821-657213 1.1e-11 10_[+2]_61 chrXI:219722-220116 1.1e-11 25_[-2]_46 chrV:443085-443365 1.1e-11 71_[+2] chrIX:183303-183724 1.1e-11 21_[+2]_50 chrXIV:725954-726397 8.3e-11 63_[+2]_8 chrXII:962842-963276 8.3e-11 17_[+2]_54 chrXI:83988-84467 8.3e-11 30_[-2]_41 chrX:424249-424713 8.3e-11 55_[+2]_16 chrIV:519650-519914 8.3e-11 10_[-2]_61 chrXII:592252-593018 2.9e-10 5_[+2]_66 chrX:617698-618231 2.9e-10 4_[-2]_67 chrVII:794261-794585 1e-09 43_[-2]_28 chrXIV:442754-443241 1.2e-09 58_[-2]_13 chrXII:628145-628640 1.2e-09 40_[-2]_31 chrVII:422878-423378 1.2e-09 13_[-2]_58 chrVII:205328-205744 1.2e-09 34_[-2]_37 chrXV:353912-354328 1.6e-09 14_[+2]_57 chrXIV:104583-105058 1.6e-09 34_[-2]_37 chrVIII:115910-116396 1.6e-09 47_[+2]_24 chrIX:174570-175574 1.6e-09 8_[-2]_63 chrXIV:374632-375110 2.1e-09 47_[-2]_24 chrXVI:622358-622838 2.4e-09 54_[+2]_17 chrXVI:560032-560515 2.4e-09 37_[+2]_34 chrVIII:358321-358777 2.4e-09 41_[+2]_30 chrVIII:237760-238137 2.4e-09 12_[+2]_59 chrVII:440524-441007 2.4e-09 63_[+2]_8 chrVI:157838-158200 2.4e-09 9_[+2]_62 chrII:36228-36650 2.4e-09 8_[-2]_63 chrVII:115320-115717 3.2e-09 19_[-2]_52 chrIV:359350-359769 3.2e-09 67_[-2]_4 chrXIV:546533-547665 1e-08 44_[-2]_27 chrXIII:195957-196306 1e-08 60_[+2]_11 chrXII:167772-168273 1e-08 24_[+2]_47 chrXII:92327-92828 1e-08 20_[-2]_51 chrIV:437560-438025 1e-08 29_[-2]_42 chrI:138976-139362 1e-08 32_[-2]_39 chrIV:1150729-1151164 1.1e-08 16_[+2]_55 chrVII:122050-122489 1.5e-08 49_[-2]_22 chrVI:226458-227035 1.5e-08 35_[+2]_36 chrV:435559-436014 1.5e-08 59_[+2]_12 chrIX:300078-300476 1.5e-08 44_[+2]_27 chrIV:1351900-1353091 1.5e-08 64_[+2]_7 chrIV:1201526-1201991 1.5e-08 41_[-2]_30 chrVIII:466830-467165 2.3e-08 42_[-2]_29 chrVII:1004023-1004395 2.3e-08 56_[-2]_15 chrVII:661525-661998 2.3e-08 37_[-2]_34 chrXIV:96061-96472 4.4e-08 67_[+2]_4 chrVII:779429-779897 4.4e-08 2_[-2]_69 chrXV:663648-664072 4.9e-08 46_[+2]_25 chrVII:823337-823721 4.9e-08 2_[-2]_69 chrV:438505-438955 4.9e-08 19_[-2]_52 chrXI:74405-74887 5.5e-08 27_[-2]_44 chrIII:127534-127932 5.5e-08 32_[-2]_39 chrXV:340156-340575 1.1e-07 27_[+2]_44 chrV:492212-492571 1.1e-07 54_[+2]_17 chrXVI:775628-776085 1.3e-07 1_[+2]_70 chrXVI:435673-436169 1.3e-07 64_[+2]_7 chrXIII:808109-808542 1.3e-07 13_[+2]_58 chrIV:802582-803028 1.3e-07 18_[+2]_53 chrIV:520756-521161 1.3e-07 63_[-2]_8 chrIII:168161-168569 1.3e-07 28_[+2]_43 chrII:642819-643247 1.3e-07 66_[+2]_5 chrII:350636-351070 2.5e-07 23_[-2]_48 chrXV:226447-226902 2.7e-07 28_[+2]_43 chrX:396582-396950 2.7e-07 51_[+2]_20 chrXIII:463322-463858 3.2e-07 13_[-2]_58 chrXII:793780-794103 3.2e-07 26_[-2]_45 chrXII:426898-427427 3.2e-07 19_[-2]_52 chrX:374176-374793 3.2e-07 32_[+2]_39 chrX:355177-355766 3.2e-07 34_[-2]_37 chrVII:544399-544859 3.2e-07 40_[+2]_31 chrVII:531370-531929 3.2e-07 10_[-2]_61 chrII:405692-406206 3.2e-07 60_[-2]_11 chrXIII:131651-132091 3.8e-07 46_[+2]_25 chrXI:162314-162745 3.8e-07 50_[+2]_21 chrVII:736185-736534 3.8e-07 30_[-2]_41 chrXIV:631666-632120 6.1e-07 45_[+2]_26 chrXV:710116-710360 8.3e-07 12_[-2]_59 chrV:99910-100318 8.3e-07 68_[-2]_3 chrIII:149725-150169 8.3e-07 22_[-2]_49 chrX:542791-543261 8.9e-07 39_[+2]_32 chrX:353999-354460 8.9e-07 64_[-2]_7 chrVI:167229-167653 8.9e-07 45_[-2]_26 chrXIV:6615-6993 1.6e-06 17_[+2]_54 chrXI:326444-327526 1.6e-06 28_[+2]_43 chrIII:316221-316596 1.6e-06 55_[-2]_16 chrVII:878556-879057 2.2e-06 30_[+2]_41 chrVII:287163-287682 2.2e-06 54_[+2]_17 chrIV:1256873-1257293 2.2e-06 17_[+2]_54 chrXVI:75367-76903 7.6e-06 69_[-2]_2 chrXI:2-187 1.8e-05 9_[+2]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSVCYYWAMCCACTRVGCYAHVVVVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVNSVCYYWAMCCACTRVGCYAHVVVVSC width=29 seqs=96 chrXVI:880159-880580 ( 22) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXVI:856724-857168 ( 6) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrXIV:602075-602551 ( 49) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:1051959-1052229 ( 72) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:734598-734982 ( 62) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:656821-657213 ( 11) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrXI:219722-220116 ( 26) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrV:443085-443365 ( 72) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrIX:183303-183724 ( 22) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXIV:725954-726397 ( 64) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXII:962842-963276 ( 18) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXI:83988-84467 ( 31) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrX:424249-424713 ( 56) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrIV:519650-519914 ( 11) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXII:592252-593018 ( 6) GACGCCTTAAACCACTCGGCCAAACTCCC 1 chrX:617698-618231 ( 5) GACGCCTTAAACCACTCGGCCAAACTCCC 1 chrVII:794261-794585 ( 44) AAGCGCGCTACCAACTGCGCCATGTGCCC 1 chrXIV:442754-443241 ( 59) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXII:628145-628640 ( 41) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrVII:422878-423378 ( 14) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrVII:205328-205744 ( 35) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXV:353912-354328 ( 15) TGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXIV:104583-105058 ( 35) TGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrVIII:115910-116396 ( 48) TGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIX:174570-175574 ( 9) TGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXIV:374632-375110 ( 48) TGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrXVI:622358-622838 ( 55) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrXVI:560032-560515 ( 38) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:358321-358777 ( 42) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:237760-238137 ( 13) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVII:440524-441007 ( 64) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVI:157838-158200 ( 10) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrII:36228-36650 ( 9) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVII:115320-115717 ( 20) GAACGCTCTACCAACTGAGCTAACAAGGA 1 chrIV:359350-359769 ( 68) GAACGCTCTACCAACTGAGCTAACAAGGA 1 chrXIV:546533-547665 ( 45) CGAGAATCATACCACTAGACCACACGCCC 1 chrXIII:195957-196306 ( 61) CGAGAATCATACCACTAGACCACACGCCC 1 chrXII:167772-168273 ( 25) TTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:92327-92828 ( 21) CGAGAATCATACCACTAGACCACACGCCC 1 chrIV:437560-438025 ( 30) TTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrI:138976-139362 ( 33) CGAGAATCATACCACTAGACCACACGCCC 1 chrIV:1150729-1151164 ( 17) CATCGCCTTAACCACTCGGCCACTGGGAC 1 chrVII:122050-122489 ( 50) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVI:226458-227035 ( 36) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrV:435559-436014 ( 60) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIX:300078-300476 ( 45) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1351900-1353091 ( 65) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1201526-1201991 ( 42) ATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVIII:466830-467165 ( 43) GCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:1004023-1004395 ( 57) GCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:661525-661998 ( 38) GCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrXIV:96061-96472 ( 68) TGGGATGATAACCACTACACTAACCGCCC 1 chrVII:779429-779897 ( 3) TGGGATGATAACCACTACACTAACCGCCC 1 chrXV:663648-664072 ( 47) GATGCCATAACCGACTAGACCACGAAACC 1 chrVII:823337-823721 ( 3) GATGCCATAACCGACTAGACCACGAAACC 1 chrV:438505-438955 ( 20) GATGCCATAACCGACTAGACCACGAAACC 1 chrXI:74405-74887 ( 28) CACGCCTTAACCAACTTGGCCATGGAGTC 1 chrIII:127534-127932 ( 33) CACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXV:340156-340575 ( 28) AGACGCCGTGACCATTGGGCCACGAGGAA 1 chrV:492212-492571 ( 55) AGACGCCGTGACCATTGGGCCACGAGGAA 1 chrXVI:775628-776085 ( 2) CTGCTGCGCTACCACTGCGCCATACGAGC 1 chrXVI:435673-436169 ( 65) CTGCTGCGCTACCACTGCGCCATACGAGC 1 chrXIII:808109-808542 ( 14) GAAAGTGATAACCACTACACTATAGGACC 1 chrIV:802582-803028 ( 19) GAAAGTGATAACCACTACACTATAGGACC 1 chrIV:520756-521161 ( 64) GAAAGTGATAACCACTACACTATAGGACC 1 chrIII:168161-168569 ( 29) GAAAGTGATAACCACTACACTATAGGACC 1 chrII:642819-643247 ( 67) CTGCTGCGCTACCACTGCGCCATACGAGC 1 chrII:350636-351070 ( 24) GAAAGTGATAACCACTACACTATAAAACC 1 chrXV:226447-226902 ( 29) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrX:396582-396950 ( 52) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:463322-463858 ( 14) GCCCATTCTGACCATTAAACTATCACGGA 1 chrXII:793780-794103 ( 27) GCCCATTCTGACCATTAAACTATCACGGA 1 chrXII:426898-427427 ( 20) GCCCATTCTGACCATTAAACTATCACGGA 1 chrX:374176-374793 ( 33) GCCCATTCTGACCATTAAACTATCACGGA 1 chrX:355177-355766 ( 35) GCCCATTCTGACCATTAAACTATCACGGA 1 chrVII:544399-544859 ( 41) GCCCATTCTGACCATTAAACTATCACGGA 1 chrVII:531370-531929 ( 11) GCCCATTCTGACCATTAAACTATCACGGA 1 chrII:405692-406206 ( 61) GCCCATTCTGACCATTAAACTATCACGGA 1 chrXIII:131651-132091 ( 47) CAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXI:162314-162745 ( 51) CAGACGCGTTGCCATTACGCCACGCGAGC 1 chrVII:736185-736534 ( 31) CAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXIV:631666-632120 ( 46) CGAGAATCATACCTCTAGACCACACGCCC 1 chrXV:710116-710360 ( 13) CCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrV:99910-100318 ( 69) CCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrIII:149725-150169 ( 23) CCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrX:542791-543261 ( 40) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrX:353999-354460 ( 65) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:167229-167653 ( 46) GCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrXIV:6615-6993 ( 18) GTTACCCTGCCCCACTCAACCATACCACT 1 chrXI:326444-327526 ( 29) TCCATTTCTAACCATTGGTCCATAGCGGC 1 chrIII:316221-316596 ( 56) GTTACCCTGCCCCACTCAACCATACCACT 1 chrVII:878556-879057 ( 31) CGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrVII:287163-287682 ( 55) CGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrIV:1256873-1257293 ( 18) ATGAATTCTAACCACTGAACCACTTTCGC 1 chrXVI:75367-76903 ( 70) AATGAACTGAACCACTAAGCCAACAACAG 1 chrXI:2-187 ( 10) ACACACCACACCCACTACTCTAACCCTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSVCYYWAMCCACTRVGCYAHVVVVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 36792 bayes= 9.67992 E= 1.9e-244 -127 0 133 -77 -33 33 79 -86 -16 21 56 -53 -77 121 88 -1323 -53 92 92 -285 -186 150 -44 -53 -327 50 -16 76 -140 88 -79 43 5 -67 -267 82 67 -93 0 -46 76 111 -267 -327 -1323 233 -1323 -1323 -16 161 -67 -1323 165 -1323 -225 -485 -1323 196 -1323 -40 -1323 -1323 -1323 173 31 -25 88 -169 0 50 107 -1323 -5 -1323 179 -385 -1323 233 -1323 -1323 -1323 175 -1323 14 173 -1323 -1323 -1323 54 56 -1323 -16 31 66 45 -285 0 66 27 -105 0 66 75 -253 5 39 79 -186 -186 117 111 -285 -127 196 -225 -227 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSVCYYWAMCCACTRVGCYAHVVVVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 96 E= 1.9e-244 0.125000 0.197917 0.500000 0.177083 0.239583 0.250000 0.343750 0.166667 0.270833 0.229167 0.291667 0.208333 0.177083 0.458333 0.364583 0.000000 0.208333 0.375000 0.375000 0.041667 0.083333 0.562500 0.145833 0.208333 0.031250 0.281250 0.177083 0.510417 0.114583 0.364583 0.114583 0.406250 0.312500 0.125000 0.031250 0.531250 0.479167 0.104167 0.197917 0.218750 0.510417 0.427083 0.031250 0.031250 0.000000 1.000000 0.000000 0.000000 0.270833 0.604167 0.125000 0.000000 0.947917 0.000000 0.041667 0.010417 0.000000 0.770833 0.000000 0.229167 0.000000 0.000000 0.000000 1.000000 0.375000 0.166667 0.364583 0.093750 0.302083 0.281250 0.416667 0.000000 0.291667 0.000000 0.687500 0.020833 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.437500 0.291667 0.000000 0.270833 0.375000 0.312500 0.270833 0.041667 0.302083 0.312500 0.239583 0.145833 0.302083 0.312500 0.333333 0.052083 0.312500 0.260417 0.343750 0.083333 0.083333 0.447917 0.427083 0.041667 0.125000 0.770833 0.041667 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNSVCYYWAMCCACTRVGCYAHVVVVSC MEME-2 regular expression -------------------------------------------------------------------------------- G[GCA][GACT][CG][CGA][CT][TC][TC][TA][AT][AC]C[CA]A[CT]T[AG][GAC][GA]C[CT]A[ACT][ACG][CAG][GCA][GAC][CG]C -------------------------------------------------------------------------------- Time 469.56 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTCGAWTCCSGBHKBKDBCRWTTTTTTT MEME-3 width = 29 sites = 25 llr = 495 E-value = 1.5e-057 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTCGAWTCCSGBHKBKDBCRWTTTTTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::2a4::::113:113:162321111: pos.-specific C :::a::13a74224232138:2:11:::: probability G a:::8:1:::363:53534:41:::1::: matrix T :aa:::47:32143322331157788999 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 **** * * Relative 1.4 ****** ** * Entropy 1.2 ****** ** * *** (28.6 bits) 0.9 ****** *** * * ***** 0.7 ****** *** * ** ******* 0.5 ****** ***** ** *** ******* 0.2 ***************** *** ******* 0.0 ----------------------------- Multilevel GTTCGATTCCCGTCGCGAGCATTTTTTTT consensus A AC TG GATGTGC GAAA sequence T CT T TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAWTCCSGBHKBKDBCRWTTTTTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrI:166165-166562 + 6 6.49e-13 CATCG GTTCGATTCCGGTTGCGTCCAAATTTTTT TGTTAATCCA chrXII:214665-215071 - 57 1.98e-12 GAGGTCATCG GTTCGATTCCGGTTGCGTCCATTTATTTT TTACTTTTAT chrXV:281985-282533 + 5 6.29e-12 CCCG GTTCGATTCCGGGCTTGCGCATTTCTTTT TTGTCCACCA chrVII:774134-774759 + 5 7.22e-12 TCCG GTTCGATTCCGGACTCGTCCAAATTTTTT TACTTTTAAT chrXIII:320932-321329 - 59 1.08e-11 GAGGTCTCCG GTTCGATTCCGGACTCGTCCATTTTTTAT TTTTTTGGCT chrV:288142-288746 - 41 2.05e-11 GCCCGCGCTG GTTCAAATCCTGCTGGTGTCGTTTTTTTT ATTGTTAGAG chrXV:976376-976638 + 16 3.77e-11 AAGGTCGAGA GTTCGAACCTCCCCTGGAGCAATATTTTT TTGCTAATAT chrII:226976-227355 + 21 1.04e-10 GCCCGCGCAG GTTCGAGTCCTGCAGTTGTCGTTATTTTT TGGACAGTAA chrVII:828422-828976 - 66 1.16e-10 TTATGG GTTCGACCCCCATCGTGAGTGCTTTTTTT GCAATAAAAA chrVI:180655-181262 - 58 1.97e-10 TGGGCCCCCG GTTCGATTCCGGGCTTGCGCAGTCCTTTT TTTAAGGATA chrXIV:725954-726397 - 1 2.66e-10 GTCCGCGCGA GTTCGAACCTCGCATCCTTCAGTATTTTT chrII:9442-9932 + 9 2.66e-10 CCGCGCGA GTTCGAACCTCGCATCCTTCAGTATTTTT TTTGATGATT chrIII:90849-91115 + 20 4.33e-10 AGATGCAAGA GTTCGAATCTCTTAGCAACCATTATTTTT TTCCTCAACA chrXVI:689372-689882 + 49 5.23e-10 GCCCGCGCTG GTTCAAATCCTGCTGGTGTCGTATTATTT TTTGAAATTA chrX:374176-374793 - 64 8.26e-10 GATTATGG GTTCGACCCCCATCGTGAGTGCTTTGTTT CTTCCGTGAT chrX:355177-355766 + 4 8.26e-10 TGG GTTCGACCCCCATCGTGAGTGCTTTGTTT CTTCCGTGAT chrXIII:372176-372666 - 66 9.03e-10 TCCCCA GTTCGATCCTGGGCGAAATCATTTTTTTA GCACTTTATC chrIX:324152-324394 - 72 9.86e-10 . GTTCAATTCCCCGTCGCGGAGATTTTTTT AGCATTTATT chrIII:151010-151527 - 58 1.51e-09 AAGGTTAGGG GTTCGAGCCCCCTACAGGGCTTTCTTTTT TCTTGGAAAA chrVI:191187-191782 - 71 1.79e-09 G GTTCGAATCCTGTCTGTGACGCATTTCTT TTTTAAATTT chrIV:568710-569388 + 16 2.28e-09 CCAGATCGGG GTTCAATTCCCCGTCGCGGAGAATTTTTT TTAATTGATA chrV:207352-207542 + 11 3.13e-09 TGAAACCCTG GTTCGATTCTAGGAGATGGCATATTTATT TTTTATATTC chrXVI:55849-56432 - 71 5.30e-09 G GTTCAATTCCTGTCCGTTTCAATTAATTT TTTTCCCCAT chrXI:457985-459336 + 40 9.30e-09 AGATGCAAGA GTTCGAATCTCTTAGCAACCATATTATAT ATTTTTTTAT chrIV:644875-645374 - 71 2.56e-08 G GTTCGAATCCGGGTAGGACCTTTTTTAAC TGTGGCTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAWTCCSGBHKBKDBCRWTTTTTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:166165-166562 6.5e-13 5_[+3]_66 chrXII:214665-215071 2e-12 56_[-3]_15 chrXV:281985-282533 6.3e-12 4_[+3]_67 chrVII:774134-774759 7.2e-12 4_[+3]_67 chrXIII:320932-321329 1.1e-11 58_[-3]_13 chrV:288142-288746 2e-11 40_[-3]_31 chrXV:976376-976638 3.8e-11 15_[+3]_56 chrII:226976-227355 1e-10 20_[+3]_51 chrVII:828422-828976 1.2e-10 65_[-3]_6 chrVI:180655-181262 2e-10 57_[-3]_14 chrXIV:725954-726397 2.7e-10 [-3]_71 chrII:9442-9932 2.7e-10 8_[+3]_63 chrIII:90849-91115 4.3e-10 19_[+3]_52 chrXVI:689372-689882 5.2e-10 48_[+3]_23 chrX:374176-374793 8.3e-10 63_[-3]_8 chrX:355177-355766 8.3e-10 3_[+3]_68 chrXIII:372176-372666 9e-10 65_[-3]_6 chrIX:324152-324394 9.9e-10 71_[-3] chrIII:151010-151527 1.5e-09 57_[-3]_14 chrVI:191187-191782 1.8e-09 70_[-3]_1 chrIV:568710-569388 2.3e-09 15_[+3]_56 chrV:207352-207542 3.1e-09 10_[+3]_61 chrXVI:55849-56432 5.3e-09 70_[-3]_1 chrXI:457985-459336 9.3e-09 39_[+3]_32 chrIV:644875-645374 2.6e-08 70_[-3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAWTCCSGBHKBKDBCRWTTTTTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTCGAWTCCSGBHKBKDBCRWTTTTTTT width=29 seqs=25 chrI:166165-166562 ( 6) GTTCGATTCCGGTTGCGTCCAAATTTTTT 1 chrXII:214665-215071 ( 57) GTTCGATTCCGGTTGCGTCCATTTATTTT 1 chrXV:281985-282533 ( 5) GTTCGATTCCGGGCTTGCGCATTTCTTTT 1 chrVII:774134-774759 ( 5) GTTCGATTCCGGACTCGTCCAAATTTTTT 1 chrXIII:320932-321329 ( 59) GTTCGATTCCGGACTCGTCCATTTTTTAT 1 chrV:288142-288746 ( 41) GTTCAAATCCTGCTGGTGTCGTTTTTTTT 1 chrXV:976376-976638 ( 16) GTTCGAACCTCCCCTGGAGCAATATTTTT 1 chrII:226976-227355 ( 21) GTTCGAGTCCTGCAGTTGTCGTTATTTTT 1 chrVII:828422-828976 ( 66) GTTCGACCCCCATCGTGAGTGCTTTTTTT 1 chrVI:180655-181262 ( 58) GTTCGATTCCGGGCTTGCGCAGTCCTTTT 1 chrXIV:725954-726397 ( 1) GTTCGAACCTCGCATCCTTCAGTATTTTT 1 chrII:9442-9932 ( 9) GTTCGAACCTCGCATCCTTCAGTATTTTT 1 chrIII:90849-91115 ( 20) GTTCGAATCTCTTAGCAACCATTATTTTT 1 chrXVI:689372-689882 ( 49) GTTCAAATCCTGCTGGTGTCGTATTATTT 1 chrX:374176-374793 ( 64) GTTCGACCCCCATCGTGAGTGCTTTGTTT 1 chrX:355177-355766 ( 4) GTTCGACCCCCATCGTGAGTGCTTTGTTT 1 chrXIII:372176-372666 ( 66) GTTCGATCCTGGGCGAAATCATTTTTTTA 1 chrIX:324152-324394 ( 72) GTTCAATTCCCCGTCGCGGAGATTTTTTT 1 chrIII:151010-151527 ( 58) GTTCGAGCCCCCTACAGGGCTTTCTTTTT 1 chrVI:191187-191782 ( 71) GTTCGAATCCTGTCTGTGACGCATTTCTT 1 chrIV:568710-569388 ( 16) GTTCAATTCCCCGTCGCGGAGAATTTTTT 1 chrV:207352-207542 ( 11) GTTCGATTCTAGGAGATGGCATATTTATT 1 chrXVI:55849-56432 ( 71) GTTCAATTCCTGTCCGTTTCAATTAATTT 1 chrXI:457985-459336 ( 40) GTTCGAATCTCTTAGCAACCATATTATAT 1 chrIV:644875-645374 ( 71) GTTCGAATCCGGGTAGGACCTTTTTTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAWTCCSGBHKBKDBCRWTTTTTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 36792 bayes= 11.0126 E= 1.5e-057 -1129 -1129 233 -1129 -1129 -1129 -1129 173 -1129 -1129 -1129 173 -1129 233 -1129 -1129 -59 -1129 201 -1129 173 -1129 -1129 -1129 26 -73 -131 54 -1129 69 -1129 117 -1129 233 -1129 -1129 -1129 186 -1129 -11 -291 115 69 -59 -133 -31 169 -191 -191 27 50 41 -11 115 -1129 -11 -291 -31 127 9 -133 69 69 -33 -133 -31 127 -33 9 -131 69 -11 -291 50 101 -11 -191 201 -1129 -133 89 -1129 86 -191 -33 -31 -73 67 -11 -1129 -1129 126 -59 -131 -1129 126 -191 -131 -1129 148 -133 -1129 -131 141 -191 -231 -1129 154 -133 -1129 -1129 154 -291 -231 -1129 161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAWTCCSGBHKBKDBCRWTTTTTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 25 E= 1.5e-057 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.360000 0.120000 0.080000 0.440000 0.000000 0.320000 0.000000 0.680000 0.000000 1.000000 0.000000 0.000000 0.000000 0.720000 0.000000 0.280000 0.040000 0.440000 0.320000 0.200000 0.120000 0.160000 0.640000 0.080000 0.080000 0.240000 0.280000 0.400000 0.280000 0.440000 0.000000 0.280000 0.040000 0.160000 0.480000 0.320000 0.120000 0.320000 0.320000 0.240000 0.120000 0.160000 0.480000 0.240000 0.320000 0.080000 0.320000 0.280000 0.040000 0.280000 0.400000 0.280000 0.080000 0.800000 0.000000 0.120000 0.560000 0.000000 0.360000 0.080000 0.240000 0.160000 0.120000 0.480000 0.280000 0.000000 0.000000 0.720000 0.200000 0.080000 0.000000 0.720000 0.080000 0.080000 0.000000 0.840000 0.120000 0.000000 0.080000 0.800000 0.080000 0.040000 0.000000 0.880000 0.120000 0.000000 0.000000 0.880000 0.040000 0.040000 0.000000 0.920000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAWTCCSGBHKBKDBCRWTTTTTTT MEME-3 regular expression -------------------------------------------------------------------------------- GTTC[GA]A[TA][TC]C[CT][CGT]G[TGC][CAT][GT][CGT][GT][AGT][GCT]C[AG][TA][TA][TA]TTTTT -------------------------------------------------------------------------------- Time 679.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71812-73599 1.57e-01 100 chrI:81532-82377 7.79e-01 100 chrI:138976-139362 2.65e-05 32_[-2(1.02e-08)]_39 chrI:166165-166562 8.19e-09 5_[+3(6.49e-13)]_66 chrI:181122-181509 7.93e-01 100 chrI:182140-183136 9.43e-01 100 chrII:9442-9932 5.18e-07 8_[+3(2.66e-10)]_63 chrII:36228-36650 3.29e-11 8_[-2(2.43e-09)]_27_[+1(1.58e-09)]_\ 11 chrII:44789-45388 9.13e-01 100 chrII:60782-61976 3.76e-01 100 chrII:88930-90390 3.48e-01 100 chrII:165059-165453 3.68e-01 100 chrII:167881-169650 5.72e-01 100 chrII:180463-182120 8.38e-01 100 chrII:197261-197868 1.44e-12 18_[+1(6.03e-11)]_57 chrII:226976-227355 1.96e-08 20_[+3(1.04e-10)]_51 chrII:266188-266713 2.35e-10 15_[+1(1.77e-09)]_60 chrII:326350-327091 1.17e-01 100 chrII:332319-332764 9.82e-01 100 chrII:333314-333833 8.63e-02 100 chrII:347424-348021 6.86e-01 100 chrII:350636-351070 2.80e-10 23_[-2(2.49e-07)]_8_[+1(7.87e-10)]_\ 15 chrII:405692-406206 1.21e-16 15_[+1(1.45e-10)]_20_[-2(3.22e-07)]_\ 11 chrII:415053-416109 7.05e-01 100 chrII:476793-477771 4.86e-01 100 chrII:592296-593402 9.58e-01 100 chrII:595000-595465 1.62e-01 100 chrII:603989-607118 4.32e-01 100 chrII:642819-643247 1.61e-12 33_[-1(7.76e-08)]_8_[+2(1.32e-07)]_\ 5 chrII:644934-645404 1.41e-01 100 chrIII:66-653 2.89e-01 100 chrIII:82384-82647 1.08e-08 6_[-1(5.58e-12)]_69 chrIII:90849-91115 4.31e-08 19_[+3(4.33e-10)]_52 chrIII:123334-123816 1.59e-11 61_[-1(1.20e-13)]_14 chrIII:127534-127932 3.72e-09 32_[-2(5.47e-08)]_10_[+1(1.56e-08)]_\ 4 chrIII:137805-138982 6.10e-01 100 chrIII:142365-142963 3.62e-01 100 chrIII:149725-150169 1.34e-07 22_[-2(8.30e-07)]_8_[+1(2.01e-07)]_\ 16 chrIII:151010-151527 7.54e-13 75_[-1(7.01e-11)] chrIII:163463-163900 2.13e-01 100 chrIII:168161-168569 1.28e-04 28_[+2(1.32e-07)]_43 chrIII:178284-178749 6.95e-01 100 chrIII:227755-228520 5.56e-01 100 chrIII:295295-295954 3.84e-01 100 chrIII:315615-316058 9.42e-01 100 chrIII:316221-316596 3.81e-03 55_[-2(1.57e-06)]_16 chrIV:5-243 6.96e-01 100 chrIV:45185-45877 6.26e-01 100 chrIV:83296-84050 4.51e-01 100 chrIV:116538-117584 4.76e-01 100 chrIV:130420-131024 6.62e-01 100 chrIV:216586-217539 2.46e-01 100 chrIV:221656-222347 4.56e-01 100 chrIV:229456-230807 9.85e-01 100 chrIV:307990-309361 6.06e-01 100 chrIV:321608-321990 5.49e-01 100 chrIV:340644-341819 4.15e-01 100 chrIV:358032-358458 9.29e-01 100 chrIV:359350-359769 3.00e-06 67_[-2(3.20e-09)]_4 chrIV:392544-393867 4.42e-01 100 chrIV:410191-410819 4.05e-01 100 chrIV:411037-411666 6.89e-01 100 chrIV:434100-434885 5.62e-01 100 chrIV:437560-438025 4.52e-05 29_[-2(1.02e-08)]_42 chrIV:488332-489154 9.90e-01 100 chrIV:490595-491543 6.44e-01 100 chrIV:491758-492652 1.38e-01 100 chrIV:519650-519914 6.94e-10 10_[-2(8.31e-11)]_20_[+1(1.66e-06)]_\ 16 chrIV:520756-521161 5.74e-05 63_[-2(1.32e-07)]_8 chrIV:538846-539360 1.05e-01 100 chrIV:555778-556392 6.20e-01 100 chrIV:568710-569388 7.10e-11 15_[+3(2.28e-09)]_56 chrIV:578850-580603 3.93e-01 100 chrIV:600794-602226 1.29e-01 100 chrIV:619679-620192 5.74e-01 100 chrIV:644875-645374 4.14e-05 29_[-3(7.67e-05)]_12_[-3(2.56e-08)]_\ 1 chrIV:667691-668261 9.78e-01 100 chrIV:802582-803028 9.98e-06 18_[+2(1.32e-07)]_53 chrIV:835069-837980 2.52e-01 100 chrIV:884266-885075 6.58e-01 100 chrIV:946121-946630 1.05e-07 40_[+1(9.04e-09)]_35 chrIV:980650-981161 9.67e-01 100 chrIV:992717-993309 7.94e-01 100 chrIV:1013511-1013985 1.00e+00 100 chrIV:1016982-1017489 5.40e-15 31_[-1(5.58e-12)]_44 chrIV:1075104-1075744 5.34e-02 100 chrIV:1095152-1095647 4.59e-10 30_[-1(1.58e-09)]_45 chrIV:1150729-1151164 1.22e-04 16_[+2(1.15e-08)]_55 chrIV:1175744-1176082 6.39e-08 3_[+1(6.79e-09)]_72 chrIV:1201526-1201991 6.12e-05 41_[-2(1.46e-08)]_30 chrIV:1256873-1257293 5.35e-03 17_[+2(2.18e-06)]_54 chrIV:1268502-1269406 1.43e-01 100 chrIV:1300868-1302364 2.03e-01 100 chrIV:1305412-1307720 9.71e-01 100 chrIV:1328822-1330030 7.13e-01 100 chrIV:1351900-1353091 1.04e-17 30_[-1(7.01e-11)]_9_[+2(1.46e-08)]_\ 7 chrIV:1354738-1355977 9.32e-01 100 chrIV:1359420-1359871 9.99e-01 100 chrIV:1401120-1402565 4.28e-01 100 chrIV:1450790-1451207 7.54e-01 100 chrIV:1461479-1461849 2.60e-01 100 chrIV:1489366-1489954 6.85e-01 100 chrIX:68239-68520 6.85e-01 100 chrIX:98544-100214 1.27e-01 100 chrIX:174570-175574 2.77e-18 8_[-2(1.59e-09)]_23_[+3(2.66e-10)]_\ 11 chrIX:183303-183724 3.90e-08 21_[+2(1.10e-11)]_50 chrIX:197366-197828 3.31e-01 100 chrIX:210655-211038 2.63e-01 100 chrIX:248480-249018 6.36e-01 100 chrIX:253857-254594 1.33e-01 100 chrIX:255101-255855 8.80e-01 100 chrIX:257368-257726 8.41e-01 100 chrIX:266289-267743 7.45e-02 100 chrIX:300078-300476 2.47e-12 10_[-1(7.01e-11)]_9_[+2(1.46e-08)]_\ 27 chrIX:315706-317934 2.18e-01 100 chrIX:324152-324394 8.29e-06 71_[-3(9.86e-10)] chrIX:325740-326170 7.62e-01 100 chrIX:336081-336636 3.21e-11 32_[-3(9.86e-10)]_39 chrIX:370238-371263 8.24e-01 100 chrIX:391098-392149 3.81e-01 100 chrIX:427474-427803 7.36e-01 100 chrV:53464-54180 4.51e-01 100 chrV:61096-62160 2.06e-01 100 chrV:67300-69322 8.25e-01 100 chrV:77562-79474 4.81e-01 100 chrV:85102-87820 8.39e-01 100 chrV:99910-100318 1.42e-03 68_[-2(8.30e-07)]_3 chrV:117596-118328 4.94e-01 100 chrV:130827-131378 1.78e-12 21_[-3(5.23e-10)]_50 chrV:135101-136058 8.73e-01 100 chrV:138444-139771 1.14e-02 100 chrV:140454-140927 9.56e-01 100 chrV:176896-177457 1.18e-12 9_[+1(5.58e-12)]_66 chrV:207352-207542 2.22e-05 10_[+3(3.13e-09)]_61 chrV:249796-250507 2.30e-02 32_[-2(9.91e-05)]_39 chrV:270089-271120 9.32e-01 100 chrV:288142-288746 7.22e-09 40_[-3(2.05e-11)]_31 chrV:305813-306420 3.73e-01 100 chrV:311691-312287 8.34e-01 100 chrV:354723-355364 8.95e-01 100 chrV:362049-363257 8.27e-01 100 chrV:395611-395886 7.10e-01 100 chrV:396162-396631 4.09e-01 100 chrV:422797-423586 6.93e-02 100 chrV:431028-431933 6.80e-01 100 chrV:434374-434977 7.44e-01 100 chrV:435559-436014 5.57e-18 25_[-1(7.01e-11)]_9_[+2(1.46e-08)]_\ 12 chrV:438505-438955 7.44e-10 19_[-2(4.93e-08)]_10_[+1(2.20e-09)]_\ 17 chrV:441818-442695 9.77e-01 100 chrV:443085-443365 5.93e-23 18_[-3(1.59e-11)]_24_[+2(1.10e-11)] chrV:469265-469889 9.40e-01 100 chrV:487081-487591 4.57e-10 54_[-1(5.58e-12)]_21 chrV:492212-492571 1.99e-13 2_[-3(2.01e-08)]_23_[+2(1.10e-07)]_\ 17 chrV:550959-551593 3.43e-16 50_[-3(4.13e-12)]_21 chrVI:64259-65406 5.70e-01 100 chrVI:95472-95915 1.02e-01 100 chrVI:101157-102195 8.70e-01 100 chrVI:137277-137707 3.75e-10 35_[-3(4.57e-09)]_36 chrVI:157838-158200 1.74e-05 9_[+2(2.43e-09)]_62 chrVI:162021-162385 3.35e-01 100 chrVI:167229-167653 2.27e-03 45_[-2(8.94e-07)]_26 chrVI:180655-181262 3.00e-12 57_[-3(1.97e-10)]_14 chrVI:183409-183987 4.91e-02 52_[+3(7.27e-05)]_19 chrVI:191187-191782 1.31e-05 70_[-3(1.79e-09)]_1 chrVI:210470-211151 9.35e-01 100 chrVI:220504-223039 9.91e-01 100 chrVI:223237-224149 3.42e-01 100 chrVI:226458-227035 2.47e-12 1_[-1(7.01e-11)]_9_[+2(1.46e-08)]_\ 36 chrVII:110164-110788 5.34e-01 100 chrVII:115320-115717 2.87e-05 19_[-2(3.20e-09)]_52 chrVII:122050-122489 1.03e-04 49_[-2(1.46e-08)]_22 chrVII:148193-149525 8.61e-01 100 chrVII:185507-185922 1.20e-12 59_[-1(7.01e-11)]_16 chrVII:205328-205744 1.26e-05 34_[-2(1.18e-09)]_37 chrVII:254117-254691 3.17e-01 100 chrVII:277001-277407 4.73e-01 100 chrVII:277601-278664 4.18e-01 100 chrVII:287163-287682 1.53e-03 54_[+2(2.18e-06)]_17 chrVII:310395-312057 9.59e-01 100 chrVII:319226-320118 1.20e-01 100 chrVII:328418-329324 9.53e-01 100 chrVII:364928-366680 9.37e-01 100 chrVII:370772-371573 8.79e-02 100 chrVII:401429-401620 2.43e-13 62_[-1(5.58e-12)]_13 chrVII:405458-405843 9.45e-01 100 chrVII:411753-412599 7.22e-01 100 chrVII:422878-423378 1.26e-05 13_[-2(1.18e-09)]_58 chrVII:437448-438907 7.19e-01 100 chrVII:440524-441007 1.65e-11 10_[-1(1.58e-09)]_28_[+2(2.43e-09)]_\ 8 chrVII:479189-479368 3.20e-01 100 chrVII:479561-482661 5.81e-01 100 chrVII:531370-531929 1.07e-14 10_[-2(3.22e-07)]_22_[+3(2.90e-09)]_\ 10 chrVII:533637-535199 8.90e-01 100 chrVII:541707-542381 4.19e-01 100 chrVII:544399-544859 8.05e-09 7_[-1(4.58e-09)]_8_[+2(3.22e-07)]_\ 31 chrVII:555136-555832 2.72e-01 100 chrVII:648800-649359 6.28e-01 100 chrVII:661525-661998 5.51e-09 37_[-2(2.31e-08)]_8_[+1(1.66e-07)]_\ 1 chrVII:700385-701218 6.19e-01 100 chrVII:706915-707187 9.25e-01 100 chrVII:726362-728045 2.82e-01 100 chrVII:730950-732592 8.29e-01 100 chrVII:736185-736534 2.87e-11 30_[-2(3.80e-07)]_8_[+1(1.45e-10)]_\ 8 chrVII:738909-739640 4.89e-01 100 chrVII:740396-741127 7.73e-01 100 chrVII:774134-774759 1.47e-08 4_[+3(7.22e-12)]_67 chrVII:779429-779897 2.07e-12 2_[-2(4.44e-08)]_8_[+1(3.03e-09)]_\ 36 chrVII:788104-788779 3.77e-01 100 chrVII:794261-794585 6.39e-06 43_[-2(1.02e-09)]_28 chrVII:823337-823721 6.42e-14 2_[-2(4.93e-08)]_10_[+1(2.20e-09)]_\ 34 chrVII:828422-828976 8.31e-07 65_[-3(1.16e-10)]_6 chrVII:845450-846256 3.92e-01 100 chrVII:856566-857710 9.79e-01 100 chrVII:876157-878142 4.81e-01 100 chrVII:878556-879057 1.53e-03 30_[+2(2.18e-06)]_41 chrVII:882764-883846 9.72e-02 100 chrVII:921094-921788 4.34e-02 100 chrVII:930620-931608 9.88e-01 100 chrVII:1000357-1000608 6.66e-01 100 chrVII:1004023-1004395 9.15e-05 56_[-2(2.31e-08)]_15 chrVII:1057757-1060203 8.97e-01 100 chrVIII:34565-35105 2.05e-01 100 chrVIII:35277-36166 5.60e-01 100 chrVIII:62604-62917 4.87e-01 100 chrVIII:74788-75885 5.05e-01 100 chrVIII:103664-105206 5.59e-01 100 chrVIII:115910-116396 1.31e-11 13_[-1(1.77e-09)]_9_[+2(1.59e-09)]_\ 24 chrVIII:125901-126331 8.27e-01 100 chrVIII:132418-132597 9.48e-01 100 chrVIII:132780-133120 9.91e-01 100 chrVIII:134136-134733 7.14e-01 100 chrVIII:145766-146470 9.76e-01 100 chrVIII:148755-149272 6.49e-01 100 chrVIII:173417-176779 6.62e-01 100 chrVIII:237760-238137 1.64e-05 12_[+2(2.43e-09)]_59 chrVIII:266873-267224 5.70e-02 100 chrVIII:296834-297247 6.16e-01 100 chrVIII:358321-358777 1.53e-05 41_[+2(2.43e-09)]_30 chrVIII:381516-382349 8.41e-01 100 chrVIII:382872-383365 1.51e-01 100 chrVIII:388708-389007 9.45e-01 100 chrVIII:451291-453026 3.63e-01 100 chrVIII:466830-467165 2.61e-05 42_[-2(2.31e-08)]_29 chrVIII:475510-475914 1.11e-08 53_[-1(1.41e-09)]_22 chrVIII:505775-506218 7.50e-01 100 chrVIII:555087-555448 5.48e-01 100 chrVIII:555752-556923 5.07e-02 100 chrVIII:562331-562595 9.74e-01 100 chrX:59016-59414 8.42e-01 100 chrX:73338-74626 4.63e-01 100 chrX:74883-75750 5.32e-01 100 chrX:89499-89785 7.14e-01 100 chrX:89998-90462 5.80e-01 100 chrX:115764-116271 2.44e-01 100 chrX:120474-121867 3.60e-01 100 chrX:139444-140185 9.60e-01 100 chrX:156059-157891 9.07e-01 100 chrX:196362-197449 7.79e-01 100 chrX:204545-205072 2.45e-11 27_[+3(9.86e-10)]_44 chrX:227737-228569 2.24e-01 100 chrX:233516-234143 5.06e-01 100 chrX:353999-354460 1.34e-03 64_[-2(8.94e-07)]_7 chrX:355177-355766 3.24e-15 3_[+3(8.26e-10)]_2_[-2(3.22e-07)]_8_\ [+1(4.58e-09)]_4 chrX:365919-367369 6.91e-01 100 chrX:374176-374793 6.80e-10 32_[+2(3.22e-07)]_2_[-3(8.26e-10)]_\ 8 chrX:378224-378652 7.40e-10 10_[+1(2.20e-09)]_65 chrX:390848-392121 8.56e-01 100 chrX:396582-396950 7.62e-18 1_[-3(6.29e-12)]_21_[+2(2.71e-07)]_\ 20 chrX:414778-415291 3.59e-12 19_[+1(7.01e-11)]_56 chrX:415720-416236 3.57e-05 12_[-1(6.22e-08)]_63 chrX:422667-423365 1.34e-09 8_[+1(6.79e-09)]_24_[-1(1.54e-05)]_\ 18 chrX:424249-424713 6.94e-10 10_[-1(1.66e-06)]_20_[+2(8.31e-11)]_\ 16 chrX:517658-518170 6.85e-01 100 chrX:523912-524382 6.58e-01 100 chrX:531566-532330 2.91e-01 100 chrX:538014-538875 3.14e-01 100 chrX:540860-542439 9.43e-01 100 chrX:542791-543261 2.38e-03 39_[+2(8.94e-07)]_32 chrX:545380-546253 4.43e-01 100 chrX:569659-570487 4.64e-01 100 chrX:607881-609413 3.61e-01 100 chrX:617698-618231 1.54e-08 4_[-2(2.86e-10)]_67 chrX:623570-624536 1.30e-01 100 chrX:651020-651634 9.55e-01 100 chrX:651961-652597 4.26e-01 100 chrX:663800-664842 7.01e-01 100 chrX:690598-691212 3.40e-02 100 chrX:703244-703652 2.61e-01 100 chrX:745038-745749 7.61e-01 100 chrXI:2-187 5.05e-03 9_[+2(1.81e-05)]_62 chrXI:772-1044 5.80e-01 100 chrXI:46711-47002 8.89e-01 100 chrXI:67799-68304 1.72e-01 100 chrXI:74405-74887 2.84e-09 27_[-2(5.47e-08)]_10_[+1(1.56e-08)]_\ 9 chrXI:83988-84467 5.30e-08 30_[-2(8.31e-11)]_41 chrXI:99726-99955 1.47e-01 100 chrXI:108733-109675 6.08e-01 100 chrXI:140787-141341 1.08e-08 13_[-1(5.58e-12)]_62 chrXI:143027-143350 7.55e-01 100 chrXI:158057-159309 2.57e-01 100 chrXI:162314-162745 2.87e-11 17_[-1(1.45e-10)]_8_[+2(3.80e-07)]_\ 21 chrXI:202432-203282 6.27e-02 100 chrXI:219722-220116 4.21e-13 25_[-2(1.10e-11)]_9_[+1(2.73e-09)]_\ 12 chrXI:259157-259853 3.10e-01 100 chrXI:283437-284434 8.53e-01 100 chrXI:302691-303267 1.01e-04 59_[+1(6.22e-08)]_16 chrXI:307982-308643 4.43e-01 100 chrXI:313227-314034 4.25e-01 100 chrXI:326444-327526 3.98e-03 28_[+2(1.57e-06)]_43 chrXI:379680-379896 7.87e-01 100 chrXI:382167-382472 3.71e-01 100 chrXI:382765-384301 2.81e-01 100 chrXI:431370-432312 7.83e-02 100 chrXI:457985-459336 1.09e-06 39_[+3(9.30e-09)]_32 chrXI:490772-491267 1.21e-09 50_[+3(4.57e-09)]_21 chrXI:512619-513594 4.01e-01 100 chrXI:517790-518070 8.21e-01 100 chrXI:525420-526614 2.34e-01 100 chrXI:578735-579498 1.17e-01 100 chrXI:618747-619293 2.59e-01 100 chrXI:666613-666800 5.70e-01 100 chrXII:47683-49497 7.59e-01 100 chrXII:92327-92828 2.65e-05 20_[-2(1.02e-08)]_51 chrXII:126116-126589 3.18e-01 100 chrXII:167772-168273 1.31e-04 24_[+2(1.02e-08)]_47 chrXII:198682-200059 5.08e-01 100 chrXII:201709-202677 5.49e-01 100 chrXII:214665-215071 1.90e-14 56_[-3(1.98e-12)]_15 chrXII:231778-234170 4.76e-02 100 chrXII:241635-243392 8.61e-01 100 chrXII:261337-263343 3.36e-01 100 chrXII:282715-284633 9.08e-01 100 chrXII:366020-366559 2.18e-02 42_[-1(5.34e-05)]_33 chrXII:369666-370257 5.22e-01 100 chrXII:370530-371340 9.10e-01 100 chrXII:373992-374644 8.27e-01 100 chrXII:424178-424481 9.58e-01 100 chrXII:426898-427427 8.51e-15 19_[-2(3.22e-07)]_22_[+3(2.28e-09)]_\ 1 chrXII:448538-449034 8.18e-01 100 chrXII:459588-460729 2.96e-01 100 chrXII:498336-499720 2.16e-01 100 chrXII:515285-516500 6.22e-01 100 chrXII:522263-522462 9.01e-01 100 chrXII:592252-593018 3.06e-06 5_[+2(2.86e-10)]_66 chrXII:605127-605628 5.55e-01 100 chrXII:628145-628640 9.01e-06 40_[-2(1.18e-09)]_31 chrXII:628842-629105 8.89e-01 100 chrXII:636750-639905 9.77e-02 100 chrXII:656821-657213 8.71e-08 10_[+2(1.10e-11)]_61 chrXII:673595-674257 6.22e-01 100 chrXII:713133-713678 5.59e-01 100 chrXII:728288-728577 2.16e-01 100 chrXII:730906-732374 9.89e-01 100 chrXII:734598-734982 5.41e-08 61_[-2(1.10e-11)]_10 chrXII:781100-781891 2.69e-01 100 chrXII:783867-784522 4.31e-01 100 chrXII:793780-794103 8.05e-09 26_[-2(3.22e-07)]_8_[+1(4.58e-09)]_\ 12 chrXII:796281-797716 3.36e-01 100 chrXII:805883-806821 7.55e-01 100 chrXII:818499-820376 5.46e-01 100 chrXII:838075-839287 5.33e-02 100 chrXII:873971-877092 6.11e-01 100 chrXII:897522-899748 1.90e-01 100 chrXII:903072-904454 7.18e-01 100 chrXII:921709-923793 6.43e-01 100 chrXII:932071-932543 6.26e-01 100 chrXII:951065-953173 2.48e-01 100 chrXII:953335-953996 7.27e-01 100 chrXII:962842-963276 7.36e-08 17_[+2(8.31e-11)]_54 chrXII:975791-976181 2.12e-10 38_[-3(2.47e-09)]_33 chrXII:1018118-1019661 5.97e-01 100 chrXII:1028205-1028624 9.54e-01 100 chrXII:1051959-1052229 8.53e-23 18_[-3(2.32e-11)]_24_[+2(1.10e-11)] chrXIII:5436-5665 9.35e-01 100 chrXIII:91378-92292 8.37e-01 100 chrXIII:131651-132091 2.87e-11 13_[-1(1.45e-10)]_8_[+2(3.80e-07)]_\ 25 chrXIII:145917-146289 6.92e-01 100 chrXIII:162339-162703 7.55e-01 100 chrXIII:168225-169034 7.71e-01 100 chrXIII:195957-196306 2.65e-05 60_[+2(1.02e-08)]_11 chrXIII:224730-226572 9.69e-02 48_[-2(6.97e-05)]_23 chrXIII:258848-259381 8.57e-01 100 chrXIII:290589-291170 3.17e-10 8_[+1(5.58e-12)]_67 chrXIII:296726-298082 6.12e-01 100 chrXIII:298277-298874 9.67e-01 100 chrXIII:302860-303129 4.35e-02 71_[+1(5.87e-05)]_4 chrXIII:320932-321329 2.39e-08 58_[-3(1.08e-11)]_13 chrXIII:352070-353284 8.71e-01 100 chrXIII:362934-363299 4.12e-07 48_[+3(1.05e-07)]_23 chrXIII:363491-363780 1.23e-01 100 chrXIII:372176-372666 3.24e-07 32_[-1(9.33e-05)]_8_[-3(9.03e-10)]_\ 6 chrXIII:379077-379620 1.01e-04 14_[-1(6.22e-08)]_61 chrXIII:420362-420837 4.85e-11 48_[-1(2.20e-09)]_27 chrXIII:463322-463858 3.83e-15 13_[-2(3.22e-07)]_22_[+3(9.86e-10)]_\ 7 chrXIII:480405-480825 4.53e-11 65_[-1(7.01e-11)]_10 chrXIII:498950-500696 3.32e-02 100 chrXIII:504901-505213 1.09e-01 100 chrXIII:550028-551844 3.78e-01 100 chrXIII:572696-573279 9.31e-01 100 chrXIII:586206-586911 6.25e-01 100 chrXIII:671968-674796 5.50e-02 50_[-2(5.93e-05)]_21 chrXIII:732021-732706 2.02e-01 100 chrXIII:747436-748149 8.79e-01 100 chrXIII:753219-755275 9.79e-01 100 chrXIII:768191-768454 6.93e-01 100 chrXIII:808109-808542 1.56e-04 13_[+2(1.32e-07)]_58 chrXIII:837750-838260 5.24e-08 26_[+1(9.04e-09)]_49 chrXIII:873448-874025 8.85e-01 100 chrXIV:6615-6993 3.81e-03 17_[+2(1.57e-06)]_54 chrXIV:62004-62600 9.93e-01 100 chrXIV:62819-64467 1.64e-01 100 chrXIV:96061-96472 4.15e-17 16_[-3(9.37e-11)]_22_[+2(4.44e-08)]_\ 4 chrXIV:102577-103201 7.68e-01 100 chrXIV:104583-105058 1.71e-11 34_[-2(1.59e-09)]_9_[+1(1.77e-09)]_\ 3 chrXIV:241386-242187 1.42e-01 100 chrXIV:302683-303571 5.94e-01 100 chrXIV:330767-332392 4.01e-01 100 chrXIV:374632-375110 2.94e-05 47_[-2(2.11e-09)]_24 chrXIV:442754-443241 1.84e-05 58_[-2(1.18e-09)]_13 chrXIV:443411-445236 1.94e-01 100 chrXIV:495179-495945 1.68e-01 100 chrXIV:518682-519151 3.75e-01 100 chrXIV:525069-525301 8.69e-01 100 chrXIV:546533-547665 2.65e-05 44_[-2(1.02e-08)]_27 chrXIV:560174-560993 7.00e-01 100 chrXIV:568052-568570 9.10e-01 100 chrXIV:569652-570096 3.53e-15 34_[-3(4.76e-11)]_37 chrXIV:576902-577598 5.89e-01 100 chrXIV:602075-602551 2.21e-07 48_[-2(1.10e-11)]_23 chrXIV:631666-632120 9.63e-14 12_[-1(1.20e-13)]_8_[+2(6.13e-07)]_\ 26 chrXIV:632418-633119 7.27e-01 100 chrXIV:657532-661270 5.66e-01 100 chrXIV:725954-726397 1.15e-16 [-3(2.66e-10)]_34_[+2(8.31e-11)]_8 chrXIV:783684-784322 4.83e-01 100 chrXV:28756-30893 7.16e-01 100 chrXV:79729-80153 8.98e-01 100 chrXV:92909-94799 1.92e-01 100 chrXV:109561-110042 5.65e-01 100 chrXV:110853-111812 4.74e-01 100 chrXV:113576-113884 6.80e-01 100 chrXV:159169-160146 3.45e-02 100 chrXV:160326-160662 9.25e-01 100 chrXV:161115-161747 5.60e-01 100 chrXV:168078-168352 5.65e-01 100 chrXV:216278-216702 3.64e-01 100 chrXV:226447-226902 9.42e-04 28_[+2(2.71e-07)]_43 chrXV:228119-228750 4.31e-01 100 chrXV:252900-254662 1.56e-01 100 chrXV:274454-275005 1.90e-02 100 chrXV:281985-282533 3.39e-08 4_[+3(6.29e-12)]_67 chrXV:288032-288456 4.61e-08 51_[+1(9.04e-09)]_24 chrXV:300910-301891 9.93e-01 100 chrXV:340156-340575 6.45e-04 27_[+2(1.10e-07)]_44 chrXV:353912-354328 1.35e-05 14_[+2(1.59e-09)]_57 chrXV:407507-408215 3.14e-02 100 chrXV:438467-439273 3.62e-02 100 chrXV:444618-446229 8.32e-01 100 chrXV:464288-464802 1.83e-10 21_[+1(6.97e-10)]_1_[+3(8.09e-05)]_\ 24 chrXV:487432-487804 6.08e-01 100 chrXV:504930-505503 1.82e-01 100 chrXV:571705-572146 4.66e-01 100 chrXV:572330-572505 6.47e-01 100 chrXV:594302-594639 9.43e-01 100 chrXV:639094-639498 6.12e-01 100 chrXV:663648-664072 7.44e-10 11_[-1(2.20e-09)]_10_[+2(4.93e-08)]_\ 25 chrXV:678623-679184 9.26e-01 100 chrXV:710116-710360 6.34e-10 12_[-2(8.30e-07)]_8_[+1(2.01e-07)]_\ 26 chrXV:778602-780969 8.01e-01 100 chrXV:854014-854761 1.16e-01 100 chrXV:866311-868090 9.32e-01 100 chrXV:901403-901637 6.44e-01 100 chrXV:968117-968660 3.01e-01 100 chrXV:976376-976638 2.19e-12 15_[+3(3.77e-11)]_56 chrXV:978779-979159 5.56e-01 100 chrXV:980155-980953 9.51e-01 100 chrXV:1003987-1004366 5.10e-01 100 chrXV:1025690-1026065 7.20e-01 100 chrXV:1027919-1029206 5.21e-01 100 chrXVI:55849-56432 4.27e-06 70_[-3(5.30e-09)]_1 chrXVI:75367-76903 2.41e-03 69_[-2(7.61e-06)]_2 chrXVI:188294-188927 1.20e-02 55_[+1(2.40e-05)]_20 chrXVI:210007-210447 1.84e-12 24_[-1(5.58e-12)]_51 chrXVI:280009-280242 7.91e-01 100 chrXVI:280624-281377 8.60e-02 100 chrXVI:281563-282269 1.33e-01 100 chrXVI:302659-302971 9.80e-01 100 chrXVI:303149-304040 3.73e-01 100 chrXVI:338472-339213 5.57e-06 65_[-1(2.01e-07)]_10 chrXVI:378598-379000 6.04e-02 100 chrXVI:404491-406598 1.67e-01 100 chrXVI:432553-434143 5.05e-01 100 chrXVI:435673-436169 1.45e-14 13_[-3(5.74e-10)]_22_[+2(1.32e-07)]_\ 7 chrXVI:518774-520544 1.53e-01 100 chrXVI:560032-560515 2.40e-05 37_[+2(2.43e-09)]_34 chrXVI:572169-572590 6.31e-01 100 chrXVI:581868-582490 9.45e-01 100 chrXVI:622358-622838 1.65e-11 1_[-1(1.58e-09)]_28_[+2(2.43e-09)]_\ 17 chrXVI:642340-643330 4.44e-01 100 chrXVI:689372-689882 1.05e-07 48_[+3(5.23e-10)]_23 chrXVI:699513-700690 8.80e-01 100 chrXVI:731897-732310 8.36e-01 100 chrXVI:744081-744599 7.47e-11 44_[+3(2.68e-09)]_27 chrXVI:768706-769512 3.72e-02 100 chrXVI:775628-776085 9.33e-04 1_[+2(1.32e-07)]_70 chrXVI:785565-786782 1.50e-01 100 chrXVI:794491-796694 5.66e-01 100 chrXVI:810573-811793 8.10e-01 100 chrXVI:819347-820203 5.92e-01 100 chrXVI:856724-857168 2.40e-20 5_[-2(1.10e-11)]_23_[+3(1.77e-10)]_\ 14 chrXVI:860198-860717 1.14e-12 21_[+3(7.51e-11)]_50 chrXVI:880159-880580 3.25e-07 21_[+2(1.10e-11)]_50 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************