Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.020812 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.060944 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.07838 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.013128 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.065855 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background Finished invoke: name: bg status: 0 time: 0.017568 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 999.46577 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 36.456793 Invoking: centrimo -seqlen 1190 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.142672 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.182854 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background -primary TCCSSGGTTCGATYCCSSKHBGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.570458 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background -primary GSKYBYDTGGYBYAGTBGKTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.481494 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background -primary AAWRAAAAAAAAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.728417 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background -primary TACCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.784721 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background -primary AYATATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.571302 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background -primary GYGGAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.330331 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background -primary CTTGGM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.641912 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background --motif TCCSSGGTTCGATYCCSSKHBGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa Finished invoke: name: fimo1 status: 0 time: 0.460751 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background --motif GSKYBYDTGGYBYAGTBGKTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa Finished invoke: name: fimo2 status: 0 time: 0.454115 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background --motif AAWRAAAAAAAAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa Finished invoke: name: fimo3 status: 0 time: 0.437175 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background --motif TACCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa Finished invoke: name: fimo4 status: 0 time: 0.308314 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background --motif AYATATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa Finished invoke: name: fimo5 status: 0 time: 0.298976 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background --motif GYGGAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa Finished invoke: name: fimo6 status: 0 time: 0.316912 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/background --motif CTTGGM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/RM11-1A--SFL1.fa Finished invoke: name: fimo7 status: 0 time: 0.306466 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--SFL1/summary.tsv Finished invoke: name: summary status: 0 time: 0.146154 Done