******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--RPD3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:373935-375770 1.0000 100 chrVIII:395470-395796 1.0000 100 chrXV:228085-228543 1.0000 100 chrVII:156179-157638 1.0000 100 chrXI:513083-513581 1.0000 100 chrI:141502-141979 1.0000 100 chrIV:1239349-1240341 1.0000 100 chrXVI:828984-829353 1.0000 100 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chrIV:1095000-1095611 1.0000 100 chrXIII:609169-609749 1.0000 100 chrIII:151144-151491 1.0000 100 chrII:299662-300258 1.0000 100 chrVIII:411010-411678 1.0000 100 chrIV:1150729-1151191 1.0000 100 chrII:254629-255890 1.0000 100 chrVII:702866-704435 1.0000 100 chrXI:427425-427608 1.0000 100 chrXV:594317-594682 1.0000 100 chrIII:287797-288349 1.0000 100 chrXV:472685-473555 1.0000 100 chrX:663355-663455 1.0000 100 chrX:517658-517758 1.0000 100 chrXV:487451-487748 1.0000 100 chrVII:959821-961593 1.0000 100 chrVII:31151-31812 1.0000 100 chrV:363615-364489 1.0000 100 chrVII:345874-346714 1.0000 100 chrVI:180615-181214 1.0000 100 chrX:159596-159696 1.0000 100 chrXIII:510946-512328 1.0000 100 chrXIII:412536-412700 1.0000 100 chrXI:333742-335021 1.0000 100 chrVII:774141-774598 1.0000 100 chrII:62818-63463 1.0000 100 chrX:683678-683778 1.0000 100 chrVII:968871-969415 1.0000 100 chrVI:157906-158314 1.0000 100 chrIV:443187-445627 1.0000 100 chrXIV:24044-27591 1.0000 100 chrXII:783934-784509 1.0000 100 chrII:477165-477810 1.0000 100 chrXIV:48220-48801 1.0000 100 chrXIV:187061-187564 1.0000 100 chrXV:903891-906391 1.0000 100 chrI:65806-67889 1.0000 100 chrII:88903-89496 1.0000 100 chrIX:307685-308459 1.0000 100 chrX:531616-531716 1.0000 100 chrXIII:507159-509485 1.0000 100 chrXV:479447-479760 1.0000 100 chrVII:56383-58892 1.0000 100 chrXV:712483-713081 1.0000 100 chrXVI:701864-702324 1.0000 100 chrVIII:281487-283186 1.0000 100 chrXVI:878741-880567 1.0000 100 chrXII:737775-738496 1.0000 100 chrVII:23844-25422 1.0000 100 chrXVI:581849-582451 1.0000 100 chrII:391130-392303 1.0000 100 chrXI:430653-431240 1.0000 100 chrXIII:861157-861686 1.0000 100 chrVIII:451189-453013 1.0000 100 chrXII:1028818-1030336 1.0000 100 chrV:441846-442654 1.0000 100 chrXIV:302587-304067 1.0000 100 chrXIV:102611-103423 1.0000 100 chrV:431032-431937 1.0000 100 chrIX:77519-77780 1.0000 100 chrIII:27951-31222 1.0000 100 chrXIV:510510-512297 1.0000 100 chrXIII:549848-551270 1.0000 100 chrIV:1075342-1075757 1.0000 100 chrXIII:170184-171364 1.0000 100 chrXII:672040-672836 1.0000 100 chrIV:555366-556657 1.0000 100 chrXII:253740-255339 1.0000 100 chrVI:101184-101671 1.0000 100 chrXV:1016165-1017561 1.0000 100 chrXV:80311-81493 1.0000 100 chrVII:1056898-1058756 1.0000 100 chrVII:541748-542157 1.0000 100 chrIV:1449869-1451837 1.0000 100 chrVII:930563-931170 1.0000 100 chrX:520211-520311 1.0000 100 chrIV:519680-520240 1.0000 100 chrIV:980759-981131 1.0000 100 chrXVI:241978-243303 1.0000 100 chrXIII:670915-674837 1.0000 100 chrXVI:247041-248785 1.0000 100 chrVII:319260-320111 1.0000 100 chrX:115862-115962 1.0000 100 chrVII:479099-482992 1.0000 100 chrII:347428-347919 1.0000 100 chrXV:409081-409963 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--RPD3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--RPD3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--RPD3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--RPD3/background): A 0.307 C 0.193 G 0.193 T 0.307 ******************************************************************************** ******************************************************************************** MOTIF RGRTYVSSGGTTCRATTCCSSBHBGGGGC MEME-1 width = 29 sites = 48 llr = 906 E-value = 1.3e-146 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGRTYVSSGGTTCRATTCCSSBHBGGGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5232:2:12::1:4a1::::1:3:2:212 pos.-specific C 21126552::::9::13a75334312117 probability G 3751:3448a:::6:2:::355:45665: matrix T ::154:12::a91::57:32:2432212: bits 2.4 * 2.1 * * 1.9 * * * 1.7 ** * * * Relative 1.4 ***** * * Entropy 1.2 * ******* ** (27.2 bits) 0.9 * * ******* *** * * 0.7 * * * ******* *** * ** * 0.5 *** *** ******* ************* 0.2 ***************************** 0.0 ----------------------------- Multilevel AGGTCCCGGGTTCGATTCCCGGTGGGGGC consensus GAAATGGC A C TGCCCTA A A sequence C C A TACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTYVSSGGTTCRATTCCSSBHBGGGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrX:531616-531716 + 1 1.89e-13 . GGGCCCCCGGTTCGATTCCGGGCTTGCGC AGTTTCTTTT chrXVI:860206-860665 + 35 1.89e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AGATTTTATT chrX:396579-396679 - 25 1.89e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC ATTTCTTTTT chrIV:83370-83791 + 59 1.89e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AAGTTTAATT chrXVI:581849-582451 + 5 5.71e-12 CATA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TTTCTTTTTT chrIII:151144-151491 - 18 5.71e-12 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TTTCTTTTTT chrIX:300004-300465 - 45 5.71e-12 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TATCTTTTTA chrVI:226411-227050 - 9 5.71e-12 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TTATCTCT chrVIII:475510-475863 - 71 1.76e-11 A AGGTCCCGAGTTCGATCCTCGGTTGGAAC ATTTTAACAT chrIX:197266-198033 + 35 3.43e-11 TCTCACCGTG GAGACCGGGGTTCGACTCCCCGCTTCGGA GTTATTTTTT chrX:538487-538587 + 29 4.43e-11 CCTAAGGAGA AGACTGCGGGTTCGAGTCCCGTACGGAAC GTTGATTATT chrX:233737-233837 + 13 5.03e-11 ACGAACCAGA AGATTCCAGGTTCGAGTCCTGGCGGGGAA GAATATTCTT chrX:204549-204649 + 32 5.71e-11 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTT chrXIII:463372-463884 + 18 5.71e-11 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTA chrXII:426918-427417 + 57 5.71e-11 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GAATTTTTTT chrX:355206-355306 + 69 5.71e-11 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GAT chrII:405698-406347 + 30 5.71e-11 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTG chrXI:513083-513581 - 51 5.71e-11 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTAT chrVIII:466843-467302 + 10 1.51e-10 GTAATGCAA AGGTCGCTAGTTCAATTCTGGCAGGTGGC ATTATACCGG chrXI:490783-491322 + 9 1.90e-10 GAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAA GAATTTTTTT chrV:492205-492547 - 27 1.90e-10 ACGAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAA GGATTATTTT chrIV:488415-489162 - 60 2.39e-10 TACACGGCGA AGATCCCGAGTTCGAACCTCGGTTGGATC AGAATCTTTT chrVI:101184-101671 + 72 3.74e-10 AGCATGCGAG AGGCCCTGGGTTCAATTCCCAGCTCGCCC chrII:197279-197801 + 48 4.17e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACC ATTTTTTTGC chrIV:667766-668208 - 71 4.17e-10 G GGATCAGCGGTTCGATCCCGCTAGAGACC ATTTTTATTT chrV:487083-487587 - 47 6.40e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTATTCGTTA chrIV:802570-802984 - 5 1.31e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACC TCTT chrXIII:572726-573120 - 11 2.14e-09 CATAATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGC ACATTTTTTT chrXIII:362963-363297 + 26 2.84e-09 TGTGGCCGAT GAAACCCTGGTTCGATTCTAGGAGATGGC ATTTTCTTTT chrV:434384-434745 - 28 2.84e-09 TGTGGCCGAT GAAACCCTGGTTCGATTCTAGGAGATGGC ATTTTCTTTT chrX:415725-415825 - 11 3.74e-09 TGCAATCGAA GGGTTGCAGGTTCAATTCCTGTCCGTTTC AATTTATTTT chrXIII:321012-321267 - 59 5.86e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCC ATTTTTTATT chrXVI:856768-857156 + 33 5.86e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCC ATTTTAATTT chrXIV:632448-632882 + 28 6.39e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTTTC chrVII:1004080-1004413 + 62 6.39e-09 TGTAATGCAA AGGTCGTTAGTTCAATTCTGACAGGTGGC AGTTTCCTTT chrVII:730975-731402 + 43 6.39e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTGCT chrVII:823364-823719 + 35 1.26e-08 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTGAA chrV:288098-288838 - 26 2.56e-08 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTGCTGGTGTC GTTTTTTTTA chrXVI:689371-689831 + 66 2.56e-08 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTGCTGGTGTC GTATTA chrX:374175-374275 - 67 2.56e-08 TCAGA AGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrXII:167755-168222 - 7 2.98e-08 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTATT chrXV:274503-275005 + 40 3.21e-08 TTGGGTTTTA CCTGCGCAGGTTCGAATCCTGTCTGTGAC GCATTTCTTT chrXIV:104574-105127 + 48 3.45e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGC ATATTATTTT chrXIV:546464-547703 + 69 4.30e-08 TCGGGCGTGT GGTCTAGTGGTATGATTCTCGCTTTGGGC GAC chrXIII:195966-196282 - 60 4.30e-08 AAGGGCGTGT GGTCTAGTGGTATGATTCTCGCTTTGGGC GACTTCCTGA chrXIII:549848-551270 - 27 4.62e-08 GCTGAAGTTA AGGCCGCTGGTTTGACTGCTGCTTACGCC AGAACCATTG chrXIII:837766-838227 + 41 5.72e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTTT chrXIV:631721-632101 - 20 3.94e-07 CCGGGCGTGT GGTCTAGAGGTATGATTCTCGCTTAGGGT GCGGGAGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTYVSSGGTTCRATTCCSSBHBGGGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:531616-531716 1.9e-13 [+1]_71 chrXVI:860206-860665 1.9e-13 34_[+1]_37 chrX:396579-396679 1.9e-13 24_[-1]_47 chrIV:83370-83791 1.9e-13 58_[+1]_13 chrXVI:581849-582451 5.7e-12 4_[+1]_67 chrIII:151144-151491 5.7e-12 17_[-1]_54 chrIX:300004-300465 5.7e-12 44_[-1]_27 chrVI:226411-227050 5.7e-12 8_[-1]_63 chrVIII:475510-475863 1.8e-11 70_[-1]_1 chrIX:197266-198033 3.4e-11 34_[+1]_37 chrX:538487-538587 4.4e-11 28_[+1]_43 chrX:233737-233837 5e-11 12_[+1]_59 chrX:204549-204649 5.7e-11 31_[+1]_40 chrXIII:463372-463884 5.7e-11 17_[+1]_54 chrXII:426918-427417 5.7e-11 56_[+1]_15 chrX:355206-355306 5.7e-11 68_[+1]_3 chrII:405698-406347 5.7e-11 29_[+1]_42 chrXI:513083-513581 5.7e-11 50_[-1]_21 chrVIII:466843-467302 1.5e-10 9_[+1]_62 chrXI:490783-491322 1.9e-10 8_[+1]_63 chrV:492205-492547 1.9e-10 26_[-1]_45 chrIV:488415-489162 2.4e-10 59_[-1]_12 chrVI:101184-101671 3.7e-10 71_[+1] chrII:197279-197801 4.2e-10 47_[+1]_24 chrIV:667766-668208 4.2e-10 70_[-1]_1 chrV:487083-487587 6.4e-10 46_[-1]_25 chrIV:802570-802984 1.3e-09 4_[-1]_67 chrXIII:572726-573120 2.1e-09 10_[-1]_61 chrXIII:362963-363297 2.8e-09 25_[+1]_46 chrV:434384-434745 2.8e-09 27_[-1]_44 chrX:415725-415825 3.7e-09 10_[-1]_61 chrXIII:321012-321267 5.9e-09 58_[-1]_13 chrXVI:856768-857156 5.9e-09 32_[+1]_39 chrXIV:632448-632882 6.4e-09 27_[+1]_44 chrVII:1004080-1004413 6.4e-09 61_[+1]_10 chrVII:730975-731402 6.4e-09 42_[+1]_29 chrVII:823364-823719 1.3e-08 34_[+1]_37 chrV:288098-288838 2.6e-08 25_[-1]_46 chrXVI:689371-689831 2.6e-08 65_[+1]_6 chrX:374175-374275 2.6e-08 66_[-1]_5 chrXII:167755-168222 3e-08 6_[-1]_65 chrXV:274503-275005 3.2e-08 39_[+1]_32 chrXIV:104574-105127 3.5e-08 47_[+1]_24 chrXIV:546464-547703 4.3e-08 68_[+1]_3 chrXIII:195966-196282 4.3e-08 59_[-1]_12 chrXIII:549848-551270 4.6e-08 26_[-1]_45 chrXIII:837766-838227 5.7e-08 40_[+1]_31 chrXIV:631721-632101 3.9e-07 19_[-1]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTYVSSGGTTCRATTCCSSBHBGGGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGRTYVSSGGTTCRATTCCSSBHBGGGGC width=29 seqs=48 chrX:531616-531716 ( 1) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrXVI:860206-860665 ( 35) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrX:396579-396679 ( 25) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrIV:83370-83791 ( 59) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrXVI:581849-582451 ( 5) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrIII:151144-151491 ( 18) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrIX:300004-300465 ( 45) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrVI:226411-227050 ( 9) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrVIII:475510-475863 ( 71) AGGTCCCGAGTTCGATCCTCGGTTGGAAC 1 chrIX:197266-198033 ( 35) GAGACCGGGGTTCGACTCCCCGCTTCGGA 1 chrX:538487-538587 ( 29) AGACTGCGGGTTCGAGTCCCGTACGGAAC 1 chrX:233737-233837 ( 13) AGATTCCAGGTTCGAGTCCTGGCGGGGAA 1 chrX:204549-204649 ( 32) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrXIII:463372-463884 ( 18) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrXII:426918-427417 ( 57) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrX:355206-355306 ( 69) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrII:405698-406347 ( 30) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrXI:513083-513581 ( 51) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrVIII:466843-467302 ( 10) AGGTCGCTAGTTCAATTCTGGCAGGTGGC 1 chrXI:490783-491322 ( 9) AGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrV:492205-492547 ( 27) AGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrIV:488415-489162 ( 60) AGATCCCGAGTTCGAACCTCGGTTGGATC 1 chrVI:101184-101671 ( 72) AGGCCCTGGGTTCAATTCCCAGCTCGCCC 1 chrII:197279-197801 ( 48) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrIV:667766-668208 ( 71) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrV:487083-487587 ( 47) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrIV:802570-802984 ( 5) ACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrXIII:572726-573120 ( 11) AGGTCGAGAGTTCGAACCTCCCCTGGAGC 1 chrXIII:362963-363297 ( 26) GAAACCCTGGTTCGATTCTAGGAGATGGC 1 chrV:434384-434745 ( 28) GAAACCCTGGTTCGATTCTAGGAGATGGC 1 chrX:415725-415825 ( 11) GGGTTGCAGGTTCAATTCCTGTCCGTTTC 1 chrXIII:321012-321267 ( 59) AGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrXVI:856768-857156 ( 33) AGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrXIV:632448-632882 ( 28) AGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrVII:1004080-1004413 ( 62) AGGTCGTTAGTTCAATTCTGACAGGTGGC 1 chrVII:730975-731402 ( 43) AGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrVII:823364-823719 ( 35) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrV:288098-288838 ( 26) CCCGCGCTGGTTCAAATCCTGCTGGTGTC 1 chrXVI:689371-689831 ( 66) CCCGCGCTGGTTCAAATCCTGCTGGTGTC 1 chrX:374175-374275 ( 67) AGATTATGGGTTCGACCCCCATCGTGAGT 1 chrXII:167755-168222 ( 7) CCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrXV:274503-275005 ( 40) CCTGCGCAGGTTCGAATCCTGTCTGTGAC 1 chrXIV:104574-105127 ( 48) AGATCATCGGTTCAAATCCGATTGGAAGC 1 chrXIV:546464-547703 ( 69) GGTCTAGTGGTATGATTCTCGCTTTGGGC 1 chrXIII:195966-196282 ( 60) GGTCTAGTGGTATGATTCTCGCTTTGGGC 1 chrXIII:549848-551270 ( 27) AGGCCGCTGGTTTGACTGCTGCTTACGCC 1 chrXIII:837766-838227 ( 41) AGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrXIV:631721-632101 ( 20) GGTCTAGAGGTATGATTCTCGCTTAGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTYVSSGGTTCRATTCCSSBHBGGGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.7202 E= 1.3e-146 70 11 60 -1223 -56 -63 179 -1223 2 -162 149 -188 -42 11 -121 64 -1223 165 -1223 37 -42 125 49 -288 -388 131 96 -130 -107 25 118 -71 -88 -321 208 -1223 -1223 -1223 237 -1223 -1223 -1223 -1223 170 -230 -1223 -1223 161 -1223 225 -1223 -188 21 -1223 174 -1223 170 -1223 -1223 -1223 -107 -40 -4 76 -1223 49 -1223 125 -1223 234 -321 -1223 -1223 188 -321 -18 -288 137 49 -71 -130 79 149 -1223 -288 49 125 -42 -30 88 -1223 37 -288 49 88 12 -42 -162 137 -56 -288 -4 160 -71 -56 -89 170 -230 -107 -40 149 -88 -42 188 -321 -288 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTYVSSGGTTCRATTCCSSBHBGGGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 48 E= 1.3e-146 0.500000 0.208333 0.291667 0.000000 0.208333 0.125000 0.666667 0.000000 0.312500 0.062500 0.541667 0.083333 0.229167 0.208333 0.083333 0.479167 0.000000 0.604167 0.000000 0.395833 0.229167 0.458333 0.270833 0.041667 0.020833 0.479167 0.375000 0.125000 0.145833 0.229167 0.437500 0.187500 0.166667 0.020833 0.812500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.062500 0.000000 0.000000 0.937500 0.000000 0.916667 0.000000 0.083333 0.354167 0.000000 0.645833 0.000000 1.000000 0.000000 0.000000 0.000000 0.145833 0.145833 0.187500 0.520833 0.000000 0.270833 0.000000 0.729167 0.000000 0.979167 0.020833 0.000000 0.000000 0.708333 0.020833 0.270833 0.041667 0.500000 0.270833 0.187500 0.125000 0.333333 0.541667 0.000000 0.041667 0.270833 0.458333 0.229167 0.250000 0.354167 0.000000 0.395833 0.041667 0.270833 0.354167 0.333333 0.229167 0.062500 0.500000 0.208333 0.041667 0.187500 0.583333 0.187500 0.208333 0.104167 0.625000 0.062500 0.145833 0.145833 0.541667 0.166667 0.229167 0.708333 0.020833 0.041667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTYVSSGGTTCRATTCCSSBHBGGGGC MEME-1 regular expression -------------------------------------------------------------------------------- [AGC][GA][GA][TAC][CT][CGA][CG][GC]GGTTC[GA]AT[TC]C[CT][CG][GC][GCT][TCA][GTC][GAT]G[GA]G[CA] -------------------------------------------------------------------------------- Time 356.16 secs. ******************************************************************************** ******************************************************************************** MOTIF WGSBBMNKTGGCBNAGTKGKWWARGS MEME-2 width = 26 sites = 41 llr = 608 E-value = 6.9e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGSBBMNKTGGCBNAGTKGKWWARGS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 61111222:2:::2a2:::145541: pos.-specific C 1:44353::::844:1:1::::1226 probability G :9323125:8a:32:7:595112363 matrix T 3:123233a::232::a314532:1: bits 2.4 * 2.1 * 1.9 * * 1.7 ** * * * Relative 1.4 * **** * * * Entropy 1.2 * **** *** * (21.4 bits) 0.9 * **** *** * * 0.7 * ***** ****** ** 0.5 ** ****** ****** ** 0.2 ****** *************** *** 0.0 -------------------------- Multilevel AGCCCCTGTGGCCCAGTGGGTAAAGC consensus T GGGACT A GT T TATGG G sequence TT G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBMNKTGGCBNAGTKGKWWARGS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrIV:1150729-1151191 - 7 5.27e-12 AAAGTGTTTC AGTCCCAGTGGCCGAGTGGTTAAGGC GATGCC chrVI:191413-191764 - 51 1.81e-11 CAAGAGATTC TGTCCCAGTGGCCGAGTGGTTAAGGC GATGCCCTGC chrXII:167755-168222 - 63 1.83e-10 AATAGTCATA TGGCAACTTGGCCGAGTGGTTAAGGC GAAAGATTAG chrXIV:104574-105127 + 4 1.83e-10 CTC AGCTTCTATGGCCAAGTTGGTAAGGC GCCACACTAG chrII:197279-197801 + 3 2.52e-10 CA AGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrIX:183328-183677 - 37 6.30e-10 AACAAATTCC TGGTCTCTTGGCCCAGTTGGTTAAGG CACCGTGCTA chrVII:774141-774598 + 29 9.72e-10 ATCAATTAAT TGGGCGTGTGGCGTAGTCGGTAGCGC GCTCCCTTAG chrXVI:689371-689831 + 13 9.72e-10 AGATTATTTT GGGCACTATGGCCGAGTGGTTAAGGC GACAGACTTG chrXV:228085-228543 + 66 1.94e-09 ATAAAATATT AGACTCCATGGCCAAGTTGGTTAAGG CGTGCGACT chrIII:151144-151491 - 65 3.28e-09 ATAATTAAAG AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrV:435649-435993 - 29 3.28e-09 CAACAATAAG AGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrIII:127514-127882 + 67 4.23e-09 CAAGATAAAA TGACTCCATGGCCAAGTTGGTTAAGG CGTGCGAC chrXIV:374646-375108 + 41 4.79e-09 CAGAAAAATA AGCGGACTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrXII:592349-592821 - 60 5.42e-09 CAACATACAA TGGGAGTTTGGCCGAGTGGTTTAAGG CGTCAGATTT chrVIII:358286-358761 - 72 6.92e-09 GTA AGCGGATTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrVI:226411-227050 - 56 6.92e-09 GAGATTAAAA TGCCTTGTTGGCGCAATCGGTAGCGC GTATGACTCT chrXVI:622363-622819 - 66 1.40e-08 ATTCTGATA TGCGGATTTAGCTCAGTTGGGAGAGC GCCAGACTGA chrX:517658-517758 - 49 2.18e-08 CATAAAAGTT AAGCGCCGTGGCGCAGTGGAAGCGCG CAGGGCTCAT chrX:424297-424397 - 40 2.18e-08 TTAAATAAGA TGGAGGGTTGGCCGAGTGGTCTAAGG CGGCAGACTT chrVII:1004080-1004413 + 19 2.43e-08 TTCAAGGGTT TGCCTCCTTAGCTTAGTGGTAGAGCG TTGCACTTGT chrXIII:572726-573120 - 58 3.72e-08 AATAACAGAT AGCTTCAGTAGCTCAGTAGGAAGAGC GTCAGTCTCA chrX:396579-396679 - 70 4.57e-08 AAGTA AGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrVI:162033-162384 + 69 4.57e-08 CAAGAAAACA AGCGCAAGTGGTTTAGTGGTAAAATC CAACGT chrIV:83370-83791 + 17 4.57e-08 AAGTTCACTT AGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrXVI:74994-76307 + 49 1.01e-07 AAATAGCACT CGGTCTTGTGGCGGAGTTGGATTTGC TTGACTGTGG chrIII:149714-150210 + 7 1.60e-07 AATGTT GAGCGCCGTGGCGCAGTGGAAGCGCG CAGGGCTCAT chrXV:281725-282573 + 64 2.10e-07 AACATGAAAG CGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrXVI:775658-776028 - 19 2.29e-07 ATAATTCAAA AGCTCGTATGGCGCAGTGGTAGCGCA GCAGATTGCA chrV:492205-492547 - 74 2.97e-07 T ATTCCTCGTGGCCCAATGGTCACGGC GTCTGGCTAC chrXIII:807960-808656 - 35 5.32e-07 CAGAAGAAAA AGGTCCTATAGTGTAGTGGTTATCAC TTTCGGTTCT chrXI:302725-303206 + 2 5.32e-07 A TGAAGCGGTGGCTCAATGGTAGAGCT TTCGACTCCA chrVII:287232-287721 - 5 5.32e-07 TATTTCAAGA TGAAGCGGTGGCTCAATGGTAGAGCT TTCG chrX:354017-354117 + 70 1.15e-06 ATCATTTATC ACTCTCGGTAGCCAAGTTGGTTTAAG GCGCA chrX:542836-542936 - 33 1.15e-06 ACAATTAAAT ACTCTCGGTAGCCAAGTTGGTTTAAG GCGCAAGACT chrX:520211-520311 - 33 1.24e-06 AGATGAAGGA AACAGCTGAGGCCTACTTGGGTAAGC CAGTTAAGAA chrVII:56383-58892 - 45 1.24e-06 TGGTCAATAA AGAATCGGTGGCGGAATCGTATTTGG TACCTGCTTG chrXI:258583-260009 + 39 1.34e-06 CCGTTGCTTT AGTCGCTTTGGCTAACTTTGTTGCCG CTGAATCCGC chrIV:802570-802984 - 51 1.78e-06 CATGAATTGT CGGTCCTATAGTGTAGTGGTTATCAC TTTCGGTTTT chrIV:410210-410773 + 41 2.05e-06 GGTGCCGAGA TGCAGACGTGGCCAACTGTGTCTGCC GTCGCAAAAT chrXVI:640670-641690 + 59 4.24e-06 ATGAACTCTA AGCTAGTGAGGCCCACTGTAAACAGC CATTTTTCAA chrV:23377-23838 - 8 5.44e-06 GGTTGTAGGT AGGCAAGATGGTGAGGTTGAATCCGC CCTAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBMNKTGGCBNAGTKGKWWARGS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1150729-1151191 5.3e-12 6_[-2]_68 chrVI:191413-191764 1.8e-11 50_[-2]_24 chrXII:167755-168222 1.8e-10 62_[-2]_12 chrXIV:104574-105127 1.8e-10 3_[+2]_71 chrII:197279-197801 2.5e-10 2_[+2]_72 chrIX:183328-183677 6.3e-10 36_[-2]_38 chrVII:774141-774598 9.7e-10 28_[+2]_46 chrXVI:689371-689831 9.7e-10 12_[+2]_62 chrXV:228085-228543 1.9e-09 65_[+2]_9 chrIII:151144-151491 3.3e-09 64_[-2]_10 chrV:435649-435993 3.3e-09 28_[-2]_46 chrIII:127514-127882 4.2e-09 66_[+2]_8 chrXIV:374646-375108 4.8e-09 40_[+2]_34 chrXII:592349-592821 5.4e-09 59_[-2]_15 chrVIII:358286-358761 6.9e-09 71_[-2]_3 chrVI:226411-227050 6.9e-09 55_[-2]_19 chrXVI:622363-622819 1.4e-08 65_[-2]_9 chrX:517658-517758 2.2e-08 48_[-2]_26 chrX:424297-424397 2.2e-08 39_[-2]_35 chrVII:1004080-1004413 2.4e-08 18_[+2]_56 chrXIII:572726-573120 3.7e-08 57_[-2]_17 chrX:396579-396679 4.6e-08 69_[-2]_5 chrVI:162033-162384 4.6e-08 68_[+2]_6 chrIV:83370-83791 4.6e-08 16_[+2]_58 chrXVI:74994-76307 1e-07 48_[+2]_26 chrIII:149714-150210 1.6e-07 6_[+2]_68 chrXV:281725-282573 2.1e-07 63_[+2]_11 chrXVI:775658-776028 2.3e-07 18_[-2]_56 chrV:492205-492547 3e-07 73_[-2]_1 chrXIII:807960-808656 5.3e-07 34_[-2]_40 chrXI:302725-303206 5.3e-07 1_[+2]_73 chrVII:287232-287721 5.3e-07 4_[-2]_70 chrX:354017-354117 1.2e-06 69_[+2]_5 chrX:542836-542936 1.2e-06 32_[-2]_42 chrX:520211-520311 1.2e-06 32_[-2]_42 chrVII:56383-58892 1.2e-06 44_[-2]_30 chrXI:258583-260009 1.3e-06 38_[+2]_36 chrIV:802570-802984 1.8e-06 50_[-2]_24 chrIV:410210-410773 2e-06 40_[+2]_34 chrXVI:640670-641690 4.2e-06 58_[+2]_16 chrV:23377-23838 5.4e-06 7_[-2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBMNKTGGCBNAGTKGKWWARGS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGSBBMNKTGGCBNAGTKGKWWARGS width=26 seqs=41 chrIV:1150729-1151191 ( 7) AGTCCCAGTGGCCGAGTGGTTAAGGC 1 chrVI:191413-191764 ( 51) TGTCCCAGTGGCCGAGTGGTTAAGGC 1 chrXII:167755-168222 ( 63) TGGCAACTTGGCCGAGTGGTTAAGGC 1 chrXIV:104574-105127 ( 4) AGCTTCTATGGCCAAGTTGGTAAGGC 1 chrII:197279-197801 ( 3) AGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrIX:183328-183677 ( 37) TGGTCTCTTGGCCCAGTTGGTTAAGG 1 chrVII:774141-774598 ( 29) TGGGCGTGTGGCGTAGTCGGTAGCGC 1 chrXVI:689371-689831 ( 13) GGGCACTATGGCCGAGTGGTTAAGGC 1 chrXV:228085-228543 ( 66) AGACTCCATGGCCAAGTTGGTTAAGG 1 chrIII:151144-151491 ( 65) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrV:435649-435993 ( 29) AGCCTTGTTGGCGCAATCGGTAGCGC 1 chrIII:127514-127882 ( 67) TGACTCCATGGCCAAGTTGGTTAAGG 1 chrXIV:374646-375108 ( 41) AGCGGACTTAGCTCAGTTGGGAGAGC 1 chrXII:592349-592821 ( 60) TGGGAGTTTGGCCGAGTGGTTTAAGG 1 chrVIII:358286-358761 ( 72) AGCGGATTTAGCTCAGTTGGGAGAGC 1 chrVI:226411-227050 ( 56) TGCCTTGTTGGCGCAATCGGTAGCGC 1 chrXVI:622363-622819 ( 66) TGCGGATTTAGCTCAGTTGGGAGAGC 1 chrX:517658-517758 ( 49) AAGCGCCGTGGCGCAGTGGAAGCGCG 1 chrX:424297-424397 ( 40) TGGAGGGTTGGCCGAGTGGTCTAAGG 1 chrVII:1004080-1004413 ( 19) TGCCTCCTTAGCTTAGTGGTAGAGCG 1 chrXIII:572726-573120 ( 58) AGCTTCAGTAGCTCAGTAGGAAGAGC 1 chrX:396579-396679 ( 70) AGCGCAAGTGGTTTAGTGGTAAAATC 1 chrVI:162033-162384 ( 69) AGCGCAAGTGGTTTAGTGGTAAAATC 1 chrIV:83370-83791 ( 17) AGCGCAAGTGGTTTAGTGGTAAAATC 1 chrXVI:74994-76307 ( 49) CGGTCTTGTGGCGGAGTTGGATTTGC 1 chrIII:149714-150210 ( 7) GAGCGCCGTGGCGCAGTGGAAGCGCG 1 chrXV:281725-282573 ( 64) CGCGCAAGTGGTTTAGTGGTAAAATC 1 chrXVI:775658-776028 ( 19) AGCTCGTATGGCGCAGTGGTAGCGCA 1 chrV:492205-492547 ( 74) ATTCCTCGTGGCCCAATGGTCACGGC 1 chrXIII:807960-808656 ( 35) AGGTCCTATAGTGTAGTGGTTATCAC 1 chrXI:302725-303206 ( 2) TGAAGCGGTGGCTCAATGGTAGAGCT 1 chrVII:287232-287721 ( 5) TGAAGCGGTGGCTCAATGGTAGAGCT 1 chrX:354017-354117 ( 70) ACTCTCGGTAGCCAAGTTGGTTTAAG 1 chrX:542836-542936 ( 33) ACTCTCGGTAGCCAAGTTGGTTTAAG 1 chrX:520211-520311 ( 33) AACAGCTGAGGCCTACTTGGGTAAGC 1 chrVII:56383-58892 ( 45) AGAATCGGTGGCGGAATCGTATTTGG 1 chrXI:258583-260009 ( 39) AGTCGCTTTGGCTAACTTTGTTGCCG 1 chrIV:802570-802984 ( 51) CGGTCCTATAGTGTAGTGGTTATCAC 1 chrIV:410210-410773 ( 41) TGCAGACGTGGCCAACTGTGTCTGCC 1 chrXVI:640670-641690 ( 59) AGCTAGTGAGGCCCACTGTAAACAGC 1 chrV:23377-23838 ( 8) AGGCAAGATGGTGAGGTTGAATCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBMNKTGGCBNAGTKGKWWARGS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 45000 bayes= 10.3776 E= 6.9e-053 87 -140 -198 5 -207 -198 215 -365 -133 110 72 -107 -107 110 19 -48 -133 82 48 -20 -33 126 -66 -85 -85 48 34 5 -65 -1200 134 5 -265 -1200 -1200 163 -48 -1200 202 -1200 -1200 -1200 237 -1200 -1200 210 -1200 -85 -1200 110 60 -7 -65 102 2 -48 167 -1200 -298 -1200 -85 -98 192 -1200 -1200 -1200 -1200 170 -365 -66 141 15 -1200 -1200 226 -207 -165 -1200 126 52 25 -198 -98 67 74 -298 -40 5 59 -40 19 -85 52 2 72 -265 -165 2 166 -165 -365 166 72 -265 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBMNKTGGCBNAGTKGKWWARGS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 41 E= 6.9e-053 0.560976 0.073171 0.048780 0.317073 0.073171 0.048780 0.853659 0.024390 0.121951 0.414634 0.317073 0.146341 0.146341 0.414634 0.219512 0.219512 0.121951 0.341463 0.268293 0.268293 0.243902 0.463415 0.121951 0.170732 0.170732 0.268293 0.243902 0.317073 0.195122 0.000000 0.487805 0.317073 0.048780 0.000000 0.000000 0.951220 0.219512 0.000000 0.780488 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.829268 0.000000 0.170732 0.000000 0.414634 0.292683 0.292683 0.195122 0.390244 0.195122 0.219512 0.975610 0.000000 0.024390 0.000000 0.170732 0.097561 0.731707 0.000000 0.000000 0.000000 0.000000 1.000000 0.024390 0.121951 0.512195 0.341463 0.000000 0.000000 0.926829 0.073171 0.097561 0.000000 0.463415 0.439024 0.365854 0.048780 0.097561 0.487805 0.512195 0.024390 0.146341 0.317073 0.463415 0.146341 0.219512 0.170732 0.439024 0.195122 0.317073 0.048780 0.097561 0.195122 0.609756 0.097561 0.024390 0.609756 0.317073 0.048780 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBMNKTGGCBNAGTKGKWWARGS MEME-2 regular expression -------------------------------------------------------------------------------- [AT]G[CG][CGT][CGT][CA][TCG][GT]T[GA]GC[CGT][CT]AGT[GT]G[GT][TA][AT][AG][AG]G[CG] -------------------------------------------------------------------------------- Time 678.83 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTTTTTTTYTYCWTYT MEME-3 width = 21 sites = 77 llr = 834 E-value = 1.3e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTYTYCWTYT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3122::::11212::24::1 pos.-specific C :1:12212123225155:241 probability G ::1:1::1::::1::1::211 matrix T a68768979866649436657 bits 2.4 2.1 1.9 1.7 Relative 1.4 * * Entropy 1.2 * * * * (15.6 bits) 0.9 * * ** ** * 0.7 * * ***** ***** 0.5 **** ******* ******** 0.2 ********************* 0.0 --------------------- Multilevel TTTTTTTTTTTTTCTCCTTTT consensus A A C T TTA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTYTYCWTYT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXII:704292-704610 + 57 2.07e-09 TTCATTTTTT TTTTTCTTTTCTCCTCCATCT AATTTCACCT chrXVI:654021-656227 - 4 3.84e-09 GATTTTGGTT TTTTTTTTTTTTTTTTTTTCT AAA chrX:58764-58864 - 28 4.74e-09 CAGCAATTAA TTTTTTTTTTTTTTTTTTTTT CACGCTCTTG chrXIII:159232-160204 + 46 1.79e-08 TTTCATACTC TTTTCTTTTCTCTCTCCATTT CCCACTAGTT chrIV:541000-542097 - 56 2.13e-08 TCTTGCTGAT TTTCTTTTTTCTTATTCTTCT TGTGCTTCAT chrIV:1239349-1240341 + 50 5.80e-08 TAATAAACAA TTTTCTTGTTTTCCTTCATTT TACAAAATCT chrXIV:568083-568617 - 4 1.08e-07 ATTAATGCAT TTTTTTTTTTTATCTCCAGCA TTA chrII:477165-477810 + 72 1.44e-07 GCTTTTCCTA TTTTTTTTTTTCCATTTTTCT TTCTCTCT chrVII:857054-857583 - 32 1.92e-07 GGCCCACCTT TATTTCTTTTTTTTTCCATTA GAACGAGCAT chrVII:771785-772268 + 77 2.21e-07 ATTTCAGCCG TATTTTTCTTTTTTTCTTTCG CAC chrIV:667766-668208 - 47 2.21e-07 AGAGACCATT TTTATTTTTTCTCCTCTATTG TTAAAAATAG chrXV:287623-288444 + 3 2.21e-07 AA TATTTTTTTTTCTCTTCTCTA GTACTCATCC chrXV:86958-88853 - 60 2.91e-07 ACTGCCAGCC TTATTTTGTTCTTCTTCTTTT TTGACTTCTT chrXIII:228960-230147 + 52 3.32e-07 TTTCAAGCAA TTTATTTTTCTTACTTCTCCT TACTCTCTCA chrIX:420710-421211 - 16 3.79e-07 CATTTTGCAT TATTATTTTTTTTTTCCAGCG GAATTTGGAA chrX:703342-703442 + 7 4.32e-07 TGTTTG TTTATTTGTTTATTTCCTGCT GAACTGAATA chrI:181151-181419 + 20 4.32e-07 TTAGCAACCA TTATTTTTTCTTTTTCCTCCT ATACTTCATA chrXII:214688-215034 - 45 4.32e-07 TCCATTTATT TTTTACTTTTATTCTCCTTTA TTTTTAACAA chrIV:519680-520240 + 2 4.92e-07 T TTTTTTTTTTTAGCTCCTCTC ACAAAAGTAC chrX:396579-396679 - 3 5.58e-07 GGCTTGCGCA TTTCTTTTTTATATTTCTTCT CT chrIV:616619-617206 + 38 6.33e-07 GTGCCGTTGT TTTTATTTTTTCTCGTCTTTT ATCTCTTTTA chrX:538487-538587 + 67 7.16e-07 CGTTGATTAT TTTTTTTTTTTCGTTTCTCTA TAGAAAAAAT chrVIII:281487-283186 - 62 8.08e-07 AAATAAAACT TTTTCTTTTCTTTGTCCATCT CAGGTTTATG chrX:233737-233837 - 77 8.08e-07 CCA TTTAATTTTTCTCTTCAATTT ATAGAATGGT chrXV:677931-678888 - 24 9.11e-07 ATGAAAAATT TTTTTTTTTTCAAATTCTCCT TAGGCTAAAG chrXVI:821608-822233 + 32 1.15e-06 TTCTGATTCT TTTTTCTTTCATTCTTTTGTT GTTTTTGACT chrXIII:431869-432490 - 78 1.45e-06 GT TTTATTTTTTATTTTTTACCT TTGGCCCCAC chrVIII:466843-467302 + 49 1.45e-06 ATTATACCGG TATTATTTTTTTTCCCTTTGT TCTTATTTCT chrXIII:306525-307178 - 79 2.26e-06 A TTTAATTTTTACCTTCCTGTT CCTGCATAAC chrXII:1028818-1030336 - 48 2.51e-06 GGGAACAAGT TAGCTTCCTTCTTTTCCTTCT TGGTCAATTT chrXIII:510946-512328 + 2 2.51e-06 T TTTTTTCCTTCTGCTTATTGT ACTATCAAAG chrXIV:715434-718332 + 72 2.51e-06 ATACCATCAA TTGACTTTTTCTTCTTCTCTA AAGCATCG chrVII:648728-650761 + 46 2.51e-06 GCCTTGACCG TCTTCCTCTTCCTCTTCTTCG CCTTCTTCAG chrIX:96800-97686 - 79 2.51e-06 T TTTTTTTTTTCAGTTTAAGTT TTCCAATTTT chrVII:736213-736845 - 67 2.51e-06 GAAGTAACTT TTTTTTTTTTTTTATAAATTT ATACATCTTT chrXII:722683-723131 + 21 2.79e-06 TATAGTTTAA TTTTATTCTCATTTTCATTTT ACAATTTTAA chrXVI:860206-860665 + 67 3.10e-06 CTTGCGCAGA TTTTATTTTTTGCTCCCTTCT AAAGCTCTGG chrIX:388223-388497 + 51 3.10e-06 GGCGGGCCCC TTTTTTCTTCTATATCTATTT ATTATCTAAA chrIX:41000-42107 - 78 3.44e-06 TT TTTTCCTTTCTCCCTCTATTG GTTTCAAATT chrIX:197266-198033 + 64 3.44e-06 CCGCTTCGGA GTTATTTTTTATTCTTTTTTT TTTAGGGACT chrXVI:308584-309947 + 7 3.81e-06 CTGACC TCTTTTTCTTTCTTTACTTCT GGAGATTTCT chrII:530955-532265 + 33 5.13e-06 TCTCACATAA TTATGTCTTTTTTCTTCTCTT AAACGAGCAA chrV:435649-435993 + 57 5.65e-06 ACAAGGCTCT TATTGTTGTTTTTCTGATTCT TATGGAGGGA chrV:492205-492547 - 2 5.65e-06 GGGGAAGGAT TATTTTTCTTTTAATCAACTT T chrVI:213142-213464 + 10 6.22e-06 GGGTGCACA TAGTTTTTTTCAACTGCTTTT CCTCGAGGTC chrXIII:861157-861686 + 6 6.83e-06 TTCCA GTGTTTTTTTTCCCTTATTTT GTGGGTTCAT chrV:61003-62151 + 8 6.83e-06 CAAACAT TTTACCTCTTTTGCCTCATTT GTACACAGCG chrIX:316026-316470 + 42 6.83e-06 GCTTTTATCA TTTTATTTCTCTTCTCCTTAG GAGGAAATAC chrVII:255164-255773 + 57 6.83e-06 TATCATGCCA TTTTTCTTTCCTTTCTCAGCG ATGTTTTGTA chrXII:92228-92712 + 27 7.50e-06 GTACTCCTTT TATATGTTTCTTTATCCATTT ACACTATCAA chrXVI:227509-227839 - 39 7.50e-06 GCTCAAGGTT TATTTCTTTCTTCTTTAATGT TCTTGGCACT chrV:443034-443326 - 33 7.50e-06 TTGAAAATCT TTTTGTCTTTTTGTTCAACTT AAAGAATGAA chrV:432609-432848 + 50 8.23e-06 CTTCAGGTGT TTTATGTGTTCTACTCCTGTT GCGGCAGTAA chrIV:509732-510336 - 73 8.23e-06 ACACAAG TTTTATCTTTCTTATTAATTG TATTATTAAA chrIV:722311-722823 + 12 9.02e-06 GGCATCTTCA TATTATTTTTCTCACCTTGCT GCTATTCTAA chrX:531616-531716 + 32 1.08e-05 GCTTGCGCAG TTTCTTTTCTTTTTTTCTGGA AAATAAGAAA chrII:88903-89496 + 74 1.18e-05 TATGCTTTGG TTTCTTTTCATCTCTTCTTGT GAAAAA chrXI:282802-284969 - 79 1.18e-05 T TAGCTTCGTCCTTCTTCTTTT CAGCCTTTGA chrXI:513083-513581 - 19 1.18e-05 ATTTTTTATT TTGCTTTTTATTCCTCCTGTA ATATCGCTTT chrVII:156179-157638 + 60 1.18e-05 TTACTTCCTG TATCTTTTTTTTTATCAACTC GCTTGAATCA chrVIII:225438-226999 - 20 1.40e-05 CTTCGCCCAA TTTTCCTCTTTCGTTGATTCT GTCATTGCCA chrIV:980759-981131 + 2 1.52e-05 T TATTCTTTTTTATCGCATTGT CATTCTGGTA chrVII:31151-31812 - 48 1.80e-05 CATTGTTACC TCTTTCTTTTATTATCTAGCG GAAATGCAAC chrIV:1449869-1451837 + 60 2.12e-05 TCTTTACTTA TATATTCGTTTACCTCTTTGT TCTTTATCTA chrXVI:170907-171757 - 29 2.12e-05 CGCATTTCCG GAGTTTTCTTTTTTTTTATTT GGGGTAATTT chrV:51805-53282 - 78 2.12e-05 TT TCTATCTGTTTTGTCTCTTCT CTTCCTCTCT chrIV:562904-563092 + 58 2.12e-05 GCGGCTATTT TTTTCTTTTTCAAATGTATTT GAGTCGTTTA chrXI:490783-491322 + 44 2.29e-05 GGAAGAATTT TTTTACTTTTATAATTTTCTT ATTATCTTTT chrX:79168-79268 - 79 2.29e-05 A TATTTTTTCATTTTTCTTTTA ACCATCACAA chrXV:514201-514774 + 28 2.29e-05 ATCATGCATC TTTACTCTTAAATCTCCATTT GTCCACCGAC chrVII:616386-617274 + 34 2.29e-05 ACTTCTTGAA TAATTTTTTCTGCCTCTTTCT TGTCTCTTTC chrIV:540367-540639 - 32 2.48e-05 ATCTACTACT TTTTGCCCCTCTTCTTCACCT ATTTTATTTA chrV:99860-100324 - 13 2.48e-05 AACAAATTCT TCTATCTCTATCTCTCCATGT CGCTTATATT chrXII:447996-448983 - 6 3.38e-05 TCCATTCCCC TAGTCTTTTTTAGTTCTTTCC GTTCG chrIX:300004-300465 + 7 4.21e-05 TAATGA TTTAATTTTTCTATTGAATTG AAAATGGTAA chrXII:253740-255339 + 50 4.53e-05 ACCTTTCGCA TCTCATTCTTTCCATCCTGTA GACGGGTTTT chrXII:237496-237948 + 9 5.59e-05 TTGTATAA TCTACTTCTTCTTCTCCTGAC ATAGTCAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTYTYCWTYT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:704292-704610 2.1e-09 56_[+3]_23 chrXVI:654021-656227 3.8e-09 3_[-3]_76 chrX:58764-58864 4.7e-09 27_[-3]_52 chrXIII:159232-160204 1.8e-08 45_[+3]_34 chrIV:541000-542097 2.1e-08 55_[-3]_24 chrIV:1239349-1240341 5.8e-08 49_[+3]_30 chrXIV:568083-568617 1.1e-07 3_[-3]_76 chrII:477165-477810 1.4e-07 71_[+3]_8 chrVII:857054-857583 1.9e-07 31_[-3]_48 chrVII:771785-772268 2.2e-07 76_[+3]_3 chrIV:667766-668208 2.2e-07 46_[-3]_33 chrXV:287623-288444 2.2e-07 2_[+3]_77 chrXV:86958-88853 2.9e-07 59_[-3]_20 chrXIII:228960-230147 3.3e-07 51_[+3]_28 chrIX:420710-421211 3.8e-07 15_[-3]_64 chrX:703342-703442 4.3e-07 6_[+3]_73 chrI:181151-181419 4.3e-07 19_[+3]_60 chrXII:214688-215034 4.3e-07 44_[-3]_35 chrIV:519680-520240 4.9e-07 1_[+3]_78 chrX:396579-396679 5.6e-07 2_[-3]_77 chrIV:616619-617206 6.3e-07 37_[+3]_42 chrX:538487-538587 7.2e-07 66_[+3]_13 chrVIII:281487-283186 8.1e-07 61_[-3]_18 chrX:233737-233837 8.1e-07 76_[-3]_3 chrXV:677931-678888 9.1e-07 23_[-3]_56 chrXVI:821608-822233 1.2e-06 31_[+3]_48 chrXIII:431869-432490 1.5e-06 77_[-3]_2 chrVIII:466843-467302 1.5e-06 48_[+3]_31 chrXIII:306525-307178 2.3e-06 78_[-3]_1 chrXII:1028818-1030336 2.5e-06 47_[-3]_32 chrXIII:510946-512328 2.5e-06 1_[+3]_78 chrXIV:715434-718332 2.5e-06 71_[+3]_8 chrVII:648728-650761 2.5e-06 45_[+3]_34 chrIX:96800-97686 2.5e-06 78_[-3]_1 chrVII:736213-736845 2.5e-06 66_[-3]_13 chrXII:722683-723131 2.8e-06 20_[+3]_59 chrXVI:860206-860665 3.1e-06 66_[+3]_13 chrIX:388223-388497 3.1e-06 50_[+3]_29 chrIX:41000-42107 3.4e-06 77_[-3]_2 chrIX:197266-198033 3.4e-06 63_[+3]_16 chrXVI:308584-309947 3.8e-06 6_[+3]_73 chrII:530955-532265 5.1e-06 32_[+3]_47 chrV:435649-435993 5.7e-06 56_[+3]_23 chrV:492205-492547 5.7e-06 1_[-3]_78 chrVI:213142-213464 6.2e-06 9_[+3]_70 chrXIII:861157-861686 6.8e-06 5_[+3]_74 chrV:61003-62151 6.8e-06 7_[+3]_72 chrIX:316026-316470 6.8e-06 41_[+3]_38 chrVII:255164-255773 6.8e-06 56_[+3]_23 chrXII:92228-92712 7.5e-06 26_[+3]_53 chrXVI:227509-227839 7.5e-06 38_[-3]_41 chrV:443034-443326 7.5e-06 32_[-3]_47 chrV:432609-432848 8.2e-06 49_[+3]_30 chrIV:509732-510336 8.2e-06 72_[-3]_7 chrIV:722311-722823 9e-06 11_[+3]_68 chrX:531616-531716 1.1e-05 31_[+3]_48 chrII:88903-89496 1.2e-05 73_[+3]_6 chrXI:282802-284969 1.2e-05 78_[-3]_1 chrXI:513083-513581 1.2e-05 18_[-3]_61 chrVII:156179-157638 1.2e-05 59_[+3]_20 chrVIII:225438-226999 1.4e-05 19_[-3]_60 chrIV:980759-981131 1.5e-05 1_[+3]_78 chrVII:31151-31812 1.8e-05 47_[-3]_32 chrIV:1449869-1451837 2.1e-05 59_[+3]_20 chrXVI:170907-171757 2.1e-05 28_[-3]_51 chrV:51805-53282 2.1e-05 77_[-3]_2 chrIV:562904-563092 2.1e-05 57_[+3]_22 chrXI:490783-491322 2.3e-05 43_[+3]_36 chrX:79168-79268 2.3e-05 78_[-3]_1 chrXV:514201-514774 2.3e-05 27_[+3]_52 chrVII:616386-617274 2.3e-05 33_[+3]_46 chrIV:540367-540639 2.5e-05 31_[-3]_48 chrV:99860-100324 2.5e-05 12_[-3]_67 chrXII:447996-448983 3.4e-05 5_[-3]_74 chrIX:300004-300465 4.2e-05 6_[+3]_73 chrXII:253740-255339 4.5e-05 49_[+3]_30 chrXII:237496-237948 5.6e-05 8_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTYTYCWTYT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTTTTTTTYTYCWTYT width=21 seqs=77 chrXII:704292-704610 ( 57) TTTTTCTTTTCTCCTCCATCT 1 chrXVI:654021-656227 ( 4) TTTTTTTTTTTTTTTTTTTCT 1 chrX:58764-58864 ( 28) TTTTTTTTTTTTTTTTTTTTT 1 chrXIII:159232-160204 ( 46) TTTTCTTTTCTCTCTCCATTT 1 chrIV:541000-542097 ( 56) TTTCTTTTTTCTTATTCTTCT 1 chrIV:1239349-1240341 ( 50) TTTTCTTGTTTTCCTTCATTT 1 chrXIV:568083-568617 ( 4) TTTTTTTTTTTATCTCCAGCA 1 chrII:477165-477810 ( 72) TTTTTTTTTTTCCATTTTTCT 1 chrVII:857054-857583 ( 32) TATTTCTTTTTTTTTCCATTA 1 chrVII:771785-772268 ( 77) TATTTTTCTTTTTTTCTTTCG 1 chrIV:667766-668208 ( 47) TTTATTTTTTCTCCTCTATTG 1 chrXV:287623-288444 ( 3) TATTTTTTTTTCTCTTCTCTA 1 chrXV:86958-88853 ( 60) TTATTTTGTTCTTCTTCTTTT 1 chrXIII:228960-230147 ( 52) TTTATTTTTCTTACTTCTCCT 1 chrIX:420710-421211 ( 16) TATTATTTTTTTTTTCCAGCG 1 chrX:703342-703442 ( 7) TTTATTTGTTTATTTCCTGCT 1 chrI:181151-181419 ( 20) TTATTTTTTCTTTTTCCTCCT 1 chrXII:214688-215034 ( 45) TTTTACTTTTATTCTCCTTTA 1 chrIV:519680-520240 ( 2) TTTTTTTTTTTAGCTCCTCTC 1 chrX:396579-396679 ( 3) TTTCTTTTTTATATTTCTTCT 1 chrIV:616619-617206 ( 38) TTTTATTTTTTCTCGTCTTTT 1 chrX:538487-538587 ( 67) TTTTTTTTTTTCGTTTCTCTA 1 chrVIII:281487-283186 ( 62) TTTTCTTTTCTTTGTCCATCT 1 chrX:233737-233837 ( 77) TTTAATTTTTCTCTTCAATTT 1 chrXV:677931-678888 ( 24) TTTTTTTTTTCAAATTCTCCT 1 chrXVI:821608-822233 ( 32) TTTTTCTTTCATTCTTTTGTT 1 chrXIII:431869-432490 ( 78) TTTATTTTTTATTTTTTACCT 1 chrVIII:466843-467302 ( 49) TATTATTTTTTTTCCCTTTGT 1 chrXIII:306525-307178 ( 79) TTTAATTTTTACCTTCCTGTT 1 chrXII:1028818-1030336 ( 48) TAGCTTCCTTCTTTTCCTTCT 1 chrXIII:510946-512328 ( 2) TTTTTTCCTTCTGCTTATTGT 1 chrXIV:715434-718332 ( 72) TTGACTTTTTCTTCTTCTCTA 1 chrVII:648728-650761 ( 46) TCTTCCTCTTCCTCTTCTTCG 1 chrIX:96800-97686 ( 79) TTTTTTTTTTCAGTTTAAGTT 1 chrVII:736213-736845 ( 67) TTTTTTTTTTTTTATAAATTT 1 chrXII:722683-723131 ( 21) TTTTATTCTCATTTTCATTTT 1 chrXVI:860206-860665 ( 67) TTTTATTTTTTGCTCCCTTCT 1 chrIX:388223-388497 ( 51) TTTTTTCTTCTATATCTATTT 1 chrIX:41000-42107 ( 78) TTTTCCTTTCTCCCTCTATTG 1 chrIX:197266-198033 ( 64) GTTATTTTTTATTCTTTTTTT 1 chrXVI:308584-309947 ( 7) TCTTTTTCTTTCTTTACTTCT 1 chrII:530955-532265 ( 33) TTATGTCTTTTTTCTTCTCTT 1 chrV:435649-435993 ( 57) TATTGTTGTTTTTCTGATTCT 1 chrV:492205-492547 ( 2) TATTTTTCTTTTAATCAACTT 1 chrVI:213142-213464 ( 10) TAGTTTTTTTCAACTGCTTTT 1 chrXIII:861157-861686 ( 6) GTGTTTTTTTTCCCTTATTTT 1 chrV:61003-62151 ( 8) TTTACCTCTTTTGCCTCATTT 1 chrIX:316026-316470 ( 42) TTTTATTTCTCTTCTCCTTAG 1 chrVII:255164-255773 ( 57) TTTTTCTTTCCTTTCTCAGCG 1 chrXII:92228-92712 ( 27) TATATGTTTCTTTATCCATTT 1 chrXVI:227509-227839 ( 39) TATTTCTTTCTTCTTTAATGT 1 chrV:443034-443326 ( 33) TTTTGTCTTTTTGTTCAACTT 1 chrV:432609-432848 ( 50) TTTATGTGTTCTACTCCTGTT 1 chrIV:509732-510336 ( 73) TTTTATCTTTCTTATTAATTG 1 chrIV:722311-722823 ( 12) TATTATTTTTCTCACCTTGCT 1 chrX:531616-531716 ( 32) TTTCTTTTCTTTTTTTCTGGA 1 chrII:88903-89496 ( 74) TTTCTTTTCATCTCTTCTTGT 1 chrXI:282802-284969 ( 79) TAGCTTCGTCCTTCTTCTTTT 1 chrXI:513083-513581 ( 19) TTGCTTTTTATTCCTCCTGTA 1 chrVII:156179-157638 ( 60) TATCTTTTTTTTTATCAACTC 1 chrVIII:225438-226999 ( 20) TTTTCCTCTTTCGTTGATTCT 1 chrIV:980759-981131 ( 2) TATTCTTTTTTATCGCATTGT 1 chrVII:31151-31812 ( 48) TCTTTCTTTTATTATCTAGCG 1 chrIV:1449869-1451837 ( 60) TATATTCGTTTACCTCTTTGT 1 chrXVI:170907-171757 ( 29) GAGTTTTCTTTTTTTTTATTT 1 chrV:51805-53282 ( 78) TCTATCTGTTTTGTCTCTTCT 1 chrIV:562904-563092 ( 58) TTTTCTTTTTCAAATGTATTT 1 chrXI:490783-491322 ( 44) TTTTACTTTTATAATTTTCTT 1 chrX:79168-79268 ( 79) TATTTTTTCATTTTTCTTTTA 1 chrXV:514201-514774 ( 28) TTTACTCTTAAATCTCCATTT 1 chrVII:616386-617274 ( 34) TAATTTTTTCTGCCTCTTTCT 1 chrIV:540367-540639 ( 32) TTTTGCCCCTCTTCTTCACCT 1 chrV:99860-100324 ( 13) TCTATCTCTATCTCTCCATGT 1 chrXII:447996-448983 ( 6) TAGTCTTTTTTAGTTCTTTCC 1 chrIX:300004-300465 ( 7) TTTAATTTTTCTATTGAATTG 1 chrXII:253740-255339 ( 50) TCTCATTCTTTCCATCCTGTA 1 chrXII:237496-237948 ( 9) TCTACTTCTTCTTCTCCTGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTYTYCWTYT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.192 E= 1.3e-034 -1291 -1291 -231 165 -24 -108 -1291 108 -256 -1291 -89 146 -48 -72 -1291 111 -76 -19 -189 96 -1291 1 -289 134 -1291 -57 -1291 150 -1291 -8 -89 122 -1291 -157 -1291 161 -224 -19 -1291 132 -124 57 -1291 93 -98 -8 -289 105 -139 1 -72 90 -76 124 -389 19 -1291 -131 -289 154 -356 136 -157 44 -66 150 -1291 -24 29 -1291 -1291 102 -1291 -8 -8 105 -356 86 -89 76 -124 -189 -57 116 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTYTYCWTYT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 77 E= 1.3e-034 0.000000 0.000000 0.038961 0.961039 0.259740 0.090909 0.000000 0.649351 0.051948 0.000000 0.103896 0.844156 0.220779 0.116883 0.000000 0.662338 0.181818 0.168831 0.051948 0.597403 0.000000 0.194805 0.025974 0.779221 0.000000 0.129870 0.000000 0.870130 0.000000 0.181818 0.103896 0.714286 0.000000 0.064935 0.000000 0.935065 0.064935 0.168831 0.000000 0.766234 0.129870 0.285714 0.000000 0.584416 0.155844 0.181818 0.025974 0.636364 0.116883 0.194805 0.116883 0.571429 0.181818 0.454545 0.012987 0.350649 0.000000 0.077922 0.025974 0.896104 0.025974 0.493506 0.064935 0.415584 0.194805 0.545455 0.000000 0.259740 0.376623 0.000000 0.000000 0.623377 0.000000 0.181818 0.181818 0.636364 0.025974 0.350649 0.103896 0.519481 0.129870 0.051948 0.129870 0.688312 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTYTYCWTYT MEME-3 regular expression -------------------------------------------------------------------------------- T[TA]T[TA]TTTTTT[TC]TT[CT]T[CT][CT][TA]T[TC]T -------------------------------------------------------------------------------- Time 1000.86 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:373935-375770 9.68e-01 100 chrVIII:395470-395796 5.07e-01 100 chrXV:228085-228543 1.58e-05 65_[+2(1.94e-09)]_9 chrVII:156179-157638 1.82e-02 59_[+3(1.18e-05)]_20 chrXI:513083-513581 2.94e-09 18_[-3(1.18e-05)]_11_[-1(5.71e-11)]_\ 21 chrI:141502-141979 2.87e-01 100 chrIV:1239349-1240341 3.00e-05 49_[+3(5.80e-08)]_30 chrXVI:828984-829353 3.08e-01 100 chrXIII:851844-852148 5.11e-01 100 chrVII:592111-592604 7.59e-01 100 chrVII:412227-412575 6.18e-01 100 chrXII:64290-64652 1.11e-01 100 chrIV:562904-563092 2.20e-02 57_[+3(2.12e-05)]_22 chrIII:64696-65325 7.88e-01 100 chrXVI:451672-453336 2.20e-01 100 chrIV:927552-930376 4.95e-02 25_[+2(3.16e-05)]_49 chrXII:214688-215034 5.32e-04 44_[-3(4.32e-07)]_35 chrIX:231246-232449 2.89e-01 100 chrXIV:664237-666938 8.14e-01 100 chrIV:720587-721615 6.25e-01 100 chrXII:673488-675277 6.13e-01 100 chrIX:197266-198033 8.76e-10 34_[+1(3.43e-11)]_[+3(3.44e-06)]_16 chrII:235005-235974 7.56e-01 100 chrXII:91478-91931 8.56e-01 100 chrXVI:297488-298403 6.71e-01 100 chrVII:405474-405780 8.24e-01 100 chrXV:896622-898397 2.23e-01 100 chrXII:368619-369455 4.35e-01 100 chrVII:857054-857583 1.07e-03 31_[-3(1.92e-07)]_48 chrXV:963394-967780 7.56e-01 100 chrXIII:352096-353142 1.49e-01 49_[+1(9.32e-05)]_22 chrV:77545-79479 3.61e-01 100 chrXVI:622363-622819 2.06e-05 65_[-2(1.40e-08)]_9 chrII:405698-406347 7.38e-08 29_[+1(5.71e-11)]_42 chrIV:541000-542097 1.98e-04 55_[-3(2.13e-08)]_24 chrXV:832260-832953 6.53e-01 100 chrIV:616619-617206 1.60e-03 37_[+3(6.33e-07)]_42 chrXIII:901978-902485 5.92e-01 100 chrVI:213142-213464 2.53e-02 9_[+3(6.22e-06)]_70 chrXII:951041-954770 5.23e-01 100 chrVIII:374831-376566 2.38e-01 100 chrX:651844-651944 9.06e-01 100 chrVII:255164-255773 1.42e-02 56_[+3(6.83e-06)]_23 chrVIII:466843-467302 9.70e-10 9_[+1(1.51e-10)]_10_[+3(1.45e-06)]_\ 31 chrXIII:123002-124233 4.54e-01 100 chrXIII:498873-500772 2.08e-01 100 chrXIV:374646-375108 1.23e-05 40_[+2(4.79e-09)]_34 chrXV:86958-88853 1.29e-03 59_[-3(2.91e-07)]_20 chrVII:362234-364440 4.91e-01 100 chrXVI:771310-772909 3.90e-01 100 chrXIII:290609-291210 2.16e-01 100 chrIV:1243134-1243326 6.26e-01 100 chrXV:760671-761304 9.97e-01 100 chrXIII:431869-432490 4.81e-03 77_[-3(1.45e-06)]_2 chrVII:876167-879013 9.08e-01 100 chrXII:196860-198123 1.73e-01 100 chrX:455180-455280 6.83e-01 100 chrVI:95361-95899 1.79e-01 100 chrXVI:354156-355350 5.00e-01 100 chrV:443034-443326 1.87e-02 32_[-3(7.50e-06)]_47 chrI:130671-131912 6.28e-01 100 chrXIII:24002-25975 4.08e-01 100 chrXII:257600-259557 6.61e-01 100 chrXI:164957-165505 8.56e-01 100 chrV:99860-100324 4.71e-04 12_[-3(2.48e-05)]_39_[-2(9.23e-06)]_\ 2 chrIV:600616-602415 3.50e-01 100 chrVI:226411-227050 2.28e-13 8_[-1(5.71e-12)]_18_[-2(6.92e-09)]_\ 19 chrXIII:554814-556741 8.98e-01 100 chrXIV:253205-254158 1.49e-01 100 chrXIII:272319-272677 4.88e-01 100 chrXII:720595-721448 6.01e-01 100 chrVII:976990-977311 4.29e-01 100 chrXI:258583-260009 1.92e-03 38_[+2(1.34e-06)]_36 chrXII:97182-97905 2.81e-01 100 chrXIII:195966-196282 6.22e-08 59_[-1(4.30e-08)]_12 chrII:563210-564729 7.98e-01 100 chrV:106425-107052 5.15e-01 100 chrXII:636665-640072 5.10e-01 100 chrIV:644113-645357 3.98e-01 100 chrXII:366783-366967 6.89e-01 100 chrVI:222881-223853 1.57e-01 100 chrXVI:519945-520883 9.85e-01 100 chrV:406548-410009 5.85e-01 100 chrXV:31107-31747 4.61e-01 100 chrVII:766148-767205 2.49e-01 100 chrXII:592349-592821 1.39e-05 59_[-2(5.42e-09)]_15 chrXVI:432375-434344 2.49e-01 100 chrXIII:117119-118978 5.55e-01 100 chrXVI:55888-56404 3.25e-01 100 chrVII:1051892-1052243 5.78e-01 100 chrVI:58051-59185 8.66e-01 100 chrXI:109213-110629 2.37e-02 100 chrXVI:172119-174134 2.91e-01 100 chrVII:736213-736845 1.56e-02 66_[-3(2.51e-06)]_13 chrXV:287623-288444 2.05e-03 2_[+3(2.21e-07)]_47_[-3(2.69e-05)]_\ 9 chrVII:616386-617274 3.59e-03 33_[+3(2.29e-05)]_46 chrXVI:339754-341356 3.77e-01 100 chrXII:708041-713435 6.29e-03 28_[-1(3.44e-05)]_43 chrXVI:821608-822233 5.23e-03 31_[+3(1.15e-06)]_48 chrII:350559-351023 5.59e-01 100 chrV:284716-285587 6.23e-01 100 chrXII:201654-202713 5.94e-01 100 chrXVI:627244-627569 9.22e-01 100 chrXIII:221315-223851 3.21e-01 100 chrXII:447996-448983 3.86e-02 5_[-3(3.38e-05)]_74 chrXVI:770158-771097 6.83e-01 100 chrIII:853-1048 8.10e-01 100 chrXVI:901210-902224 6.82e-01 100 chrXIII:225838-227986 2.12e-01 100 chrI:71606-73719 9.00e-01 100 chrXIII:287996-290000 9.16e-01 100 chrIV:1080515-1081759 8.15e-02 100 chrV:260213-261284 3.36e-01 100 chrV:434384-434745 7.71e-08 27_[-1(2.84e-09)]_44 chrIV:1465379-1468502 8.39e-01 100 chrXVI:927792-928032 8.38e-02 100 chrXV:679478-680907 1.88e-02 100 chrXIII:91217-92105 7.63e-01 100 chrIV:1012723-1013712 1.68e-01 100 chrXV:514201-514774 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chrXIV:560137-560911 8.65e-01 100 chrXI:219611-220082 6.94e-01 100 chrV:61003-62151 5.63e-03 7_[+3(6.83e-06)]_72 chrVIII:475510-475863 2.04e-07 70_[-1(1.76e-11)]_1 chrXIV:632448-632882 7.14e-07 27_[+1(6.39e-09)]_[+3(8.33e-05)]_23 chrXV:407635-408238 6.66e-01 100 chrXIII:321012-321267 4.39e-06 58_[-1(5.86e-09)]_13 chrVI:191413-191764 2.37e-07 50_[-2(1.81e-11)]_24 chrXIII:251747-253005 2.62e-01 100 chrXV:722824-725623 9.17e-01 100 chrXIII:667531-668132 2.01e-01 100 chrX:204549-204649 1.35e-07 31_[+1(5.71e-11)]_40 chrVIII:145682-146445 8.82e-01 100 chrXV:571731-572120 7.38e-01 100 chrXIII:267670-268259 8.95e-01 100 chrX:523920-524020 4.14e-01 100 chrX:75845-75945 3.67e-01 100 chrXI:612580-613606 3.08e-02 100 chrXIII:557400-558578 8.11e-01 100 chrV:266183-268271 1.36e-01 100 chrXI:248148-248669 9.02e-02 100 chrIV:520419-521167 9.52e-01 100 chrXII:837671-839436 3.89e-01 100 chrXV:671075-672275 8.95e-02 100 chrIII:78301-80411 8.55e-01 100 chrXII:975759-976159 4.37e-01 100 chrVII:1061843-1063140 1.71e-01 100 chrXVI:654021-656227 3.94e-05 3_[-3(3.84e-09)]_76 chrXI:490783-491322 2.81e-08 8_[+1(1.90e-10)]_6_[+3(2.29e-05)]_\ 36 chrXVI:569284-569753 4.71e-01 100 chrVII:610441-611505 1.77e-02 27_[+1(2.47e-05)]_44 chrVIII:504096-505640 7.24e-01 100 chrVIII:381451-382815 2.48e-01 100 chrXIII:701685-703324 8.64e-01 100 chrVII:516659-518110 7.74e-01 100 chrXIII:424530-426026 4.67e-02 100 chrIII:17075-17833 7.84e-01 100 chrIV:427612-428715 2.40e-01 100 chrII:9532-9984 4.43e-01 100 chrXIV:771706-772461 4.63e-01 100 chrVII:695375-697066 5.50e-01 100 chrXII:704292-704610 2.39e-05 56_[+3(2.07e-09)]_23 chrXVI:303055-304407 6.05e-01 100 chrXV:877228-878079 2.98e-01 100 chrIV:1434054-1435961 9.63e-01 100 chrVI:219957-221483 3.14e-02 100 chrXIV:568083-568617 3.68e-04 3_[-3(1.08e-07)]_76 chrVIII:103850-105565 1.81e-01 100 chrXVI:308584-309947 8.81e-03 6_[+3(3.81e-06)]_73 chrVII:794053-794514 2.67e-01 100 chrXVI:370913-372979 1.56e-01 100 chrXII:728285-728581 2.52e-01 100 chrV:322039-323332 9.23e-01 100 chrXII:568089-570996 6.95e-01 100 chrIV:768335-769082 5.16e-01 100 chrV:288098-288838 4.73e-06 25_[-1(2.56e-08)]_46 chrV:235038-237171 9.86e-02 8_[-2(9.07e-05)]_66 chrII:197279-197801 1.19e-12 2_[+2(2.52e-10)]_19_[+1(4.17e-10)]_\ 24 chrXV:677931-678888 4.34e-03 23_[-3(9.11e-07)]_56 chrXIV:391927-392972 4.08e-01 100 chrXIV:95983-96432 6.30e-01 100 chrV:249806-251391 4.03e-01 100 chrXII:793808-796759 5.41e-01 100 chrIV:1095000-1095611 6.74e-01 100 chrXIII:609169-609749 6.12e-01 100 chrIII:151144-151491 1.13e-13 17_[-1(5.71e-12)]_18_[-2(3.28e-09)]_\ 10 chrII:299662-300258 9.93e-01 100 chrVIII:411010-411678 8.85e-01 100 chrIV:1150729-1151191 6.70e-09 6_[-2(5.27e-12)]_68 chrII:254629-255890 3.80e-01 100 chrVII:702866-704435 1.11e-01 79_[-3(7.81e-05)] chrXI:427425-427608 4.84e-01 100 chrXV:594317-594682 6.45e-01 100 chrIII:287797-288349 4.98e-01 100 chrXV:472685-473555 4.59e-01 100 chrX:663355-663455 2.41e-01 100 chrX:517658-517758 3.41e-06 48_[-2(2.18e-08)]_26 chrXV:487451-487748 1.00e+00 100 chrVII:959821-961593 2.51e-01 100 chrVII:31151-31812 3.85e-02 47_[-3(1.80e-05)]_32 chrV:363615-364489 4.33e-01 100 chrVII:345874-346714 6.22e-01 100 chrVI:180615-181214 9.54e-01 100 chrX:159596-159696 3.12e-01 100 chrXIII:510946-512328 7.70e-03 1_[+3(2.51e-06)]_78 chrXIII:412536-412700 6.21e-01 100 chrXI:333742-335021 1.78e-01 100 chrVII:774141-774598 2.54e-07 28_[+2(9.72e-10)]_46 chrII:62818-63463 2.46e-01 100 chrX:683678-683778 7.88e-01 100 chrVII:968871-969415 5.94e-01 100 chrVI:157906-158314 8.10e-01 100 chrIV:443187-445627 7.40e-01 100 chrXIV:24044-27591 4.00e-01 100 chrXII:783934-784509 2.94e-01 100 chrII:477165-477810 5.81e-04 71_[+3(1.44e-07)]_8 chrXIV:48220-48801 4.75e-01 100 chrXIV:187061-187564 9.81e-01 100 chrXV:903891-906391 2.43e-01 100 chrI:65806-67889 3.81e-02 100 chrII:88903-89496 2.14e-02 73_[+3(1.18e-05)]_6 chrIX:307685-308459 8.49e-01 100 chrX:531616-531716 2.13e-11 [+1(1.89e-13)]_2_[+3(1.08e-05)]_48 chrXIII:507159-509485 4.15e-01 100 chrXV:479447-479760 4.68e-01 100 chrVII:56383-58892 4.71e-04 44_[-2(1.24e-06)]_30 chrXV:712483-713081 4.76e-01 100 chrXVI:701864-702324 8.27e-01 100 chrVIII:281487-283186 5.19e-04 61_[-3(8.08e-07)]_18 chrXVI:878741-880567 7.96e-01 100 chrXII:737775-738496 5.81e-01 100 chrVII:23844-25422 9.04e-01 100 chrXVI:581849-582451 2.70e-09 4_[+1(5.71e-12)]_67 chrII:391130-392303 7.97e-01 100 chrXI:430653-431240 8.03e-01 100 chrXIII:861157-861686 4.25e-03 5_[+3(6.83e-06)]_74 chrVIII:451189-453013 2.87e-01 100 chrXII:1028818-1030336 6.84e-04 47_[-3(2.51e-06)]_32 chrV:441846-442654 9.56e-01 100 chrXIV:302587-304067 3.76e-01 100 chrXIV:102611-103423 9.84e-01 100 chrV:431032-431937 5.79e-01 100 chrIX:77519-77780 9.42e-01 100 chrIII:27951-31222 9.18e-01 100 chrXIV:510510-512297 7.59e-01 100 chrXIII:549848-551270 1.17e-04 26_[-1(4.62e-08)]_45 chrIV:1075342-1075757 3.84e-01 100 chrXIII:170184-171364 2.97e-01 100 chrXII:672040-672836 2.04e-01 100 chrIV:555366-556657 8.12e-02 100 chrXII:253740-255339 7.04e-02 49_[+3(4.53e-05)]_30 chrVI:101184-101671 1.50e-06 6_[+1(4.30e-08)]_36_[+1(3.74e-10)] chrXV:1016165-1017561 4.35e-01 100 chrXV:80311-81493 5.17e-01 100 chrVII:1056898-1058756 6.85e-01 100 chrVII:541748-542157 1.13e-01 100 chrIV:1449869-1451837 6.69e-02 59_[+3(2.12e-05)]_20 chrVII:930563-931170 2.79e-01 100 chrX:520211-520311 6.15e-03 32_[-2(1.24e-06)]_42 chrIV:519680-520240 1.06e-03 1_[+3(4.92e-07)]_78 chrIV:980759-981131 3.23e-02 1_[+3(1.52e-05)]_78 chrXVI:241978-243303 3.69e-02 100 chrXIII:670915-674837 4.76e-01 100 chrXVI:247041-248785 3.08e-01 100 chrVII:319260-320111 4.75e-01 100 chrX:115862-115962 8.44e-01 100 chrVII:479099-482992 7.48e-01 100 chrII:347428-347919 1.84e-02 33_[+1(2.09e-05)]_38 chrXV:409081-409963 3.44e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************