******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--PDR8/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71790-73289 1.0000 100 chrI:81889-82311 1.0000 100 chrI:138969-139369 1.0000 100 chrI:166169-166566 1.0000 100 chrI:181126-181610 1.0000 100 chrI:182057-183170 1.0000 100 chrII:9445-10015 1.0000 100 chrII:36227-36597 1.0000 100 chrII:44203-45349 1.0000 100 chrII:60810-61340 1.0000 100 chrII:89672-90181 1.0000 100 chrII:165085-165422 1.0000 100 chrII:167823-169386 1.0000 100 chrII:181007-181954 1.0000 100 chrII:197293-197856 1.0000 100 chrII:226971-227372 1.0000 100 chrII:266201-266664 1.0000 100 chrII:326484-327056 1.0000 100 chrII:332177-332916 1.0000 100 chrII:347425-347897 1.0000 100 chrII:350618-351050 1.0000 100 chrII:405680-406237 1.0000 100 chrII:415495-416125 1.0000 100 chrII:416324-416635 1.0000 100 chrII:476827-477755 1.0000 100 chrII:592870-594330 1.0000 100 chrII:604071-607131 1.0000 100 chrII:642848-643261 1.0000 100 chrII:644930-645403 1.0000 100 chrIII:68-632 1.0000 100 chrIII:834-1047 1.0000 100 chrIII:82385-82659 1.0000 100 chrIII:90851-91135 1.0000 100 chrIII:123346-123821 1.0000 100 chrIII:127509-127910 1.0000 100 chrIII:142616-142978 1.0000 100 chrIII:149740-150177 1.0000 100 chrIII:151037-151526 1.0000 100 chrIII:163481-163868 1.0000 100 chrIII:168129-168553 1.0000 100 chrIII:178331-178780 1.0000 100 chrIII:220959-223099 1.0000 100 chrIII:227763-228238 1.0000 100 chrIII:268770-269044 1.0000 100 chrIII:295298-295864 1.0000 100 chrIII:316222-316596 1.0000 100 chrIV:7-228 1.0000 100 chrIV:83323-84092 1.0000 100 chrIV:117148-117872 1.0000 100 chrIV:130235-131046 1.0000 100 chrIV:216569-217807 1.0000 100 chrIV:221730-222332 1.0000 100 chrIV:229278-230500 1.0000 100 chrIV:307999-308413 1.0000 100 chrIV:321637-321963 1.0000 100 chrIV:341014-341842 1.0000 100 chrIV:355702-356911 1.0000 100 chrIV:358036-358471 1.0000 100 chrIV:359357-359811 1.0000 100 chrIV:359974-360178 1.0000 100 chrIV:409923-410824 1.0000 100 chrIV:411054-411636 1.0000 100 chrIV:433852-434881 1.0000 100 chrIV:437559-438126 1.0000 100 chrIV:465188-465524 1.0000 100 chrIV:488414-489081 1.0000 100 chrIV:490602-493475 1.0000 100 chrIV:519654-519905 1.0000 100 chrIV:520742-521175 1.0000 100 chrIV:538992-539397 1.0000 100 chrIV:568715-569631 1.0000 100 chrIV:579053-580463 1.0000 100 chrIV:600852-601985 1.0000 100 chrIV:619732-620202 1.0000 100 chrIV:644359-645370 1.0000 100 chrIV:667756-668261 1.0000 100 chrIV:757503-758286 1.0000 100 chrIV:802568-803002 1.0000 100 chrIV:835083-835566 1.0000 100 chrIV:835772-836312 1.0000 100 chrIV:884251-884581 1.0000 100 chrIV:946129-946632 1.0000 100 chrIV:980599-981161 1.0000 100 chrIV:992719-993228 1.0000 100 chrIV:1013408-1013973 1.0000 100 chrIV:1016972-1017483 1.0000 100 chrIV:1075294-1075751 1.0000 100 chrIV:1094935-1095653 1.0000 100 chrIV:1150729-1151159 1.0000 100 chrIV:1175740-1176073 1.0000 100 chrIV:1201542-1202037 1.0000 100 chrIV:1256308-1256578 1.0000 100 chrIV:1256747-1257295 1.0000 100 chrIV:1300916-1301347 1.0000 100 chrIV:1305403-1305803 1.0000 100 chrIV:1351908-1353063 1.0000 100 chrIV:1354871-1356290 1.0000 100 chrIV:1359429-1360811 1.0000 100 chrIV:1401021-1402546 1.0000 100 chrIV:1450714-1451830 1.0000 100 chrIV:1461511-1461850 1.0000 100 chrIX:68260-68522 1.0000 100 chrIX:69153-69562 1.0000 100 chrIX:99650-100023 1.0000 100 chrIX:128154-129999 1.0000 100 chrIX:130347-133799 1.0000 100 chrIX:174894-175209 1.0000 100 chrIX:183285-183706 1.0000 100 chrIX:197310-197743 1.0000 100 chrIX:210653-211076 1.0000 100 chrIX:248582-249328 1.0000 100 chrIX:254233-254567 1.0000 100 chrIX:257370-258219 1.0000 100 chrIX:265123-267708 1.0000 100 chrIX:300068-300491 1.0000 100 chrIX:315499-316608 1.0000 100 chrIX:316883-317902 1.0000 100 chrIX:322394-324393 1.0000 100 chrIX:325739-326310 1.0000 100 chrIX:336065-336631 1.0000 100 chrIX:370231-370621 1.0000 100 chrIX:382522-383046 1.0000 100 chrIX:391094-392508 1.0000 100 chrV:53498-53952 1.0000 100 chrV:61079-62145 1.0000 100 chrV:85114-87139 1.0000 100 chrV:99920-100302 1.0000 100 chrV:117644-118314 1.0000 100 chrV:130838-131360 1.0000 100 chrV:134809-136065 1.0000 100 chrV:138456-139967 1.0000 100 chrV:140198-140912 1.0000 100 chrV:176902-177433 1.0000 100 chrV:249782-250504 1.0000 100 chrV:288129-289032 1.0000 100 chrV:305819-307180 1.0000 100 chrV:311699-312279 1.0000 100 chrV:354704-355382 1.0000 100 chrV:362203-362476 1.0000 100 chrV:395905-396590 1.0000 100 chrV:422810-423505 1.0000 100 chrV:431035-431956 1.0000 100 chrV:434384-434978 1.0000 100 chrV:435593-436012 1.0000 100 chrV:438533-438940 1.0000 100 chrV:441783-442727 1.0000 100 chrV:443057-443361 1.0000 100 chrV:469207-469769 1.0000 100 chrV:487082-487615 1.0000 100 chrV:492206-492568 1.0000 100 chrV:551040-551539 1.0000 100 chrVI:53231-54369 1.0000 100 chrVI:64251-65371 1.0000 100 chrVI:95478-95923 1.0000 100 chrVI:100986-102472 1.0000 100 chrVI:136829-137034 1.0000 100 chrVI:137234-137705 1.0000 100 chrVI:157844-158223 1.0000 100 chrVI:162023-162389 1.0000 100 chrVI:167249-167647 1.0000 100 chrVI:180610-181255 1.0000 100 chrVI:191138-191770 1.0000 100 chrVI:210432-211106 1.0000 100 chrVI:220507-223031 1.0000 100 chrVI:223289-224153 1.0000 100 chrVI:226613-227327 1.0000 100 chrVII:261-1109 1.0000 100 chrVII:24096-25440 1.0000 100 chrVII:67192-67955 1.0000 100 chrVII:110281-110787 1.0000 100 chrVII:115318-115721 1.0000 100 chrVII:122052-122474 1.0000 100 chrVII:148219-149510 1.0000 100 chrVII:185541-185917 1.0000 100 chrVII:205323-205754 1.0000 100 chrVII:254112-254684 1.0000 100 chrVII:277018-277396 1.0000 100 chrVII:277608-278647 1.0000 100 chrVII:287180-287675 1.0000 100 chrVII:310393-312171 1.0000 100 chrVII:319218-320106 1.0000 100 chrVII:328391-329170 1.0000 100 chrVII:364892-366663 1.0000 100 chrVII:371208-371522 1.0000 100 chrVII:401434-401621 1.0000 100 chrVII:405460-405944 1.0000 100 chrVII:411662-412595 1.0000 100 chrVII:422897-423369 1.0000 100 chrVII:438574-438929 1.0000 100 chrVII:440570-440978 1.0000 100 chrVII:479883-482680 1.0000 100 chrVII:531387-531820 1.0000 100 chrVII:533818-535194 1.0000 100 chrVII:541710-542149 1.0000 100 chrVII:544404-544871 1.0000 100 chrVII:555165-555890 1.0000 100 chrVII:561461-561730 1.0000 100 chrVII:648751-649356 1.0000 100 chrVII:661545-661941 1.0000 100 chrVII:700438-701221 1.0000 100 chrVII:706698-707193 1.0000 100 chrVII:726377-726795 1.0000 100 chrVII:730959-731408 1.0000 100 chrVII:736192-737132 1.0000 100 chrVII:738898-739531 1.0000 100 chrVII:774116-774745 1.0000 100 chrVII:779401-779934 1.0000 100 chrVII:788098-788754 1.0000 100 chrVII:794045-794569 1.0000 100 chrVII:823339-823726 1.0000 100 chrVII:824084-825263 1.0000 100 chrVII:828444-828979 1.0000 100 chrVII:845459-846287 1.0000 100 chrVII:856742-857686 1.0000 100 chrVII:876161-876530 1.0000 100 chrVII:878574-879056 1.0000 100 chrVII:882789-883800 1.0000 100 chrVII:930862-931621 1.0000 100 chrVII:1000325-1000594 1.0000 100 chrVII:1003598-1004428 1.0000 100 chrVIII:34601-36173 1.0000 100 chrVIII:62505-62916 1.0000 100 chrVIII:74778-75884 1.0000 100 chrVIII:85152-85375 1.0000 100 chrVIII:103621-104688 1.0000 100 chrVIII:115941-116379 1.0000 100 chrVIII:125895-126319 1.0000 100 chrVIII:132502-133115 1.0000 100 chrVIII:134121-134705 1.0000 100 chrVIII:143925-146458 1.0000 100 chrVIII:148921-149474 1.0000 100 chrVIII:173437-175986 1.0000 100 chrVIII:237286-238140 1.0000 100 chrVIII:296722-297219 1.0000 100 chrVIII:358273-358761 1.0000 100 chrVIII:382888-383354 1.0000 100 chrVIII:388676-389007 1.0000 100 chrVIII:451366-453048 1.0000 100 chrVIII:466822-467218 1.0000 100 chrVIII:475489-475912 1.0000 100 chrVIII:505799-506230 1.0000 100 chrVIII:554390-554750 1.0000 100 chrVIII:555086-555463 1.0000 100 chrVIII:555727-556927 1.0000 100 chrVIII:562337-562596 1.0000 100 chrX:58998-59370 1.0000 100 chrX:73102-74599 1.0000 100 chrX:74915-75717 1.0000 100 chrX:90026-90423 1.0000 100 chrX:115703-116283 1.0000 100 chrX:120447-121901 1.0000 100 chrX:157445-157913 1.0000 100 chrX:196392-197448 1.0000 100 chrX:204555-204986 1.0000 100 chrX:233404-234145 1.0000 100 chrX:354006-354487 1.0000 100 chrX:355186-355737 1.0000 100 chrX:374201-374820 1.0000 100 chrX:378210-378605 1.0000 100 chrX:390864-391326 1.0000 100 chrX:391823-392114 1.0000 100 chrX:396604-396952 1.0000 100 chrX:414767-415236 1.0000 100 chrX:415787-416239 1.0000 100 chrX:422672-423376 1.0000 100 chrX:424276-424721 1.0000 100 chrX:517652-518131 1.0000 100 chrX:523873-524424 1.0000 100 chrX:531560-532432 1.0000 100 chrX:538035-538911 1.0000 100 chrX:540761-542488 1.0000 100 chrX:542795-543267 1.0000 100 chrX:545441-545746 1.0000 100 chrX:607889-608186 1.0000 100 chrX:617699-618148 1.0000 100 chrX:651029-651611 1.0000 100 chrX:663756-664350 1.0000 100 chrX:703247-703669 1.0000 100 chrX:745064-745749 1.0000 100 chrXI:1-186 1.0000 100 chrXI:775-1089 1.0000 100 chrXI:46713-46996 1.0000 100 chrXI:67794-68050 1.0000 100 chrXI:74410-74801 1.0000 100 chrXI:83975-84430 1.0000 100 chrXI:107600-110140 1.0000 100 chrXI:140828-141452 1.0000 100 chrXI:158187-159303 1.0000 100 chrXI:159553-159904 1.0000 100 chrXI:162332-162754 1.0000 100 chrXI:202478-203295 1.0000 100 chrXI:219572-220115 1.0000 100 chrXI:283360-284473 1.0000 100 chrXI:302709-303209 1.0000 100 chrXI:307901-308458 1.0000 100 chrXI:312880-314001 1.0000 100 chrXI:326447-327527 1.0000 100 chrXI:379678-379917 1.0000 100 chrXI:382173-382458 1.0000 100 chrXI:431359-431687 1.0000 100 chrXI:457970-459385 1.0000 100 chrXI:490770-491316 1.0000 100 chrXI:512078-513584 1.0000 100 chrXI:517783-518070 1.0000 100 chrXI:519510-520641 1.0000 100 chrXI:578742-579338 1.0000 100 chrXI:618742-619288 1.0000 100 chrXI:666608-666802 1.0000 100 chrXII:47510-49229 1.0000 100 chrXII:92408-92737 1.0000 100 chrXII:167767-168233 1.0000 100 chrXII:198701-199739 1.0000 100 chrXII:201683-202674 1.0000 100 chrXII:214638-215070 1.0000 100 chrXII:232188-234118 1.0000 100 chrXII:241635-243427 1.0000 100 chrXII:261310-263938 1.0000 100 chrXII:366030-367008 1.0000 100 chrXII:369690-370106 1.0000 100 chrXII:370617-370876 1.0000 100 chrXII:374207-374650 1.0000 100 chrXII:424186-424733 1.0000 100 chrXII:426911-427454 1.0000 100 chrXII:448515-448963 1.0000 100 chrXII:459604-460694 1.0000 100 chrXII:498307-500173 1.0000 100 chrXII:513231-517276 1.0000 100 chrXII:521028-522463 1.0000 100 chrXII:592295-592821 1.0000 100 chrXII:605121-605621 1.0000 100 chrXII:628159-628637 1.0000 100 chrXII:636758-639868 1.0000 100 chrXII:656841-657203 1.0000 100 chrXII:673504-674365 1.0000 100 chrXII:687681-687912 1.0000 100 chrXII:713150-713977 1.0000 100 chrXII:730933-732346 1.0000 100 chrXII:734607-734969 1.0000 100 chrXII:781140-781873 1.0000 100 chrXII:783878-784570 1.0000 100 chrXII:793776-794133 1.0000 100 chrXII:796396-797818 1.0000 100 chrXII:805804-806808 1.0000 100 chrXII:818497-820401 1.0000 100 chrXII:838065-839235 1.0000 100 chrXII:873907-877174 1.0000 100 chrXII:897514-898977 1.0000 100 chrXII:921716-923542 1.0000 100 chrXII:932098-932492 1.0000 100 chrXII:951169-953172 1.0000 100 chrXII:962846-963254 1.0000 100 chrXII:975771-976197 1.0000 100 chrXII:1018131-1019600 1.0000 100 chrXII:1028201-1028582 1.0000 100 chrXII:1051968-1052224 1.0000 100 chrXIII:5445-5662 1.0000 100 chrXIII:91299-92256 1.0000 100 chrXIII:131635-132089 1.0000 100 chrXIII:145909-147205 1.0000 100 chrXIII:168242-169254 1.0000 100 chrXIII:195956-196305 1.0000 100 chrXIII:225114-226556 1.0000 100 chrXIII:258985-259384 1.0000 100 chrXIII:290570-291147 1.0000 100 chrXIII:296596-298827 1.0000 100 chrXIII:302873-303068 1.0000 100 chrXIII:320991-321525 1.0000 100 chrXIII:352083-353260 1.0000 100 chrXIII:362929-363999 1.0000 100 chrXIII:372198-372657 1.0000 100 chrXIII:379101-379675 1.0000 100 chrXIII:420338-420874 1.0000 100 chrXIII:463369-463861 1.0000 100 chrXIII:480406-480834 1.0000 100 chrXIII:499455-500638 1.0000 100 chrXIII:504906-505189 1.0000 100 chrXIII:550239-551823 1.0000 100 chrXIII:552243-553202 1.0000 100 chrXIII:557478-558408 1.0000 100 chrXIII:572631-573128 1.0000 100 chrXIII:586291-586913 1.0000 100 chrXIII:711457-712865 1.0000 100 chrXIII:732018-732450 1.0000 100 chrXIII:747338-748153 1.0000 100 chrXIII:754391-755100 1.0000 100 chrXIII:759777-761265 1.0000 100 chrXIII:768207-768458 1.0000 100 chrXIII:808072-808536 1.0000 100 chrXIII:837743-838265 1.0000 100 chrXIII:873420-874012 1.0000 100 chrXIV:6615-6999 1.0000 100 chrXIV:63099-64465 1.0000 100 chrXIV:95997-96473 1.0000 100 chrXIV:102565-103129 1.0000 100 chrXIV:104580-105060 1.0000 100 chrXIV:241369-242072 1.0000 100 chrXIV:302723-303737 1.0000 100 chrXIV:330411-331114 1.0000 100 chrXIV:374668-375104 1.0000 100 chrXIV:442792-443245 1.0000 100 chrXIV:444207-444803 1.0000 100 chrXIV:493957-495973 1.0000 100 chrXIV:499263-500667 1.0000 100 chrXIV:518052-519145 1.0000 100 chrXIV:525066-525295 1.0000 100 chrXIV:546512-547626 1.0000 100 chrXIV:560207-560922 1.0000 100 chrXIV:568051-568979 1.0000 100 chrXIV:569722-570103 1.0000 100 chrXIV:602116-602549 1.0000 100 chrXIV:631679-632111 1.0000 100 chrXIV:632413-632880 1.0000 100 chrXIV:725738-726392 1.0000 100 chrXIV:783744-784324 1.0000 100 chrXV:29258-30885 1.0000 100 chrXV:79765-80139 1.0000 100 chrXV:92807-94794 1.0000 100 chrXV:109558-110004 1.0000 100 chrXV:110858-111199 1.0000 100 chrXV:113577-113883 1.0000 100 chrXV:159184-160132 1.0000 100 chrXV:160322-160536 1.0000 100 chrXV:161117-161763 1.0000 100 chrXV:168094-168339 1.0000 100 chrXV:216288-216677 1.0000 100 chrXV:226438-226903 1.0000 100 chrXV:228132-228591 1.0000 100 chrXV:253794-254655 1.0000 100 chrXV:274469-274994 1.0000 100 chrXV:281990-283382 1.0000 100 chrXV:286377-288422 1.0000 100 chrXV:300911-302351 1.0000 100 chrXV:340133-340587 1.0000 100 chrXV:353907-354322 1.0000 100 chrXV:438467-439043 1.0000 100 chrXV:444648-446233 1.0000 100 chrXV:446407-447074 1.0000 100 chrXV:464290-464808 1.0000 100 chrXV:487430-487812 1.0000 100 chrXV:504963-505491 1.0000 100 chrXV:571727-572128 1.0000 100 chrXV:594308-594655 1.0000 100 chrXV:639157-639473 1.0000 100 chrXV:663483-664098 1.0000 100 chrXV:678678-679170 1.0000 100 chrXV:710119-710437 1.0000 100 chrXV:758939-759433 1.0000 100 chrXV:779689-781231 1.0000 100 chrXV:853656-854773 1.0000 100 chrXV:866402-867397 1.0000 100 chrXV:901428-901658 1.0000 100 chrXV:925215-925393 1.0000 100 chrXV:968116-968404 1.0000 100 chrXV:976376-976642 1.0000 100 chrXV:978808-979148 1.0000 100 chrXV:980147-981023 1.0000 100 chrXV:1004031-1004383 1.0000 100 chrXV:1025738-1026063 1.0000 100 chrXV:1028178-1029296 1.0000 100 chrXV:1091131-1091290 1.0000 100 chrXVI:55854-56433 1.0000 100 chrXVI:75287-76861 1.0000 100 chrXVI:188238-189237 1.0000 100 chrXVI:202864-203191 1.0000 100 chrXVI:210053-210471 1.0000 100 chrXVI:279986-280236 1.0000 100 chrXVI:281580-281938 1.0000 100 chrXVI:302673-302989 1.0000 100 chrXVI:303154-304120 1.0000 100 chrXVI:338447-339284 1.0000 100 chrXVI:378650-378998 1.0000 100 chrXVI:406178-406643 1.0000 100 chrXVI:432560-434114 1.0000 100 chrXVI:435630-436176 1.0000 100 chrXVI:519734-520534 1.0000 100 chrXVI:560071-560483 1.0000 100 chrXVI:572172-572598 1.0000 100 chrXVI:581850-582279 1.0000 100 chrXVI:622312-623108 1.0000 100 chrXVI:627257-628264 1.0000 100 chrXVI:648744-649491 1.0000 100 chrXVI:666241-666499 1.0000 100 chrXVI:689401-689873 1.0000 100 chrXVI:699022-700682 1.0000 100 chrXVI:731911-732832 1.0000 100 chrXVI:744079-744534 1.0000 100 chrXVI:768625-769489 1.0000 100 chrXVI:775654-776157 1.0000 100 chrXVI:794458-794833 1.0000 100 chrXVI:794996-795156 1.0000 100 chrXVI:810573-812272 1.0000 100 chrXVI:819351-819847 1.0000 100 chrXVI:856745-857169 1.0000 100 chrXVI:860169-860852 1.0000 100 chrXVI:880181-880574 1.0000 100 chrXVI:918845-919401 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--PDR8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--PDR8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--PDR8/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 496 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 49600 N= 496 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.297 C 0.203 G 0.203 T 0.297 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--PDR8/background): A 0.302 C 0.198 G 0.198 T 0.302 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAWYGVYCHCDMSSGGRNTCGAACC MEME-1 width = 30 sites = 76 llr = 1541 E-value = 1.2e-329 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCHCDMSSGGRNTCGAACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 88989876113112234:13:54:::aa:: pos.-specific C 11:1::::4:45546:444:::2:8:::a8 probability G :::1:111:73121242457a52::a:::: matrix T 1111112342142313:2::::2a3::::2 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * * **** Relative 1.4 ** ******* Entropy 1.2 * * ** ******* (29.3 bits) 0.9 ** ** * *** ******* 0.7 ******* * **** ******* 0.5 ********** ** ******** ******* 0.2 ************* ******** ******* 0.0 ------------------------------ Multilevel AAAAAAAATGCCCCCGCCGGGAATCGAACC consensus TTCTAT T AAGCA GT T T sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCHCDMSSGGRNTCGAACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:551040-551539 + 38 2.12e-14 TACGATTTTC AAAAAAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrV:443057-443361 + 35 1.71e-13 AGATTTTCAA AAAAAATATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXII:1051968-1052224 + 17 6.53e-13 TTAAAGTAAA AAAAATAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrII:197293-197856 - 22 1.05e-12 ATTTGAATTG CAAAAAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXVI:819351-819847 - 32 1.22e-12 ACCTGGGTCA AAAATAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrIV:667756-668261 + 41 1.65e-12 GAGGAGAAAA AATAAAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrV:134809-136065 + 30 2.57e-12 ATTTTCGGAG AAAAAGAAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrIII:151037-151526 + 45 2.57e-12 TTTTCCAAGA AAAAAGAAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXIII:463369-463861 - 39 5.23e-12 CTGGTCTGAT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrX:204555-204986 - 65 5.23e-12 GGGCCA AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrIX:336065-336631 + 43 5.23e-12 CAGTTATGGT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXIII:480406-480834 + 43 6.00e-12 TGAATCTTCA AAAAAAGAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrVII:828444-828979 + 54 6.00e-12 TTTTTATTGC AAAAAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrVII:185541-185917 + 27 6.00e-12 TTTGAGCCTA AAAAAGATAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrIV:1351908-1353063 + 23 6.00e-12 GTTGTTTAAA AAAAAGATAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrI:166169-166566 - 1 1.17e-11 TGGATTAACA AAAAAATTTGGACGCAACCGGAATCGAACC chrXIV:632413-632880 - 55 1.73e-11 CTGAAATAAG AAAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXI:307901-308458 + 7 1.73e-11 ACGGAA AAAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrV:438533-438940 - 66 1.73e-11 CGAAA AAAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrVII:738898-739531 - 10 1.96e-11 TGCATTCTAA AAAGTAAATGGTCTCTAGCGGGATCGAACC GCTGATCCC chrV:130838-131360 + 25 1.96e-11 TGAGCGGGGG AAAAAAATAGGTCTTACCCGGATTCGAACC GGGGTTGTTC chrXII:426911-427454 - 50 2.22e-11 TAGAAGCTTA AAAAAATTCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXII:374207-374650 - 28 2.22e-11 TTGTCGGAGC AAAAAAATCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXII:214638-215070 + 71 2.52e-11 ATAAAAGTAA AAAATAAATGGACGCAACCGGAATCGAACC chrVII:401434-401621 + 42 2.52e-11 AAAACTTTCA AAAAAATACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrIV:1256747-1257295 + 29 5.20e-11 AAAAAATTGC ACAAAAAATGCGGAAGCCGGGAATCGAACC CGGGCCCCAT chrX:414767-415236 - 66 6.56e-11 AGAAA AAAATATTAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXI:490770-491316 - 26 8.25e-11 TATAAAAGTA AAAAAATTCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXIII:258985-259384 + 16 9.24e-11 TCAAGAGGCA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXIII:131635-132089 + 5 9.24e-11 GAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrX:374201-374820 + 38 9.24e-11 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrX:355186-355737 - 13 9.24e-11 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrII:405680-406237 - 20 9.24e-11 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrII:226971-227372 - 14 9.24e-11 TTACTGTCCA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXIII:372198-372657 + 60 1.03e-10 GATAAAGTGC TAAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXVI:435630-436176 + 32 1.16e-10 TTCTTTGGAA AAAAAGAAAGCTCGCACTCAGGATCGAACT AAGGACCAAC chrXIII:572631-573128 + 46 1.44e-10 AAGTTTTGAA AAAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrV:176902-177433 - 32 1.44e-10 GTAGCCATCA AAAAAGTACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrIV:1016972-1017483 + 22 1.44e-10 TAGAAAATAA AAAAGAAACTCCGAAGCGGGGAGTCGAACC CCGGTCTCCA chrIII:295298-295864 - 4 1.61e-10 GAATAACGTG ATAAAAAATGCTTCCAATCGGATTTGAACC GAT chrII:266201-266664 - 47 1.61e-10 TTTCAGTATT CAAAAAAATGCTTCCAATCGGATTTGAACC GATGATCTCC chrXV:976376-976642 - 13 1.79e-10 ATATTAGCAA AAAAATATTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrXIV:95997-96473 + 48 1.99e-10 CAATGTCATC AAAAAATTTGAGCGGTACGAGAATCGAACC CGTGTCCCCA chrVI:137234-137705 + 59 1.99e-10 TGATTTTGAA TAAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrIX:248582-249328 - 5 1.99e-10 AAAAAAATAA AAAAATAACGACACCAGCAGGATTTGAACC AGCG chrX:378210-378605 - 55 2.21e-10 ATTAAAAAAA CAAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXII:975771-976197 + 41 2.46e-10 TAATGCAAAA AAAATAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrIV:619732-620202 + 44 2.46e-10 GAAAAATGTA TAAAAAATCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXV:438467-439043 - 12 2.73e-10 ACTGACAAAA ATAAAGAACTCCTCATAGGGGGCTCGAACC CCTGACATTT chrXV:853656-854773 + 15 4.55e-10 TTGATCAAGC TTAAAAATTGGACGCAACCGGAATCGAACC GATGACCTCT chrXIII:290570-291147 - 43 6.74e-10 ATTTCTTCAA AAAGAAGACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXVI:689401-689873 - 38 7.42e-10 TAATTTCAAA AAATAATACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrVII:774116-774745 - 20 7.42e-10 ATTAAAAGTA AAAAAATTTGGACGAGTCCGGAATCGAACC GGAGACCTCT chrXI:312880-314001 + 3 8.17e-10 AA AAATAAAATGCCATCTCCTAGAATCGAACC AGGGTTTCAT chrIV:437559-438126 - 40 8.17e-10 TTGGGAATAT AAAAATGACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrVIII:134121-134705 - 8 9.87e-10 GTTCATTTTA GCAAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTG chrVII:823339-823726 - 52 9.87e-10 AATGTAATCT TCAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrV:469207-469769 - 71 9.87e-10 . TTAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXII:793776-794133 - 64 1.30e-09 AAAAAAA TGAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXIII:420338-420874 + 24 1.87e-09 TAACGGCTGA GATAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrX:422672-423376 - 14 2.23e-09 TCACAAAAAA AGAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrVII:541710-542149 - 21 2.23e-09 GAGGTAAGAA AAAGAACACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrIII:227763-228238 - 71 2.23e-09 . AAATTAAACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrXV:464290-464808 - 31 2.44e-09 AAATAATTAA AAATAAAAGGGGCGAGCTGGGAATTGAACC CAGGGCCTCT chrVII:730959-731408 - 56 2.44e-09 CTCATTTCAA GCAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXII:592295-592821 + 3 3.16e-09 CA AAAAATAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrII:326484-327056 + 64 3.16e-09 TTAAAAAAAT AAAGAGTTTGATCCAACCGAGGTTCGAACT CGGGATC chrV:487082-487615 + 25 3.74e-09 GAAAAAATAT AACGAATACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXV:710119-710437 - 23 5.20e-09 GATCAAAGGT AAAAAAATTAGCGCCGCTCGGTTTCGATCC GAGGACATCA chrV:492206-492568 + 7 7.16e-09 AAAGAA AAATAATCCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXVI:856745-857169 - 46 9.05e-09 CATAATCAAA AATTAAAATGGACGAGTCCGGAATCGAACC GGAGACCTCT chrXV:663483-664098 + 64 9.05e-09 ATAAAATATT CTTAAAAATGATTTCGCCCAGGATCGAACT GGGGACG chrXV:274469-274994 - 71 1.42e-08 . AAGAAATGCGTCACAGACAGGATTCGAACC TGCGCAGGTA chrIII:123346-123821 + 36 2.89e-08 ACATTGTAAA AACAATGTGGGGCGAGCCGGGACTCGAACC CGGGACCTCC chrXVI:338447-339284 + 25 6.75e-08 AAAAGAAAAA AATAAATTTAGCGCCGCTCGGTTTCGATCC GAGGACATCA chrXI:457970-459385 - 22 8.62e-08 ATAAAAAAAT ATATAATATGGTTGCTAAGAGATTCGAACT CTTGCATCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCHCDMSSGGRNTCGAACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:551040-551539 2.1e-14 37_[+1]_33 chrV:443057-443361 1.7e-13 34_[+1]_36 chrXII:1051968-1052224 6.5e-13 16_[+1]_54 chrII:197293-197856 1e-12 21_[-1]_49 chrXVI:819351-819847 1.2e-12 31_[-1]_39 chrIV:667756-668261 1.7e-12 40_[+1]_30 chrV:134809-136065 2.6e-12 29_[+1]_41 chrIII:151037-151526 2.6e-12 44_[+1]_26 chrXIII:463369-463861 5.2e-12 38_[-1]_32 chrX:204555-204986 5.2e-12 64_[-1]_6 chrIX:336065-336631 5.2e-12 42_[+1]_28 chrXIII:480406-480834 6e-12 42_[+1]_28 chrVII:828444-828979 6e-12 53_[+1]_17 chrVII:185541-185917 6e-12 26_[+1]_44 chrIV:1351908-1353063 6e-12 22_[+1]_48 chrI:166169-166566 1.2e-11 [-1]_70 chrXIV:632413-632880 1.7e-11 54_[-1]_16 chrXI:307901-308458 1.7e-11 6_[+1]_64 chrV:438533-438940 1.7e-11 65_[-1]_5 chrVII:738898-739531 2e-11 9_[-1]_61 chrV:130838-131360 2e-11 24_[+1]_46 chrXII:426911-427454 2.2e-11 49_[-1]_21 chrXII:374207-374650 2.2e-11 27_[-1]_43 chrXII:214638-215070 2.5e-11 70_[+1] chrVII:401434-401621 2.5e-11 41_[+1]_29 chrIV:1256747-1257295 5.2e-11 28_[+1]_42 chrX:414767-415236 6.6e-11 65_[-1]_5 chrXI:490770-491316 8.3e-11 25_[-1]_45 chrXIII:258985-259384 9.2e-11 15_[+1]_55 chrXIII:131635-132089 9.2e-11 4_[+1]_66 chrX:374201-374820 9.2e-11 37_[+1]_33 chrX:355186-355737 9.2e-11 12_[-1]_58 chrII:405680-406237 9.2e-11 19_[-1]_51 chrII:226971-227372 9.2e-11 13_[-1]_57 chrXIII:372198-372657 1e-10 59_[+1]_11 chrXVI:435630-436176 1.2e-10 31_[+1]_39 chrXIII:572631-573128 1.4e-10 45_[+1]_25 chrV:176902-177433 1.4e-10 31_[-1]_39 chrIV:1016972-1017483 1.4e-10 21_[+1]_49 chrIII:295298-295864 1.6e-10 3_[-1]_67 chrII:266201-266664 1.6e-10 46_[-1]_24 chrXV:976376-976642 1.8e-10 12_[-1]_58 chrXIV:95997-96473 2e-10 47_[+1]_23 chrVI:137234-137705 2e-10 58_[+1]_12 chrIX:248582-249328 2e-10 4_[-1]_66 chrX:378210-378605 2.2e-10 54_[-1]_16 chrXII:975771-976197 2.5e-10 40_[+1]_30 chrIV:619732-620202 2.5e-10 43_[+1]_27 chrXV:438467-439043 2.7e-10 11_[-1]_59 chrXV:853656-854773 4.5e-10 14_[+1]_56 chrXIII:290570-291147 6.7e-10 42_[-1]_28 chrXVI:689401-689873 7.4e-10 37_[-1]_33 chrVII:774116-774745 7.4e-10 19_[-1]_51 chrXI:312880-314001 8.2e-10 2_[+1]_68 chrIV:437559-438126 8.2e-10 39_[-1]_31 chrVIII:134121-134705 9.9e-10 7_[-1]_63 chrVII:823339-823726 9.9e-10 51_[-1]_19 chrV:469207-469769 9.9e-10 70_[-1] chrXII:793776-794133 1.3e-09 63_[-1]_7 chrXIII:420338-420874 1.9e-09 23_[+1]_47 chrX:422672-423376 2.2e-09 13_[-1]_57 chrVII:541710-542149 2.2e-09 20_[-1]_50 chrIII:227763-228238 2.2e-09 70_[-1] chrXV:464290-464808 2.4e-09 30_[-1]_40 chrVII:730959-731408 2.4e-09 55_[-1]_15 chrXII:592295-592821 3.2e-09 2_[+1]_68 chrII:326484-327056 3.2e-09 63_[+1]_7 chrV:487082-487615 3.7e-09 24_[+1]_46 chrXV:710119-710437 5.2e-09 22_[-1]_48 chrV:492206-492568 7.2e-09 6_[+1]_64 chrXVI:856745-857169 9e-09 45_[-1]_25 chrXV:663483-664098 9e-09 63_[+1]_7 chrXV:274469-274994 1.4e-08 70_[-1] chrIII:123346-123821 2.9e-08 35_[+1]_35 chrXVI:338447-339284 6.8e-08 24_[+1]_46 chrXI:457970-459385 8.6e-08 21_[-1]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCHCDMSSGGRNTCGAACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAWYGVYCHCDMSSGGRNTCGAACC width=30 seqs=76 chrV:551040-551539 ( 38) AAAAAAAATGGTCTCTAGCGGGATCGAACC 1 chrV:443057-443361 ( 35) AAAAAATATGGTCTCTAGCGGGATCGAACC 1 chrXII:1051968-1052224 ( 17) AAAAATAATGGTCTCTAGCGGGATCGAACC 1 chrII:197293-197856 ( 22) CAAAAAAATGGTCTCTAGCGGGATCGAACC 1 chrXVI:819351-819847 ( 32) AAAATAAATGGTCTCTAGCGGGATCGAACC 1 chrIV:667756-668261 ( 41) AATAAAAATGGTCTCTAGCGGGATCGAACC 1 chrV:134809-136065 ( 30) AAAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrIII:151037-151526 ( 45) AAAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrXIII:463369-463861 ( 39) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrX:204555-204986 ( 65) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrIX:336065-336631 ( 43) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXIII:480406-480834 ( 43) AAAAAAGAAGCCCTGTAGGGGGCTCGAACC 1 chrVII:828444-828979 ( 54) AAAAAAAGCACTCACGATGGGGGTCGAACC 1 chrVII:185541-185917 ( 27) AAAAAGATAGCCCTGTAGGGGGCTCGAACC 1 chrIV:1351908-1353063 ( 23) AAAAAGATAGCCCTGTAGGGGGCTCGAACC 1 chrI:166169-166566 ( 1) AAAAAATTTGGACGCAACCGGAATCGAACC 1 chrXIV:632413-632880 ( 55) AAAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrXI:307901-308458 ( 7) AAAAAAATTGATTTCGCCCAGGATCGAACT 1 chrV:438533-438940 ( 66) AAAAAAATTGATTTCGCCCAGGATCGAACT 1 chrVII:738898-739531 ( 10) AAAGTAAATGGTCTCTAGCGGGATCGAACC 1 chrV:130838-131360 ( 25) AAAAAAATAGGTCTTACCCGGATTCGAACC 1 chrXII:426911-427454 ( 50) AAAAAATTCTCCGCGACGGGGAATTGAACC 1 chrXII:374207-374650 ( 28) AAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrXII:214638-215070 ( 71) AAAATAAATGGACGCAACCGGAATCGAACC 1 chrVII:401434-401621 ( 42) AAAAAATACTCCGATACGGGGAGTCGAACC 1 chrIV:1256747-1257295 ( 29) ACAAAAAATGCGGAAGCCGGGAATCGAACC 1 chrX:414767-415236 ( 66) AAAATATTAGCCCTGTAGGGGGCTCGAACC 1 chrXI:490770-491316 ( 26) AAAAAATTCTTCCCCGCCAGGACTTGAACC 1 chrXIII:258985-259384 ( 16) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrXIII:131635-132089 ( 5) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrX:374201-374820 ( 38) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrX:355186-355737 ( 13) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrII:405680-406237 ( 20) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrII:226971-227372 ( 14) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrXIII:372198-372657 ( 60) TAAAAAAATGATTTCGCCCAGGATCGAACT 1 chrXVI:435630-436176 ( 32) AAAAAGAAAGCTCGCACTCAGGATCGAACT 1 chrXIII:572631-573128 ( 46) AAAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrV:176902-177433 ( 32) AAAAAGTACTCCGATACGGGGAGTCGAACC 1 chrIV:1016972-1017483 ( 22) AAAAGAAACTCCGAAGCGGGGAGTCGAACC 1 chrIII:295298-295864 ( 4) ATAAAAAATGCTTCCAATCGGATTTGAACC 1 chrII:266201-266664 ( 47) CAAAAAAATGCTTCCAATCGGATTTGAACC 1 chrXV:976376-976642 ( 13) AAAAATATTGCTCCAGGGGAGGTTCGAACT 1 chrXIV:95997-96473 ( 48) AAAAAATTTGAGCGGTACGAGAATCGAACC 1 chrVI:137234-137705 ( 59) TAAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrIX:248582-249328 ( 5) AAAAATAACGACACCAGCAGGATTTGAACC 1 chrX:378210-378605 ( 55) CAAAAAATTGATTTCGCCCAGGATCGAACT 1 chrXII:975771-976197 ( 41) AAAATAAACGACCCCAGTGAGGGTTGAACT 1 chrIV:619732-620202 ( 44) TAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrXV:438467-439043 ( 12) ATAAAGAACTCCTCATAGGGGGCTCGAACC 1 chrXV:853656-854773 ( 15) TTAAAAATTGGACGCAACCGGAATCGAACC 1 chrXIII:290570-291147 ( 43) AAAGAAGACTCCGATACGGGGAGTCGAACC 1 chrXVI:689401-689873 ( 38) AAATAATACGACACCAGCAGGATTTGAACC 1 chrVII:774116-774745 ( 20) AAAAAATTTGGACGAGTCCGGAATCGAACC 1 chrXI:312880-314001 ( 3) AAATAAAATGCCATCTCCTAGAATCGAACC 1 chrIV:437559-438126 ( 40) AAAAATGACGACAACTGCAGGACTCGAACC 1 chrVIII:134121-134705 ( 8) GCAAAAAAAGGTCCTACCCGGATTCGAACC 1 chrVII:823339-823726 ( 52) TCAAAAAATGATTTCGCCCAGGATCGAACT 1 chrV:469207-469769 ( 71) TTAAAAAATGATTTCGCCCAGGATCGAACT 1 chrXII:793776-794133 ( 64) TGAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXIII:420338-420874 ( 24) GATAAAAATGATTTCGCCCAGGATCGAACT 1 chrX:422672-423376 ( 14) AGAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrVII:541710-542149 ( 21) AAAGAACACTCCGATACGGGGAGTCGAACC 1 chrIII:227763-228238 ( 71) AAATTAAACGACACCAGCAGGATTTGAACC 1 chrXV:464290-464808 ( 31) AAATAAAAGGGGCGAGCTGGGAATTGAACC 1 chrVII:730959-731408 ( 56) GCAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrXII:592295-592821 ( 3) AAAAATAATGAGAGCTAAGGGATTCGAACC 1 chrII:326484-327056 ( 64) AAAGAGTTTGATCCAACCGAGGTTCGAACT 1 chrV:487082-487615 ( 25) AACGAATACTCCGATACGGGGAGTCGAACC 1 chrXV:710119-710437 ( 23) AAAAAAATTAGCGCCGCTCGGTTTCGATCC 1 chrV:492206-492568 ( 7) AAATAATCCTTCCCCGCCAGGACTTGAACC 1 chrXVI:856745-857169 ( 46) AATTAAAATGGACGAGTCCGGAATCGAACC 1 chrXV:663483-664098 ( 64) CTTAAAAATGATTTCGCCCAGGATCGAACT 1 chrXV:274469-274994 ( 71) AAGAAATGCGTCACAGACAGGATTCGAACC 1 chrIII:123346-123821 ( 36) AACAATGTGGGGCGAGCCGGGACTCGAACC 1 chrXVI:338447-339284 ( 25) AATAAATTTAGCGCCGCTCGGTTTCGATCC 1 chrXI:457970-459385 ( 22) ATATAATATGGTTGCTAAGAGATTCGAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCHCDMSSGGRNTCGAACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 35216 bayes= 6.40046 E= 1.2e-329 143 -191 -232 -171 148 -191 -291 -194 157 -291 -391 -220 138 -191 -159 -171 159 -1289 -391 -194 138 -1289 -91 -152 121 -391 -191 -35 90 -391 -91 6 -135 109 -291 52 -171 -1289 182 -52 -13 104 34 -220 -220 126 -159 38 -135 145 -10 -94 -61 85 -45 0 -94 158 -32 -171 18 -1289 95 -13 29 113 -21 -352 -352 104 90 -61 -106 85 130 -452 -20 -1289 190 -1289 -1289 -1289 234 -1289 73 -1289 126 -352 38 0 0 -52 -1289 -1289 -1289 173 -1289 192 -1289 -27 -1289 -1289 234 -1289 173 -1289 -1289 -1289 169 -1289 -1289 -352 -1289 234 -1289 -1289 -1289 195 -1289 -35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCHCDMSSGGRNTCGAACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 76 E= 1.2e-329 0.815789 0.052632 0.039474 0.092105 0.842105 0.052632 0.026316 0.078947 0.894737 0.026316 0.013158 0.065789 0.789474 0.052632 0.065789 0.092105 0.907895 0.000000 0.013158 0.078947 0.789474 0.000000 0.105263 0.105263 0.697368 0.013158 0.052632 0.236842 0.565789 0.013158 0.105263 0.315789 0.118421 0.421053 0.026316 0.434211 0.092105 0.000000 0.697368 0.210526 0.276316 0.407895 0.250000 0.065789 0.065789 0.473684 0.065789 0.394737 0.118421 0.539474 0.184211 0.157895 0.197368 0.355263 0.144737 0.302632 0.157895 0.592105 0.157895 0.092105 0.342105 0.000000 0.381579 0.276316 0.368421 0.434211 0.171053 0.026316 0.026316 0.407895 0.368421 0.197368 0.144737 0.355263 0.486842 0.013158 0.263158 0.000000 0.736842 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.473684 0.026316 0.394737 0.197368 0.197368 0.210526 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.973684 0.000000 0.000000 0.026316 0.000000 1.000000 0.000000 0.000000 0.000000 0.763158 0.000000 0.236842 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCHCDMSSGGRNTCGAACC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAA[AT][AT][TC][GT][CAG][CT]C[CT]C[GAT][CA][CG][GC][GA]G[AG][AT]T[CT]GAAC[CT] -------------------------------------------------------------------------------- Time 232.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBBKBDTGGCCBAGTKGKTWRAGSSNYCS MEME-2 width = 30 sites = 64 llr = 1175 E-value = 4.7e-212 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBBKBDTGGCCBAGTKGKTWRAGSSNYCS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :11:113:2:::2a2::::16561::2221 pos.-specific C :44323::::763::12::3::2:452453 probability G 8522333:8a:22:8:4a61:428453225 matrix T 2:34435a::333::94:464:112:2311 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * * * * * Relative 1.4 * **** *** * * Entropy 1.2 * **** *** ** * * (26.5 bits) 0.9 * ***** *** ** * * 0.7 ** ***** *** ** ** *** 0.5 ** ****** ************* * 0.2 ************************** *** 0.0 ------------------------------ Multilevel GGCTTCTTGGCCCAGTGGGTAAAGCGGCCG consensus CTCGGA A TTT A T TCTG GCATAC sequence GG TG T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBKBDTGGCCBAGTKGKTWRAGSSNYCS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:880181-880574 - 13 3.14e-14 ACAATATAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXIV:602116-602549 + 30 3.14e-14 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXIV:569722-570103 - 49 3.14e-14 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXII:1051968-1052224 - 69 3.14e-14 AT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXII:734607-734969 + 64 3.14e-14 AACAAAGTTT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAAT chrIX:183285-183706 - 39 3.14e-14 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXII:656841-657203 - 5 8.26e-11 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC CTTA chrIV:409923-410824 + 56 8.26e-11 TACAAATATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC CTTAGCATGG chrVII:115318-115721 + 19 1.09e-10 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrIV:359357-359811 + 43 1.09e-10 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrXV:353907-354322 - 20 1.43e-10 ACGGTTTACT GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrXIV:104580-105060 + 35 1.43e-10 CAAGTTCTCA GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrX:58998-59370 - 9 1.43e-10 TAAAATAGAA GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAA chrVIII:115941-116379 - 40 1.43e-10 CACTATTAGA GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrIX:174894-175209 + 30 1.43e-10 ACAAGTACGA GCTTCTATGGCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrXIV:442792-443245 + 38 1.87e-10 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT GATTCAAGAA chrXII:628159-628637 + 35 1.87e-10 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT GATTCAAGAA chrVII:422897-423369 + 9 1.87e-10 AGATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT GATTCAAGAA chrVII:205323-205754 + 33 1.87e-10 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT GATTCAAGAA chrXII:962846-963254 - 26 3.52e-10 TATTATCGAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrXI:83975-84430 + 56 3.52e-10 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrX:424276-424721 - 38 3.52e-10 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrIV:519654-519905 + 14 3.52e-10 GTGATTTTAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrXV:228132-228591 + 20 4.50e-10 TAAAATATTA GACTCCATGGCCAAGTTGGTTAAGGCGTGC GACTGTTAAT chrXIV:632413-632880 + 3 4.50e-10 GT GACTCCATGGCCAAGTTGGTTAAGGCGTGC GACTGTTAAT chrXI:74410-74801 + 69 4.50e-10 ATAGCAATTA GACTCCATGGCCAAGTTGGTTAAGGCGTGC GA chrVII:730959-731408 + 4 4.50e-10 AAA GACTCCATGGCCAAGTTGGTTAAGGCGTGC GACTGTTAAT chrIII:127509-127910 + 57 4.50e-10 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGCGTGC GACTGTTAAT chrXVI:581850-582279 + 48 6.43e-10 CAACAAAAGA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrX:617699-618148 + 46 6.43e-10 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTCA GATTTAGGTG chrX:414767-415236 + 15 6.43e-10 CAACGAATTA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrVII:122052-122474 + 56 6.43e-10 CAACGAATTA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrV:435593-436012 - 43 6.43e-10 AACAATAAGA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrIX:300068-300491 - 42 6.43e-10 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrIV:1201542-1202037 + 11 6.43e-10 CAAATAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrXV:853656-854773 - 66 7.22e-10 CATCA GGGCACATGGCGCAGTTGGTAGCGCGCTTC CCTTGCAAGG chrXIV:374668-375104 + 33 8.10e-10 AGAAAAATAA GCGGACTTAGCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrXVI:560071-560483 - 33 1.41e-09 TAGAAATTGA GCGGATTTAGCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrXII:167767-168233 - 46 1.41e-09 ATAGTCATAT GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrVII:440570-440978 - 54 1.41e-09 TAAAATATAT GCGGATTTAGCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrII:36227-36597 + 36 1.41e-09 TCAGTTGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrI:182057-183170 - 11 1.41e-09 ATACAATTTT GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrXI:307901-308458 - 59 2.65e-09 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrX:378210-378605 + 3 2.65e-09 TA GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrV:469207-469769 + 19 2.65e-09 AGAAATAATT GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrV:438533-438940 + 14 2.65e-09 CAACAAATTA GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrIV:1150729-1151159 - 18 8.31e-09 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTAAGGCGATGC CTGCTATTTC chrXIII:195956-196305 - 61 1.65e-08 AAGTTCACAA GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrXII:92408-92737 + 26 1.65e-08 AAGTTAATAA GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrI:138969-139369 + 33 1.65e-08 CAATTAGTAC GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrXV:340133-340587 - 32 4.48e-08 TCAAGATCTG TTCCTCGTGGCCCAATGGTCACGGCGTCTG GCTACGAACC chrV:492206-492568 - 58 4.48e-08 GAACATCCTA TTCCTCGTGGCCCAATGGTCACGGCGTCTG GCTACGAACC chrX:390864-391326 - 41 4.81e-08 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrXV:226438-226903 - 32 8.86e-08 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrXII:793776-794133 + 14 8.86e-08 TGTAATATAA TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrX:396604-396952 - 39 8.86e-08 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrX:374201-374820 - 6 8.86e-08 CTTTGTTTCT TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGT chrX:355186-355737 + 45 8.86e-08 CTTTGTTTCT TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrX:204555-204986 + 15 8.86e-08 AACATAAAAA TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrVII:544404-544871 - 32 8.86e-08 AGATATTTCT TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrVII:531387-531820 + 57 8.86e-08 TCGAGTTACT TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrII:405680-406237 + 52 8.86e-08 CTTTGTTTCT TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrXIV:631679-632111 - 43 2.29e-07 AACTTCTACC GGGCGTGTGGTCTAGAGGTATGATTCTCGC TTAGGGTGCG chrXV:110858-111199 - 26 2.99e-07 CAATTAACCC GGGCGGTTAGTGTAGTGGTTATCATCCCAC CCTTCCAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBKBDTGGCCBAGTKGKTWRAGSSNYCS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:880181-880574 3.1e-14 12_[-2]_58 chrXIV:602116-602549 3.1e-14 29_[+2]_41 chrXIV:569722-570103 3.1e-14 48_[-2]_22 chrXII:1051968-1052224 3.1e-14 68_[-2]_2 chrXII:734607-734969 3.1e-14 63_[+2]_7 chrIX:183285-183706 3.1e-14 38_[-2]_32 chrXII:656841-657203 8.3e-11 4_[-2]_66 chrIV:409923-410824 8.3e-11 55_[+2]_15 chrVII:115318-115721 1.1e-10 18_[+2]_52 chrIV:359357-359811 1.1e-10 42_[+2]_28 chrXV:353907-354322 1.4e-10 19_[-2]_51 chrXIV:104580-105060 1.4e-10 34_[+2]_36 chrX:58998-59370 1.4e-10 8_[-2]_62 chrVIII:115941-116379 1.4e-10 39_[-2]_31 chrIX:174894-175209 1.4e-10 29_[+2]_41 chrXIV:442792-443245 1.9e-10 37_[+2]_33 chrXII:628159-628637 1.9e-10 34_[+2]_36 chrVII:422897-423369 1.9e-10 8_[+2]_62 chrVII:205323-205754 1.9e-10 32_[+2]_38 chrXII:962846-963254 3.5e-10 25_[-2]_45 chrXI:83975-84430 3.5e-10 55_[+2]_15 chrX:424276-424721 3.5e-10 37_[-2]_33 chrIV:519654-519905 3.5e-10 13_[+2]_57 chrXV:228132-228591 4.5e-10 19_[+2]_51 chrXIV:632413-632880 4.5e-10 2_[+2]_68 chrXI:74410-74801 4.5e-10 68_[+2]_2 chrVII:730959-731408 4.5e-10 3_[+2]_67 chrIII:127509-127910 4.5e-10 56_[+2]_14 chrXVI:581850-582279 6.4e-10 47_[+2]_23 chrX:617699-618148 6.4e-10 45_[+2]_25 chrX:414767-415236 6.4e-10 14_[+2]_56 chrVII:122052-122474 6.4e-10 55_[+2]_15 chrV:435593-436012 6.4e-10 42_[-2]_28 chrIX:300068-300491 6.4e-10 41_[-2]_29 chrIV:1201542-1202037 6.4e-10 10_[+2]_60 chrXV:853656-854773 7.2e-10 65_[-2]_5 chrXIV:374668-375104 8.1e-10 32_[+2]_38 chrXVI:560071-560483 1.4e-09 32_[-2]_38 chrXII:167767-168233 1.4e-09 45_[-2]_25 chrVII:440570-440978 1.4e-09 53_[-2]_17 chrII:36227-36597 1.4e-09 35_[+2]_35 chrI:182057-183170 1.4e-09 10_[-2]_60 chrXI:307901-308458 2.6e-09 58_[-2]_12 chrX:378210-378605 2.6e-09 2_[+2]_68 chrV:469207-469769 2.6e-09 18_[+2]_52 chrV:438533-438940 2.6e-09 13_[+2]_57 chrIV:1150729-1151159 8.3e-09 17_[-2]_53 chrXIII:195956-196305 1.6e-08 60_[-2]_10 chrXII:92408-92737 1.6e-08 25_[+2]_45 chrI:138969-139369 1.6e-08 32_[+2]_38 chrXV:340133-340587 4.5e-08 31_[-2]_39 chrV:492206-492568 4.5e-08 57_[-2]_13 chrX:390864-391326 4.8e-08 40_[-2]_30 chrXV:226438-226903 8.9e-08 31_[-2]_39 chrXII:793776-794133 8.9e-08 13_[+2]_57 chrX:396604-396952 8.9e-08 38_[-2]_32 chrX:374201-374820 8.9e-08 5_[-2]_65 chrX:355186-355737 8.9e-08 44_[+2]_26 chrX:204555-204986 8.9e-08 14_[+2]_56 chrVII:544404-544871 8.9e-08 31_[-2]_39 chrVII:531387-531820 8.9e-08 56_[+2]_14 chrII:405680-406237 8.9e-08 51_[+2]_19 chrXIV:631679-632111 2.3e-07 42_[-2]_28 chrXV:110858-111199 3e-07 25_[-2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBKBDTGGCCBAGTKGKTWRAGSSNYCS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBBKBDTGGCCBAGTKGKTWRAGSSNYCS width=30 seqs=64 chrXVI:880181-880574 ( 13) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXIV:602116-602549 ( 30) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXIV:569722-570103 ( 49) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXII:1051968-1052224 ( 69) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXII:734607-734969 ( 64) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrIX:183285-183706 ( 39) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXII:656841-657203 ( 5) GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC 1 chrIV:409923-410824 ( 56) GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC 1 chrVII:115318-115721 ( 19) TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG 1 chrIV:359357-359811 ( 43) TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG 1 chrXV:353907-354322 ( 20) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrXIV:104580-105060 ( 35) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrX:58998-59370 ( 9) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrVIII:115941-116379 ( 40) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrIX:174894-175209 ( 30) GCTTCTATGGCCAAGTTGGTAAGGCGCCAC 1 chrXIV:442792-443245 ( 38) GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT 1 chrXII:628159-628637 ( 35) GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT 1 chrVII:422897-423369 ( 9) GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT 1 chrVII:205323-205754 ( 33) GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT 1 chrXII:962846-963254 ( 26) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrXI:83975-84430 ( 56) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrX:424276-424721 ( 38) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrIV:519654-519905 ( 14) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrXV:228132-228591 ( 20) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrXIV:632413-632880 ( 3) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrXI:74410-74801 ( 69) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrVII:730959-731408 ( 4) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrIII:127509-127910 ( 57) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrXVI:581850-582279 ( 48) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrX:617699-618148 ( 46) GGGAGTTTGGCCGAGTGGTTTAAGGCGTCA 1 chrX:414767-415236 ( 15) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrVII:122052-122474 ( 56) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrV:435593-436012 ( 43) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrIX:300068-300491 ( 42) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrIV:1201542-1202037 ( 11) GCCTTGTTGGCGCAATCGGTAGCGCGTATG 1 chrXV:853656-854773 ( 66) GGGCACATGGCGCAGTTGGTAGCGCGCTTC 1 chrXIV:374668-375104 ( 33) GCGGACTTAGCTCAGTTGGGAGAGCGCCAG 1 chrXVI:560071-560483 ( 33) GCGGATTTAGCTCAGTTGGGAGAGCGCCAG 1 chrXII:167767-168233 ( 46) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrVII:440570-440978 ( 54) GCGGATTTAGCTCAGTTGGGAGAGCGCCAG 1 chrII:36227-36597 ( 36) GCGGATTTAGCTCAGTTGGGAGAGCGCCAG 1 chrI:182057-183170 ( 11) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrXI:307901-308458 ( 59) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrX:378210-378605 ( 3) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrV:469207-469769 ( 19) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrV:438533-438940 ( 14) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrIV:1150729-1151159 ( 18) GTCCCAGTGGCCGAGTGGTTAAGGCGATGC 1 chrXIII:195956-196305 ( 61) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrXII:92408-92737 ( 26) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrI:138969-139369 ( 33) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrXV:340133-340587 ( 32) TTCCTCGTGGCCCAATGGTCACGGCGTCTG 1 chrV:492206-492568 ( 58) TTCCTCGTGGCCCAATGGTCACGGCGTCTG 1 chrX:390864-391326 ( 41) GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG 1 chrXV:226438-226903 ( 32) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrXII:793776-794133 ( 14) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrX:396604-396952 ( 39) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrX:374201-374820 ( 6) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrX:355186-355737 ( 45) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrX:204555-204986 ( 15) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrVII:544404-544871 ( 32) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrVII:531387-531820 ( 57) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrII:405680-406237 ( 52) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrXIV:631679-632111 ( 43) GGGCGTGTGGTCTAGAGGTATGATTCTCGC 1 chrXV:110858-111199 ( 26) GGGCGGTTAGTGTAGTGGTTATCATCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBKBDTGGCCBAGTKGKTWRAGSSNYCS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 35216 bayes= 11.1033 E= 4.7e-212 -1264 -1264 207 -81 -195 109 120 -269 -227 98 25 5 -269 59 25 48 -110 -8 34 48 -227 73 66 -3 -10 -1264 34 63 -1264 -1264 -1264 173 -37 -1264 195 -1264 -1264 -1264 234 -1264 -1264 186 -1264 -10 -1264 159 -34 -27 -95 80 -8 5 173 -1264 -1264 -1264 -37 -1264 195 -1264 -427 -166 -1264 161 -427 -8 115 25 -1264 -1264 234 -1264 -1264 -1264 151 53 -147 43 -166 90 90 -1264 -1264 53 81 -266 109 -427 105 -34 -34 -227 -127 -1264 198 -169 -1264 115 92 -69 -1264 129 138 -1264 -37 4 73 -37 -95 109 -20 -27 -57 134 -34 -110 -195 59 134 -127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBKBDTGGCCBAGTKGKTWRAGSSNYCS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 64 E= 4.7e-212 0.000000 0.000000 0.828125 0.171875 0.078125 0.421875 0.453125 0.046875 0.062500 0.390625 0.234375 0.312500 0.046875 0.296875 0.234375 0.421875 0.140625 0.187500 0.250000 0.421875 0.062500 0.328125 0.312500 0.296875 0.281250 0.000000 0.250000 0.468750 0.000000 0.000000 0.000000 1.000000 0.234375 0.000000 0.765625 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.718750 0.000000 0.281250 0.000000 0.593750 0.156250 0.250000 0.156250 0.343750 0.187500 0.312500 1.000000 0.000000 0.000000 0.000000 0.234375 0.000000 0.765625 0.000000 0.015625 0.062500 0.000000 0.921875 0.015625 0.187500 0.437500 0.359375 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.562500 0.437500 0.109375 0.265625 0.062500 0.562500 0.562500 0.000000 0.000000 0.437500 0.531250 0.031250 0.421875 0.015625 0.625000 0.156250 0.156250 0.062500 0.125000 0.000000 0.781250 0.093750 0.000000 0.437500 0.375000 0.187500 0.000000 0.484375 0.515625 0.000000 0.234375 0.203125 0.328125 0.234375 0.156250 0.421875 0.171875 0.250000 0.203125 0.500000 0.156250 0.140625 0.078125 0.296875 0.500000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBKBDTGGCCBAGTKGKTWRAGSSNYCS MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][CTG][TCG][TG][CGT][TAG]T[GA]G[CT][CT][CT]A[GA]T[GT]G[GT][TC][AT][AG]AG[CG][GC][GATC][CT][CA][GC] -------------------------------------------------------------------------------- Time 445.38 secs. ******************************************************************************** ******************************************************************************** MOTIF BSRGRWTCGAACYSVBGAYCTYMVSATTA MEME-3 width = 29 sites = 31 llr = 664 E-value = 8.5e-107 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSRGRWTCGAACYSVBGAYCTYMVSATTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::3:54:::aa:113:18:1:133:7:17 pos.-specific C 351::2:8:::a6532::68255241:1: probability G 456a52::a:::14349::1:::462111 matrix T 3:1::3a2::::3:14:24:8421::971 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * * **** * Relative 1.4 * * ****** * * * Entropy 1.2 * * ****** * ** * * (30.9 bits) 0.9 * ** ****** * ***** * * 0.7 **** ******** ****** * * 0.5 ***** ******** ******** ***** 0.2 ***** *********************** 0.0 ----------------------------- Multilevel GGGGGATCGAACCCAGGACCTCCGGATTA consensus TCA AT TGCT T TAAC sequence C GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGRWTCGAACYSVBGAYCTYMVSATTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:602116-602549 - 66 1.79e-13 TCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXIV:569722-570103 + 14 1.79e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrIX:183285-183706 + 4 1.79e-13 CTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrX:390864-391326 + 7 2.87e-12 TCCAGG GGAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrIV:1175740-1176073 - 8 2.87e-12 ATGCTCCAGG GGAGGTTCGAACTCTCGACCTTCAGATTA TGAGACT chrV:435593-436012 + 9 4.21e-12 GCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrIX:300068-300491 + 8 4.21e-12 CCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrIV:1201542-1202037 - 46 4.21e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXIV:104580-105060 - 70 5.40e-12 AA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrVIII:115941-116379 + 6 5.40e-12 TCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIX:174894-175209 - 65 5.40e-12 CTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXI:162332-162754 + 3 9.81e-12 GA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrIV:802568-803002 + 5 1.93e-11 CTAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrIII:168129-168553 + 19 1.93e-11 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrVIII:358273-358761 + 20 6.70e-11 ATGCGAATTC TGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrVII:440570-440978 + 1 6.70e-11 . TGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrXIII:808072-808536 + 1 1.08e-10 . CCGGATTCGAACTGGGGTTGTTCGGATCA GAACCGAAAG chrXIII:837743-838265 - 25 1.71e-10 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrIV:946129-946632 - 33 1.71e-10 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrVIII:475489-475912 + 65 2.89e-10 ATGTTCCAAC CGAGGATCGAACTCGGGACCTTTGCCGTG TGAAGGC chrIV:1075294-1075751 + 9 2.89e-10 GTTCCAAC CGAGGATCGAACTCGGGACCTTTGCCGTG TGAAGGCAAC chrXV:228132-228591 - 56 3.72e-10 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrVIII:466822-467218 - 54 3.72e-10 ATGCCACCTG CCAGAATTGAACTAGCGACCTTTGCATTA CAAGTGCAAC chrXIV:631679-632111 + 10 5.16e-10 GGGGCGAGC CGGGACTCGAACCCGGGACCTCCCGCACC CTAAGCGAGA chrXVI:744079-744534 - 62 6.05e-10 TTGCCACCTG TCAGAATTGAACTAACGACCTTTGCATTA CAAGTGCAAC chrXI:578742-579338 - 33 6.54e-10 ACTCCTCATA GGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrX:115703-116283 + 5 6.54e-10 ATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrX:396604-396952 + 7 1.49e-09 GCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVII:779401-779934 - 33 2.42e-09 TTGAGCGGTA CGAGAATCGAACCCGTGTCCCCACCTTGG AAGGGTGGGA chrIII:149740-150177 - 46 3.16e-09 ATAGCGCCGC TCGGTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrII:642848-643261 + 12 3.37e-09 AAGCTCGCAC TCAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGRWTCGAACYSVBGAYCTYMVSATTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602116-602549 1.8e-13 65_[-3]_6 chrXIV:569722-570103 1.8e-13 13_[+3]_58 chrIX:183285-183706 1.8e-13 3_[+3]_68 chrX:390864-391326 2.9e-12 6_[+3]_65 chrIV:1175740-1176073 2.9e-12 7_[-3]_64 chrV:435593-436012 4.2e-12 8_[+3]_63 chrIX:300068-300491 4.2e-12 7_[+3]_64 chrIV:1201542-1202037 4.2e-12 45_[-3]_26 chrXIV:104580-105060 5.4e-12 69_[-3]_2 chrVIII:115941-116379 5.4e-12 5_[+3]_66 chrIX:174894-175209 5.4e-12 64_[-3]_7 chrXI:162332-162754 9.8e-12 2_[+3]_69 chrIV:802568-803002 1.9e-11 4_[+3]_67 chrIII:168129-168553 1.9e-11 18_[+3]_53 chrVIII:358273-358761 6.7e-11 19_[+3]_52 chrVII:440570-440978 6.7e-11 [+3]_71 chrXIII:808072-808536 1.1e-10 [+3]_71 chrXIII:837743-838265 1.7e-10 24_[-3]_47 chrIV:946129-946632 1.7e-10 32_[-3]_39 chrVIII:475489-475912 2.9e-10 64_[+3]_7 chrIV:1075294-1075751 2.9e-10 8_[+3]_63 chrXV:228132-228591 3.7e-10 55_[-3]_16 chrVIII:466822-467218 3.7e-10 53_[-3]_18 chrXIV:631679-632111 5.2e-10 9_[+3]_62 chrXVI:744079-744534 6e-10 61_[-3]_10 chrXI:578742-579338 6.5e-10 32_[-3]_39 chrX:115703-116283 6.5e-10 4_[+3]_67 chrX:396604-396952 1.5e-09 6_[+3]_65 chrVII:779401-779934 2.4e-09 32_[-3]_39 chrIII:149740-150177 3.2e-09 45_[-3]_26 chrII:642848-643261 3.4e-09 11_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGRWTCGAACYSVBGAYCTYMVSATTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSRGRWTCGAACYSVBGAYCTYMVSATTA width=29 seqs=31 chrXIV:602116-602549 ( 66) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXIV:569722-570103 ( 14) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrIX:183285-183706 ( 4) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrX:390864-391326 ( 7) GGAGGTTCGAACTCTCGACCTTCAGATTA 1 chrIV:1175740-1176073 ( 8) GGAGGTTCGAACTCTCGACCTTCAGATTA 1 chrV:435593-436012 ( 9) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrIX:300068-300491 ( 8) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrIV:1201542-1202037 ( 46) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrXIV:104580-105060 ( 70) TCGGATTTGAACCGATGATCTCCACATTA 1 chrVIII:115941-116379 ( 6) TCGGATTTGAACCGATGATCTCCACATTA 1 chrIX:174894-175209 ( 65) TCGGATTTGAACCGATGATCTCCACATTA 1 chrXI:162332-162754 ( 3) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrIV:802568-803002 ( 5) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrIII:168129-168553 ( 19) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrVIII:358273-358761 ( 20) TGTGGATCGAACACAGGACCTCCAGATAA 1 chrVII:440570-440978 ( 1) TGTGGATCGAACACAGGACCTCCAGATAA 1 chrXIII:808072-808536 ( 1) CCGGATTCGAACTGGGGTTGTTCGGATCA 1 chrXIII:837743-838265 ( 25) GGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrIV:946129-946632 ( 33) GGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrVIII:475489-475912 ( 65) CGAGGATCGAACTCGGGACCTTTGCCGTG 1 chrIV:1075294-1075751 ( 9) CGAGGATCGAACTCGGGACCTTTGCCGTG 1 chrXV:228132-228591 ( 56) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrVIII:466822-467218 ( 54) CCAGAATTGAACTAGCGACCTTTGCATTA 1 chrXIV:631679-632111 ( 10) CGGGACTCGAACCCGGGACCTCCCGCACC 1 chrXVI:744079-744534 ( 62) TCAGAATTGAACTAACGACCTTTGCATTA 1 chrXI:578742-579338 ( 33) GGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrX:115703-116283 ( 5) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrX:396604-396952 ( 7) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrVII:779401-779934 ( 33) CGAGAATCGAACCCGTGTCCCCACCTTGG 1 chrIII:149740-150177 ( 46) TCGGTTTCGATCCGAGGACATCAGGGTTA 1 chrII:642848-643261 ( 12) TCAGGATCGAACTAAGGACCAACAGATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGRWTCGAACYSVBGAYCTYMVSATTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 35712 bayes= 10.1319 E= 8.5e-107 -1160 55 97 9 -1160 119 147 -1160 -6 -161 155 -223 -1160 -1160 234 -1160 58 -1160 138 -322 36 -29 -29 -6 -1160 -1160 -1160 173 -1160 203 -1160 -64 -1160 -1160 234 -1160 173 -1160 -1160 -1160 168 -1160 -1160 -322 -1160 234 -1160 -1160 -223 155 -161 -6 -164 147 84 -1160 9 71 55 -223 -1160 19 97 36 -123 -1160 214 -1160 142 -1160 -261 -91 -1160 155 -1160 47 -223 203 -103 -322 -322 -3 -1160 136 -223 138 -1160 47 -6 138 -261 -91 9 -3 84 -123 -1160 84 171 -1160 116 -103 -3 -322 -322 -1160 -161 158 -164 -62 -103 116 123 -261 -62 -123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGRWTCGAACYSVBGAYCTYMVSATTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 31 E= 8.5e-107 0.000000 0.290323 0.387097 0.322581 0.000000 0.451613 0.548387 0.000000 0.290323 0.064516 0.580645 0.064516 0.000000 0.000000 1.000000 0.000000 0.451613 0.000000 0.516129 0.032258 0.387097 0.161290 0.161290 0.290323 0.000000 0.000000 0.000000 1.000000 0.000000 0.806452 0.000000 0.193548 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.967742 0.000000 0.000000 0.032258 0.000000 1.000000 0.000000 0.000000 0.064516 0.580645 0.064516 0.290323 0.096774 0.548387 0.354839 0.000000 0.322581 0.322581 0.290323 0.064516 0.000000 0.225806 0.387097 0.387097 0.129032 0.000000 0.870968 0.000000 0.806452 0.000000 0.032258 0.161290 0.000000 0.580645 0.000000 0.419355 0.064516 0.806452 0.096774 0.032258 0.032258 0.193548 0.000000 0.774194 0.064516 0.516129 0.000000 0.419355 0.290323 0.516129 0.032258 0.161290 0.322581 0.193548 0.354839 0.129032 0.000000 0.354839 0.645161 0.000000 0.677419 0.096774 0.193548 0.032258 0.032258 0.000000 0.064516 0.903226 0.096774 0.129032 0.096774 0.677419 0.709677 0.032258 0.129032 0.129032 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGRWTCGAACYSVBGAYCTYMVSATTA MEME-3 regular expression -------------------------------------------------------------------------------- [GTC][GC][GA]G[GA][AT]TCGAAC[CT][CG][ACG][GTC]GA[CT]CT[CT][CA][GA][GC]ATTA -------------------------------------------------------------------------------- Time 648.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71790-73289 5.61e-01 100 chrI:81889-82311 1.74e-01 100 chrI:138969-139369 2.27e-06 32_[+2(1.65e-08)]_38 chrI:166169-166566 2.34e-07 [-1(1.17e-11)]_70 chrI:181126-181610 3.01e-01 100 chrI:182057-183170 1.64e-05 10_[-2(1.41e-09)]_60 chrII:9445-10015 8.39e-01 100 chrII:36227-36597 5.38e-06 35_[+2(1.41e-09)]_35 chrII:44203-45349 4.41e-01 100 chrII:60810-61340 7.93e-01 100 chrII:89672-90181 9.99e-01 100 chrII:165085-165422 3.13e-01 100 chrII:167823-169386 6.88e-01 100 chrII:181007-181954 8.45e-01 100 chrII:197293-197856 9.34e-19 5_[-3(1.79e-13)]_66 chrII:226971-227372 1.73e-06 13_[-1(9.24e-11)]_57 chrII:266201-266664 1.29e-14 30_[-3(5.40e-12)]_41 chrII:326484-327056 1.04e-05 63_[+1(3.16e-09)]_7 chrII:332177-332916 8.62e-01 100 chrII:347425-347897 2.96e-05 53_[-1(9.49e-07)]_17 chrII:350618-351050 3.97e-05 42_[+2(8.27e-06)]_28 chrII:405680-406237 3.01e-19 3_[-3(9.81e-12)]_19_[+2(8.86e-08)]_\ 19 chrII:415495-416125 9.00e-01 100 chrII:416324-416635 8.78e-01 100 chrII:476827-477755 5.77e-01 100 chrII:592870-594330 7.84e-01 100 chrII:604071-607131 4.65e-01 100 chrII:642848-643261 5.75e-07 11_[+3(3.37e-09)]_60 chrII:644930-645403 4.40e-01 100 chrIII:68-632 7.74e-02 100 chrIII:834-1047 8.95e-01 100 chrIII:82385-82659 9.17e-02 100 chrIII:90851-91135 3.73e-05 7_[-1(7.75e-09)]_63 chrIII:123346-123821 8.84e-11 52_[+3(5.16e-10)]_19 chrIII:127509-127910 6.00e-06 56_[+2(4.50e-10)]_14 chrIII:142616-142978 2.83e-01 100 chrIII:149740-150177 1.91e-09 45_[-3(3.16e-09)]_26 chrIII:151037-151526 8.32e-17 44_[+1(2.57e-12)]_26 chrIII:163481-163868 3.27e-01 100 chrIII:168129-168553 3.40e-16 18_[+3(1.93e-11)]_4_[-2(9.52e-06)]_\ 19 chrIII:178331-178780 7.12e-01 100 chrIII:220959-223099 3.81e-01 100 chrIII:227763-228238 3.99e-06 70_[-1(2.23e-09)] chrIII:268770-269044 3.56e-01 100 chrIII:295298-295864 3.75e-07 3_[-1(1.61e-10)]_67 chrIII:316222-316596 1.46e-01 100 chrIV:7-228 3.08e-01 100 chrIV:83323-84092 7.12e-01 100 chrIV:117148-117872 2.22e-01 100 chrIV:130235-131046 7.45e-01 100 chrIV:216569-217807 9.56e-01 100 chrIV:221730-222332 6.30e-01 100 chrIV:229278-230500 5.55e-01 100 chrIV:307999-308413 6.80e-01 100 chrIV:321637-321963 9.62e-01 100 chrIV:341014-341842 2.52e-01 100 chrIV:355702-356911 4.28e-01 100 chrIV:358036-358471 9.48e-01 100 chrIV:359357-359811 7.61e-07 42_[+2(1.09e-10)]_28 chrIV:359974-360178 5.23e-01 100 chrIV:409923-410824 4.67e-07 55_[+2(8.26e-11)]_15 chrIV:411054-411636 6.50e-01 100 chrIV:433852-434881 7.21e-01 100 chrIV:437559-438126 1.29e-06 39_[-1(8.17e-10)]_31 chrIV:465188-465524 6.35e-02 100 chrIV:488414-489081 9.41e-01 100 chrIV:490602-493475 4.52e-01 100 chrIV:519654-519905 1.57e-09 13_[+2(3.52e-10)]_16_[-3(2.07e-05)]_\ 12 chrIV:520742-521175 6.46e-04 63_[+2(9.52e-06)]_7 chrIV:538992-539397 9.20e-01 100 chrIV:568715-569631 9.88e-01 100 chrIV:579053-580463 8.43e-02 100 chrIV:600852-601985 1.24e-01 100 chrIV:619732-620202 6.09e-09 43_[+1(2.46e-10)]_27 chrIV:644359-645370 3.67e-01 100 chrIV:667756-668261 1.45e-18 57_[+3(1.79e-13)]_14 chrIV:757503-758286 9.74e-01 100 chrIV:802568-803002 1.74e-11 4_[+3(1.93e-11)]_4_[-2(9.52e-06)]_\ 33 chrIV:835083-835566 1.18e-01 100 chrIV:835772-836312 5.15e-01 100 chrIV:884251-884581 7.40e-01 100 chrIV:946129-946632 1.04e-07 32_[-3(1.71e-10)]_39 chrIV:980599-981161 4.35e-01 100 chrIV:992719-993228 3.61e-01 100 chrIV:1013408-1013973 2.22e-01 100 chrIV:1016972-1017483 9.44e-13 21_[+1(1.44e-10)]_49 chrIV:1075294-1075751 9.48e-08 8_[+3(2.89e-10)]_5_[-2(8.73e-05)]_\ 28 chrIV:1094935-1095653 7.02e-01 100 chrIV:1150729-1151159 2.27e-05 17_[-2(8.31e-09)]_53 chrIV:1175740-1176073 8.78e-13 7_[-3(2.87e-12)]_64 chrIV:1201542-1202037 2.34e-18 10_[+2(6.43e-10)]_5_[-3(4.21e-12)]_\ 26 chrIV:1256308-1256578 4.43e-01 100 chrIV:1256747-1257295 5.94e-11 28_[+1(5.20e-11)]_42 chrIV:1300916-1301347 7.36e-01 100 chrIV:1305403-1305803 7.01e-01 100 chrIV:1351908-1353063 1.87e-16 39_[+3(4.21e-12)]_32 chrIV:1354871-1356290 4.45e-01 100 chrIV:1359429-1360811 2.16e-01 100 chrIV:1401021-1402546 6.59e-01 100 chrIV:1450714-1451830 9.98e-01 100 chrIV:1461511-1461850 1.06e-01 100 chrIX:68260-68522 5.81e-01 100 chrIX:69153-69562 4.05e-01 100 chrIX:99650-100023 6.33e-01 100 chrIX:128154-129999 3.27e-01 100 chrIX:130347-133799 8.08e-01 100 chrIX:174894-175209 1.07e-14 29_[+2(1.43e-10)]_5_[-3(5.40e-12)]_\ 7 chrIX:183285-183706 2.52e-20 3_[+3(1.79e-13)]_6_[-2(3.14e-14)]_\ 32 chrIX:197310-197743 9.74e-01 100 chrIX:210653-211076 4.00e-01 100 chrIX:248582-249328 3.13e-06 4_[-1(1.99e-10)]_66 chrIX:254233-254567 6.58e-01 100 chrIX:257370-258219 1.86e-02 67_[+1(7.37e-05)]_3 chrIX:265123-267708 1.28e-02 100 chrIX:300068-300491 2.04e-15 7_[+3(4.21e-12)]_5_[-2(6.43e-10)]_\ 29 chrIX:315499-316608 3.90e-01 100 chrIX:316883-317902 8.93e-01 100 chrIX:322394-324393 8.44e-01 100 chrIX:325739-326310 4.64e-01 100 chrIX:336065-336631 5.59e-10 42_[+1(5.23e-12)]_28 chrIX:370231-370621 1.76e-01 100 chrIX:382522-383046 9.68e-01 100 chrIX:391094-392508 2.38e-01 100 chrV:53498-53952 3.74e-01 100 chrV:61079-62145 2.64e-01 100 chrV:85114-87139 2.86e-01 100 chrV:99920-100302 5.57e-01 100 chrV:117644-118314 3.57e-01 100 chrV:130838-131360 3.27e-15 24_[+1(1.96e-11)]_10_[-1(6.37e-05)]_\ 6 chrV:134809-136065 8.32e-17 29_[+1(2.57e-12)]_41 chrV:138456-139967 2.25e-02 1_[+3(1.15e-05)]_70 chrV:140198-140912 1.79e-01 100 chrV:176902-177433 7.82e-13 31_[-1(1.44e-10)]_39 chrV:249782-250504 1.15e-03 65_[+3(2.58e-05)]_6 chrV:288129-289032 8.69e-01 100 chrV:305819-307180 8.35e-01 100 chrV:311699-312279 9.38e-01 100 chrV:354704-355382 1.57e-01 100 chrV:362203-362476 6.58e-01 100 chrV:395905-396590 7.08e-01 100 chrV:422810-423505 1.03e-01 100 chrV:431035-431956 8.93e-01 100 chrV:434384-434978 6.69e-01 100 chrV:435593-436012 2.04e-15 8_[+3(4.21e-12)]_5_[-2(6.43e-10)]_\ 28 chrV:438533-438940 2.75e-19 13_[+2(2.65e-09)]_22_[-1(1.73e-11)]_\ 5 chrV:441783-442727 9.03e-01 100 chrV:443057-443361 1.64e-19 34_[+1(1.71e-13)]_36 chrV:469207-469769 1.33e-17 18_[+2(2.65e-09)]_22_[-1(9.87e-10)] chrV:487082-487615 1.21e-11 41_[+3(6.54e-10)]_30 chrV:492206-492568 2.48e-12 6_[+1(7.16e-09)]_21_[-2(4.48e-08)]_\ 13 chrV:551040-551539 2.20e-20 37_[+1(2.12e-14)]_33 chrVI:53231-54369 2.55e-01 100 chrVI:64251-65371 2.19e-01 100 chrVI:95478-95923 4.38e-02 100 chrVI:100986-102472 4.83e-01 100 chrVI:136829-137034 1.06e-01 100 chrVI:137234-137705 7.46e-07 58_[+1(1.99e-10)]_12 chrVI:157844-158223 5.35e-01 100 chrVI:162023-162389 2.05e-01 100 chrVI:167249-167647 1.93e-02 38_[+2(1.35e-05)]_32 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chrXVI:689401-689873 5.20e-06 37_[-1(7.42e-10)]_33 chrXVI:699022-700682 2.40e-01 100 chrXVI:731911-732832 8.42e-01 100 chrXVI:744079-744534 6.67e-07 61_[-3(6.05e-10)]_10 chrXVI:768625-769489 8.50e-01 100 chrXVI:775654-776157 9.26e-01 100 chrXVI:794458-794833 7.86e-01 100 chrXVI:794996-795156 1.23e-01 100 chrXVI:810573-812272 4.37e-01 100 chrXVI:819351-819847 1.08e-18 15_[-3(1.79e-13)]_56 chrXVI:856745-857169 1.73e-09 45_[-1(9.05e-09)]_25 chrXVI:860169-860852 5.50e-02 44_[+3(9.49e-05)]_27 chrXVI:880181-880574 9.64e-10 12_[-2(3.14e-14)]_58 chrXVI:918845-919401 9.80e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************