******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--PDR3/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:32486-33278 1.0000 100 chrI:71701-73675 1.0000 100 chrI:81858-82354 1.0000 100 chrI:138944-139395 1.0000 100 chrI:142141-143694 1.0000 100 chrI:166171-166653 1.0000 100 chrI:181126-181579 1.0000 100 chrI:182187-183190 1.0000 100 chrII:9438-10027 1.0000 100 chrII:36235-36885 1.0000 100 chrII:44912-46723 1.0000 100 chrII:59510-61310 1.0000 100 chrII:87910-88600 1.0000 100 chrII:88907-89476 1.0000 100 chrII:89658-90103 1.0000 100 chrII:164784-165507 1.0000 100 chrII:167617-169712 1.0000 100 chrII:181274-181691 1.0000 100 chrII:197246-198125 1.0000 100 chrII:214794-219157 1.0000 100 chrII:226975-227379 1.0000 100 chrII:255057-255723 1.0000 100 chrII:256284-257711 1.0000 100 chrII:266158-266727 1.0000 100 chrII:301127-301665 1.0000 100 chrII:326479-327102 1.0000 100 chrII:332179-334140 1.0000 100 chrII:347391-347993 1.0000 100 chrII:350571-351068 1.0000 100 chrII:405666-406320 1.0000 100 chrII:412930-415284 1.0000 100 chrII:415501-415994 1.0000 100 chrII:476900-477775 1.0000 100 chrII:478958-479438 1.0000 100 chrII:592269-593440 1.0000 100 chrII:603960-607135 1.0000 100 chrII:612258-613982 1.0000 100 chrII:642848-643253 1.0000 100 chrII:644820-645464 1.0000 100 chrII:680294-682303 1.0000 100 chrIII:82-1074 1.0000 100 chrIII:30551-31156 1.0000 100 chrIII:78418-78887 1.0000 100 chrIII:82367-82671 1.0000 100 chrIII:90849-91135 1.0000 100 chrIII:107117-107825 1.0000 100 chrIII:123284-123823 1.0000 100 chrIII:127491-127919 1.0000 100 chrIII:142095-142964 1.0000 100 chrIII:149700-150194 1.0000 100 chrIII:150987-151526 1.0000 100 chrIII:162547-163936 1.0000 100 chrIII:168095-168564 1.0000 100 chrIII:177064-178790 1.0000 100 chrIII:227732-228551 1.0000 100 chrIII:295293-295967 1.0000 100 chrIV:44004-44547 1.0000 100 chrIV:83301-83841 1.0000 100 chrIV:116292-118877 1.0000 100 chrIV:125291-126146 1.0000 100 chrIV:129198-131056 1.0000 100 chrIV:216599-218086 1.0000 100 chrIV:221149-222371 1.0000 100 chrIV:229358-230790 1.0000 100 chrIV:306181-310171 1.0000 100 chrIV:321619-321964 1.0000 100 chrIV:322187-323586 1.0000 100 chrIV:340143-341751 1.0000 100 chrIV:358004-358579 1.0000 100 chrIV:358841-359804 1.0000 100 chrIV:410144-410779 1.0000 100 chrIV:411111-411717 1.0000 100 chrIV:417008-417425 1.0000 100 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chrXV:722940-724687 1.0000 100 chrXV:778611-781001 1.0000 100 chrXV:797004-798359 1.0000 100 chrXV:853803-854819 1.0000 100 chrXV:866354-868120 1.0000 100 chrXV:901434-901683 1.0000 100 chrXV:968098-968465 1.0000 100 chrXV:976381-976781 1.0000 100 chrXV:978668-979225 1.0000 100 chrXV:979774-981213 1.0000 100 chrXV:986867-988041 1.0000 100 chrXV:1003954-1004931 1.0000 100 chrXV:1025733-1026061 1.0000 100 chrXV:1027779-1029541 1.0000 100 chrXVI:55827-56433 1.0000 100 chrXVI:75399-76852 1.0000 100 chrXVI:172868-174134 1.0000 100 chrXVI:188332-188935 1.0000 100 chrXVI:209933-210535 1.0000 100 chrXVI:279943-280232 1.0000 100 chrXVI:280585-283233 1.0000 100 chrXVI:302607-304345 1.0000 100 chrXVI:338578-339297 1.0000 100 chrXVI:377928-379035 1.0000 100 chrXVI:404488-407876 1.0000 100 chrXVI:424098-425639 1.0000 100 chrXVI:432587-434358 1.0000 100 chrXVI:435616-436205 1.0000 100 chrXVI:519788-520555 1.0000 100 chrXVI:559960-560515 1.0000 100 chrXVI:572175-572711 1.0000 100 chrXVI:581821-582391 1.0000 100 chrXVI:622286-622873 1.0000 100 chrXVI:645360-646079 1.0000 100 chrXVI:653181-653421 1.0000 100 chrXVI:653855-655044 1.0000 100 chrXVI:689360-689877 1.0000 100 chrXVI:699821-700729 1.0000 100 chrXVI:718344-719966 1.0000 100 chrXVI:731625-732375 1.0000 100 chrXVI:744063-744576 1.0000 100 chrXVI:768989-769521 1.0000 100 chrXVI:775614-776115 1.0000 100 chrXVI:794443-796080 1.0000 100 chrXVI:810575-811296 1.0000 100 chrXVI:819303-820281 1.0000 100 chrXVI:856713-857177 1.0000 100 chrXVI:860134-860722 1.0000 100 chrXVI:866500-866860 1.0000 100 chrXVI:879570-880581 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--PDR3/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--PDR3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--PDR3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 536 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 53600 N= 536 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.300 C 0.200 G 0.200 T 0.300 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--PDR3/background): A 0.309 C 0.191 G 0.191 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF GTCMBSGGTTCGATYCCSSKH MEME-1 width = 21 sites = 107 llr = 1757 E-value = 3.3e-348 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCMBSGGTTCGATYCCSSKH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 32:3:12::::2a2::::2:3 pos.-specific C 118544::::a::24a75324 probability G 61:2357a:::8:2:::455: matrix T :62:21::aa:::45:21:33 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * ** * * Relative 1.4 * ****** * Entropy 1.2 * ******* ** (23.7 bits) 1.0 * * ******* **** 0.7 * * ******** ***** 0.5 * *********** ****** 0.2 ************* ******* 0.0 --------------------- Multilevel GTCCCGGGTTCGATTCCCGGC consensus A AGCA A AC TGCTT sequence GT A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCMBSGGTTCGATYCCSSKH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631675-632129 - 1 3.48e-13 GGTGCGGGAG GTCCCGGGTTCGAGTCCCGGC chrIV:1256800-1257319 - 6 2.45e-12 CCAAGCATGG GGCCCGGGTTCGATTCCCGGC TTCCG chrXVI:860134-860722 + 44 1.20e-11 CCATCGTTGG GCCCCCGGTTCGATTCCGGGC TTGCGCAGAT chrXV:281927-282497 + 45 1.20e-11 CCATCGTTGG GCCCCCGGTTCGATTCCGGGC TTGCGCATTT chrX:531544-532271 + 14 1.20e-11 CCATCGTTGG GCCCCCGGTTCGATTCCGGGC TTGCGCAGTT chrVII:845307-846095 + 41 1.20e-11 CCATCGTTGG GCCCCCGGTTCGATTCCGGGC TTGCGCAATG chrVI:180633-181277 - 76 1.20e-11 TTGG GCCCCCGGTTCGATTCCGGGC TTGCGCAGTC chrIV:83301-83841 + 70 1.20e-11 CCATCGTTGG GCCCCCGGTTCGATTCCGGGC TTGCGCAAGT chrII:197246-198125 - 1 1.20e-11 CCATCGTTGG GCCCCCGGTTCGATTCCGGGC chrIX:197307-197915 + 75 3.74e-11 TCACCGTGGA GACCGGGGTTCGACTCCCCGC TTCGG chrIV:1016940-1017510 - 39 3.74e-11 TCACCGTGGA GACCGGGGTTCGACTCCCCGC TTCGGAGTTT chrXVI:209933-210535 - 15 1.22e-10 TCACCGTGGA GACCGGGGTTCGACTCCCCGT ATCGGAGTTT chrXIII:290492-291155 + 72 1.22e-10 TCACCGTGGA GACCGGGGTTCGACTCCCCGT ATCGGAGT chrX:115699-116246 - 24 1.22e-10 TCACCGTGGA GACCGGGGTTCGACTCCCCGT ATCGGAGTAT chrVII:541709-542162 + 9 1.22e-10 ACCGTGGA GACCGGGGTTCGACTCCCCGT ATCGGAGTGT chrV:487114-487654 - 4 1.22e-10 TCACCGTGGA GACCGGGGTTCGACTCCCCGT ATC chrV:354660-355384 + 6 1.22e-10 GTGGA GACCGGGGTTCGACTCCCCGT ATCGGAGTAC chrV:176885-177452 + 25 1.22e-10 TCACCGTGGA GACCGGGGTTCGACTCCCCGT ATCGGAGTAC chrIX:370145-370810 + 34 1.22e-10 TCACCGTGGA GACCGGGGTTCGACTCCCCGT ATCGGAGTAT chrXV:663441-664143 - 77 2.08e-10 AAC GTCCCCAGTTCGATCCTGGGC GAAATCATTT chrXIII:586360-586938 - 44 2.08e-10 CACGCAGAAC GTCCCCAGTTCGATCCTGGGC GAAATCATTT chrXIII:420301-420892 - 49 2.08e-10 CACGCAGAAC GTCCCCAGTTCGATCCTGGGC GAAATCATTT chrXIII:372172-372672 - 80 2.08e-10 . GTCCCCAGTTCGATCCTGGGC GAAATCATTT chrXI:307929-308469 - 2 2.08e-10 CACGCAGAAC GTCCCCAGTTCGATCCTGGGC G chrX:378209-378596 + 54 2.08e-10 CACGCAGAAC GTCCCCAGTTCGATCCTGGGC GAAATCAATT chrVII:823341-823740 + 38 2.08e-10 CACGCAGAAC GTCCCCAGTTCGATCCTGGGC GAAATCATTT chrV:469197-469756 + 77 2.08e-10 CACGCAGAAC GTCCCCAGTTCGATCCTGGGC GAA chrV:438519-439010 + 32 2.08e-10 CACGCAGAAC GTCCCCAGTTCGATCCTGGGC GAAATCAATT chrIV:1075143-1075781 - 67 3.46e-10 CACGGCAAAG GTCCCGAGTTCGATCCTCGGT TGGAACATTT chrXVI:768989-769521 - 9 4.79e-10 ATACCGAAAT GTCAGGGGTTCGAGCCCCCTA TGAGGAGT chrXV:438390-439034 + 49 4.79e-10 ATACCGAAAT GTCAGGGGTTCGAGCCCCCTA TGAGGAGTTC chrXI:578676-579367 + 62 4.79e-10 ATACCGAAAT GTCAGGGGTTCGAGCCCCCTA TGAGGAGTTC chrVII:115322-115759 + 66 4.79e-10 ATACCGAAAT GTCAGGGGTTCGAGCCCCCTA TGAGGAGTTC chrVIII:134058-134747 + 13 5.59e-10 TGATCCGGAC AACCCCGGTTCGAATCCGGGT AGGACCTTTT chrV:130795-131420 - 32 5.59e-10 TGATCCGAAC AACCCCGGTTCGAATCCGGGT AAGACCTATT chrIV:802534-803041 - 1 5.59e-10 TGATCCGGAC AACCCCGGTTCGAATCCGGGT chrIV:644896-645380 - 72 5.59e-10 ATCCGGAC AACCCCGGTTCGAATCCGGGT AGGACCTTTT chrIII:168095-168564 - 29 5.59e-10 TGATCCGGAC AACCCCGGTTCGAATCCGGGT AGGACCTTTT chrV:311720-312339 - 51 8.79e-10 CAAGGAAGAG GTCATCGGTTCGATTCCGGTT GCGTCCAATG chrXIV:602082-602577 + 79 2.04e-09 TAACGCGGGG ATCAGCGGTTCGATCCCGCTA G chrXIV:569688-570092 - 34 2.04e-09 TAACGCGGGG ATCAGCGGTTCGATCCCGCTA GAGACCATTC chrXII:1051870-1052227 - 80 2.04e-09 . ATCAGCGGTTCGATCCCGCTA GAGACCATTA chrVII:738854-739554 + 14 2.04e-09 TAACGCGGGG ATCAGCGGTTCGATCCCGCTA GAGACCATTT chrV:443013-443359 - 73 2.04e-09 CGCGGGG ATCAGCGGTTCGATCCCGCTA GAGACCATAT chrIX:183205-183733 - 28 2.04e-09 TAACGCGGGG ATCAGCGGTTCGATCCCGCTA GAGACCACTT chrIV:667729-668265 - 67 2.04e-09 TAACGCGGGG ATCAGCGGTTCGATCCCGCTA GAGACCATTT chrXV:464273-464772 + 52 3.90e-09 CATGCGAGAG GCCCTGGGTTCAATTCCCAGC TCGCCCCTTT chrXIII:195933-196306 - 6 3.90e-09 CATGCGAGAG GCCCTGGGTTCAATTCCCAGC TCGCC chrXII:92323-92936 + 44 3.90e-09 CATGCGAGAG GCCCTGGGTTCAATTCCCAGC TCGCCCCTTT chrIV:488408-489169 - 66 3.90e-09 CACGGCGAAG ATCCCGAGTTCGAACCTCGGT TGGATCAGAA chrII:326479-327102 - 59 3.90e-09 CACGGCGAAG ATCCCGAGTTCGAACCTCGGT TGGATCAAAC chrXIII:807973-808579 - 27 4.41e-09 TGATCCGAAC AACCCCAGTTCGAATCCGGGT GGGACCTTCC chrXIV:96012-96468 - 58 4.98e-09 CCAAGGTGGG GACACGGGTTCGATTCTCGTA CCGCTCAAAT chrVII:779384-779946 + 45 4.98e-09 CCAAGGTGGG GACACGGGTTCGATTCTCGTA CCGCTCAAGA chrXVI:581821-582391 + 51 6.33e-09 TAATCATAAG GTTAGGGGTTCGAGCCCCCTA CAGGGCTTTC chrXIII:480372-480834 - 75 6.33e-09 ATAAG GTTAGGGGTTCGAGCCCCCTA CAGGGCTTCT chrX:414752-415291 + 40 6.33e-09 TAATCATAAG GTTAGGGGTTCGAGCCCCCTA CAGGGCTAAT chrVII:121922-122659 + 74 6.33e-09 TAATCATAAG GTTAGGGGTTCGAGCCCCCTA CAGGGC chrV:435552-436051 - 8 6.33e-09 TAATCATAAG GTTAGGGGTTCGAGCCCCCTA CAGGGCT chrIX:299962-300522 - 43 6.33e-09 TAATCATAAG GTTAGGGGTTCGAGCCCCCTA CAGGGCTATC chrXI:513046-513608 - 62 1.00e-08 TCGCGTGCCA GATCGGGGTTCAATTCCCCGT CGCGGAGATT chrX:204542-205050 + 33 1.00e-08 TCGCGTGCCA GATCGGGGTTCAATTCCCCGT CGCGGAGATT chrIV:884253-884665 + 57 1.00e-08 CAACGCGACC GTCGTGGGTTCAAACCCCACC TCGAGCACTT chrII:405666-406320 + 61 1.00e-08 TCGCGTGCCA GATCGGGGTTCAATTCCCCGT CGCGGAGATT chrXVI:856713-857177 + 52 2.12e-08 CATGGGAGAG GTCTCCGGTTCGATTCCGGAC TCGTCCATTT chrVII:774119-774647 + 61 2.12e-08 CATGGGAGAG GTCTCCGGTTCGATTCCGGAC TCGTCCAAAT chrIV:410144-410779 + 13 2.12e-08 CATGGGAGAG GTCTCCGGTTCGATTCCGGAC TCGTCCAAAT chrXIII:131567-132125 - 36 4.20e-08 TAATCAGAAG ATTATGGGTTCGACCCCCATC GTGAGTGCTT chrXI:162156-162801 - 66 4.20e-08 TAATCAGAAG ATTATGGGTTCGACCCCCATC GTGAGTGTTT chrX:374163-374846 - 59 4.20e-08 TAATCAGAAG ATTATGGGTTCGACCCCCATC GTGAGTGCTT chrVII:828443-829007 - 55 4.20e-08 TAATCAGAAG ATTATGGGTTCGACCCCCATC GTGAGTGCTT chrXVI:435616-436205 - 40 7.92e-08 AAATCTGTTG GTCCTTAGTTCGATCCTGAGT GCGAGCTTTC chrII:642848-643253 - 14 7.92e-08 AAATCTGTTG GTCCTTAGTTCGATCCTGAGT GCGAGCTTCT chrVII:700166-701270 + 61 9.41e-08 TCTCTTCGGA GGCGCGGGTTCAAACCCCGCG GGTATCAATA chrXV:353852-354320 - 12 1.11e-07 TAATGTGGAG ATCATCGGTTCAAATCCGATT GGAAGCATTT chrXIV:104590-105121 + 45 1.11e-07 TAATGTGGAG ATCATCGGTTCAAATCCGATT GGAAGCATAT chrVIII:115838-116409 - 41 1.11e-07 TAATGTGGAG ATCATCGGTTCAAATCCGATT GGAAGCATTT chrII:266158-266727 + 31 1.11e-07 TAATGTGGAG ATCATCGGTTCAAATCCGATT GGAAGCATTT chrXIII:572657-573195 - 14 1.21e-07 TAATCTGAAG GTCGAGAGTTCGAACCTCCCC TGGAGCACAT chrX:422391-423536 + 69 1.21e-07 TAATCTGAAG GTCGAGAGTTCGAACCTCCCC TGGAGCACAT chrV:492187-492573 - 29 1.42e-07 GAACCAGAAG ATTCCAGGTTCAAGTCCTGGC GGGGAAGGAT chrIV:619696-620207 - 75 1.42e-07 AGAAG ATTCCAGGTTCAAGTCCTGGC GGGGAAGATT chrXVI:622286-622873 - 18 1.54e-07 TTATCTGGAG GTCCTGTGTTCGATCCACAGA ATTCGCATTT chrXVI:559960-560515 - 18 1.54e-07 TTATCTGGAG GTCCTGTGTTCGATCCACAGA ATTCGCATTT chrVIII:358240-358795 - 18 1.54e-07 TTATCTGGAG GTCCTGTGTTCGATCCACAGA ATTCGCATAT chrIV:1095058-1095673 - 62 1.54e-07 ATATCTGGAG GTCCTGTGTTCGATCCACAGA GTTCGCATTT chrXIII:379050-379635 - 18 1.67e-07 CAATCGAAGG GTTGCAGGTTCAATTCCTGTC CGTTTCAATT chrX:415623-416242 - 56 1.67e-07 CAATCGAAGG GTTGCAGGTTCAATTCCTGTC CGTTTCAATT chrII:347391-347993 + 17 1.81e-07 GACGGTTGTC CGCGCGAGTTCGAACCTCGCA TCCTTCAGTA chrXIII:258783-259497 - 75 3.06e-07 TTGCC CGCGCAGGTTCGAGTCCTGCA GTTGTCGTTA chrVIII:466796-467297 + 38 3.06e-07 TAATGCAAAG GTCGCTAGTTCAATTCTGGCA GGTGGCATTA chrIV:1305378-1306058 + 17 3.06e-07 GGCTTTGGCC CGCGCAGGTTCGAGTCCTGCA GTTGTCGTTA chrIV:437541-438178 + 17 3.06e-07 GGGCTTTGCC CGCGCAGGTTCGAGTCCTGCA GTTGTCGTCA chrII:226975-227379 + 2 3.06e-07 C CGCGCAGGTTCGAGTCCTGCA GTTGTCGTTA chrXIV:632417-632931 + 21 5.01e-07 TAATCGCAAG ATCGTGAGTTCAACCCTCACT GGGGTCGTTT chrXII:975746-976200 - 67 5.01e-07 TAATCGCAAG ATCGTGAGTTCAACCCTCACT GGGGTCGTTT chrVII:730943-731489 + 17 5.01e-07 TAATCGCAAG ATCGTGAGTTCAACCCTCACT GGGGTCGTTT chrXV:274427-275029 + 68 6.13e-07 GGGTTTTACC TGCGCAGGTTCGAATCCTGTC TGTGACGCAT chrXIII:837744-838278 + 28 6.13e-07 AAATCTTGAG ATCGGGCGTTCGACTCGCCCC CGGGAGATAT chrVI:191209-191856 - 38 6.13e-07 GGGTTTTACC TGCGCAGGTTCGAATCCTGTC TGTGACGCAT chrIV:946116-946632 + 49 6.13e-07 AAATCTTGAG ATCGGGCGTTCGACTCGCCCC CGGGAGATTT chrIII:149700-150194 + 67 7.45e-07 TAACCCTGAT GTCCTCGGATCGAAACCGAGC GGCGCTATTA chrXVI:744063-744576 + 59 1.22e-06 TAATGCAAAG GTCGTTAGTTCAATTCTGACA GGTGGCAAAA chrXVI:689360-689877 + 51 1.30e-06 GGGCTCTGCC CGCGCTGGTTCAAATCCTGCT GGTGTCGTAT chrV:288127-288779 - 47 1.30e-06 GGGCTCTGCC CGCGCTGGTTCAAATCCTGCT GGTGTCGTTT chrIII:123284-123823 + 80 1.46e-06 ATGTGGGGCG AGCCGGGACTCGAACCCGGGA chrXIII:352051-353190 + 45 5.19e-06 GACGTCGAAT AGCGACGGTTCAAGTACCAGT CCAGTTGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCMBSGGTTCGATYCCSSKH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631675-632129 3.5e-13 [-1]_79 chrIV:1256800-1257319 2.5e-12 5_[-1]_74 chrXVI:860134-860722 1.2e-11 43_[+1]_36 chrXV:281927-282497 1.2e-11 44_[+1]_35 chrX:531544-532271 1.2e-11 13_[+1]_66 chrVII:845307-846095 1.2e-11 40_[+1]_39 chrVI:180633-181277 1.2e-11 75_[-1]_4 chrIV:83301-83841 1.2e-11 69_[+1]_10 chrII:197246-198125 1.2e-11 [-1]_79 chrIX:197307-197915 3.7e-11 74_[+1]_5 chrIV:1016940-1017510 3.7e-11 38_[-1]_41 chrXVI:209933-210535 1.2e-10 14_[-1]_65 chrXIII:290492-291155 1.2e-10 71_[+1]_8 chrX:115699-116246 1.2e-10 23_[-1]_56 chrVII:541709-542162 1.2e-10 8_[+1]_71 chrV:487114-487654 1.2e-10 3_[-1]_76 chrV:354660-355384 1.2e-10 5_[+1]_74 chrV:176885-177452 1.2e-10 24_[+1]_55 chrIX:370145-370810 1.2e-10 33_[+1]_46 chrXV:663441-664143 2.1e-10 76_[-1]_3 chrXIII:586360-586938 2.1e-10 43_[-1]_36 chrXIII:420301-420892 2.1e-10 48_[-1]_31 chrXIII:372172-372672 2.1e-10 79_[-1] chrXI:307929-308469 2.1e-10 1_[-1]_78 chrX:378209-378596 2.1e-10 53_[+1]_26 chrVII:823341-823740 2.1e-10 37_[+1]_42 chrV:469197-469756 2.1e-10 76_[+1]_3 chrV:438519-439010 2.1e-10 31_[+1]_48 chrIV:1075143-1075781 3.5e-10 66_[-1]_13 chrXVI:768989-769521 4.8e-10 8_[-1]_71 chrXV:438390-439034 4.8e-10 48_[+1]_31 chrXI:578676-579367 4.8e-10 61_[+1]_18 chrVII:115322-115759 4.8e-10 65_[+1]_14 chrVIII:134058-134747 5.6e-10 12_[+1]_67 chrV:130795-131420 5.6e-10 31_[-1]_48 chrIV:802534-803041 5.6e-10 [-1]_79 chrIV:644896-645380 5.6e-10 71_[-1]_8 chrIII:168095-168564 5.6e-10 28_[-1]_51 chrV:311720-312339 8.8e-10 50_[-1]_29 chrXIV:602082-602577 2e-09 78_[+1]_1 chrXIV:569688-570092 2e-09 33_[-1]_46 chrXII:1051870-1052227 2e-09 79_[-1] chrVII:738854-739554 2e-09 13_[+1]_66 chrV:443013-443359 2e-09 72_[-1]_7 chrIX:183205-183733 2e-09 27_[-1]_52 chrIV:667729-668265 2e-09 66_[-1]_13 chrXV:464273-464772 3.9e-09 51_[+1]_28 chrXIII:195933-196306 3.9e-09 5_[-1]_74 chrXII:92323-92936 3.9e-09 43_[+1]_36 chrIV:488408-489169 3.9e-09 65_[-1]_14 chrII:326479-327102 3.9e-09 58_[-1]_21 chrXIII:807973-808579 4.4e-09 26_[-1]_53 chrXIV:96012-96468 5e-09 57_[-1]_22 chrVII:779384-779946 5e-09 44_[+1]_35 chrXVI:581821-582391 6.3e-09 50_[+1]_29 chrXIII:480372-480834 6.3e-09 74_[-1]_5 chrX:414752-415291 6.3e-09 39_[+1]_40 chrVII:121922-122659 6.3e-09 73_[+1]_6 chrV:435552-436051 6.3e-09 7_[-1]_72 chrIX:299962-300522 6.3e-09 42_[-1]_37 chrXI:513046-513608 1e-08 61_[-1]_18 chrX:204542-205050 1e-08 32_[+1]_47 chrIV:884253-884665 1e-08 56_[+1]_23 chrII:405666-406320 1e-08 60_[+1]_19 chrXVI:856713-857177 2.1e-08 51_[+1]_28 chrVII:774119-774647 2.1e-08 60_[+1]_19 chrIV:410144-410779 2.1e-08 12_[+1]_67 chrXIII:131567-132125 4.2e-08 35_[-1]_44 chrXI:162156-162801 4.2e-08 65_[-1]_14 chrX:374163-374846 4.2e-08 58_[-1]_21 chrVII:828443-829007 4.2e-08 54_[-1]_25 chrXVI:435616-436205 7.9e-08 39_[-1]_40 chrII:642848-643253 7.9e-08 13_[-1]_66 chrVII:700166-701270 9.4e-08 60_[+1]_19 chrXV:353852-354320 1.1e-07 11_[-1]_68 chrXIV:104590-105121 1.1e-07 44_[+1]_35 chrVIII:115838-116409 1.1e-07 40_[-1]_39 chrII:266158-266727 1.1e-07 30_[+1]_49 chrXIII:572657-573195 1.2e-07 13_[-1]_66 chrX:422391-423536 1.2e-07 68_[+1]_11 chrV:492187-492573 1.4e-07 28_[-1]_51 chrIV:619696-620207 1.4e-07 74_[-1]_5 chrXVI:622286-622873 1.5e-07 17_[-1]_62 chrXVI:559960-560515 1.5e-07 17_[-1]_62 chrVIII:358240-358795 1.5e-07 17_[-1]_62 chrIV:1095058-1095673 1.5e-07 61_[-1]_18 chrXIII:379050-379635 1.7e-07 17_[-1]_62 chrX:415623-416242 1.7e-07 55_[-1]_24 chrII:347391-347993 1.8e-07 16_[+1]_63 chrXIII:258783-259497 3.1e-07 74_[-1]_5 chrVIII:466796-467297 3.1e-07 37_[+1]_42 chrIV:1305378-1306058 3.1e-07 16_[+1]_63 chrIV:437541-438178 3.1e-07 16_[+1]_63 chrII:226975-227379 3.1e-07 1_[+1]_78 chrXIV:632417-632931 5e-07 20_[+1]_59 chrXII:975746-976200 5e-07 66_[-1]_13 chrVII:730943-731489 5e-07 16_[+1]_63 chrXV:274427-275029 6.1e-07 67_[+1]_12 chrXIII:837744-838278 6.1e-07 27_[+1]_52 chrVI:191209-191856 6.1e-07 37_[-1]_42 chrIV:946116-946632 6.1e-07 48_[+1]_31 chrIII:149700-150194 7.4e-07 66_[+1]_13 chrXVI:744063-744576 1.2e-06 58_[+1]_21 chrXVI:689360-689877 1.3e-06 50_[+1]_29 chrV:288127-288779 1.3e-06 46_[-1]_33 chrIII:123284-123823 1.5e-06 79_[+1] chrXIII:352051-353190 5.2e-06 44_[+1]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCMBSGGTTCGATYCCSSKH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCMBSGGTTCGATYCCSSKH width=21 seqs=107 chrXIV:631675-632129 ( 1) GTCCCGGGTTCGAGTCCCGGC 1 chrIV:1256800-1257319 ( 6) GGCCCGGGTTCGATTCCCGGC 1 chrXVI:860134-860722 ( 44) GCCCCCGGTTCGATTCCGGGC 1 chrXV:281927-282497 ( 45) GCCCCCGGTTCGATTCCGGGC 1 chrX:531544-532271 ( 14) GCCCCCGGTTCGATTCCGGGC 1 chrVII:845307-846095 ( 41) GCCCCCGGTTCGATTCCGGGC 1 chrVI:180633-181277 ( 76) GCCCCCGGTTCGATTCCGGGC 1 chrIV:83301-83841 ( 70) GCCCCCGGTTCGATTCCGGGC 1 chrII:197246-198125 ( 1) GCCCCCGGTTCGATTCCGGGC 1 chrIX:197307-197915 ( 75) GACCGGGGTTCGACTCCCCGC 1 chrIV:1016940-1017510 ( 39) GACCGGGGTTCGACTCCCCGC 1 chrXVI:209933-210535 ( 15) GACCGGGGTTCGACTCCCCGT 1 chrXIII:290492-291155 ( 72) GACCGGGGTTCGACTCCCCGT 1 chrX:115699-116246 ( 24) GACCGGGGTTCGACTCCCCGT 1 chrVII:541709-542162 ( 9) GACCGGGGTTCGACTCCCCGT 1 chrV:487114-487654 ( 4) GACCGGGGTTCGACTCCCCGT 1 chrV:354660-355384 ( 6) GACCGGGGTTCGACTCCCCGT 1 chrV:176885-177452 ( 25) GACCGGGGTTCGACTCCCCGT 1 chrIX:370145-370810 ( 34) GACCGGGGTTCGACTCCCCGT 1 chrXV:663441-664143 ( 77) GTCCCCAGTTCGATCCTGGGC 1 chrXIII:586360-586938 ( 44) GTCCCCAGTTCGATCCTGGGC 1 chrXIII:420301-420892 ( 49) GTCCCCAGTTCGATCCTGGGC 1 chrXIII:372172-372672 ( 80) GTCCCCAGTTCGATCCTGGGC 1 chrXI:307929-308469 ( 2) GTCCCCAGTTCGATCCTGGGC 1 chrX:378209-378596 ( 54) GTCCCCAGTTCGATCCTGGGC 1 chrVII:823341-823740 ( 38) GTCCCCAGTTCGATCCTGGGC 1 chrV:469197-469756 ( 77) GTCCCCAGTTCGATCCTGGGC 1 chrV:438519-439010 ( 32) GTCCCCAGTTCGATCCTGGGC 1 chrIV:1075143-1075781 ( 67) GTCCCGAGTTCGATCCTCGGT 1 chrXVI:768989-769521 ( 9) GTCAGGGGTTCGAGCCCCCTA 1 chrXV:438390-439034 ( 49) GTCAGGGGTTCGAGCCCCCTA 1 chrXI:578676-579367 ( 62) GTCAGGGGTTCGAGCCCCCTA 1 chrVII:115322-115759 ( 66) GTCAGGGGTTCGAGCCCCCTA 1 chrVIII:134058-134747 ( 13) AACCCCGGTTCGAATCCGGGT 1 chrV:130795-131420 ( 32) AACCCCGGTTCGAATCCGGGT 1 chrIV:802534-803041 ( 1) AACCCCGGTTCGAATCCGGGT 1 chrIV:644896-645380 ( 72) AACCCCGGTTCGAATCCGGGT 1 chrIII:168095-168564 ( 29) AACCCCGGTTCGAATCCGGGT 1 chrV:311720-312339 ( 51) GTCATCGGTTCGATTCCGGTT 1 chrXIV:602082-602577 ( 79) ATCAGCGGTTCGATCCCGCTA 1 chrXIV:569688-570092 ( 34) ATCAGCGGTTCGATCCCGCTA 1 chrXII:1051870-1052227 ( 80) ATCAGCGGTTCGATCCCGCTA 1 chrVII:738854-739554 ( 14) ATCAGCGGTTCGATCCCGCTA 1 chrV:443013-443359 ( 73) ATCAGCGGTTCGATCCCGCTA 1 chrIX:183205-183733 ( 28) ATCAGCGGTTCGATCCCGCTA 1 chrIV:667729-668265 ( 67) ATCAGCGGTTCGATCCCGCTA 1 chrXV:464273-464772 ( 52) GCCCTGGGTTCAATTCCCAGC 1 chrXIII:195933-196306 ( 6) GCCCTGGGTTCAATTCCCAGC 1 chrXII:92323-92936 ( 44) GCCCTGGGTTCAATTCCCAGC 1 chrIV:488408-489169 ( 66) ATCCCGAGTTCGAACCTCGGT 1 chrII:326479-327102 ( 59) ATCCCGAGTTCGAACCTCGGT 1 chrXIII:807973-808579 ( 27) AACCCCAGTTCGAATCCGGGT 1 chrXIV:96012-96468 ( 58) GACACGGGTTCGATTCTCGTA 1 chrVII:779384-779946 ( 45) GACACGGGTTCGATTCTCGTA 1 chrXVI:581821-582391 ( 51) GTTAGGGGTTCGAGCCCCCTA 1 chrXIII:480372-480834 ( 75) GTTAGGGGTTCGAGCCCCCTA 1 chrX:414752-415291 ( 40) GTTAGGGGTTCGAGCCCCCTA 1 chrVII:121922-122659 ( 74) GTTAGGGGTTCGAGCCCCCTA 1 chrV:435552-436051 ( 8) GTTAGGGGTTCGAGCCCCCTA 1 chrIX:299962-300522 ( 43) GTTAGGGGTTCGAGCCCCCTA 1 chrXI:513046-513608 ( 62) GATCGGGGTTCAATTCCCCGT 1 chrX:204542-205050 ( 33) GATCGGGGTTCAATTCCCCGT 1 chrIV:884253-884665 ( 57) GTCGTGGGTTCAAACCCCACC 1 chrII:405666-406320 ( 61) GATCGGGGTTCAATTCCCCGT 1 chrXVI:856713-857177 ( 52) GTCTCCGGTTCGATTCCGGAC 1 chrVII:774119-774647 ( 61) GTCTCCGGTTCGATTCCGGAC 1 chrIV:410144-410779 ( 13) GTCTCCGGTTCGATTCCGGAC 1 chrXIII:131567-132125 ( 36) ATTATGGGTTCGACCCCCATC 1 chrXI:162156-162801 ( 66) ATTATGGGTTCGACCCCCATC 1 chrX:374163-374846 ( 59) ATTATGGGTTCGACCCCCATC 1 chrVII:828443-829007 ( 55) ATTATGGGTTCGACCCCCATC 1 chrXVI:435616-436205 ( 40) GTCCTTAGTTCGATCCTGAGT 1 chrII:642848-643253 ( 14) GTCCTTAGTTCGATCCTGAGT 1 chrVII:700166-701270 ( 61) GGCGCGGGTTCAAACCCCGCG 1 chrXV:353852-354320 ( 12) ATCATCGGTTCAAATCCGATT 1 chrXIV:104590-105121 ( 45) ATCATCGGTTCAAATCCGATT 1 chrVIII:115838-116409 ( 41) ATCATCGGTTCAAATCCGATT 1 chrII:266158-266727 ( 31) ATCATCGGTTCAAATCCGATT 1 chrXIII:572657-573195 ( 14) GTCGAGAGTTCGAACCTCCCC 1 chrX:422391-423536 ( 69) GTCGAGAGTTCGAACCTCCCC 1 chrV:492187-492573 ( 29) ATTCCAGGTTCAAGTCCTGGC 1 chrIV:619696-620207 ( 75) ATTCCAGGTTCAAGTCCTGGC 1 chrXVI:622286-622873 ( 18) GTCCTGTGTTCGATCCACAGA 1 chrXVI:559960-560515 ( 18) GTCCTGTGTTCGATCCACAGA 1 chrVIII:358240-358795 ( 18) GTCCTGTGTTCGATCCACAGA 1 chrIV:1095058-1095673 ( 62) GTCCTGTGTTCGATCCACAGA 1 chrXIII:379050-379635 ( 18) GTTGCAGGTTCAATTCCTGTC 1 chrX:415623-416242 ( 56) GTTGCAGGTTCAATTCCTGTC 1 chrII:347391-347993 ( 17) CGCGCGAGTTCGAACCTCGCA 1 chrXIII:258783-259497 ( 75) CGCGCAGGTTCGAGTCCTGCA 1 chrVIII:466796-467297 ( 38) GTCGCTAGTTCAATTCTGGCA 1 chrIV:1305378-1306058 ( 17) CGCGCAGGTTCGAGTCCTGCA 1 chrIV:437541-438178 ( 17) CGCGCAGGTTCGAGTCCTGCA 1 chrII:226975-227379 ( 2) CGCGCAGGTTCGAGTCCTGCA 1 chrXIV:632417-632931 ( 21) ATCGTGAGTTCAACCCTCACT 1 chrXII:975746-976200 ( 67) ATCGTGAGTTCAACCCTCACT 1 chrVII:730943-731489 ( 17) ATCGTGAGTTCAACCCTCACT 1 chrXV:274427-275029 ( 68) TGCGCAGGTTCGAATCCTGTC 1 chrXIII:837744-838278 ( 28) ATCGGGCGTTCGACTCGCCCC 1 chrVI:191209-191856 ( 38) TGCGCAGGTTCGAATCCTGTC 1 chrIV:946116-946632 ( 49) ATCGGGCGTTCGACTCGCCCC 1 chrIII:149700-150194 ( 67) GTCCTCGGATCGAAACCGAGC 1 chrXVI:744063-744576 ( 59) GTCGTTAGTTCAATTCTGACA 1 chrXVI:689360-689877 ( 51) CGCGCTGGTTCAAATCCTGCT 1 chrV:288127-288779 ( 47) CGCGCTGGTTCAAATCCTGCT 1 chrIII:123284-123823 ( 80) AGCCGGGACTCGAACCCGGGA 1 chrXIII:352051-353190 ( 45) AGCGACGGTTCAAGTACCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCMBSGGTTCGATYCCSSKH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 42880 bayes= 9.83185 E= 3.3e-348 -5 -155 169 -405 -65 -103 -65 93 -1339 214 -1339 -96 -24 137 17 -346 -346 120 69 -46 -172 93 135 -246 -52 -335 193 -305 -504 -1339 237 -1339 -504 -435 -1339 167 -1339 -1339 -1339 169 -1339 239 -1339 -1339 -46 -1339 202 -1339 169 -1339 -1339 -1339 -52 -11 -18 51 -504 123 -1339 81 -504 237 -1339 -1339 -305 191 -335 -46 -1339 135 107 -146 -46 73 126 -1339 -346 -18 140 -5 -9 104 -435 0 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCMBSGGTTCGATYCCSSKH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 107 E= 3.3e-348 0.299065 0.065421 0.616822 0.018692 0.196262 0.093458 0.121495 0.588785 0.000000 0.841121 0.000000 0.158879 0.261682 0.495327 0.214953 0.028037 0.028037 0.439252 0.308411 0.224299 0.093458 0.364486 0.485981 0.056075 0.214953 0.018692 0.728972 0.037383 0.009346 0.000000 0.990654 0.000000 0.009346 0.009346 0.000000 0.981308 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.224299 0.000000 0.775701 0.000000 1.000000 0.000000 0.000000 0.000000 0.214953 0.177570 0.168224 0.439252 0.009346 0.448598 0.000000 0.542056 0.009346 0.990654 0.000000 0.000000 0.037383 0.719626 0.018692 0.224299 0.000000 0.485981 0.401869 0.112150 0.224299 0.317757 0.457944 0.000000 0.028037 0.168224 0.504673 0.299065 0.289720 0.392523 0.009346 0.308411 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCMBSGGTTCGATYCCSSKH MEME-1 regular expression -------------------------------------------------------------------------------- [GA]TC[CAG][CGT][GC][GA]GTTC[GA]A[TA][TC]C[CT][CG][GCA][GT][CTA] -------------------------------------------------------------------------------- Time 277.82 secs. ******************************************************************************** ******************************************************************************** MOTIF GCBCARKTGGTAGMGCGYYAGACTYNWAA MEME-2 width = 29 sites = 44 llr = 876 E-value = 4.6e-149 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCBCARKTGGTAGMGCGYYAGACTYNWAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::1861:::1825::::25272:12497 pos.-specific C :8461::2:::::4:8:342217:531:2 probability G 9342:431a91:71a:92:261::22:1: matrix T ::321:67:1822::21542::1a225:1 bits 2.4 * * 2.1 * * 1.9 * ** * 1.7 ** ** *** * Relative 1.4 ** ** *** * Entropy 1.2 ** ** *** ** * (28.7 bits) 1.0 ** * ** ** *** ** * 0.7 *** *** ********* **** * 0.5 ***************** * **** *** 0.2 ******************* ***** *** 0.0 ----------------------------- Multilevel GCGCAATTGGTAGAGCGTTAGACTCCTAA consensus GC GGC C CCTC TAA sequence T GA G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCARKTGGTAGMGCGYYAGACTYNWAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:581821-582391 + 15 1.19e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrX:414752-415291 + 4 1.19e-13 TTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrVII:121922-122659 + 38 1.19e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrV:435552-436051 - 36 1.19e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIX:299962-300522 - 71 1.19e-13 G GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIV:1351960-1353114 - 14 1.19e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIV:1201482-1202017 + 60 1.19e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrXVI:768989-769521 - 60 1.42e-12 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXI:578676-579367 + 3 1.42e-12 TA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrVII:115322-115759 + 7 1.42e-12 TTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXVI:622286-622873 - 65 5.93e-12 GGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrXVI:559960-560515 - 65 5.93e-12 GGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrXIV:374633-375139 + 42 5.93e-12 AGCGGACTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAACTTCGG chrVIII:358240-358795 - 65 5.93e-12 GGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrVIII:237685-238152 - 34 5.93e-12 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrXV:353852-354320 - 40 1.54e-10 TGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXIV:104590-105121 + 9 1.54e-10 CTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrVIII:115838-116409 - 69 1.54e-10 ATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrX:517631-518153 - 6 3.18e-10 TAAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTG chrIII:149700-150194 + 31 3.18e-10 TGAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrXIII:572657-573195 - 42 3.51e-10 AGCTTCAGTA GCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrX:422391-423536 + 33 3.51e-10 TGCTTCAGTA GCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrXVI:435616-436205 - 68 1.44e-09 GTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrII:642848-643253 - 42 1.44e-09 AAGCTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrXVI:744063-744576 + 23 2.05e-09 AAGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrVIII:466796-467297 + 2 2.05e-09 T AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrVII:661505-661992 + 59 2.05e-09 TTGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrXVI:860134-860722 + 1 2.23e-09 . GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXV:281927-282497 + 2 2.23e-09 C GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXV:226409-226949 - 24 2.23e-09 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrX:396514-397070 - 26 2.23e-09 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVI:161991-162470 + 48 2.23e-09 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrIV:83301-83841 + 27 2.23e-09 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrII:197246-198125 - 36 2.23e-09 CAAGAAATAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVII:878530-879059 - 35 2.88e-09 ATGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrVII:287066-287771 - 51 2.88e-09 ATGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrXIII:747685-748225 - 22 4.33e-09 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXIII:131567-132125 - 64 4.33e-09 GCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXVI:856713-857177 + 16 6.94e-09 CGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrXI:219665-220128 + 58 6.94e-09 AGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrVII:774119-774647 + 25 6.94e-09 TGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrXVI:689360-689877 + 6 9.39e-09 CTATG GCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrXV:274427-275029 + 4 1.23e-07 GTG GCCGAGTGGTTAAGGCGATGCCCTGCTAT TTCCTCAGAA chrXII:605141-605617 - 66 3.59e-07 CGTGTA GCTCAGTGGTTAGAGCTTCGTGCTTATAG CAACATTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCARKTGGTAGMGCGYYAGACTYNWAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:581821-582391 1.2e-13 14_[+2]_57 chrX:414752-415291 1.2e-13 3_[+2]_68 chrVII:121922-122659 1.2e-13 37_[+2]_34 chrV:435552-436051 1.2e-13 35_[-2]_36 chrIX:299962-300522 1.2e-13 70_[-2]_1 chrIV:1351960-1353114 1.2e-13 13_[-2]_58 chrIV:1201482-1202017 1.2e-13 59_[+2]_12 chrXVI:768989-769521 1.4e-12 59_[-2]_12 chrXI:578676-579367 1.4e-12 2_[+2]_69 chrVII:115322-115759 1.4e-12 6_[+2]_65 chrXVI:622286-622873 5.9e-12 64_[-2]_7 chrXVI:559960-560515 5.9e-12 64_[-2]_7 chrXIV:374633-375139 5.9e-12 41_[+2]_30 chrVIII:358240-358795 5.9e-12 64_[-2]_7 chrVIII:237685-238152 5.9e-12 33_[-2]_38 chrXV:353852-354320 1.5e-10 39_[-2]_32 chrXIV:104590-105121 1.5e-10 8_[+2]_63 chrVIII:115838-116409 1.5e-10 68_[-2]_3 chrX:517631-518153 3.2e-10 5_[-2]_66 chrIII:149700-150194 3.2e-10 30_[+2]_41 chrXIII:572657-573195 3.5e-10 41_[-2]_30 chrX:422391-423536 3.5e-10 32_[+2]_39 chrXVI:435616-436205 1.4e-09 67_[-2]_4 chrII:642848-643253 1.4e-09 41_[-2]_30 chrXVI:744063-744576 2e-09 22_[+2]_49 chrVIII:466796-467297 2e-09 1_[+2]_70 chrVII:661505-661992 2e-09 58_[+2]_13 chrXVI:860134-860722 2.2e-09 [+2]_71 chrXV:281927-282497 2.2e-09 1_[+2]_70 chrXV:226409-226949 2.2e-09 23_[-2]_48 chrX:396514-397070 2.2e-09 25_[-2]_46 chrVI:161991-162470 2.2e-09 47_[+2]_24 chrIV:83301-83841 2.2e-09 26_[+2]_45 chrII:197246-198125 2.2e-09 35_[-2]_36 chrVII:878530-879059 2.9e-09 34_[-2]_37 chrVII:287066-287771 2.9e-09 50_[-2]_21 chrXIII:747685-748225 4.3e-09 21_[-2]_50 chrXIII:131567-132125 4.3e-09 63_[-2]_8 chrXVI:856713-857177 6.9e-09 15_[+2]_56 chrXI:219665-220128 6.9e-09 57_[+2]_14 chrVII:774119-774647 6.9e-09 24_[+2]_47 chrXVI:689360-689877 9.4e-09 5_[+2]_66 chrXV:274427-275029 1.2e-07 3_[+2]_68 chrXII:605141-605617 3.6e-07 65_[-2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCARKTGGTAGMGCGYYAGACTYNWAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCBCARKTGGTAGMGCGYYAGACTYNWAA width=29 seqs=44 chrXVI:581821-582391 ( 15) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrX:414752-415291 ( 4) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrVII:121922-122659 ( 38) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrV:435552-436051 ( 36) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIX:299962-300522 ( 71) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIV:1351960-1353114 ( 14) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIV:1201482-1202017 ( 60) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrXVI:768989-769521 ( 60) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrXI:578676-579367 ( 3) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrVII:115322-115759 ( 7) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrXVI:622286-622873 ( 65) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXVI:559960-560515 ( 65) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXIV:374633-375139 ( 42) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVIII:358240-358795 ( 65) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVIII:237685-238152 ( 34) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXV:353852-354320 ( 40) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXIV:104590-105121 ( 9) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrVIII:115838-116409 ( 69) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrX:517631-518153 ( 6) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrIII:149700-150194 ( 31) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrXIII:572657-573195 ( 42) GCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrX:422391-423536 ( 33) GCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrXVI:435616-436205 ( 68) GGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrII:642848-643253 ( 42) GGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrXVI:744063-744576 ( 23) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrVIII:466796-467297 ( 2) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrVII:661505-661992 ( 59) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrXVI:860134-860722 ( 1) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:281927-282497 ( 2) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:226409-226949 ( 24) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrX:396514-397070 ( 26) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVI:161991-162470 ( 48) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrIV:83301-83841 ( 27) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrII:197246-198125 ( 36) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVII:878530-879059 ( 35) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrVII:287066-287771 ( 51) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrXIII:747685-748225 ( 22) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXIII:131567-132125 ( 64) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXVI:856713-857177 ( 16) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrXI:219665-220128 ( 58) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrVII:774119-774647 ( 25) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrXVI:689360-689877 ( 6) GCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrXV:274427-275029 ( 4) GCCGAGTGGTTAAGGCGATGCCCTGCTAT 1 chrXII:605141-605617 ( 66) GCTCAGTGGTTAGAGCTTCGTGCTTATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCARKTGGTAGMGCGYYAGACTYNWAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 38592 bayes= 9.32688 E= 4.6e-149 -218 -1210 229 -1210 -1210 197 39 -1210 -1210 93 102 -31 -218 157 -7 -76 128 -49 -1210 -144 88 -1210 118 -1210 -176 -1210 74 94 -276 25 -149 109 -1210 -1210 239 -1210 -1210 -1210 229 -218 -176 -207 -75 128 144 -1210 -1210 -96 -96 -1210 184 -96 76 93 -75 -1210 -1210 -1210 239 -1210 -1210 214 -1210 -96 -276 -1210 221 -218 -276 63 10 56 -60 93 -1210 48 56 -7 -26 -60 -96 25 163 -376 123 -107 -49 -276 -96 193 -1210 -144 -1210 -1210 -1210 169 -118 125 -7 -44 -44 74 25 -44 32 -149 -1210 82 152 -1210 -75 -1210 114 -26 -307 -118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCARKTGGTAGMGCGYYAGACTYNWAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 44 E= 4.6e-149 0.068182 0.000000 0.931818 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.363636 0.386364 0.250000 0.068182 0.568182 0.181818 0.181818 0.750000 0.136364 0.000000 0.113636 0.568182 0.000000 0.431818 0.000000 0.090909 0.000000 0.318182 0.590909 0.045455 0.227273 0.068182 0.659091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.931818 0.068182 0.090909 0.045455 0.113636 0.750000 0.840909 0.000000 0.000000 0.159091 0.159091 0.000000 0.681818 0.159091 0.522727 0.363636 0.113636 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.840909 0.000000 0.159091 0.045455 0.000000 0.886364 0.068182 0.045455 0.295455 0.204545 0.454545 0.204545 0.363636 0.000000 0.431818 0.454545 0.181818 0.159091 0.204545 0.159091 0.227273 0.590909 0.022727 0.727273 0.090909 0.136364 0.045455 0.159091 0.727273 0.000000 0.113636 0.000000 0.000000 0.000000 1.000000 0.136364 0.454545 0.181818 0.227273 0.227273 0.318182 0.227273 0.227273 0.386364 0.068182 0.000000 0.545455 0.886364 0.000000 0.113636 0.000000 0.681818 0.159091 0.022727 0.136364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCARKTGGTAGMGCGYYAGACTYNWAA MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][GCT]CA[AG][TG][TC]GGTAG[AC]GCG[TCG][TCA][AT][GC]ACT[CT][CAGT][TA]AA -------------------------------------------------------------------------------- Time 526.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTNKYKTGGCCBAGTKGKTTAAGGCRYC MEME-3 width = 29 sites = 18 llr = 492 E-value = 1.7e-083 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTNKYKTGGCCBAGTKGKTTAAGGCRYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :122::1:::::1a:1:::1:98:::4:: pos.-specific C ::13251:::7a2::12::3:::::a:48 probability G a922423:aa::4:a:5a5::1:99:522 matrix T ::53436a::3:3::93:56a:211:14: bits 2.4 * ** * * * * 2.1 * ** * * * * 1.9 ** ** * * * *** 1.7 ** *** * ** * * *** * Relative 1.4 ** ***** ** * * *** * Entropy 1.2 ** ***** *** * ** *** * (39.4 bits) 1.0 ** ***** *** ** ****** * 0.7 ** ** ***** ****** ********* 0.5 ** ** ***** **************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GGTCGCTTGGCCGAGTGGGTTAAGGCGTC consensus GTTTG T T T TC ACG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTNKYKTGGCCBAGTKGKTTAAGGCRYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:602082-602577 + 33 8.24e-16 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXIV:569688-570092 - 72 8.24e-16 . GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:734585-735017 + 51 8.24e-16 AACAAAGTTT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrIX:183205-183733 - 66 8.24e-16 ATTCCT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:592322-592863 - 49 1.71e-15 AACATACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrX:617685-618201 + 26 1.71e-15 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrVII:422724-423433 + 64 1.27e-14 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAA chrXII:962816-963336 - 1 1.89e-14 TATTATCGAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC chrXI:83959-84450 + 54 1.89e-14 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrX:424258-424726 - 45 1.89e-14 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrVII:700166-701270 + 7 1.09e-13 TGAATT GGTACTCTGGCCGAGTGGTCTAAGGCGTC AGGTCGAGGT chrXI:307929-308469 - 40 4.51e-13 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrX:378209-378596 + 8 4.51e-13 ATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:469197-469756 + 31 4.51e-13 AGAAATAATT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:74380-74896 + 36 5.91e-12 ATAGCAATTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrIII:127491-127919 + 61 5.91e-12 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrI:138944-139395 + 33 5.60e-11 CAATTAGTAC GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXIV:631675-632129 - 37 1.98e-10 AACTTCTACC GGGCGTGTGGTCTAGAGGTATGATTCTCG CTTAGGGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTNKYKTGGCCBAGTKGKTTAAGGCRYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602082-602577 8.2e-16 32_[+3]_39 chrXIV:569688-570092 8.2e-16 71_[-3] chrXII:734585-735017 8.2e-16 50_[+3]_21 chrIX:183205-183733 8.2e-16 65_[-3]_6 chrXII:592322-592863 1.7e-15 48_[-3]_23 chrX:617685-618201 1.7e-15 25_[+3]_46 chrVII:422724-423433 1.3e-14 63_[+3]_8 chrXII:962816-963336 1.9e-14 [-3]_71 chrXI:83959-84450 1.9e-14 53_[+3]_18 chrX:424258-424726 1.9e-14 44_[-3]_27 chrVII:700166-701270 1.1e-13 6_[+3]_65 chrXI:307929-308469 4.5e-13 39_[-3]_32 chrX:378209-378596 4.5e-13 7_[+3]_64 chrV:469197-469756 4.5e-13 30_[+3]_41 chrXI:74380-74896 5.9e-12 35_[+3]_36 chrIII:127491-127919 5.9e-12 60_[+3]_11 chrI:138944-139395 5.6e-11 32_[+3]_39 chrXIV:631675-632129 2e-10 36_[-3]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTNKYKTGGCCBAGTKGKTTAAGGCRYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTNKYKTGGCCBAGTKGKTTAAGGCRYC width=29 seqs=18 chrXIV:602082-602577 ( 33) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:569688-570092 ( 72) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:734585-735017 ( 51) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrIX:183205-183733 ( 66) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:592322-592863 ( 49) GGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrX:617685-618201 ( 26) GGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrVII:422724-423433 ( 64) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXII:962816-963336 ( 1) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXI:83959-84450 ( 54) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrX:424258-424726 ( 45) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrVII:700166-701270 ( 7) GGTACTCTGGCCGAGTGGTCTAAGGCGTC 1 chrXI:307929-308469 ( 40) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrX:378209-378596 ( 8) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrV:469197-469756 ( 31) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXI:74380-74896 ( 36) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrIII:127491-127919 ( 61) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrI:138944-139395 ( 33) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXIV:631675-632129 ( 37) GGGCGTGTGGTCTAGAGGTATGATTCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTNKYKTGGCCBAGTKGKTTAAGGCRYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 38592 bayes= 12.4702 E= 1.7e-083 -1081 -1081 239 -1081 -147 -1081 222 -1081 -89 -78 22 69 -89 80 -20 11 -1081 -20 122 33 -1081 139 -20 11 -147 -178 54 85 -1081 -1081 -1081 169 -1081 -1081 239 -1081 -1081 -1081 239 -1081 -1081 192 -1081 -15 -1081 239 -1081 -1081 -147 22 103 -15 169 -1081 -1081 -1081 -1081 -1081 239 -1081 -247 -178 -1081 152 -1081 -20 139 11 -1081 -1081 239 -1081 -1081 -1081 139 69 -147 54 -1081 98 -1081 -1081 -1081 169 152 -1081 -78 -1081 143 -1081 -1081 -89 -1081 -1081 222 -147 -1081 -1081 222 -147 -1081 239 -1081 -1081 33 -1081 139 -147 -1081 103 -20 52 -1081 203 22 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTNKYKTGGCCBAGTKGKTTAAGGCRYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 18 E= 1.7e-083 0.000000 0.000000 1.000000 0.000000 0.111111 0.000000 0.888889 0.000000 0.166667 0.111111 0.222222 0.500000 0.166667 0.333333 0.166667 0.333333 0.000000 0.166667 0.444444 0.388889 0.000000 0.500000 0.166667 0.333333 0.111111 0.055556 0.277778 0.555556 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.722222 0.000000 0.277778 0.000000 1.000000 0.000000 0.000000 0.111111 0.222222 0.388889 0.277778 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.055556 0.055556 0.000000 0.888889 0.000000 0.166667 0.500000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.111111 0.277778 0.000000 0.611111 0.000000 0.000000 0.000000 1.000000 0.888889 0.000000 0.111111 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.888889 0.111111 0.000000 1.000000 0.000000 0.000000 0.388889 0.000000 0.500000 0.111111 0.000000 0.388889 0.166667 0.444444 0.000000 0.777778 0.222222 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTNKYKTGGCCBAGTKGKTTAAGGCRYC MEME-3 regular expression -------------------------------------------------------------------------------- GG[TG][CT][GT][CT][TG]TGG[CT]C[GTC]AGT[GT]G[GT][TC]TAAGGC[GA][TC][CG] -------------------------------------------------------------------------------- Time 771.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:32486-33278 1.70e-01 100 chrI:71701-73675 3.62e-02 100 chrI:81858-82354 3.16e-01 100 chrI:138944-139395 3.30e-08 32_[+3(5.60e-11)]_39 chrI:142141-143694 1.03e-01 100 chrI:166171-166653 9.47e-01 100 chrI:181126-181579 1.68e-01 100 chrI:182187-183190 1.83e-01 100 chrII:9438-10027 9.24e-01 100 chrII:36235-36885 4.83e-01 100 chrII:44912-46723 9.59e-01 100 chrII:59510-61310 4.97e-01 100 chrII:87910-88600 8.38e-01 100 chrII:88907-89476 9.78e-01 100 chrII:89658-90103 9.91e-01 100 chrII:164784-165507 2.67e-01 100 chrII:167617-169712 5.14e-01 100 chrII:181274-181691 3.81e-01 100 chrII:197246-198125 3.13e-14 [-1(1.20e-11)]_14_[-2(2.23e-09)]_36 chrII:214794-219157 3.95e-01 100 chrII:226975-227379 9.35e-05 1_[+1(3.06e-07)]_78 chrII:255057-255723 2.21e-01 100 chrII:256284-257711 9.21e-01 100 chrII:266158-266727 6.59e-04 30_[+1(1.11e-07)]_49 chrII:301127-301665 7.71e-02 100 chrII:326479-327102 2.18e-05 58_[-1(3.90e-09)]_21 chrII:332179-334140 2.45e-01 100 chrII:347391-347993 7.57e-06 16_[+1(1.81e-07)]_18_[-2(5.71e-05)]_\ 16 chrII:350571-351068 2.48e-01 100 chrII:405666-406320 3.24e-05 60_[+1(1.00e-08)]_19 chrII:412930-415284 9.66e-01 100 chrII:415501-415994 7.43e-01 100 chrII:476900-477775 5.57e-01 100 chrII:478958-479438 4.47e-01 100 chrII:592269-593440 3.42e-01 100 chrII:603960-607135 6.74e-01 100 chrII:612258-613982 6.84e-01 100 chrII:642848-643253 5.07e-10 13_[-1(7.92e-08)]_7_[-2(1.44e-09)]_\ 30 chrII:644820-645464 3.39e-01 100 chrII:680294-682303 7.48e-01 100 chrIII:82-1074 2.00e-02 15_[-3(8.06e-05)]_56 chrIII:30551-31156 5.97e-01 100 chrIII:78418-78887 4.19e-01 100 chrIII:82367-82671 1.08e-01 100 chrIII:90849-91135 9.65e-02 100 chrIII:107117-107825 9.93e-01 100 chrIII:123284-123823 2.84e-03 79_[+1(1.46e-06)] chrIII:127491-127919 9.20e-08 60_[+3(5.91e-12)]_11 chrIII:142095-142964 5.87e-01 100 chrIII:149700-150194 1.75e-10 30_[+2(3.18e-10)]_7_[+1(7.45e-07)]_\ 13 chrIII:150987-151526 6.40e-01 100 chrIII:162547-163936 7.87e-01 100 chrIII:168095-168564 1.02e-06 28_[-1(5.59e-10)]_51 chrIII:177064-178790 1.55e-01 100 chrIII:227732-228551 6.08e-01 100 chrIII:295293-295967 7.23e-01 100 chrIV:44004-44547 1.99e-02 100 chrIV:83301-83841 3.13e-14 26_[+2(2.23e-09)]_14_[+1(1.20e-11)]_\ 10 chrIV:116292-118877 7.33e-01 100 chrIV:125291-126146 1.15e-01 18_[+1(6.38e-05)]_61 chrIV:129198-131056 9.80e-01 100 chrIV:216599-218086 1.24e-02 100 chrIV:221149-222371 3.00e-01 100 chrIV:229358-230790 3.78e-01 100 chrIV:306181-310171 7.71e-01 100 chrIV:321619-321964 2.68e-01 100 chrIV:322187-323586 4.40e-01 100 chrIV:340143-341751 8.27e-01 100 chrIV:358004-358579 6.27e-01 100 chrIV:358841-359804 9.67e-01 100 chrIV:410144-410779 6.49e-06 12_[+1(2.12e-08)]_67 chrIV:411111-411717 6.23e-02 100 chrIV:417008-417425 9.84e-01 100 chrIV:433972-435116 7.56e-01 100 chrIV:437541-438178 1.56e-03 16_[+1(3.06e-07)]_63 chrIV:463276-470129 7.17e-01 100 chrIV:488408-489169 3.63e-05 65_[-1(3.90e-09)]_14 chrIV:489682-492893 2.15e-01 100 chrIV:519656-520117 9.97e-01 100 chrIV:520645-521187 8.70e-01 100 chrIV:538872-539540 8.96e-02 100 chrIV:568636-569541 5.23e-01 100 chrIV:578811-580752 9.46e-01 100 chrIV:589922-592016 6.59e-01 100 chrIV:600697-602384 5.62e-01 100 chrIV:619696-620207 8.48e-04 74_[-1(1.42e-07)]_5 chrIV:644896-645380 9.76e-06 71_[-1(5.59e-10)]_8 chrIV:667729-668265 8.25e-06 66_[-1(2.04e-09)]_13 chrIV:802534-803041 1.02e-06 [-1(5.59e-10)]_79 chrIV:835733-837947 6.85e-01 100 chrIV:884253-884665 5.72e-06 56_[+1(1.00e-08)]_23 chrIV:915386-916246 4.26e-02 100 chrIV:946116-946632 1.92e-03 48_[+1(6.13e-07)]_31 chrIV:980697-981161 8.73e-01 100 chrIV:992720-993505 4.98e-01 100 chrIV:1012924-1013976 4.36e-01 100 chrIV:1016940-1017510 1.63e-07 38_[-1(3.74e-11)]_41 chrIV:1075143-1075781 3.74e-06 66_[-1(3.46e-10)]_13 chrIV:1095058-1095673 2.51e-04 61_[-1(1.54e-07)]_18 chrIV:1150696-1151203 8.08e-03 13_[-3(4.89e-05)]_58 chrIV:1164891-1165198 3.01e-01 100 chrIV:1175744-1176134 9.19e-01 100 chrIV:1201482-1202017 3.56e-09 59_[+2(1.19e-13)]_12 chrIV:1236511-1238499 1.94e-01 100 chrIV:1239348-1240205 9.26e-01 100 chrIV:1256800-1257319 1.45e-09 5_[-1(2.45e-12)]_74 chrIV:1277839-1279875 3.04e-01 100 chrIV:1300442-1302598 7.29e-01 100 chrIV:1305378-1306058 1.23e-03 16_[+1(3.06e-07)]_63 chrIV:1351960-1353114 2.98e-09 13_[-2(1.19e-13)]_58 chrIV:1354365-1356046 3.83e-01 100 chrIV:1359208-1361212 1.39e-01 100 chrIV:1401093-1403391 7.56e-02 100 chrIV:1449822-1451263 5.41e-03 100 chrIV:1451442-1451643 8.81e-01 100 chrIV:1461384-1461847 6.96e-01 100 chrIV:1487588-1490370 9.71e-01 100 chrIX:68186-69943 9.91e-01 100 chrIX:98167-100212 9.87e-01 100 chrIX:174872-175384 8.84e-01 100 chrIX:183205-183733 1.45e-17 27_[-1(2.04e-09)]_17_[-3(8.24e-16)]_\ 6 chrIX:197307-197915 1.63e-07 74_[+1(3.74e-11)]_5 chrIX:210658-211399 9.17e-02 100 chrIX:248466-249501 2.36e-01 100 chrIX:254172-254596 6.16e-01 100 chrIX:255125-257149 8.67e-01 100 chrIX:257363-258221 9.28e-01 100 chrIX:299962-300522 7.48e-15 42_[-1(6.33e-09)]_7_[-2(1.19e-13)]_\ 1 chrIX:315986-318345 9.25e-01 100 chrIX:323413-324382 1.15e-01 100 chrIX:325742-326234 6.46e-01 100 chrIX:335970-336646 1.40e-02 31_[-2(5.52e-06)]_40 chrIX:370145-370810 1.10e-07 33_[+1(1.22e-10)]_46 chrV:53464-54049 1.21e-01 100 chrV:61040-62163 3.53e-01 100 chrV:66723-69328 7.24e-01 100 chrV:85068-87006 5.39e-02 100 chrV:99859-100352 8.24e-01 100 chrV:117164-118341 1.82e-02 24_[-2(3.58e-05)]_47 chrV:130795-131420 4.34e-07 31_[-1(5.59e-10)]_48 chrV:135160-136074 9.47e-01 100 chrV:138422-139991 3.79e-02 100 chrV:140182-141319 1.04e-01 100 chrV:176885-177452 1.41e-07 24_[+1(1.22e-10)]_55 chrV:207357-207947 4.42e-01 100 chrV:249780-250564 5.00e-02 100 chrV:269197-270673 1.00e+00 100 chrV:288127-288779 2.25e-03 46_[-1(1.30e-06)]_33 chrV:305747-307710 7.70e-01 100 chrV:311720-312339 6.68e-06 50_[-1(8.79e-10)]_29 chrV:321962-323041 5.20e-01 100 chrV:354660-355384 1.75e-07 5_[+1(1.22e-10)]_74 chrV:362142-363307 6.69e-01 100 chrV:395859-398106 1.62e-01 100 chrV:422790-425351 9.08e-01 100 chrV:430968-431941 1.00e+00 100 chrV:434374-434977 1.11e-01 11_[+1(4.96e-05)]_68 chrV:435552-436051 7.48e-15 7_[-1(6.33e-09)]_7_[-2(1.19e-13)]_\ 36 chrV:438519-439010 1.67e-06 31_[+1(2.08e-10)]_48 chrV:441739-442677 6.45e-01 100 chrV:443013-443359 4.07e-06 72_[-1(2.04e-09)]_7 chrV:469197-469756 1.39e-15 30_[+3(4.51e-13)]_17_[+1(2.08e-10)]_\ 3 chrV:487114-487654 3.17e-08 3_[-1(1.22e-10)]_76 chrV:492187-492573 1.67e-06 28_[-1(1.42e-07)]_7_[-2(2.48e-05)]_\ 15 chrV:550897-551610 2.05e-01 100 chrVI:53211-54425 3.63e-01 100 chrVI:63890-65417 4.47e-01 100 chrVI:82522-84456 8.64e-02 100 chrVI:95393-95924 2.03e-01 100 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chrXV:1003954-1004931 9.71e-01 100 chrXV:1025733-1026061 7.46e-01 100 chrXV:1027779-1029541 2.37e-01 100 chrXVI:55827-56433 7.07e-01 100 chrXVI:75399-76852 8.75e-01 100 chrXVI:172868-174134 1.00e+00 100 chrXVI:188332-188935 8.81e-02 100 chrXVI:209933-210535 3.17e-08 14_[-1(1.22e-10)]_65 chrXVI:279943-280232 7.19e-01 100 chrXVI:280585-283233 1.94e-01 100 chrXVI:302607-304345 2.63e-01 100 chrXVI:338578-339297 6.24e-02 100 chrXVI:377928-379035 6.00e-01 100 chrXVI:404488-407876 7.55e-01 100 chrXVI:424098-425639 4.35e-01 100 chrXVI:432587-434358 1.44e-01 100 chrXVI:435616-436205 1.05e-10 39_[-1(7.92e-08)]_7_[-2(1.44e-09)]_\ 4 chrXVI:519788-520555 2.85e-01 100 chrXVI:559960-560515 6.23e-13 17_[-1(1.54e-07)]_26_[-2(5.93e-12)]_\ 7 chrXVI:572175-572711 9.43e-01 100 chrXVI:581821-582391 7.41e-15 14_[+2(1.19e-13)]_7_[+1(6.33e-09)]_\ 29 chrXVI:622286-622873 6.23e-13 17_[-1(1.54e-07)]_26_[-2(5.93e-12)]_\ 7 chrXVI:645360-646079 1.84e-01 100 chrXVI:653181-653421 6.36e-01 100 chrXVI:653855-655044 5.74e-01 100 chrXVI:689360-689877 3.74e-08 5_[+2(9.39e-09)]_16_[+1(1.30e-06)]_\ 29 chrXVI:699821-700729 3.52e-01 100 chrXVI:718344-719966 3.74e-01 100 chrXVI:731625-732375 5.11e-01 100 chrXVI:744063-744576 1.99e-09 22_[+2(2.05e-09)]_7_[+1(1.22e-06)]_\ 21 chrXVI:768989-769521 1.10e-15 8_[-1(4.79e-10)]_30_[-2(1.42e-12)]_\ 12 chrXVI:775614-776115 8.01e-01 100 chrXVI:794443-796080 8.81e-01 100 chrXVI:810575-811296 4.29e-01 100 chrXVI:819303-820281 2.18e-01 100 chrXVI:856713-857177 1.32e-11 15_[+2(6.94e-09)]_7_[+1(2.12e-08)]_\ 28 chrXVI:860134-860722 3.13e-14 [+2(2.23e-09)]_14_[+1(1.20e-11)]_36 chrXVI:866500-866860 7.63e-01 100 chrXVI:879570-880581 4.53e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************