******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--NRG1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:332181-333974 1.0000 100 chrVIII:145893-146475 1.0000 100 chrXIV:783695-784323 1.0000 100 chrVII:115322-115727 1.0000 100 chrXI:158225-159581 1.0000 100 chrI:166170-166602 1.0000 100 chrIV:1354324-1356016 1.0000 100 chrXVI:821617-822224 1.0000 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chrXIV:102574-103235 1.0000 100 chrIII:137752-139004 1.0000 100 chrXV:1091135-1091290 1.0000 100 chrXI:307969-308419 1.0000 100 chrX:651864-651964 1.0000 100 chrIV:1269888-1270902 1.0000 100 chrII:604071-607135 1.0000 100 chrXV:216286-216707 1.0000 100 chrIV:1150705-1151198 1.0000 100 chrVI:136829-137708 1.0000 100 chrIII:73-1721 1.0000 100 chrVII:845460-846021 1.0000 100 chrI:182096-183191 1.0000 100 chrV:487006-487553 1.0000 100 chrX:538010-538110 1.0000 100 chrXIII:388830-390962 1.0000 100 chrI:185401-186287 1.0000 100 chrII:136050-136330 1.0000 100 chrXV:113503-113885 1.0000 100 chrII:350611-351052 1.0000 100 chrXIII:747672-748154 1.0000 100 chrXV:384693-385049 1.0000 100 chrIX:388133-388835 1.0000 100 chrXIII:320955-321326 1.0000 100 chrXV:226433-226898 1.0000 100 chrIV:76864-77373 1.0000 100 chrX:374182-374282 1.0000 100 chrV:311726-312296 1.0000 100 chrVII:483317-483691 1.0000 100 chrXIII:731760-733403 1.0000 100 chrVII:779381-779928 1.0000 100 chrXV:444610-446390 1.0000 100 chrXVI:280597-281914 1.0000 100 chrVII:786598-788751 1.0000 100 chrXIII:480397-480829 1.0000 100 chrIX:141815-142466 1.0000 100 chrIII:268783-269016 1.0000 100 chrXII:167713-168248 1.0000 100 chrXII:627943-628637 1.0000 100 chrXVI:645305-646165 1.0000 100 chrII:466328-466891 1.0000 100 chrII:89670-90405 1.0000 100 chrV:423083-424348 1.0000 100 chrIV:1016975-1017502 1.0000 100 chrXIV:632417-632915 1.0000 100 chrXV:673221-674091 1.0000 100 chrX:348876-348976 1.0000 100 chrXI:518818-521089 1.0000 100 chrIV:1095169-1095664 1.0000 100 chrXII:83867-84345 1.0000 100 chrIV:836480-837098 1.0000 100 chrV:288150-288747 1.0000 100 chrXII:837676-839400 1.0000 100 chrXV:670899-671951 1.0000 100 chrIV:340355-341670 1.0000 100 chrV:207349-207672 1.0000 100 chrVIII:555785-556923 1.0000 100 chrIX:386282-387447 1.0000 100 chrXV:779695-780998 1.0000 100 chrXIV:426707-427168 1.0000 100 chrXV:160335-160713 1.0000 100 chrXIII:372176-372663 1.0000 100 chrIV:980749-981162 1.0000 100 chrVII:291716-291937 1.0000 100 chrV:354695-355320 1.0000 100 chrXIII:407814-408810 1.0000 100 chrV:424625-425218 1.0000 100 chrIX:210657-211013 1.0000 100 chrX:223711-223811 1.0000 100 chrVII:706904-707188 1.0000 100 chrXIII:498740-500729 1.0000 100 chrXVI:432541-434384 1.0000 100 chrV:143893-144100 1.0000 100 chrVI:157839-158223 1.0000 100 chrIX:315769-318617 1.0000 100 chrVII:531275-532253 1.0000 100 chrXV:514224-514708 1.0000 100 chrXIV:738829-740160 1.0000 100 chrV:225507-225717 1.0000 100 chrXV:234214-234824 1.0000 100 chrIV:1461468-1461852 1.0000 100 chrIV:1362096-1362603 1.0000 100 chrV:174432-175150 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--NRG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--NRG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--NRG1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--NRG1/background): A 0.307 C 0.193 G 0.193 T 0.307 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAWYGMYCHMDVCSGGRWTCGAACC MEME-1 width = 29 sites = 84 llr = 1503 E-value = 1.4e-283 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAWYGMYCHMDVCSGGRWTCGAACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8879775113123333:13:55::19a:: pos.-specific C ::1:::14:44645:454:::1:8:::a8 probability G 1121111:82111242257a52::9:::: matrix T 111112351141213:2::::2a2::::2 bits 2.4 * * 2.1 * * 1.9 * * * 1.7 * * * * Relative 1.4 * ****** Entropy 1.2 * ** ******* (25.8 bits) 0.9 * * *** ******* 0.7 ** * * **** ******* 0.5 ****** *** * ******* ******* 0.2 ************ ******** ******* 0.0 ----------------------------- Multilevel AAAAAAATGCTCCCGCCGGGAATCGAACC consensus TC AC AATAGCA GT T T sequence G T AGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGMYCHMDVCSGGRWTCGAACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrV:550952-551580 + 62 3.03e-13 ACGATTTTCA AAAAAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXIV:569692-570084 + 22 3.72e-12 AATGCAAAAA AAAAGAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrV:443062-443362 + 33 4.38e-12 GATTTTCAAA AAAAATATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrX:531609-531709 - 26 5.16e-12 AAAAAAAGAA AAGAAACTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrIV:667767-668259 + 37 7.10e-12 AGGAGAAAAA ATAAAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXVI:880085-880564 + 15 8.31e-12 AAGAAAGAGA AAAGAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrVII:828478-828981 + 37 1.32e-11 TTTTATTGCA AAAAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrVII:845460-846021 - 8 3.20e-11 GGGGATGGAA AAAACATTGCGCAAGCCCGGAATCGAACC GGGGGCC chrXIII:372176-372663 + 69 3.69e-11 ATAAAGTGCT AAAAAAATGATTTCGCCCAGGATCGAACT GGG chrXIII:586374-586907 + 39 3.69e-11 GGATGTCTTC AAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXIII:747672-748154 + 22 4.25e-11 AAAACAATAC TAAAAAACACTCACGATGGGGGTCGAACC CATAATCTTC chrV:435444-436019 + 64 4.25e-11 CAAAAAGTTA AAAAGAAAGCCCTGTAGGGGGCTCGAACC CCTAACCT chrXI:162191-162736 + 67 4.25e-11 ACTGCTGGTG TAAAAAACACTCACGATGGGGGTCGAACC CATAA chrXIII:480397-480829 + 51 5.62e-11 GAATCTTCAA AAAAAGAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXII:214652-215067 + 67 5.62e-11 TAAAAGTAAA AAATAAATGGACGCAACCGGAATCGAACC GATGA chrX:390823-390923 + 4 6.45e-11 TAT AAAAATATGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrV:288150-288747 + 38 7.40e-11 TCTAACAATA AAAAAAACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrX:378202-378302 - 69 8.47e-11 AAC AAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrV:438495-438985 - 62 8.47e-11 TTTTCGAAAA AAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrIX:300018-300498 + 13 9.68e-11 GAAAATGGTA AAAAGATAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrII:266175-266743 - 20 9.68e-11 TTCAGTATTC AAAAAAATGCTTCCAATCGGATTTGAACC GATGATCTCC chrXII:448397-448975 + 7 1.11e-10 TTCGCA AAAAAGAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrXII:167713-168248 + 7 1.44e-10 AAAGAA AAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXIII:258904-259451 + 24 1.44e-10 CAAGAGGCAA AAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXIV:632417-632915 - 35 1.64e-10 TGAAATAAGA AAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrX:374182-374282 + 14 1.64e-10 TCACGGAAGA AACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrII:405683-406226 - 24 1.64e-10 TCACGGAAGA AACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrVI:180686-181270 + 39 1.64e-10 ATCCTTAAAA AAAGGACTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrIV:568644-569247 - 37 1.64e-10 TCACGGAAGA AACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrX:355187-355287 - 5 1.64e-10 TCACGGAAGA AACAAAGCACTCACGATGGGGGTCGAACC CATA chrXIII:131594-132113 + 15 1.64e-10 AAAAAGAAGA AACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrIV:1016975-1017502 + 12 2.11e-10 AGAAAATAAA AAAGAAACTCCGAAGCGGGGAGTCGAACC CCGGTCTCCA chrIII:168131-168547 + 5 2.11e-10 TATT CAAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrVIII:134135-134613 - 47 2.11e-10 TTCATTTTAG CAAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrX:197132-197232 + 67 2.71e-10 TGAGAACAAA AAGAAATTGGACGAGTCCGGAATCGAACC GGAGA chrIX:336083-336632 + 35 3.07e-10 AGTTATGGTA AAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXIII:463310-463884 - 57 3.07e-10 TGGTCTGATA AAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXIII:420276-420855 + 66 3.93e-10 AACGGCTGAG ATAAAAATGATTTCGCCCAGGATCGAACT GGGGAC chrXIII:320955-321326 + 50 4.43e-10 GCCAAAAAAA TAAAAAATGGACGAGTCCGGAATCGAACC GGAGACCTCT chrV:469237-469797 - 42 4.43e-10 TTGGCATATT TAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrIV:619702-620189 + 67 5.00e-10 AAAAATGTAT AAAAAATCTTCCCCGCCAGGACTTGAACC TGGAA chrVII:774127-774710 - 32 5.63e-10 TTAAAAGTAA AAAAATTTGGACGAGTCCGGAATCGAACC GGAGACCTCT chrVII:823338-823720 - 55 5.63e-10 ATGTAATCTT CAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXIII:362936-363325 - 34 8.97e-10 TTGAAAAAAA AAGAAAATGCCATCTCCTAGAATCGAACC AGGGTTTCAT chrIV:437550-438127 - 44 1.01e-09 TGGGAATATA AAAATGACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrIV:520700-521420 - 12 1.41e-09 GGGTTAAAAA ATAGAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrIV:644921-645376 + 48 1.41e-09 GAAGCCACAG TTAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrIV:980749-981162 + 62 1.57e-09 AAAATTTTTG GTAAAAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrIV:884243-884661 - 70 1.57e-09 AA GAGAAAGTGCTCGAGGTGGGGTTTGAACC CACGACGGTC chrXII:426913-427494 - 29 1.76e-09 AGAAGCTTAA AAAAATTCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrVII:730953-731475 - 25 1.96e-09 TCATTTCAAG CAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrIV:83334-83826 - 67 1.96e-09 AAAAA TTAAACTTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrX:422645-422745 - 30 2.18e-09 CACAAAAAAA GAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrXV:438429-439024 - 41 2.70e-09 CTGACAAAAA TAAAGAACTCCTCATAGGGGGCTCGAACC CCTGACATTT chrXVI:768982-769482 + 18 2.70e-09 TGCAAAAAAG TAAAGAACTCCTCATAGGGGGCTCGAACC CCTGACATTT chrVI:226500-226921 + 21 2.70e-09 AGAGAAAAAA AGAGATAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXII:975772-976203 + 39 3.01e-09 AATGCAAAAA AAATAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrII:326502-327156 + 6 3.70e-09 AAATA AAGAGTTTGATCCAACCGAGGTTCGAACT CGGGATCTTC chrV:354695-355320 - 27 5.04e-09 ATGATGTCAA AAAAGTACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrX:415705-415805 + 2 5.04e-09 A AATAAATTGAAACGGACAGGAATTGAACC TGCAACCCTT chrXIII:378947-379609 + 68 5.04e-09 AGGGCTAAAA AATAAATTGAAACGGACAGGAATTGAACC TGCA chrXV:274483-275004 - 59 7.51e-09 TTCACAAAAA AGAAATGCGTCACAGACAGGATTCGAACC TGCGCAGGTA chrVII:541712-542172 - 8 7.51e-09 AGGTAAGAAA AAGAACACTCCGATACGGGGAGTCGAACC CCGGTCT chrIV:488471-489151 + 29 9.13e-09 TACGATAAAA AAGATTCTGATCCAACCGAGGTTCGAACT CGGGATCTTC chrXV:464281-464735 - 72 1.01e-08 . AATAAAAGGGGCGAGCTGGGAATTGAACC CAGGGCCTCT chrXVI:744076-744598 - 47 2.78e-08 CTTTAGGGAA AAAATTTTGCCACCTGTCAGAATTGAACT AACGACCTTT chrV:492161-492565 + 32 2.78e-08 TTAAAAGAAA AATAATCCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXIV:725746-726581 + 14 3.62e-08 AAAATAAAAA AAAATACTGAAGGATGCGAGGTTCGAACT CGCGCGGACA chrIII:90850-91138 - 7 3.95e-08 GTTGAGGAAA AAAATAATGGTTGCTAAGAGATTCGAACT CTTGCA chrXVI:55864-56432 + 64 5.11e-08 TGGGGAAAAA AATTAATTGAAACGGACAGGAATTGAACC TGCAACCC chrV:311726-312296 + 55 8.39e-08 GTACAAAAAG ATTTCATTGGACGCAACCGGAATCGAACC GATGACCTCT chrXIII:195928-196301 + 62 9.86e-08 CTGTTTAATC AGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrVIII:466812-467311 - 29 9.86e-08 AAATAATACC GGTATAATGCCACCTGCCAGAATTGAACT AGCGACCTTT chrI:138942-139358 - 68 9.86e-08 ATTC AGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrXII:92265-92906 - 29 9.86e-08 CTGTTTATTC AGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrXIV:546553-547684 - 42 9.86e-08 CTGTTTTGGC AGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrVII:779381-779928 - 62 1.84e-07 AATTAAAAAA GTAATCTTGAGCGGTACGAGAATCGAACC CGTGTCCCCA chrXIII:837745-838251 - 47 8.61e-07 TCAAAAGTAA AAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrXV:722987-724696 + 44 8.61e-07 AGATGAAGCT GATAGAATGTTGGATATGGGTTTCGAACC TCAAATTAGA chrXI:578682-579323 + 68 1.11e-06 TGCTTAAGCA AGGATACCGAAATGTCAGGGGTTCGAGCC CCCT chrVII:115322-115727 + 69 1.11e-06 TGCTTAAGCA AGGATACCGAAATGTCAGGGGTTCGAGCC CCC chrXII:710611-710902 + 3 1.82e-06 AA AAAAAATACCAACAAGCAGGAATCACACC CACGCATCTC chrIII:149722-150190 - 64 3.44e-06 GTTCAAAA AATTTAATAGCGCCGCTCGGTTTCGATCC GAGGACATCA chrXVI:559971-560499 + 6 3.64e-06 CAAAA ATAGAAATGCGAATTCTGTGGATCGAACA CAGGACCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGMYCHMDVCSGGRWTCGAACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:550952-551580 3e-13 61_[+1]_10 chrXIV:569692-570084 3.7e-12 21_[+1]_50 chrV:443062-443362 4.4e-12 32_[+1]_39 chrX:531609-531709 5.2e-12 25_[-1]_46 chrIV:667767-668259 7.1e-12 36_[+1]_35 chrXVI:880085-880564 8.3e-12 14_[+1]_57 chrVII:828478-828981 1.3e-11 36_[+1]_35 chrVII:845460-846021 3.2e-11 7_[-1]_64 chrXIII:372176-372663 3.7e-11 68_[+1]_3 chrXIII:586374-586907 3.7e-11 38_[+1]_33 chrXIII:747672-748154 4.3e-11 21_[+1]_50 chrV:435444-436019 4.3e-11 63_[+1]_8 chrXI:162191-162736 4.3e-11 66_[+1]_5 chrXIII:480397-480829 5.6e-11 50_[+1]_21 chrXII:214652-215067 5.6e-11 66_[+1]_5 chrX:390823-390923 6.5e-11 3_[+1]_68 chrV:288150-288747 7.4e-11 37_[+1]_34 chrX:378202-378302 8.5e-11 68_[-1]_3 chrV:438495-438985 8.5e-11 61_[-1]_10 chrIX:300018-300498 9.7e-11 12_[+1]_59 chrII:266175-266743 9.7e-11 19_[-1]_52 chrXII:448397-448975 1.1e-10 6_[+1]_65 chrXII:167713-168248 1.4e-10 6_[+1]_65 chrXIII:258904-259451 1.4e-10 23_[+1]_48 chrXIV:632417-632915 1.6e-10 34_[-1]_37 chrX:374182-374282 1.6e-10 13_[+1]_58 chrII:405683-406226 1.6e-10 23_[-1]_48 chrVI:180686-181270 1.6e-10 38_[+1]_33 chrIV:568644-569247 1.6e-10 36_[-1]_35 chrX:355187-355287 1.6e-10 4_[-1]_67 chrXIII:131594-132113 1.6e-10 14_[+1]_57 chrIV:1016975-1017502 2.1e-10 11_[+1]_60 chrIII:168131-168547 2.1e-10 4_[+1]_67 chrVIII:134135-134613 2.1e-10 46_[-1]_25 chrX:197132-197232 2.7e-10 66_[+1]_5 chrIX:336083-336632 3.1e-10 34_[+1]_37 chrXIII:463310-463884 3.1e-10 56_[-1]_15 chrXIII:420276-420855 3.9e-10 65_[+1]_6 chrXIII:320955-321326 4.4e-10 49_[+1]_22 chrV:469237-469797 4.4e-10 41_[-1]_30 chrIV:619702-620189 5e-10 66_[+1]_5 chrVII:774127-774710 5.6e-10 31_[-1]_40 chrVII:823338-823720 5.6e-10 54_[-1]_17 chrXIII:362936-363325 9e-10 33_[-1]_38 chrIV:437550-438127 1e-09 43_[-1]_28 chrIV:520700-521420 1.4e-09 11_[-1]_60 chrIV:644921-645376 1.4e-09 47_[+1]_24 chrIV:980749-981162 1.6e-09 61_[+1]_10 chrIV:884243-884661 1.6e-09 69_[-1]_2 chrXII:426913-427494 1.8e-09 28_[-1]_43 chrVII:730953-731475 2e-09 24_[-1]_47 chrIV:83334-83826 2e-09 66_[-1]_5 chrX:422645-422745 2.2e-09 29_[-1]_42 chrXV:438429-439024 2.7e-09 40_[-1]_31 chrXVI:768982-769482 2.7e-09 17_[+1]_54 chrVI:226500-226921 2.7e-09 20_[+1]_51 chrXII:975772-976203 3e-09 38_[+1]_33 chrII:326502-327156 3.7e-09 5_[+1]_66 chrV:354695-355320 5e-09 26_[-1]_45 chrX:415705-415805 5e-09 1_[+1]_70 chrXIII:378947-379609 5e-09 67_[+1]_4 chrXV:274483-275004 7.5e-09 58_[-1]_13 chrVII:541712-542172 7.5e-09 7_[-1]_64 chrIV:488471-489151 9.1e-09 28_[+1]_43 chrXV:464281-464735 1e-08 71_[-1] chrXVI:744076-744598 2.8e-08 46_[-1]_25 chrV:492161-492565 2.8e-08 31_[+1]_40 chrXIV:725746-726581 3.6e-08 13_[+1]_58 chrIII:90850-91138 4e-08 6_[-1]_65 chrXVI:55864-56432 5.1e-08 63_[+1]_8 chrV:311726-312296 8.4e-08 54_[+1]_17 chrXIII:195928-196301 9.9e-08 61_[+1]_10 chrVIII:466812-467311 9.9e-08 28_[-1]_43 chrI:138942-139358 9.9e-08 67_[-1]_4 chrXII:92265-92906 9.9e-08 28_[-1]_43 chrXIV:546553-547684 9.9e-08 41_[-1]_30 chrVII:779381-779928 1.8e-07 61_[-1]_10 chrXIII:837745-838251 8.6e-07 46_[-1]_25 chrXV:722987-724696 8.6e-07 43_[+1]_28 chrXI:578682-579323 1.1e-06 67_[+1]_4 chrVII:115322-115727 1.1e-06 68_[+1]_3 chrXII:710611-710902 1.8e-06 2_[+1]_69 chrIII:149722-150190 3.4e-06 63_[-1]_8 chrXVI:559971-560499 3.6e-06 5_[+1]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGMYCHMDVCSGGRWTCGAACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAWYGMYCHMDVCSGGRWTCGAACC width=29 seqs=84 chrV:550952-551580 ( 62) AAAAAAATGGTCTCTAGCGGGATCGAACC 1 chrXIV:569692-570084 ( 22) AAAAGAATGGTCTCTAGCGGGATCGAACC 1 chrV:443062-443362 ( 33) AAAAATATGGTCTCTAGCGGGATCGAACC 1 chrX:531609-531709 ( 26) AAGAAACTGCGCAAGCCCGGAATCGAACC 1 chrIV:667767-668259 ( 37) ATAAAAATGGTCTCTAGCGGGATCGAACC 1 chrXVI:880085-880564 ( 15) AAAGAAATGGTCTCTAGCGGGATCGAACC 1 chrVII:828478-828981 ( 37) AAAAAAGCACTCACGATGGGGGTCGAACC 1 chrVII:845460-846021 ( 8) AAAACATTGCGCAAGCCCGGAATCGAACC 1 chrXIII:372176-372663 ( 69) AAAAAAATGATTTCGCCCAGGATCGAACT 1 chrXIII:586374-586907 ( 39) AAAAAAATGATTTCGCCCAGGATCGAACT 1 chrXIII:747672-748154 ( 22) TAAAAAACACTCACGATGGGGGTCGAACC 1 chrV:435444-436019 ( 64) AAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrXI:162191-162736 ( 67) TAAAAAACACTCACGATGGGGGTCGAACC 1 chrXIII:480397-480829 ( 51) AAAAAGAAGCCCTGTAGGGGGCTCGAACC 1 chrXII:214652-215067 ( 67) AAATAAATGGACGCAACCGGAATCGAACC 1 chrX:390823-390923 ( 4) AAAAATATGCTCCAGGGGAGGTTCGAACT 1 chrV:288150-288747 ( 38) AAAAAAACGACACCAGCAGGATTTGAACC 1 chrX:378202-378302 ( 69) AAAAAATTGATTTCGCCCAGGATCGAACT 1 chrV:438495-438985 ( 62) AAAAAATTGATTTCGCCCAGGATCGAACT 1 chrIX:300018-300498 ( 13) AAAAGATAGCCCTGTAGGGGGCTCGAACC 1 chrII:266175-266743 ( 20) AAAAAAATGCTTCCAATCGGATTTGAACC 1 chrXII:448397-448975 ( 7) AAAAAGAAGGTCCTACCCGGATTCGAACC 1 chrXII:167713-168248 ( 7) AAAATAACGACAACTGCAGGACTCGAACC 1 chrXIII:258904-259451 ( 24) AAAATAACGACAACTGCAGGACTCGAACC 1 chrXIV:632417-632915 ( 35) AAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrX:374182-374282 ( 14) AACAAAGCACTCACGATGGGGGTCGAACC 1 chrII:405683-406226 ( 24) AACAAAGCACTCACGATGGGGGTCGAACC 1 chrVI:180686-181270 ( 39) AAAGGACTGCGCAAGCCCGGAATCGAACC 1 chrIV:568644-569247 ( 37) AACAAAGCACTCACGATGGGGGTCGAACC 1 chrX:355187-355287 ( 5) AACAAAGCACTCACGATGGGGGTCGAACC 1 chrXIII:131594-132113 ( 15) AACAAAGCACTCACGATGGGGGTCGAACC 1 chrIV:1016975-1017502 ( 12) AAAGAAACTCCGAAGCGGGGAGTCGAACC 1 chrIII:168131-168547 ( 5) CAAAAAAAGGTCCTACCCGGATTCGAACC 1 chrVIII:134135-134613 ( 47) CAAAAAAAGGTCCTACCCGGATTCGAACC 1 chrX:197132-197232 ( 67) AAGAAATTGGACGAGTCCGGAATCGAACC 1 chrIX:336083-336632 ( 35) AAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXIII:463310-463884 ( 57) AAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXIII:420276-420855 ( 66) ATAAAAATGATTTCGCCCAGGATCGAACT 1 chrXIII:320955-321326 ( 50) TAAAAAATGGACGAGTCCGGAATCGAACC 1 chrV:469237-469797 ( 42) TAAAAAATGATTTCGCCCAGGATCGAACT 1 chrIV:619702-620189 ( 67) AAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrVII:774127-774710 ( 32) AAAAATTTGGACGAGTCCGGAATCGAACC 1 chrVII:823338-823720 ( 55) CAAAAAATGATTTCGCCCAGGATCGAACT 1 chrXIII:362936-363325 ( 34) AAGAAAATGCCATCTCCTAGAATCGAACC 1 chrIV:437550-438127 ( 44) AAAATGACGACAACTGCAGGACTCGAACC 1 chrIV:520700-521420 ( 12) ATAGAAAAGGTCCTACCCGGATTCGAACC 1 chrIV:644921-645376 ( 48) TTAAAAAAGGTCCTACCCGGATTCGAACC 1 chrIV:980749-981162 ( 62) GTAAAAACGACAACTGCAGGACTCGAACC 1 chrIV:884243-884661 ( 70) GAGAAAGTGCTCGAGGTGGGGTTTGAACC 1 chrXII:426913-427494 ( 29) AAAAATTCTCCGCGACGGGGAATTGAACC 1 chrVII:730953-731475 ( 25) CAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrIV:83334-83826 ( 67) TTAAACTTGCGCAAGCCCGGAATCGAACC 1 chrX:422645-422745 ( 30) GAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrXV:438429-439024 ( 41) TAAAGAACTCCTCATAGGGGGCTCGAACC 1 chrXVI:768982-769482 ( 18) TAAAGAACTCCTCATAGGGGGCTCGAACC 1 chrVI:226500-226921 ( 21) AGAGATAAGCCCTGTAGGGGGCTCGAACC 1 chrXII:975772-976203 ( 39) AAATAAACGACCCCAGTGAGGGTTGAACT 1 chrII:326502-327156 ( 6) AAGAGTTTGATCCAACCGAGGTTCGAACT 1 chrV:354695-355320 ( 27) AAAAGTACTCCGATACGGGGAGTCGAACC 1 chrX:415705-415805 ( 2) AATAAATTGAAACGGACAGGAATTGAACC 1 chrXIII:378947-379609 ( 68) AATAAATTGAAACGGACAGGAATTGAACC 1 chrXV:274483-275004 ( 59) AGAAATGCGTCACAGACAGGATTCGAACC 1 chrVII:541712-542172 ( 8) AAGAACACTCCGATACGGGGAGTCGAACC 1 chrIV:488471-489151 ( 29) AAGATTCTGATCCAACCGAGGTTCGAACT 1 chrXV:464281-464735 ( 72) AATAAAAGGGGCGAGCTGGGAATTGAACC 1 chrXVI:744076-744598 ( 47) AAAATTTTGCCACCTGTCAGAATTGAACT 1 chrV:492161-492565 ( 32) AATAATCCTTCCCCGCCAGGACTTGAACC 1 chrXIV:725746-726581 ( 14) AAAATACTGAAGGATGCGAGGTTCGAACT 1 chrIII:90850-91138 ( 7) AAAATAATGGTTGCTAAGAGATTCGAACT 1 chrXVI:55864-56432 ( 64) AATTAATTGAAACGGACAGGAATTGAACC 1 chrV:311726-312296 ( 55) ATTTCATTGGACGCAACCGGAATCGAACC 1 chrXIII:195928-196301 ( 62) AGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrVIII:466812-467311 ( 29) GGTATAATGCCACCTGCCAGAATTGAACT 1 chrI:138942-139358 ( 68) AGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrXII:92265-92906 ( 29) AGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrXIV:546553-547684 ( 42) AGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrVII:779381-779928 ( 62) GTAATCTTGAGCGGTACGAGAATCGAACC 1 chrXIII:837745-838251 ( 47) AAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrXV:722987-724696 ( 44) GATAGAATGTTGGATATGGGTTTCGAACC 1 chrXI:578682-579323 ( 68) AGGATACCGAAATGTCAGGGGTTCGAGCC 1 chrVII:115322-115727 ( 69) AGGATACCGAAATGTCAGGGGTTCGAGCC 1 chrXII:710611-710902 ( 3) AAAAAATACCAACAAGCAGGAATCACACC 1 chrIII:149722-150190 ( 64) AATTTAATAGCGCCGCTCGGTTTCGATCC 1 chrXVI:559971-560499 ( 6) ATAGAAATGCGAATTCTGTGGATCGAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGMYCHMDVCSGGRWTCGAACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 7.59951 E= 1.4e-283 136 -202 -144 -169 136 -1304 -85 -152 115 -170 -32 -152 150 -1304 -144 -236 124 -302 -85 -110 124 -244 -121 -99 81 -121 -85 -16 -136 102 -402 64 -152 -302 196 -136 -10 119 15 -236 -110 98 -121 36 -69 156 -85 -123 -10 88 -56 -44 -10 123 -21 -169 -10 -1304 111 -4 17 98 30 -310 -310 140 30 -52 -110 88 134 -468 -10 -402 184 -468 -1304 -1304 237 -1304 77 -1304 123 -368 56 -44 -12 -44 -1304 -1304 -1304 171 -1304 204 -1304 -60 -236 -1304 228 -1304 162 -402 -1304 -269 165 -1304 -302 -468 -1304 237 -1304 -1304 -468 198 -402 -52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGMYCHMDVCSGGRWTCGAACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 84 E= 1.4e-283 0.785714 0.047619 0.071429 0.095238 0.785714 0.000000 0.107143 0.107143 0.678571 0.059524 0.154762 0.107143 0.869048 0.000000 0.071429 0.059524 0.726190 0.023810 0.107143 0.142857 0.726190 0.035714 0.083333 0.154762 0.535714 0.083333 0.107143 0.273810 0.119048 0.392857 0.011905 0.476190 0.107143 0.023810 0.750000 0.119048 0.285714 0.440476 0.214286 0.059524 0.142857 0.380952 0.083333 0.392857 0.190476 0.571429 0.107143 0.130952 0.285714 0.357143 0.130952 0.226190 0.285714 0.452381 0.166667 0.095238 0.285714 0.000000 0.416667 0.297619 0.345238 0.380952 0.238095 0.035714 0.035714 0.511905 0.238095 0.214286 0.142857 0.357143 0.488095 0.011905 0.285714 0.011905 0.690476 0.011905 0.000000 0.000000 1.000000 0.000000 0.523810 0.000000 0.452381 0.023810 0.452381 0.142857 0.178571 0.226190 0.000000 0.000000 0.000000 1.000000 0.000000 0.797619 0.000000 0.202381 0.059524 0.000000 0.940476 0.000000 0.940476 0.011905 0.000000 0.047619 0.964286 0.000000 0.023810 0.011905 0.000000 1.000000 0.000000 0.000000 0.011905 0.761905 0.011905 0.214286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGMYCHMDVCSGGRWTCGAACC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAA[AT][TC]G[CAG][TC]C[CAT][CA][GTA][CAG][CGT][GC][GA]G[AG][AT]T[CT]GAAC[CT] -------------------------------------------------------------------------------- Time 360.89 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCTYWACCRACTGGGCCA MEME-2 width = 19 sites = 44 llr = 739 E-value = 1.0e-111 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCTYWACCRACTGGGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::11472:5a::131::a pos.-specific C 64914:28a2:8:22:a7: probability G 46:2::1::3:::569::: matrix T ::1656:::::2a1:::3: bits 2.4 * * 2.1 * * 1.9 * * * 1.7 * * *** ** * Relative 1.4 *** ** *** ** * Entropy 1.2 *** ** *** **** (24.2 bits) 0.9 *** ** *** **** 0.7 *** **** *** ***** 0.5 *** *************** 0.2 ******************* 0.0 ------------------- Multilevel CGCTTTACCAACTGGGCCA consensus GC CA A G CA T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCRACTGGGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrXIV:602082-602531 - 63 4.19e-11 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCATT chrXVI:880085-880564 + 70 4.19e-11 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCATT chrII:197144-197835 - 62 4.19e-11 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCTTG chrXIV:569692-570084 + 77 4.19e-11 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGA chrIX:183290-183711 + 38 4.19e-11 TTAGCACGGT GCCTTAACCAACTGGGCCA AGAGACCAGG chrXI:578682-579323 - 20 5.09e-10 AAAAGCCGAA CGCTCTACCAACTGAGCTA ACAAGGATGA chrVII:115322-115727 - 21 5.09e-10 AAAAGCCGAA CGCTCTACCAACTGAGCTA ACAAGGATGA chrXI:74407-74888 - 34 1.04e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCA TGGAGTCTAA chrIII:127498-127913 - 68 1.04e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCA TGGAGTCATT chrXV:353781-354456 + 20 1.20e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCA TAGAAGCAGT chrVI:157839-158223 + 1 2.04e-09 . CGCTCTCCCAACTGAGCTA AATCCGCTTC chrIV:1095169-1095664 + 70 2.04e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AGTCCGCTAA chrXVI:559971-560499 + 79 2.04e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AAT chrVIII:358302-358759 + 64 2.04e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AATCCGCTTA chrVIII:237748-238135 + 23 2.04e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AATCCGCTTA chrXVI:622340-622867 + 53 2.04e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AATCCGCATA chrII:36242-36606 - 31 2.04e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTA AATCCGCTTA chrXII:656823-657208 + 16 2.65e-09 GCTAAGGGAG CGCGCTACCGACTACGCCA CACGCCCAAT chrXI:219692-220122 - 45 2.65e-09 GCTAAGGGAG CGCGCTACCGACTACGCCA CACGCCCTAT chrX:414744-414844 - 41 3.79e-09 AAGAGTCATA CGCGCTACCGATTGCGCCA ACAAGGCTAA chrIII:151132-151522 + 54 3.79e-09 AAGAGTCATA CGCGCTACCGATTGCGCCA ACAAGGCTCT chrIX:300018-300498 + 67 3.79e-09 AAGAGTCATA CGCGCTACCGATTGCGCCA ACAAGGCTAT chrIV:1201476-1202004 - 67 3.79e-09 AAGAGTCATA CGCGCTACCGATTGCGCCA ACAAGGCTAT chrVI:226500-226921 + 75 3.79e-09 AAGAGTCATA CGCGCTACCGATTGCGCCA ACAAGGC chrXVI:581849-582328 - 31 3.79e-09 AAGAGTCATA CGCGCTACCGATTGCGCCA ACAAGGCTCT chrX:617700-617800 - 51 4.23e-09 TAAATCTGAC GCCTTAAACCACTCGGCCA AACTCCCATT chrXII:167713-168248 + 70 4.71e-09 TCTAATCTTT CGCCTTAACCACTCGGCCA AGTTGCCATA chrIV:1150705-1151198 + 15 4.71e-09 TAGCAGGCAT CGCCTTAACCACTCGGCCA CTGGGACTGA chrX:523841-523941 + 4 4.71e-09 TTT CGCCTTAACCACTCGGCCA AGTTGCCTTT chrIII:227766-228225 - 4 4.71e-09 TCGAGTCTCT CGCCTTAACCACTCGGCCA TAG chrX:424264-424364 + 48 1.76e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCA ACCCTCCATC chrXI:83967-84459 - 52 1.76e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCA ACCCTCCATA chrXIV:725746-726581 + 79 1.76e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCA ACC chrXI:307969-308419 + 48 9.46e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCACT chrX:378202-378302 - 24 9.46e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCTAT chrV:438495-438985 - 17 9.46e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCTAA chrVII:823338-823720 - 10 9.46e-08 TTAAGCAGAT GCCATAACCGACTAGACCA CGAAACCAC chrXV:340107-340623 + 31 1.82e-07 CGTAGCCAGA CGCCGTGACCATTGGGCCA CGAGGAACAG chrVI:167214-167685 - 45 2.06e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTA CCGAGAGTCA chrVII:422885-423376 - 19 2.06e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCA AACAACCACT chrX:542761-542861 + 60 2.06e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTA CCGAGAGTAT chrVI:210456-210912 + 48 2.06e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTA CCGAGAGTCG chrX:390823-390923 + 58 2.19e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTA CTGAAGCACT chrX:360157-360257 + 58 5.98e-07 AAAACACACA GGCTGTACCAACCGACCCA AGTGGAGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCRACTGGGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602082-602531 4.2e-11 62_[-2]_19 chrXVI:880085-880564 4.2e-11 69_[+2]_12 chrII:197144-197835 4.2e-11 61_[-2]_20 chrXIV:569692-570084 4.2e-11 76_[+2]_5 chrIX:183290-183711 4.2e-11 37_[+2]_44 chrXI:578682-579323 5.1e-10 19_[-2]_62 chrVII:115322-115727 5.1e-10 20_[-2]_61 chrXI:74407-74888 1e-09 33_[-2]_48 chrIII:127498-127913 1e-09 67_[-2]_14 chrXV:353781-354456 1.2e-09 19_[+2]_62 chrVI:157839-158223 2e-09 [+2]_81 chrIV:1095169-1095664 2e-09 69_[+2]_12 chrXVI:559971-560499 2e-09 78_[+2]_3 chrVIII:358302-358759 2e-09 63_[+2]_18 chrVIII:237748-238135 2e-09 22_[+2]_59 chrXVI:622340-622867 2e-09 52_[+2]_29 chrII:36242-36606 2e-09 30_[-2]_51 chrXII:656823-657208 2.6e-09 15_[+2]_66 chrXI:219692-220122 2.6e-09 44_[-2]_37 chrX:414744-414844 3.8e-09 40_[-2]_41 chrIII:151132-151522 3.8e-09 53_[+2]_28 chrIX:300018-300498 3.8e-09 66_[+2]_15 chrIV:1201476-1202004 3.8e-09 66_[-2]_15 chrVI:226500-226921 3.8e-09 74_[+2]_7 chrXVI:581849-582328 3.8e-09 30_[-2]_51 chrX:617700-617800 4.2e-09 50_[-2]_31 chrXII:167713-168248 4.7e-09 69_[+2]_12 chrIV:1150705-1151198 4.7e-09 14_[+2]_67 chrX:523841-523941 4.7e-09 3_[+2]_78 chrIII:227766-228225 4.7e-09 3_[-2]_78 chrX:424264-424364 1.8e-08 47_[+2]_34 chrXI:83967-84459 1.8e-08 51_[-2]_30 chrXIV:725746-726581 1.8e-08 78_[+2]_3 chrXI:307969-308419 9.5e-08 47_[+2]_34 chrX:378202-378302 9.5e-08 23_[-2]_58 chrV:438495-438985 9.5e-08 16_[-2]_65 chrVII:823338-823720 9.5e-08 9_[-2]_72 chrXV:340107-340623 1.8e-07 30_[+2]_51 chrVI:167214-167685 2.1e-07 44_[-2]_37 chrVII:422885-423376 2.1e-07 18_[-2]_63 chrX:542761-542861 2.1e-07 59_[+2]_22 chrVI:210456-210912 2.1e-07 47_[+2]_34 chrX:390823-390923 2.2e-07 57_[+2]_24 chrX:360157-360257 6e-07 57_[+2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCRACTGGGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCTYWACCRACTGGGCCA width=19 seqs=44 chrXIV:602082-602531 ( 63) GCCTTAACCAACTGGGCCA 1 chrXVI:880085-880564 ( 70) GCCTTAACCAACTGGGCCA 1 chrII:197144-197835 ( 62) GCCTTAACCAACTGGGCCA 1 chrXIV:569692-570084 ( 77) GCCTTAACCAACTGGGCCA 1 chrIX:183290-183711 ( 38) GCCTTAACCAACTGGGCCA 1 chrXI:578682-579323 ( 20) CGCTCTACCAACTGAGCTA 1 chrVII:115322-115727 ( 21) CGCTCTACCAACTGAGCTA 1 chrXI:74407-74888 ( 34) GCCTTAACCAACTTGGCCA 1 chrIII:127498-127913 ( 68) GCCTTAACCAACTTGGCCA 1 chrXV:353781-354456 ( 20) CGCCTTACCAACTTGGCCA 1 chrVI:157839-158223 ( 1) CGCTCTCCCAACTGAGCTA 1 chrIV:1095169-1095664 ( 70) CGCTCTCCCAACTGAGCTA 1 chrXVI:559971-560499 ( 79) CGCTCTCCCAACTGAGCTA 1 chrVIII:358302-358759 ( 64) CGCTCTCCCAACTGAGCTA 1 chrVIII:237748-238135 ( 23) CGCTCTCCCAACTGAGCTA 1 chrXVI:622340-622867 ( 53) CGCTCTCCCAACTGAGCTA 1 chrII:36242-36606 ( 31) CGCTCTCCCAACTGAGCTA 1 chrXII:656823-657208 ( 16) CGCGCTACCGACTACGCCA 1 chrXI:219692-220122 ( 45) CGCGCTACCGACTACGCCA 1 chrX:414744-414844 ( 41) CGCGCTACCGATTGCGCCA 1 chrIII:151132-151522 ( 54) CGCGCTACCGATTGCGCCA 1 chrIX:300018-300498 ( 67) CGCGCTACCGATTGCGCCA 1 chrIV:1201476-1202004 ( 67) CGCGCTACCGATTGCGCCA 1 chrVI:226500-226921 ( 75) CGCGCTACCGATTGCGCCA 1 chrXVI:581849-582328 ( 31) CGCGCTACCGATTGCGCCA 1 chrX:617700-617800 ( 51) GCCTTAAACCACTCGGCCA 1 chrXII:167713-168248 ( 70) CGCCTTAACCACTCGGCCA 1 chrIV:1150705-1151198 ( 15) CGCCTTAACCACTCGGCCA 1 chrX:523841-523941 ( 4) CGCCTTAACCACTCGGCCA 1 chrIII:227766-228225 ( 4) CGCCTTAACCACTCGGCCA 1 chrX:424264-424364 ( 48) GCCTTAGACCACTCGGCCA 1 chrXI:83967-84459 ( 52) GCCTTAGACCACTCGGCCA 1 chrXIV:725746-726581 ( 79) GCCTTAGACCACTCGGCCA 1 chrXI:307969-308419 ( 48) GCCATAACCGACTAGACCA 1 chrX:378202-378302 ( 24) GCCATAACCGACTAGACCA 1 chrV:438495-438985 ( 17) GCCATAACCGACTAGACCA 1 chrVII:823338-823720 ( 10) GCCATAACCGACTAGACCA 1 chrXV:340107-340623 ( 31) CGCCGTGACCATTGGGCCA 1 chrVI:167214-167685 ( 45) CCTTAAACCAACTTGGCTA 1 chrVII:422885-423376 ( 19) GCCTTAGACCGCTCGGCCA 1 chrX:542761-542861 ( 60) CCTTAAACCAACTTGGCTA 1 chrVI:210456-210912 ( 48) CCTTAAACCAACTTGGCTA 1 chrX:390823-390923 ( 58) CGCTCTTCCTACTGAGCTA 1 chrX:360157-360257 ( 58) GGCTGTACCAACCGACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCRACTGGGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 49200 bayes= 11.6599 E= 1.0e-111 -1210 167 100 -1210 -1210 116 155 -1210 -1210 227 -1210 -217 -175 -50 -9 95 -217 108 -209 64 49 -1210 -1210 89 120 -28 -77 -375 -43 200 -1210 -1210 -1210 237 -1210 -1210 64 23 50 -375 167 -1210 -309 -1210 -1210 212 -1210 -95 -1210 -309 -1210 167 -117 8 143 -117 -29 -9 155 -1210 -175 -309 220 -1210 -1210 237 -1210 -1210 -1210 186 -1210 -5 171 -1210 -1210 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCRACTGGGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 44 E= 1.0e-111 0.000000 0.613636 0.386364 0.000000 0.000000 0.431818 0.568182 0.000000 0.000000 0.931818 0.000000 0.068182 0.090909 0.136364 0.181818 0.590909 0.068182 0.409091 0.045455 0.477273 0.431818 0.000000 0.000000 0.568182 0.704545 0.159091 0.113636 0.022727 0.227273 0.772727 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.477273 0.227273 0.272727 0.022727 0.977273 0.000000 0.022727 0.000000 0.000000 0.840909 0.000000 0.159091 0.000000 0.022727 0.000000 0.977273 0.136364 0.204545 0.522727 0.136364 0.250000 0.181818 0.568182 0.000000 0.090909 0.022727 0.886364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.704545 0.000000 0.295455 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCRACTGGGCCA MEME-2 regular expression -------------------------------------------------------------------------------- [CG][GC]CT[TC][TA]A[CA]C[AGC]ACT[GC][GA]GC[CT]A -------------------------------------------------------------------------------- Time 690.76 secs. ******************************************************************************** ******************************************************************************** MOTIF SAMAASCRMAMVTSATAACCAYTACACTAH MEME-3 width = 30 sites = 30 llr = 570 E-value = 5.1e-065 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAMAASCRMAMVTSATAACCAYTACACTAH MEME-3 Description -------------------------------------------------------------------------------- Simplified A :9397:1236541:6:66::9:29361:a3 pos.-specific C 5:51265252332423:2aa:7:17193:3 probability G 312:14251213241:12::1::::2:::: matrix T 2:::::21::1:62173::::38::::7:4 bits 2.4 * 2.1 ** 1.9 ** 1.7 ** * * Relative 1.4 * * ** * * Entropy 1.2 * * * **** ** * * (27.4 bits) 0.9 * * * * ******* *** 0.7 ****** * * ******** *** 0.5 ******* ** * **************** 0.2 ****************************** 0.0 ------------------------------ Multilevel CACAACCGCAAATCATAACCACTACACTAT consensus G A GTAACCGGG CTC TA AG C A sequence T G G G C G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASCRMAMVTSATAACCAYTACACTAH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:808069-808553 + 21 3.65e-15 TTGTTCGGAT CAGAACCGAAAGTGATAACCACTACACTAT AGGACCTTTT chrII:350611-351052 - 52 7.97e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AAAACCCTTT chrIV:802566-803020 + 24 7.97e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGACA chrIII:168131-168547 + 48 7.97e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCAGGA chrVIII:134135-134613 - 3 7.97e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AG chrXII:448397-448975 + 50 7.97e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGGAA chrXI:2-179 + 7 1.10e-10 ACACAC CACACCCACACACCACACCCACTACTCTAA CCCTATTCTA chrII:405683-406226 - 62 1.10e-10 CTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrX:355187-355287 - 43 1.10e-10 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrXIII:463310-463884 - 13 1.10e-10 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGACAAA chrVII:544403-544852 + 36 1.10e-10 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrVII:1004011-1004441 - 46 7.62e-10 ACCTTTGCAT TACAAGTGCAACGCTCTACCACTAAGCTAA GGAGGCAAAC chrXVI:744076-744598 - 3 7.62e-10 ACCTTTGCAT TACAAGTGCAACGCTCTACCACTAAGCTAA GG chrVII:661529-661941 - 70 7.62e-10 T TACAAGTGCAACGCTCTACCACTAAGCTAA GGAGGCAAAT chrXI:666612-666800 - 22 1.48e-09 CCACACACCA CACACCCACACACCACACCCACACACCCAC ACCACACCCA chrIV:1075317-1075743 + 29 1.94e-09 CCTTTGCCGT GTGAAGGCAACGTGATAGCCGCTACACTAT TGGAACAATA chrIV:1016975-1017502 + 55 2.76e-09 TCTCCACGGT GAGAACGTGATGTGATAGCCGTTACACTAC ATCGGATTGT chrIV:9-238 + 44 3.86e-09 ACACCACACC CACACCCACACACCACACCCACACCCACAC ACCACACACT chrXIII:5464-5660 + 30 3.86e-09 TATATACACC CACACCCACACACCACACCCACACCCACAC ACCACACCCA chrVII:779381-779928 - 18 9.88e-09 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTAA CCGCCCGGGG chrXV:110842-111198 + 28 9.88e-09 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTAA CCGCCCGGGT chrVIII:562341-562594 - 64 1.06e-08 CCACACC CACACCCACACACCACACCCACACACACAC CCACACCCAC chrX:374182-374282 + 57 1.32e-08 ATCTTCTGAT TAGAAGTCAGACGCGTTGCCATTACGCCAC GCGAGCTACT chrXIII:747672-748154 + 65 1.32e-08 ATCTTCTGAT TAGAAGTCAGACGCGTTGCCATTACGCCAC GCGAGC chrXIII:290488-291121 - 53 1.32e-08 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAT chrXIII:131594-132113 + 58 1.32e-08 ATCTTCTGAT TAGAAGTCAGACGCGTTGCCATTACGCCAC GCGAGCTAAA chrXII:1012153-1012829 + 31 1.88e-08 CACCACAAGA CACCACAGCAGCACAGAACCACAACACCAA TGTCCGAAGC chrVIII:62608-62911 - 52 8.25e-08 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCATAT chrXIV:783695-784323 - 65 8.25e-08 CACACA CACCACACCCACACACTACCCTAACACTAC CCTAACACTA chrVII:545119-546019 - 48 1.27e-07 TAATCGATAT CAGAACTACCAATTATTCCTACTACAAGAA GTATGTGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASCRMAMVTSATAACCAYTACACTAH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:808069-808553 3.6e-15 20_[+3]_50 chrII:350611-351052 8e-15 51_[-3]_19 chrIV:802566-803020 8e-15 23_[+3]_47 chrIII:168131-168547 8e-15 47_[+3]_23 chrVIII:134135-134613 8e-15 2_[-3]_68 chrXII:448397-448975 8e-15 49_[+3]_21 chrXI:2-179 1.1e-10 6_[+3]_64 chrII:405683-406226 1.1e-10 61_[-3]_9 chrX:355187-355287 1.1e-10 42_[-3]_28 chrXIII:463310-463884 1.1e-10 12_[-3]_58 chrVII:544403-544852 1.1e-10 35_[+3]_35 chrVII:1004011-1004441 7.6e-10 45_[-3]_25 chrXVI:744076-744598 7.6e-10 2_[-3]_68 chrVII:661529-661941 7.6e-10 69_[-3]_1 chrXI:666612-666800 1.5e-09 21_[-3]_49 chrIV:1075317-1075743 1.9e-09 28_[+3]_42 chrIV:1016975-1017502 2.8e-09 54_[+3]_16 chrIV:9-238 3.9e-09 43_[+3]_27 chrXIII:5464-5660 3.9e-09 29_[+3]_41 chrVII:779381-779928 9.9e-09 17_[-3]_53 chrXV:110842-111198 9.9e-09 27_[+3]_43 chrVIII:562341-562594 1.1e-08 63_[-3]_7 chrX:374182-374282 1.3e-08 56_[+3]_14 chrXIII:747672-748154 1.3e-08 64_[+3]_6 chrXIII:290488-291121 1.3e-08 52_[-3]_18 chrXIII:131594-132113 1.3e-08 57_[+3]_13 chrXII:1012153-1012829 1.9e-08 30_[+3]_40 chrVIII:62608-62911 8.2e-08 51_[-3]_19 chrXIV:783695-784323 8.2e-08 64_[-3]_6 chrVII:545119-546019 1.3e-07 47_[-3]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASCRMAMVTSATAACCAYTACACTAH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAMAASCRMAMVTSATAACCAYTACACTAH width=30 seqs=30 chrXIII:808069-808553 ( 21) CAGAACCGAAAGTGATAACCACTACACTAT 1 chrII:350611-351052 ( 52) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrIV:802566-803020 ( 24) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrIII:168131-168547 ( 48) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrVIII:134135-134613 ( 3) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrXII:448397-448975 ( 50) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrXI:2-179 ( 7) CACACCCACACACCACACCCACTACTCTAA 1 chrII:405683-406226 ( 62) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrX:355187-355287 ( 43) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrXIII:463310-463884 ( 13) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrVII:544403-544852 ( 36) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrVII:1004011-1004441 ( 46) TACAAGTGCAACGCTCTACCACTAAGCTAA 1 chrXVI:744076-744598 ( 3) TACAAGTGCAACGCTCTACCACTAAGCTAA 1 chrVII:661529-661941 ( 70) TACAAGTGCAACGCTCTACCACTAAGCTAA 1 chrXI:666612-666800 ( 22) CACACCCACACACCACACCCACACACCCAC 1 chrIV:1075317-1075743 ( 29) GTGAAGGCAACGTGATAGCCGCTACACTAT 1 chrIV:1016975-1017502 ( 55) GAGAACGTGATGTGATAGCCGTTACACTAC 1 chrIV:9-238 ( 44) CACACCCACACACCACACCCACACCCACAC 1 chrXIII:5464-5660 ( 30) CACACCCACACACCACACCCACACCCACAC 1 chrVII:779381-779928 ( 18) GGAAGGGTGGGATGATAACCACTACACTAA 1 chrXV:110842-111198 ( 28) GGAAGGGTGGGATGATAACCACTACACTAA 1 chrVIII:562341-562594 ( 64) CACACCCACACACCACACCCACACACACAC 1 chrX:374182-374282 ( 57) TAGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrXIII:747672-748154 ( 65) TAGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrXIII:290488-291121 ( 53) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXIII:131594-132113 ( 58) TAGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrXII:1012153-1012829 ( 31) CACCACAGCAGCACAGAACCACAACACCAA 1 chrVIII:62608-62911 ( 52) CACAACGATGTGTACTAACCACTATACTAA 1 chrXIV:783695-784323 ( 65) CACCACACCCACACACTACCCTAACACTAC 1 chrVII:545119-546019 ( 48) CAGAACTACCAATTATTCCTACTACAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASCRMAMVTSATAACCAYTACACTAH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.3956 E= 5.1e-065 -1155 137 63 -62 155 -1155 -154 -320 -20 137 27 -1155 161 -154 -1155 -1155 126 -21 -95 -1155 -1155 155 116 -1155 -220 137 5 -39 -39 -21 127 -120 12 137 -54 -320 97 5 5 -1155 61 79 -95 -162 38 46 79 -1155 -220 -21 5 89 -320 116 92 -88 105 -21 -95 -162 -1155 63 -253 112 97 -1155 -54 -20 97 5 5 -1155 -1155 237 -1155 -1155 -1155 232 -1155 -320 150 -253 -95 -1155 -1155 179 -1155 12 -62 -1155 -1155 138 150 -54 -1155 -1155 -3 179 -1155 -320 105 -54 5 -320 -120 216 -1155 -1155 -1155 46 -253 119 171 -1155 -1155 -1155 -3 63 -1155 38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASCRMAMVTSATAACCAYTACACTAH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 30 E= 5.1e-065 0.000000 0.500000 0.300000 0.200000 0.900000 0.000000 0.066667 0.033333 0.266667 0.500000 0.233333 0.000000 0.933333 0.066667 0.000000 0.000000 0.733333 0.166667 0.100000 0.000000 0.000000 0.566667 0.433333 0.000000 0.066667 0.500000 0.200000 0.233333 0.233333 0.166667 0.466667 0.133333 0.333333 0.500000 0.133333 0.033333 0.600000 0.200000 0.200000 0.000000 0.466667 0.333333 0.100000 0.100000 0.400000 0.266667 0.333333 0.000000 0.066667 0.166667 0.200000 0.566667 0.033333 0.433333 0.366667 0.166667 0.633333 0.166667 0.100000 0.100000 0.000000 0.300000 0.033333 0.666667 0.600000 0.000000 0.133333 0.266667 0.600000 0.200000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.966667 0.000000 0.033333 0.866667 0.033333 0.100000 0.000000 0.000000 0.666667 0.000000 0.333333 0.200000 0.000000 0.000000 0.800000 0.866667 0.133333 0.000000 0.000000 0.300000 0.666667 0.000000 0.033333 0.633333 0.133333 0.200000 0.033333 0.133333 0.866667 0.000000 0.000000 0.000000 0.266667 0.033333 0.700000 1.000000 0.000000 0.000000 0.000000 0.300000 0.300000 0.000000 0.400000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMAASCRMAMVTSATAACCAYTACACTAH MEME-3 regular expression -------------------------------------------------------------------------------- [CGT]A[CAG]AA[CG][CTG][GA][CA][ACG][AC][AGC][TG][CG]A[TC][AT][ACG]CCA[CT][TA]A[CA][AG]C[TC]A[TAC] -------------------------------------------------------------------------------- Time 1008.76 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:332181-333974 7.78e-01 100 chrVIII:145893-146475 5.14e-01 100 chrXIV:783695-784323 1.12e-04 64_[-3(8.25e-08)]_6 chrVII:115322-115727 1.65e-10 20_[-2(5.09e-10)]_29_[+1(1.11e-06)]_\ 3 chrXI:158225-159581 6.71e-01 100 chrI:166170-166602 4.68e-01 100 chrIV:1354324-1356016 9.68e-01 100 chrXVI:821617-822224 3.62e-01 100 chrXIII:557437-558296 9.17e-01 100 chrVII:479164-482845 8.70e-02 100 chrVII:364090-364416 9.03e-01 100 chrXI:260634-260836 2.52e-01 100 chrIV:600809-601947 5.26e-02 100 chrIII:149391-149570 4.49e-01 100 chrXVI:378667-378984 1.63e-01 100 chrIV:1012752-1013964 3.12e-01 100 chrXI:381664-382466 1.57e-01 100 chrIX:332920-333232 6.11e-01 100 chrXIV:546553-547684 2.04e-05 41_[-1(9.86e-08)]_30 chrIV:913961-914861 5.68e-02 100 chrXII:348094-348721 8.62e-01 100 chrIX:325737-326147 3.42e-01 100 chrII:266175-266743 1.63e-06 19_[-1(9.68e-11)]_52 chrXI:322432-322996 6.62e-01 100 chrXVI:55864-56432 2.37e-04 63_[+1(5.11e-08)]_8 chrVII:401368-401619 9.70e-01 100 chrXV:638926-639492 9.45e-01 100 chrXI:666612-666800 1.80e-07 8_[-3(1.67e-05)]_23_[-3(1.83e-05)]_\ 9 chrVII:823338-823720 3.16e-10 9_[-2(9.46e-08)]_26_[-1(5.63e-10)]_\ 17 chrXV:722987-724696 3.59e-03 43_[+1(8.61e-07)]_28 chrXIII:9856-10279 6.90e-01 100 chrV:135202-136065 7.39e-01 100 chrXVI:581849-582328 1.35e-06 30_[-2(3.79e-09)]_51 chrII:594950-595411 2.50e-01 100 chrIV:720635-722157 4.08e-01 100 chrXV:520453-520942 8.13e-01 100 chrIV:884243-884661 1.96e-06 69_[-1(1.57e-09)]_2 chrXIII:756349-756796 9.48e-01 100 chrVI:226500-226921 3.56e-11 20_[+1(2.70e-09)]_25_[+2(3.79e-09)]_\ 7 chrXII:713135-713619 4.93e-01 100 chrVIII:174484-175954 2.19e-01 100 chrX:531609-531709 3.04e-08 25_[-1(5.16e-12)]_46 chrVII:323407-325045 8.81e-01 100 chrVIII:388680-389005 8.43e-01 100 chrXII:818498-820411 5.85e-02 40_[+1(9.70e-05)]_31 chrXIII:225268-226609 9.66e-01 100 chrXIV:229683-230822 4.88e-01 100 chrXIV:725746-726581 2.05e-09 13_[+1(3.62e-08)]_36_[+2(1.76e-08)]_\ 3 chrVII:405461-405821 3.02e-01 100 chrXVI:768982-769482 2.00e-05 17_[+1(2.70e-09)]_54 chrXII:1017705-1019412 4.49e-01 100 chrIX:129050-130227 5.49e-01 100 chrXV:464281-464735 3.21e-05 7_[-1(9.86e-08)]_35_[-1(1.01e-08)] chrXIII:220059-220896 1.02e-01 100 chrVII:878532-879328 5.77e-01 100 chrXI:490526-491201 7.85e-02 100 chrX:390823-390923 3.16e-11 3_[+1(6.45e-11)]_25_[+2(2.19e-07)]_\ 24 chrVI:210456-210912 3.89e-05 47_[+2(2.06e-07)]_34 chrXVI:279997-280242 2.38e-01 100 chrVI:131314-131582 9.00e-01 100 chrXI:259147-260006 1.99e-01 100 chrXII:795667-797481 7.13e-01 100 chrXI:617686-619292 9.74e-01 100 chrXI:7810-8246 5.00e-01 100 chrV:241971-242299 8.78e-01 100 chrII:59817-61281 4.72e-01 100 chrVII:254129-254738 8.43e-01 100 chrXIII:352071-353211 3.22e-01 100 chrXIV:88939-89700 9.84e-01 100 chrIII:78388-78896 6.65e-01 100 chrXII:459622-460684 4.94e-01 100 chrVIII:16582-18311 4.90e-01 100 chrXI:99762-100028 4.78e-01 100 chrIII:127498-127913 6.58e-06 67_[-2(1.04e-09)]_14 chrXII:950056-950306 1.04e-01 40_[-3(7.76e-05)]_30 chrII:36242-36606 8.86e-06 30_[-2(2.04e-09)]_51 chrV:305814-307443 2.04e-01 100 chrXII:374196-374720 9.41e-01 100 chrIV:1236421-1238419 9.49e-01 100 chrXII:92265-92906 2.04e-05 28_[-1(9.86e-08)]_43 chrVII:287146-287676 9.23e-02 100 chrXVI:519943-520528 6.77e-01 100 chrVI:101142-102079 2.93e-01 100 chrXIV:715968-716621 9.22e-01 100 chrVII:794167-794584 5.59e-01 100 chrXII:369637-370298 7.86e-01 100 chrII:44957-45352 1.69e-01 100 chrXII:897668-899666 7.67e-01 100 chrXV:925203-925412 8.56e-01 100 chrVIII:115575-116406 7.50e-01 100 chrVII:110227-110788 7.81e-01 100 chrXI:21302-21827 1.67e-01 100 chrXV:1025775-1026043 4.22e-01 100 chrII:326502-327156 9.13e-08 5_[+1(3.70e-09)]_26_[+2(5.80e-05)]_\ 21 chrXV:159276-160120 8.65e-02 100 chrVII:726397-728626 4.31e-01 100 chrXVI:214620-215145 2.32e-01 100 chrXII:522153-523280 8.34e-01 100 chrXVI:810572-811177 8.56e-01 100 chrVIII:411019-411636 9.43e-01 100 chrV:491011-491975 7.71e-01 100 chrXI:666008-666179 3.45e-01 100 chrXVI:622340-622867 1.60e-05 52_[+2(2.04e-09)]_29 chrXII:1012153-1012829 6.67e-05 30_[+3(1.88e-08)]_40 chrXII:282594-284006 3.77e-01 100 chrIII:49424-50226 6.11e-01 100 chrIV:411050-411665 7.90e-01 100 chrXVI:941439-942854 4.62e-01 100 chrXII:1028196-1028600 8.22e-01 100 chrXV:80319-81174 8.32e-01 100 chrXIII:91389-92098 3.68e-01 100 chrIX:197292-198124 8.32e-01 100 chrV:492161-492565 3.31e-04 31_[+1(2.78e-08)]_40 chrVI:222858-225175 3.47e-01 100 chrV:77496-79490 4.25e-01 100 chrIV:644921-645376 3.08e-06 47_[+1(1.41e-09)]_24 chrXV:438429-439024 3.93e-06 40_[-1(2.70e-09)]_31 chrXII:932086-932502 9.35e-01 100 chrIX:183290-183711 4.89e-08 37_[+2(4.19e-11)]_44 chrXV:348325-349431 9.40e-01 100 chrVII:738881-739643 6.23e-01 100 chrXIII:572653-573453 9.68e-01 100 chrVIII:237748-238135 1.22e-05 22_[+2(2.04e-09)]_59 chrXVI:927677-928095 4.81e-02 80_[-2(8.02e-05)]_1 chrV:377723-379026 1.28e-01 100 chrVII:561408-561733 8.15e-01 100 chrXV:988347-989586 9.83e-01 100 chrXIII:761564-763124 9.91e-01 100 chrXV:795832-798665 6.23e-01 100 chrX:540695-540795 7.24e-01 100 chrVII:661529-661941 3.46e-06 69_[-3(7.62e-10)]_1 chrX:422645-422745 1.46e-05 29_[-1(2.18e-09)]_42 chrXII:636705-639940 9.80e-01 100 chrXII:232006-234251 9.43e-01 100 chrII:9459-9987 8.61e-01 100 chrXIII:650766-652935 7.25e-01 100 chrXIV:499303-502730 8.55e-02 68_[-1(4.75e-05)]_3 chrI:138942-139358 7.02e-06 67_[-1(9.86e-08)]_4 chrVII:592111-592942 2.73e-02 37_[-2(7.61e-05)]_44 chrXI:379684-380046 7.40e-01 100 chrXI:261091-262124 4.93e-01 100 chrV:266194-268247 6.77e-01 100 chrXI:512457-512669 3.33e-01 100 chrXV:594302-594696 5.41e-01 100 chrIV:1243146-1243302 3.28e-01 100 chrXIII:586374-586907 5.80e-07 38_[+1(3.69e-11)]_33 chrVII:544403-544852 3.07e-08 35_[+3(1.10e-10)]_35 chrX:605839-605939 7.88e-01 100 chrXI:83967-84459 8.03e-05 51_[-2(1.76e-08)]_30 chrVIII:74906-75930 2.26e-01 100 chrXIV:6617-6985 2.76e-03 21_[+3(1.78e-05)]_49 chrVII:1050221-1050526 7.60e-02 100 chrXIII:463310-463884 7.14e-15 12_[-3(1.10e-10)]_14_[-1(3.07e-10)]_\ 15 chrIII:314975-316045 6.59e-01 100 chrVIII:358302-358759 2.26e-06 63_[+2(2.04e-09)]_18 chrV:270392-270685 5.87e-01 100 chrVII:624773-625856 1.71e-01 100 chrX:115792-115892 8.76e-01 100 chrIV:359137-359808 1.48e-01 100 chrXII:448397-448975 2.54e-19 6_[+1(1.11e-10)]_14_[+3(7.97e-15)]_\ 21 chrIV:619702-620189 6.00e-07 66_[+1(5.00e-10)]_5 chrXIII:296711-298848 3.40e-01 100 chrVI:106509-107033 6.33e-01 100 chrI:190115-190745 4.83e-01 100 chrIV:667767-668259 1.51e-07 36_[+1(7.10e-12)]_35 chrIV:216568-218053 1.67e-01 100 chrXII:975772-976203 1.14e-05 38_[+1(3.01e-09)]_33 chrI:33969-34502 6.35e-01 100 chrIV:1201476-1202004 8.21e-06 66_[-2(3.79e-09)]_15 chrXV:109578-110674 4.85e-01 100 chrX:233730-233830 9.53e-01 100 chrIV:490955-491290 5.49e-01 100 chrXI:313224-313997 9.66e-01 100 chrXIV:173757-174677 1.04e-01 100 chrVIII:134135-134613 4.73e-19 2_[-3(7.97e-15)]_14_[-1(2.11e-10)]_\ 25 chrXIV:576711-577509 9.95e-01 100 chrIV:1449825-1451406 8.64e-01 100 chrXIV:525067-525282 4.80e-02 64_[+3(4.03e-05)]_6 chrX:396582-396682 3.42e-03 22_[+2(3.11e-05)]_59 chrIX:255067-257149 1.78e-02 100 chrXII:921712-923130 7.11e-02 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1.05e-11 13_[+1(1.64e-10)]_14_[+3(1.32e-08)]_\ 14 chrV:311726-312296 4.38e-04 54_[+1(8.39e-08)]_17 chrVII:483317-483691 1.31e-02 7_[-3(7.56e-05)]_63 chrXIII:731760-733403 9.40e-01 100 chrVII:779381-779928 1.89e-10 17_[-3(9.88e-09)]_14_[-1(1.84e-07)]_\ 10 chrXV:444610-446390 6.64e-01 100 chrXVI:280597-281914 2.72e-01 100 chrVII:786598-788751 6.05e-01 100 chrXIII:480397-480829 2.52e-07 50_[+1(5.62e-11)]_21 chrIX:141815-142466 1.36e-01 100 chrIII:268783-269016 2.41e-01 100 chrXII:167713-168248 5.47e-12 6_[+1(1.44e-10)]_34_[+2(4.71e-09)]_\ 12 chrXII:627943-628637 6.66e-01 100 chrXVI:645305-646165 7.03e-01 100 chrII:466328-466891 1.65e-02 69_[-1(4.75e-05)]_2 chrII:89670-90405 1.64e-01 100 chrV:423083-424348 4.94e-02 100 chrIV:1016975-1017502 1.77e-12 11_[+1(2.11e-10)]_14_[+3(2.76e-09)]_\ 16 chrXIV:632417-632915 6.29e-07 34_[-1(1.64e-10)]_37 chrXV:673221-674091 4.93e-01 100 chrX:348876-348976 4.44e-01 100 chrXI:518818-521089 5.78e-02 100 chrIV:1095169-1095664 1.14e-06 69_[+2(2.04e-09)]_12 chrXII:83867-84345 6.85e-01 100 chrIV:836480-837098 2.88e-01 100 chrV:288150-288747 6.70e-07 37_[+1(7.40e-11)]_34 chrXII:837676-839400 8.74e-01 100 chrXV:670899-671951 6.59e-01 100 chrIV:340355-341670 3.05e-01 100 chrV:207349-207672 1.96e-01 100 chrVIII:555785-556923 2.68e-02 33_[+2(5.65e-05)]_48 chrIX:386282-387447 1.18e-01 100 chrXV:779695-780998 9.24e-01 100 chrXIV:426707-427168 4.89e-01 100 chrXV:160335-160713 9.34e-01 100 chrXIII:372176-372663 9.62e-07 68_[+1(3.69e-11)]_3 chrIV:980749-981162 1.19e-05 61_[+1(1.57e-09)]_10 chrVII:291716-291937 5.35e-01 100 chrV:354695-355320 3.41e-06 26_[-1(5.04e-09)]_45 chrXIII:407814-408810 3.03e-01 100 chrV:424625-425218 7.04e-01 100 chrIX:210657-211013 4.44e-01 100 chrX:223711-223811 8.28e-01 100 chrVII:706904-707188 1.00e+00 100 chrXIII:498740-500729 7.84e-01 100 chrXVI:432541-434384 8.73e-01 100 chrV:143893-144100 8.60e-01 100 chrVI:157839-158223 1.92e-05 [+2(2.04e-09)]_81 chrIX:315769-318617 6.20e-01 100 chrVII:531275-532253 9.99e-01 100 chrXV:514224-514708 7.69e-02 100 chrXIV:738829-740160 6.26e-01 100 chrV:225507-225717 6.03e-01 100 chrXV:234214-234824 1.25e-01 100 chrIV:1461468-1461852 2.09e-01 100 chrIV:1362096-1362603 1.80e-01 100 chrV:174432-175150 2.56e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************