Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Database contains 774 sequences, 908494 residues

MOTIFS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
GGWTCGA 7 GGTTCGA
ARAAAAA 7 AAAAAAA
CCTTAVC 7 CCTTAAC
GGYTATCA 8 GGTTATCA
CMAGAAG 7 CAAGAAG
GMTACCGA 8 GCTACCGA
ACCKTS 6 ACCTTG
RGTGGTA 7 AGTGGTA
CAGCAG 6 CAGCAG

Random model letter frequencies (/srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/background):
A 0.308 C 0.192 G 0.192 T 0.308

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CMAGAAG DREME-5 chrXIII - 19562 19568 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV + 24257 24263 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV - 25881 25887 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIII - 30334 30340 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 44205 44211 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI + 44842 44848 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI + 45796 45802 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVI - 53609 53615 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVI - 54089 54095 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 56877 56883 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 58365 58371 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIII - 58626 58632 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIII + 58837 58843 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIII + 59128 59134 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV + 62267 62273 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVI + 63937 63943 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV - 65487 65493 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrX + 69882 69888 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrI + 72604 72610 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrX - 74949 74955 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrII - 81890 81896 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV + 86020 86026 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 88183 88189 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV + 92335 92341 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 94045 94051 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI - 100727 100733 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVI - 101959 101965 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI + 109251 109257 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV + 110443 110449 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI + 111381 111387 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrX - 121400 121406 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIX - 128745 128751 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIX - 129324 129330 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 130020 130026 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIII + 138045 138051 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI - 141927 141933 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIII - 142185 142191 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVIII + 144802 144808 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVIII + 145490 145496 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 145996 146002 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII + 147048 147054 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrX + 157646 157652 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI - 163688 163694 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 171024 171030 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV + 172972 172978 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 185889 185895 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIX - 211052 211058 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVI - 220546 220552 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVI - 220943 220949 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 221047 221053 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII + 223040 223046 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII + 226541 226547 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 228286 228292 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIII + 228333 228339 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 228336 228342 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 230420 230426 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 233267 233273 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrX + 233976 233982 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV - 235804 235810 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV + 236112 236118 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV - 236233 236239 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrII + 236667 236673 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 242797 242803 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 243208 243214 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 254190 254196 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 259281 259287 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI - 261450 261456 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 262557 262563 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 263915 263921 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 277625 277631 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV + 282072 282078 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrX - 292713 292719 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrX - 292941 292947 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 300160 300166 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV + 301586 301592 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI + 303436 303442 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV + 306151 306157 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 306535 306541 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 309184 309190 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 311723 311729 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 312216 312222 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIX + 317488 317494 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIX - 317552 317558 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIX + 317885 317891 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIX + 326121 326127 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI - 326529 326535 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 332229 332235 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrII - 333865 333871 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI - 334602 334608 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII + 334684 334690 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII + 334982 334988 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 340326 340332 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV - 352499 352505 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 356212 356218 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 356584 356590 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVIII + 358631 358637 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 363653 363659 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI + 364632 364638 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 374392 374398 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrII + 375658 375664 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVIII - 383277 383283 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrII + 395446 395452 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV - 396138 396144 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrII - 396728 396734 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV - 397034 397040 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV - 397965 397971 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrII - 398161 398167 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 398634 398640 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVIII + 401512 401518 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI - 405997 406003 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV + 407155 407161 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrX + 415236 415242 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV - 423225 423231 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 437487 437493 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 437636 437642 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 440626 440632 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 440725 440731 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 440964 440970 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 445582 445588 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 446638 446644 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 447097 447103 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 454197 454203 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 454516 454522 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV + 464371 464377 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 466762 466768 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 479970 479976 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 481189 481195 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 481267 481273 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 482434 482440 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVIII - 487926 487932 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVIII - 488073 488079 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 490788 490794 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI + 491005 491011 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrV - 492379 492385 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 492790 492796 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV + 499716 499722 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 507713 507719 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 508160 508166 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 508919 508925 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 516748 516754 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI - 520592 520598 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI - 530620 530626 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI + 530829 530835 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 550402 550408 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 555934 555940 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 556257 556263 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 557153 557159 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrII + 558368 558374 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 569027 569033 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV - 575661 575667 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 577846 577852 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 580248 580254 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV + 586685 586691 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 611418 611424 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrII - 613509 613515 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 619996 620002 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 620245 620251 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 622578 622584 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 622951 622957 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXI - 630827 630833 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 636823 636829 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 637688 637694 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 637766 637772 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 638145 638151 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 639183 639189 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 639366 639372 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 641390 641396 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI - 643123 643129 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrX + 651987 651993 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 652866 652872 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV + 655002 655008 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI + 655007 655013 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV - 655175 655181 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV - 657179 657185 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIV - 661070 661076 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 661821 661827 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 667619 667625 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 667786 667792 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 672410 672416 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 672779 672785 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 674291 674297 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 678254 678260 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII + 701871 701877 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII + 702317 702323 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 708529 708535 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 720865 720871 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 722350 722356 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 723259 723265 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 724675 724681 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 729178 729184 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI - 744143 744149 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII + 753576 753582 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 760614 760620 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 781329 781335 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 787481 787487 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI + 794928 794934 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 796534 796540 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII - 798783 798789 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 799031 799037 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 806231 806237 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 809542 809548 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 811040 811046 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 811193 811199 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXVI + 824029 824035 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 838288 838294 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrVII + 845895 845901 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 867893 867899 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 876106 876112 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 887723 887729 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXIII - 888521 888527 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 897672 897678 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV + 898131 898137 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV + 900601 900607 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 923754 923760 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 929582 929588 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII + 947669 947675 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 1015437 1015443 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV - 1016493 1016499 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV + 1016522 1016528 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXV + 1016693 1016699 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrXII - 1018334 1018340 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 1237717 1237723 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 1256768 1256774 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 1329403 1329409 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 1354977 1354983 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 1360737 1360743 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV - 1450246 1450252 3.96e-05 0.314 CCAGAAG
CMAGAAG DREME-5 chrIV + 1490133 1490139 3.96e-05 0.314 CCAGAAG
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/background --motif CMAGAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/RM11-1A--MCM1.fa

Settings: 


  

    output_directory = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/fimo_out_7
    MEME file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/dreme_out/dreme.xml
    sequence file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
  
  

    background file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--MCM1/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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