Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.019126
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.057957
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.075732
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.01214
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background
Finished invoke:
  name: bg  status: 0  time: 0.014148
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 919.627064
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 18.977161
Invoking:
  centrimo -seqlen 656 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 256  time: 0.024889
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.143969
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background -primary MBSGGRATCGAACCSVBGAYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.432313
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background -primary SSCTYWWMCMACTRVGCYAHV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.473291
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background -primary GGCGCTTGTCGCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.242248
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background -primary AARAARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.295276
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background -primary GCTRCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.201634
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background --motif MBSGGRATCGAACCSVBGAYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.375491
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background --motif SSCTYWWMCMACTRVGCYAHV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.373638
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background --motif GGCGCTTGTCGCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.347295
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background --motif AARAARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.248845
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background --motif GCTRCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/RM11-1A--INO80.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.261741
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.140832
Done