******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71753-73279 1.0000 100 chrI:81931-82318 1.0000 100 chrI:138945-139375 1.0000 100 chrI:142153-143691 1.0000 100 chrI:166173-166566 1.0000 100 chrI:181125-181606 1.0000 100 chrI:182280-183129 1.0000 100 chrII:9461-10004 1.0000 100 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chrXV:438479-438970 1.0000 100 chrXV:444624-446167 1.0000 100 chrXV:464282-464928 1.0000 100 chrXV:487439-487738 1.0000 100 chrXV:504824-505486 1.0000 100 chrXV:505692-506744 1.0000 100 chrXV:571600-572157 1.0000 100 chrXV:594307-594659 1.0000 100 chrXV:639186-639555 1.0000 100 chrXV:663499-664536 1.0000 100 chrXV:678142-679133 1.0000 100 chrXV:710124-710515 1.0000 100 chrXV:722881-724745 1.0000 100 chrXV:758939-759535 1.0000 100 chrXV:779716-781493 1.0000 100 chrXV:853651-854827 1.0000 100 chrXV:866375-867320 1.0000 100 chrXV:900231-901238 1.0000 100 chrXV:956236-956547 1.0000 100 chrXV:968168-968926 1.0000 100 chrXV:976376-976714 1.0000 100 chrXV:978822-979135 1.0000 100 chrXV:979717-981012 1.0000 100 chrXV:1003958-1004977 1.0000 100 chrXV:1027798-1029083 1.0000 100 chrXV:1059423-1061058 1.0000 100 chrXVI:55857-56423 1.0000 100 chrXVI:75490-77051 1.0000 100 chrXVI:172896-173976 1.0000 100 chrXVI:188606-189311 1.0000 100 chrXVI:209044-210628 1.0000 100 chrXVI:280589-282964 1.0000 100 chrXVI:302335-304409 1.0000 100 chrXVI:338461-339298 1.0000 100 chrXVI:378653-378980 1.0000 100 chrXVI:404480-406013 1.0000 100 chrXVI:406215-408015 1.0000 100 chrXVI:432472-434363 1.0000 100 chrXVI:435502-436206 1.0000 100 chrXVI:519987-520539 1.0000 100 chrXVI:560005-560496 1.0000 100 chrXVI:572176-572579 1.0000 100 chrXVI:581846-582786 1.0000 100 chrXVI:622302-622898 1.0000 100 chrXVI:654051-654826 1.0000 100 chrXVI:689220-689873 1.0000 100 chrXVI:692829-695014 1.0000 100 chrXVI:699634-700673 1.0000 100 chrXVI:701860-702391 1.0000 100 chrXVI:718356-719409 1.0000 100 chrXVI:731555-732320 1.0000 100 chrXVI:744052-744599 1.0000 100 chrXVI:768909-769479 1.0000 100 chrXVI:775637-776099 1.0000 100 chrXVI:794038-796173 1.0000 100 chrXVI:810580-810873 1.0000 100 chrXVI:819332-820089 1.0000 100 chrXVI:856739-857154 1.0000 100 chrXVI:860110-860678 1.0000 100 chrXVI:879518-880554 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 577 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57700 N= 577 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--INO80/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF MBSGGRATCGAACCSVBGAYC MEME-1 width = 21 sites = 70 llr = 1175 E-value = 1.5e-206 ******************************************************************************** -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:12:65:::aa:::3:36:1 pos.-specific C 444:::2:7:::a8542:166 probability G 2458a42::a::::3347111 matrix T :2::::1a3::::21:3:232 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * * **** * Entropy 1.2 ** ******* * (24.2 bits) 1.0 **** ******* * * 0.7 ***** ******** * ** 0.5 ****** *********** ** 0.2 ********************* 0.0 --------------------- Multilevel CCGGGAATCGAACCCCGGACC consensus AGC GG T GGTATT sequence GT AC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXVI:860110-860678 - 77 7.19e-11 AAG CCCGGAATCGAACCGGGGGCC CAACGATGGC chrXV:226433-226893 + 6 7.19e-11 GCAAG CCCGGAATCGAACCGGGGGCC CAACGATGGC chrVII:845401-846076 - 3 7.19e-11 ATTGCGCAAG CCCGGAATCGAACCGGGGGCC CA chrVI:180699-181262 + 52 7.19e-11 ACTGCGCAAG CCCGGAATCGAACCGGGGGCC CAACGATGGC chrXI:140685-141366 + 51 1.03e-10 AACTCCGATA CGGGGAGTCGAACCCCGGTCT CCACGGTGAA chrVII:541705-542165 - 8 1.03e-10 CACTCCGATA CGGGGAGTCGAACCCCGGTCT CCACGGT chrV:354671-355364 - 10 1.03e-10 TACTCCGATA CGGGGAGTCGAACCCCGGTCT CCACGGTGA chrIV:1016947-1017518 + 33 1.03e-10 AACTCCGAAG CGGGGAGTCGAACCCCGGTCT CCACGGTGAG chrII:644931-645451 - 69 1.03e-10 AACTCCGATA CGGGGAGTCGAACCCCGGTCT CCACGGTGAA chrXIII:480410-480831 + 59 1.71e-10 GAAGCCCTGT AGGGGGCTCGAACCCCTAACC TTATGATTAA chrX:414743-415335 - 21 1.71e-10 TTAGCCCTGT AGGGGGCTCGAACCCCTAACC TTATGATTAA chrIX:299973-300473 + 63 1.71e-10 ATAGCCCTGT AGGGGGCTCGAACCCCTAACC TTATGATTAA chrIII:151146-151509 + 15 1.71e-10 AAAGCCCTGT AGGGGGCTCGAACCCCTAACC TTATGATTAA chrXV:853651-854827 + 6 2.02e-10 ACGCA ACCGGAATCGAACCGATGACC TCTTCCTTGC chrXIV:569768-570076 + 3 2.02e-10 CT AGCGGGATCGAACCGCTGATC CCCGCGTTAT chrXII:1051919-1052217 + 61 2.02e-10 AATGGTCTCT AGCGGGATCGAACCGCTGATC CCCGCGTTAT chrXII:214685-215063 + 67 2.02e-10 AATGGACGCA ACCGGAATCGAACCGATGACC TCTTCCTTGC chrV:311754-312294 + 57 2.02e-10 ATTGGACGCA ACCGGAATCGAACCGATGACC TCTTCCTTGC chrIX:183287-183707 + 1 2.02e-10 . AGCGGGATCGAACCGCTGATC CCCGCGTTAT chrII:197187-197843 - 74 2.02e-10 GTCTCT AGCGGGATCGAACCGCTGATC CCCGCGTTAT chrVII:779380-779913 - 63 1.03e-09 CTTGAGCGGT ACGAGAATCGAACCCGTGTCC CCACCTTGGA chrXVI:768909-769479 + 71 1.18e-09 AACTCCTCAT AGGGGGCTCGAACCCCTGACA TTTCGGTAT chrXV:438479-438970 - 36 1.18e-09 AACTCCTCAT AGGGGGCTCGAACCCCTGACA TTTCGGTATC chrVII:115329-115754 - 64 1.18e-09 AACTCCTCAT AGGGGGCTCGAACCCCTGACA TTTCGGTATC chrIV:359340-359905 - 72 1.18e-09 CTCCTCAT AGGGGGCTCGAACCCCTGACA TTTCGGTATC chrXIII:195949-196300 + 2 1.75e-09 G CTGGGAATTGAACCCAGGGCC TCTCGCATGC chrXIII:463343-463865 - 43 3.25e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrXII:426925-427489 - 18 3.25e-09 TTCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrXI:513112-513607 + 31 3.25e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrX:204544-205068 - 22 3.25e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrIX:336081-336622 + 56 3.25e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrIV:568614-569374 - 63 3.25e-09 TTCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrII:405686-406323 - 49 3.25e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrVIII:134027-134740 - 31 3.66e-09 AAAGGTCCTA CCCGGATTCGAACCGGGGTTG TCCGGATCAA chrV:130825-131420 + 18 3.66e-09 ATAGGTCTTA CCCGGATTCGAACCGGGGTTG TTCGGATCAA chrIII:168148-168534 + 18 3.66e-09 AAAGGTCCTA CCCGGATTCGAACCGGGGTTG TCCGGATCAA chrII:326421-327190 + 45 5.18e-09 TTTGATCCAA CCGAGGTTCGAACTCGGGATC TTCGCCGTGT chrVII:823342-823715 - 49 5.80e-09 AATGATTTCG CCCAGGATCGAACTGGGGACG TTCTGCGTGT chrVII:412072-412581 + 26 5.80e-09 CTTGATTTCG CCCAGGATCGAACTGGGGACG TTCTGCGTGT chrXIII:747720-748129 + 26 6.48e-09 AACACTCACG ATGGGGGTCGAACCCATAATC TTCTGATTAG chrXI:162278-162735 + 39 6.48e-09 AACACTCACG ATGGGGGTCGAACCCATAATC TTCTGATTAG chrX:374173-374925 + 15 6.48e-09 AGCACTCACG ATGGGGGTCGAACCCATAATC TTCTGATTAG chrX:355179-355751 - 2 6.48e-09 AGCACTCACG ATGGGGGTCGAACCCATAATC T chrXVI:856739-857154 - 50 1.23e-08 AATGGACGAG TCCGGAATCGAACCGGAGACC TCTCCCATGC chrXI:517798-518249 - 59 1.23e-08 AATGGACGAG TCCGGAATCGAACCGGAGACC TCTCCCATGC chrIV:410141-410786 - 10 1.23e-08 TTTGGACGAG TCCGGAATCGAACCGGAGACC TCTCCCATG chrVII:700120-701281 - 78 1.82e-08 CC GCGGGGTTTGAACCCGCGCCT CCGAAGAGAT chrXIII:808049-808547 + 6 2.43e-08 TCCCA CCCGGATTCGAACTGGGGTTG TTCGGATCAG chrXV:353848-354312 + 19 3.82e-08 AATGCTTCCA ATCGGATTTGAACCGATGATC TCCACATTAC chrII:266194-266689 - 31 3.82e-08 AATGCTTCCA ATCGGATTTGAACCGATGATC TCCACATTAC chrXIII:378965-379605 + 76 6.90e-08 ATTGAAACGG ACAGGAATTGAACCTGCAACC CTTC chrX:415670-416241 + 34 6.90e-08 ATTGAAACGG ACAGGAATTGAACCTGCAACC CTTCGATTGC chrXI:490746-491373 - 3 7.47e-08 TTCTTCCCCG CCAGGACTTGAACCTGGAATC TT chrV:492124-492570 + 63 7.47e-08 TCCTTCCCCG CCAGGACTTGAACCTGGAATC TTCTGGTTCG chrII:642851-643253 + 13 8.09e-08 GAAGCTCGCA CTCAGGATCGAACTAAGGACC AACAGATTTG chrXVI:560005-560496 + 6 8.75e-08 GAATT CTGTGGATCGAACACAGGACC TCCAGATAAC chrVIII:358305-358757 + 5 8.75e-08 AATT CTGTGGATCGAACACAGGACC TCCAGATAAC chrXIII:837742-838240 - 47 1.02e-07 TATCTCCCGG GGGCGAGTCGAACGCCCGATC TCAAGATTTC chrIV:946156-946627 - 31 1.02e-07 AATCTCCCGG GGGCGAGTCGAACGCCCGATC TCAAGATTTC chrXVI:810580-810873 - 45 1.28e-07 TACGACCCCA GTGAGGGTTGAACTCACGATC TTGCGATTAA chrXV:228096-228746 - 5 1.28e-07 AACGACCCCA GTGAGGGTTGAACTCACGATC TTGC chrXIV:632430-632908 - 25 1.28e-07 AACGACCCCA GTGAGGGTTGAACTCACGATC TTGCGATTAA chrXII:975774-976188 + 60 1.28e-07 AACGACCCCA GTGAGGGTTGAACTCACGATC TTGCGATTAA chrXIII:572659-573144 + 40 1.58e-07 TGTGCTCCAG GGGAGGTTCGAACTCTCGACC TTCAGATTAT chrXIV:725747-726635 + 1 4.39e-07 . GCGAGGTTCGAACTCGCGCGG ACAACCGTCC chrXII:167667-168257 + 40 4.65e-07 AACGACAACT GCAGGACTCGAACCTGCGCGG GCAAAGCCCA chrIV:980761-981161 + 71 4.65e-07 AACGACAACT GCAGGACTCGAACCTGCGCGG GCAAAGCCC chrII:226969-227359 - 14 4.65e-07 AACGACAACT GCAGGACTCGAACCTGCGCGG GCAAAGCCCA chrXVI:744052-744599 - 52 5.20e-07 TTTGCCACCT GTCAGAATTGAACTAACGACC TTTGCATTAC chrVII:1004035-1004438 - 73 5.20e-07 GCCACCT GTCAGAATTGAACTAACGACC TTTGCATTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:860110-860678 7.2e-11 76_[-1]_3 chrXV:226433-226893 7.2e-11 5_[+1]_74 chrVII:845401-846076 7.2e-11 2_[-1]_77 chrVI:180699-181262 7.2e-11 51_[+1]_28 chrXI:140685-141366 1e-10 50_[+1]_29 chrVII:541705-542165 1e-10 7_[-1]_72 chrV:354671-355364 1e-10 9_[-1]_70 chrIV:1016947-1017518 1e-10 32_[+1]_47 chrII:644931-645451 1e-10 68_[-1]_11 chrXIII:480410-480831 1.7e-10 58_[+1]_21 chrX:414743-415335 1.7e-10 20_[-1]_59 chrIX:299973-300473 1.7e-10 62_[+1]_17 chrIII:151146-151509 1.7e-10 14_[+1]_65 chrXV:853651-854827 2e-10 5_[+1]_74 chrXIV:569768-570076 2e-10 2_[+1]_77 chrXII:1051919-1052217 2e-10 60_[+1]_19 chrXII:214685-215063 2e-10 66_[+1]_13 chrV:311754-312294 2e-10 56_[+1]_23 chrIX:183287-183707 2e-10 [+1]_79 chrII:197187-197843 2e-10 73_[-1]_6 chrVII:779380-779913 1e-09 62_[-1]_17 chrXVI:768909-769479 1.2e-09 70_[+1]_9 chrXV:438479-438970 1.2e-09 35_[-1]_44 chrVII:115329-115754 1.2e-09 63_[-1]_16 chrIV:359340-359905 1.2e-09 71_[-1]_8 chrXIII:195949-196300 1.8e-09 1_[+1]_78 chrXIII:463343-463865 3.3e-09 42_[-1]_37 chrXII:426925-427489 3.3e-09 17_[-1]_62 chrXI:513112-513607 3.3e-09 30_[+1]_49 chrX:204544-205068 3.3e-09 21_[-1]_58 chrIX:336081-336622 3.3e-09 55_[+1]_24 chrIV:568614-569374 3.3e-09 62_[-1]_17 chrII:405686-406323 3.3e-09 48_[-1]_31 chrVIII:134027-134740 3.7e-09 30_[-1]_49 chrV:130825-131420 3.7e-09 17_[+1]_62 chrIII:168148-168534 3.7e-09 17_[+1]_62 chrII:326421-327190 5.2e-09 44_[+1]_35 chrVII:823342-823715 5.8e-09 48_[-1]_31 chrVII:412072-412581 5.8e-09 25_[+1]_54 chrXIII:747720-748129 6.5e-09 25_[+1]_54 chrXI:162278-162735 6.5e-09 38_[+1]_41 chrX:374173-374925 6.5e-09 14_[+1]_65 chrX:355179-355751 6.5e-09 1_[-1]_78 chrXVI:856739-857154 1.2e-08 49_[-1]_30 chrXI:517798-518249 1.2e-08 58_[-1]_21 chrIV:410141-410786 1.2e-08 9_[-1]_70 chrVII:700120-701281 1.8e-08 77_[-1]_2 chrXIII:808049-808547 2.4e-08 5_[+1]_74 chrXV:353848-354312 3.8e-08 18_[+1]_61 chrII:266194-266689 3.8e-08 30_[-1]_49 chrXIII:378965-379605 6.9e-08 75_[+1]_4 chrX:415670-416241 6.9e-08 33_[+1]_46 chrXI:490746-491373 7.5e-08 2_[-1]_77 chrV:492124-492570 7.5e-08 62_[+1]_17 chrII:642851-643253 8.1e-08 12_[+1]_67 chrXVI:560005-560496 8.7e-08 5_[+1]_74 chrVIII:358305-358757 8.7e-08 4_[+1]_75 chrXIII:837742-838240 1e-07 46_[-1]_33 chrIV:946156-946627 1e-07 30_[-1]_49 chrXVI:810580-810873 1.3e-07 44_[-1]_35 chrXV:228096-228746 1.3e-07 4_[-1]_75 chrXIV:632430-632908 1.3e-07 24_[-1]_55 chrXII:975774-976188 1.3e-07 59_[+1]_20 chrXIII:572659-573144 1.6e-07 39_[+1]_40 chrXIV:725747-726635 4.4e-07 [+1]_79 chrXII:167667-168257 4.7e-07 39_[+1]_40 chrIV:980761-981161 4.7e-07 70_[+1]_9 chrII:226969-227359 4.7e-07 13_[-1]_66 chrXVI:744052-744599 5.2e-07 51_[-1]_28 chrVII:1004035-1004438 5.2e-07 72_[-1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MBSGGRATCGAACCSVBGAYC width=21 seqs=70 chrXVI:860110-860678 ( 77) CCCGGAATCGAACCGGGGGCC 1 chrXV:226433-226893 ( 6) CCCGGAATCGAACCGGGGGCC 1 chrVII:845401-846076 ( 3) CCCGGAATCGAACCGGGGGCC 1 chrVI:180699-181262 ( 52) CCCGGAATCGAACCGGGGGCC 1 chrXI:140685-141366 ( 51) CGGGGAGTCGAACCCCGGTCT 1 chrVII:541705-542165 ( 8) CGGGGAGTCGAACCCCGGTCT 1 chrV:354671-355364 ( 10) CGGGGAGTCGAACCCCGGTCT 1 chrIV:1016947-1017518 ( 33) CGGGGAGTCGAACCCCGGTCT 1 chrII:644931-645451 ( 69) CGGGGAGTCGAACCCCGGTCT 1 chrXIII:480410-480831 ( 59) AGGGGGCTCGAACCCCTAACC 1 chrX:414743-415335 ( 21) AGGGGGCTCGAACCCCTAACC 1 chrIX:299973-300473 ( 63) AGGGGGCTCGAACCCCTAACC 1 chrIII:151146-151509 ( 15) AGGGGGCTCGAACCCCTAACC 1 chrXV:853651-854827 ( 6) ACCGGAATCGAACCGATGACC 1 chrXIV:569768-570076 ( 3) AGCGGGATCGAACCGCTGATC 1 chrXII:1051919-1052217 ( 61) AGCGGGATCGAACCGCTGATC 1 chrXII:214685-215063 ( 67) ACCGGAATCGAACCGATGACC 1 chrV:311754-312294 ( 57) ACCGGAATCGAACCGATGACC 1 chrIX:183287-183707 ( 1) AGCGGGATCGAACCGCTGATC 1 chrII:197187-197843 ( 74) AGCGGGATCGAACCGCTGATC 1 chrVII:779380-779913 ( 63) ACGAGAATCGAACCCGTGTCC 1 chrXVI:768909-769479 ( 71) AGGGGGCTCGAACCCCTGACA 1 chrXV:438479-438970 ( 36) AGGGGGCTCGAACCCCTGACA 1 chrVII:115329-115754 ( 64) AGGGGGCTCGAACCCCTGACA 1 chrIV:359340-359905 ( 72) AGGGGGCTCGAACCCCTGACA 1 chrXIII:195949-196300 ( 2) CTGGGAATTGAACCCAGGGCC 1 chrXIII:463343-463865 ( 43) CGGGGAATTGAACCCCGATCT 1 chrXII:426925-427489 ( 18) CGGGGAATTGAACCCCGATCT 1 chrXI:513112-513607 ( 31) CGGGGAATTGAACCCCGATCT 1 chrX:204544-205068 ( 22) CGGGGAATTGAACCCCGATCT 1 chrIX:336081-336622 ( 56) CGGGGAATTGAACCCCGATCT 1 chrIV:568614-569374 ( 63) CGGGGAATTGAACCCCGATCT 1 chrII:405686-406323 ( 49) CGGGGAATTGAACCCCGATCT 1 chrVIII:134027-134740 ( 31) CCCGGATTCGAACCGGGGTTG 1 chrV:130825-131420 ( 18) CCCGGATTCGAACCGGGGTTG 1 chrIII:168148-168534 ( 18) CCCGGATTCGAACCGGGGTTG 1 chrII:326421-327190 ( 45) CCGAGGTTCGAACTCGGGATC 1 chrVII:823342-823715 ( 49) CCCAGGATCGAACTGGGGACG 1 chrVII:412072-412581 ( 26) CCCAGGATCGAACTGGGGACG 1 chrXIII:747720-748129 ( 26) ATGGGGGTCGAACCCATAATC 1 chrXI:162278-162735 ( 39) ATGGGGGTCGAACCCATAATC 1 chrX:374173-374925 ( 15) ATGGGGGTCGAACCCATAATC 1 chrX:355179-355751 ( 2) ATGGGGGTCGAACCCATAATC 1 chrXVI:856739-857154 ( 50) TCCGGAATCGAACCGGAGACC 1 chrXI:517798-518249 ( 59) TCCGGAATCGAACCGGAGACC 1 chrIV:410141-410786 ( 10) TCCGGAATCGAACCGGAGACC 1 chrVII:700120-701281 ( 78) GCGGGGTTTGAACCCGCGCCT 1 chrXIII:808049-808547 ( 6) CCCGGATTCGAACTGGGGTTG 1 chrXV:353848-354312 ( 19) ATCGGATTTGAACCGATGATC 1 chrII:266194-266689 ( 31) ATCGGATTTGAACCGATGATC 1 chrXIII:378965-379605 ( 76) ACAGGAATTGAACCTGCAACC 1 chrX:415670-416241 ( 34) ACAGGAATTGAACCTGCAACC 1 chrXI:490746-491373 ( 3) CCAGGACTTGAACCTGGAATC 1 chrV:492124-492570 ( 63) CCAGGACTTGAACCTGGAATC 1 chrII:642851-643253 ( 13) CTCAGGATCGAACTAAGGACC 1 chrXVI:560005-560496 ( 6) CTGTGGATCGAACACAGGACC 1 chrVIII:358305-358757 ( 5) CTGTGGATCGAACACAGGACC 1 chrXIII:837742-838240 ( 47) GGGCGAGTCGAACGCCCGATC 1 chrIV:946156-946627 ( 31) GGGCGAGTCGAACGCCCGATC 1 chrXVI:810580-810873 ( 45) GTGAGGGTTGAACTCACGATC 1 chrXV:228096-228746 ( 5) GTGAGGGTTGAACTCACGATC 1 chrXIV:632430-632908 ( 25) GTGAGGGTTGAACTCACGATC 1 chrXII:975774-976188 ( 60) GTGAGGGTTGAACTCACGATC 1 chrXIII:572659-573144 ( 40) GGGAGGTTCGAACTCTCGACC 1 chrXIV:725747-726635 ( 1) GCGAGGTTCGAACTCGCGCGG 1 chrXII:167667-168257 ( 40) GCAGGACTCGAACCTGCGCGG 1 chrIV:980761-981161 ( 71) GCAGGACTCGAACCTGCGCGG 1 chrII:226969-227359 ( 14) GCAGGACTCGAACCTGCGCGG 1 chrXVI:744052-744599 ( 52) GTCAGAATTGAACTAACGACC 1 chrVII:1004035-1004438 ( 73) GTCAGAATTGAACTAACGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46160 bayes= 10.7494 E= 1.5e-206 15 112 7 -285 -1277 102 102 -44 -163 91 151 -1277 -74 -273 199 -344 -1277 -1277 239 -1277 92 -1277 112 -1277 56 -3 17 -112 -1277 -1277 -1277 169 -1277 188 -1277 -5 -1277 -1277 239 -1277 169 -1277 -1277 -1277 169 -1277 -1277 -1277 -1277 239 -1277 -1277 -344 199 -273 -74 -285 151 72 -163 -19 97 85 -443 -285 27 112 2 -19 -1277 194 -1277 99 -141 -141 -35 -1277 169 -173 8 -244 169 -41 -74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 70 E= 1.5e-206 0.342857 0.414286 0.200000 0.042857 0.000000 0.385714 0.385714 0.228571 0.100000 0.357143 0.542857 0.000000 0.185714 0.028571 0.757143 0.028571 0.000000 0.000000 1.000000 0.000000 0.585714 0.000000 0.414286 0.000000 0.457143 0.185714 0.214286 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.028571 0.757143 0.028571 0.185714 0.042857 0.542857 0.314286 0.100000 0.271429 0.371429 0.342857 0.014286 0.042857 0.228571 0.414286 0.314286 0.271429 0.000000 0.728571 0.000000 0.614286 0.071429 0.071429 0.242857 0.000000 0.614286 0.057143 0.328571 0.057143 0.614286 0.142857 0.185714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 regular expression -------------------------------------------------------------------------------- [CAG][CGT][GC]GG[AG][AG]T[CT]GAACC[CG][CGA][GTC][GA][AT][CT]C -------------------------------------------------------------------------------- Time 326.33 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCTYWWMCMACTRVGCYAHV MEME-2 width = 21 sites = 91 llr = 1213 E-value = 8.8e-158 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTRVGCYAHV MEME-2 Description -------------------------------------------------------------------------------- Simplified A 121:1355:3a::433::a33 pos.-specific C 545241:4a5:8:23:a6:43 probability G 44121:21:1:::347::::3 matrix T ::26463::::2a1:::4:21 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * * Relative 1.4 * *** * * Entropy 1.2 * *** **** (19.2 bits) 1.0 * * *** **** 0.7 ** ****** ***** 0.5 **** * ****** ****** 0.2 ********************* 0.0 --------------------- Multilevel CGCTTTAACCACTAGGCCACG consensus GCTCCATC A GAA T AC sequence C TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTRVGCYAHV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:258980-259530 + 9 2.45e-10 TAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATACT chrIV:1305434-1305852 - 42 2.45e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTTAAT chrXV:274482-274973 - 1 1.01e-09 AGCAGGGCAT CGCCTTAACCACTCGGCCACT chrXIV:602072-602520 - 71 1.01e-09 TAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATTGT chrXIV:569768-570076 + 43 1.01e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATTGT chrXII:734583-734999 - 66 1.01e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAAACT chrVI:191283-191939 + 27 1.01e-09 AGCAGGGCAT CGCCTTAACCACTCGGCCACT GGGACAGAAT chrV:550985-551758 + 12 1.01e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTGTAA chrIX:183287-183707 + 41 1.01e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAGGAA chrIV:1150720-1151211 + 1 1.01e-09 . CGCCTTAACCACTCGGCCACT GGGACTGAAA chrII:197187-197843 - 34 1.01e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTTGAT chrXV:853651-854827 + 45 1.54e-09 GCAAGGGAAG CGCGCTACCAACTGCGCCATG TGCCCTGATG chrXVI:856739-857154 - 11 1.90e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCGAATC chrXII:656827-657206 + 15 1.90e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCAATTT chrXI:517798-518249 - 20 1.90e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCATAGT chrXI:219647-220097 - 78 1.90e-09 AG CGCGCTACCGACTACGCCACA CGCCCTATTT chrXVI:689220-689873 - 74 2.32e-09 GTCTGT CGCCTTAACCACTCGGCCATA GTGCCCAAAA chrX:617674-618188 - 43 2.32e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrXIV:725747-726635 + 51 2.83e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCAAAGA chrXII:962827-963269 + 32 2.83e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTCGA chrXI:83956-84450 - 60 2.83e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCATACA chrX:424269-424722 + 45 2.83e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCATCTT chrXI:578578-579380 - 41 3.44e-09 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrVII:115329-115754 - 2 3.44e-09 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC A chrIV:359340-359905 - 10 3.44e-09 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAG chrXII:605162-605613 + 70 1.42e-08 ATAAGCACGA AGCTCTAACCACTGAGCTACA CGAGCATTTT chrXV:340137-340585 + 35 1.67e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAACAGAT chrXVI:810580-810873 - 5 2.67e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGT chrXI:74390-74869 - 50 2.67e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTAATT chrVII:730715-731550 - 60 2.67e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTTTTT chrIII:127508-127874 - 80 2.67e-08 . GCCTTAACCAACTTGGCCATG GAGTCATTTT chrXV:353848-354312 + 58 3.59e-08 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCAGTAA chrIV:1351954-1353108 + 32 3.59e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrIV:1201501-1202019 - 45 3.59e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrIII:151146-151509 + 54 3.59e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTT chrXVI:622302-622898 + 56 1.21e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCATATC chrXVI:560005-560496 + 64 1.21e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTCAAT chrVIII:358305-358757 + 63 1.21e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACT chrII:36229-36604 - 37 1.21e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACA chrXIII:420315-420984 + 37 2.21e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCTGTTA chrVII:823342-823715 - 9 2.21e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACT chrVII:412072-412581 + 66 2.21e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAGTTT chrXVI:860110-860678 - 40 2.77e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTGTT chrXV:226433-226893 + 43 2.77e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTGAAT chrXIII:572659-573144 + 79 2.77e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT G chrX:422650-423218 - 58 2.77e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCATACA chrX:396546-397030 + 33 2.77e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTACT chrX:390890-391337 + 27 2.77e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCACTAT chrVI:162026-162388 - 76 2.77e-07 CGTT GGATTTTACCACTAAACCACT TGCGCTTGTT chrXVI:731555-732320 - 1 3.09e-07 GCAAAGGTAG CCCACTTACCACTCAGCTATG chrXIV:546547-547645 - 53 3.45e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGATTA chrXIII:195949-196300 + 71 3.45e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCTTGT chrVII:700120-701281 - 30 3.45e-07 TCGACCTGAC GCCTTAGACCACTCGGCCAGA GTACCAATTC chrI:138945-139375 - 47 3.45e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGTACT chrXI:457995-459217 - 6 4.26e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACC chrX:542803-543270 + 33 4.72e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTATTT chrX:353991-354479 - 64 4.72e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTGATA chrVI:210439-211001 + 12 4.72e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTCGTT chrVI:167225-167672 - 44 4.72e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTCATT chrXVI:338461-339298 + 65 1.33e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCACG GCGCTGCTAA chrX:517680-518107 + 16 1.33e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCACG GCGCTTAACT chrV:99906-100314 - 78 1.33e-06 CT GCGCGCTTCCACTGCGCCACG GCGCTTAGCC chrXVI:744052-744599 - 14 1.58e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCTTTTA chrVII:1004035-1004438 - 35 1.58e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCAAACC chrVII:661533-661966 - 55 1.58e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCAAATT chrV:78052-79419 - 34 2.19e-06 TCTTGTACAA GGTTCTACCGACGACACCATC GATGGACCAT chrXV:110859-111204 + 27 2.38e-06 GGAAGGGTGG GATGATAACCACTACACTAAC CGCCCGGGTT chrVII:779380-779913 - 25 2.38e-06 GGAAGGGTGG GATGATAACCACTACACTAAC CGCCCGGGGT chrXI:382219-382466 + 65 3.74e-06 CGTCAGTAAC CGTTCCACCCATTCCTCCACG GTATGTAGAT chrXIII:747720-748129 + 64 4.02e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTAGTC chrXI:162278-162735 + 77 4.02e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGA chrX:374173-374925 + 53 4.02e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTACTA chrXIII:463343-463865 - 5 4.31e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGG chrXI:513112-513607 + 69 4.31e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAACGTT chrX:355179-355751 - 46 4.31e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrVII:544418-544863 + 33 4.31e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrVII:531371-531825 - 67 4.31e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGTAA chrIV:568614-569374 - 25 4.31e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrII:405686-406323 - 11 4.31e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrXIII:808049-808547 + 44 4.62e-06 CAGAACCGAA AGTGATAACCACTACACTATA GGACCTTTTT chrXI:302688-303212 - 23 4.62e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTTCATCTT chrV:130825-131420 + 56 4.62e-06 CAAAACCGAA AGTGATAACCACTACACTATA AAACCTCTTA chrIV:802549-803033 + 36 4.62e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCGACAA chrIII:168148-168534 + 56 4.62e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCAGGAC chrXI:261137-261932 + 37 6.07e-06 ACGACGCTAC CGGTGTTGCGATTAGACCAAC TAGTAAGAGC chrIX:391486-392491 - 16 8.89e-06 CTCTTCTACT CCAGTAACCAGCTCCACCACT GAAAGCTCTT chrII:642851-643253 + 51 8.89e-06 TTGCAATCTG CTGCGCTACCACTGCGCCATA CGAGCTTTCT chrXIV:631712-632114 + 29 9.45e-06 CCCTAAGCGA GAATCATACCTCTAGACCACA CGCCCGGTAG chrXII:951044-951829 + 70 1.00e-05 GTTGTCTAAT GCTGCTAACACTTCAGCCACA TTATCATCTT chrV:469085-469765 - 79 1.00e-05 C CGACTAGACCACGAAACCAAT TATTTCTTGG chrVIII:62563-63524 - 62 1.96e-05 CCAACAGCTG GGATATTGCAACTTCACCATT AAAGAACGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTRVGCYAHV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:258980-259530 2.4e-10 8_[+2]_71 chrIV:1305434-1305852 2.4e-10 41_[-2]_38 chrXV:274482-274973 1e-09 [-2]_79 chrXIV:602072-602520 1e-09 70_[-2]_9 chrXIV:569768-570076 1e-09 42_[+2]_37 chrXII:734583-734999 1e-09 65_[-2]_14 chrVI:191283-191939 1e-09 26_[+2]_53 chrV:550985-551758 1e-09 11_[+2]_68 chrIX:183287-183707 1e-09 40_[+2]_39 chrIV:1150720-1151211 1e-09 [+2]_79 chrII:197187-197843 1e-09 33_[-2]_46 chrXV:853651-854827 1.5e-09 44_[+2]_35 chrXVI:856739-857154 1.9e-09 10_[-2]_69 chrXII:656827-657206 1.9e-09 14_[+2]_65 chrXI:517798-518249 1.9e-09 19_[-2]_60 chrXI:219647-220097 1.9e-09 77_[-2]_2 chrXVI:689220-689873 2.3e-09 73_[-2]_6 chrX:617674-618188 2.3e-09 42_[-2]_37 chrXIV:725747-726635 2.8e-09 50_[+2]_29 chrXII:962827-963269 2.8e-09 31_[+2]_48 chrXI:83956-84450 2.8e-09 59_[-2]_20 chrX:424269-424722 2.8e-09 44_[+2]_35 chrXI:578578-579380 3.4e-09 40_[-2]_39 chrVII:115329-115754 3.4e-09 1_[-2]_78 chrIV:359340-359905 3.4e-09 9_[-2]_70 chrXII:605162-605613 1.4e-08 69_[+2]_10 chrXV:340137-340585 1.7e-08 34_[+2]_45 chrXVI:810580-810873 2.7e-08 4_[-2]_75 chrXI:74390-74869 2.7e-08 49_[-2]_30 chrVII:730715-731550 2.7e-08 59_[-2]_20 chrIII:127508-127874 2.7e-08 79_[-2] chrXV:353848-354312 3.6e-08 57_[+2]_22 chrIV:1351954-1353108 3.6e-08 31_[+2]_48 chrIV:1201501-1202019 3.6e-08 44_[-2]_35 chrIII:151146-151509 3.6e-08 53_[+2]_26 chrXVI:622302-622898 1.2e-07 55_[+2]_24 chrXVI:560005-560496 1.2e-07 63_[+2]_16 chrVIII:358305-358757 1.2e-07 62_[+2]_17 chrII:36229-36604 1.2e-07 36_[-2]_43 chrXIII:420315-420984 2.2e-07 36_[+2]_43 chrVII:823342-823715 2.2e-07 8_[-2]_71 chrVII:412072-412581 2.2e-07 65_[+2]_14 chrXVI:860110-860678 2.8e-07 39_[-2]_40 chrXV:226433-226893 2.8e-07 42_[+2]_37 chrXIII:572659-573144 2.8e-07 78_[+2]_1 chrX:422650-423218 2.8e-07 57_[-2]_22 chrX:396546-397030 2.8e-07 32_[+2]_47 chrX:390890-391337 2.8e-07 26_[+2]_53 chrVI:162026-162388 2.8e-07 75_[-2]_4 chrXVI:731555-732320 3.1e-07 [-2]_79 chrXIV:546547-547645 3.4e-07 52_[-2]_27 chrXIII:195949-196300 3.4e-07 70_[+2]_9 chrVII:700120-701281 3.4e-07 29_[-2]_50 chrI:138945-139375 3.4e-07 46_[-2]_33 chrXI:457995-459217 4.3e-07 5_[-2]_74 chrX:542803-543270 4.7e-07 32_[+2]_47 chrX:353991-354479 4.7e-07 63_[-2]_16 chrVI:210439-211001 4.7e-07 11_[+2]_68 chrVI:167225-167672 4.7e-07 43_[-2]_36 chrXVI:338461-339298 1.3e-06 64_[+2]_15 chrX:517680-518107 1.3e-06 15_[+2]_64 chrV:99906-100314 1.3e-06 77_[-2]_2 chrXVI:744052-744599 1.6e-06 13_[-2]_66 chrVII:1004035-1004438 1.6e-06 34_[-2]_45 chrVII:661533-661966 1.6e-06 54_[-2]_25 chrV:78052-79419 2.2e-06 33_[-2]_46 chrXV:110859-111204 2.4e-06 26_[+2]_53 chrVII:779380-779913 2.4e-06 24_[-2]_55 chrXI:382219-382466 3.7e-06 64_[+2]_15 chrXIII:747720-748129 4e-06 63_[+2]_16 chrXI:162278-162735 4e-06 76_[+2]_3 chrX:374173-374925 4e-06 52_[+2]_27 chrXIII:463343-463865 4.3e-06 4_[-2]_75 chrXI:513112-513607 4.3e-06 68_[+2]_11 chrX:355179-355751 4.3e-06 45_[-2]_34 chrVII:544418-544863 4.3e-06 32_[+2]_47 chrVII:531371-531825 4.3e-06 66_[-2]_13 chrIV:568614-569374 4.3e-06 24_[-2]_55 chrII:405686-406323 4.3e-06 10_[-2]_69 chrXIII:808049-808547 4.6e-06 43_[+2]_36 chrXI:302688-303212 4.6e-06 22_[-2]_57 chrV:130825-131420 4.6e-06 55_[+2]_24 chrIV:802549-803033 4.6e-06 35_[+2]_44 chrIII:168148-168534 4.6e-06 55_[+2]_24 chrXI:261137-261932 6.1e-06 36_[+2]_43 chrIX:391486-392491 8.9e-06 15_[-2]_64 chrII:642851-643253 8.9e-06 50_[+2]_29 chrXIV:631712-632114 9.4e-06 28_[+2]_51 chrXII:951044-951829 1e-05 69_[+2]_10 chrV:469085-469765 1e-05 78_[-2]_1 chrVIII:62563-63524 2e-05 61_[-2]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTRVGCYAHV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCTYWWMCMACTRVGCYAHV width=21 seqs=91 chrXIII:258980-259530 ( 9) CGCCTTAACCACTCGGCCAAG 1 chrIV:1305434-1305852 ( 42) CGCCTTAACCACTCGGCCAAG 1 chrXV:274482-274973 ( 1) CGCCTTAACCACTCGGCCACT 1 chrXIV:602072-602520 ( 71) GCCTTAACCAACTGGGCCAAG 1 chrXIV:569768-570076 ( 43) GCCTTAACCAACTGGGCCAAG 1 chrXII:734583-734999 ( 66) GCCTTAACCAACTGGGCCAAG 1 chrVI:191283-191939 ( 27) CGCCTTAACCACTCGGCCACT 1 chrV:550985-551758 ( 12) GCCTTAACCAACTGGGCCAAG 1 chrIX:183287-183707 ( 41) GCCTTAACCAACTGGGCCAAG 1 chrIV:1150720-1151211 ( 1) CGCCTTAACCACTCGGCCACT 1 chrII:197187-197843 ( 34) GCCTTAACCAACTGGGCCAAG 1 chrXV:853651-854827 ( 45) CGCGCTACCAACTGCGCCATG 1 chrXVI:856739-857154 ( 11) CGCGCTACCGACTACGCCACA 1 chrXII:656827-657206 ( 15) CGCGCTACCGACTACGCCACA 1 chrXI:517798-518249 ( 20) CGCGCTACCGACTACGCCACA 1 chrXI:219647-220097 ( 78) CGCGCTACCGACTACGCCACA 1 chrXVI:689220-689873 ( 74) CGCCTTAACCACTCGGCCATA 1 chrX:617674-618188 ( 43) GCCTTAAACCACTCGGCCAAA 1 chrXIV:725747-726635 ( 51) GCCTTAGACCACTCGGCCAAC 1 chrXII:962827-963269 ( 32) GCCTTAGACCACTCGGCCAAC 1 chrXI:83956-84450 ( 60) GCCTTAGACCACTCGGCCAAC 1 chrX:424269-424722 ( 45) GCCTTAGACCACTCGGCCAAC 1 chrXI:578578-579380 ( 41) CGCTCTACCAACTGAGCTAAC 1 chrVII:115329-115754 ( 2) CGCTCTACCAACTGAGCTAAC 1 chrIV:359340-359905 ( 10) CGCTCTACCAACTGAGCTAAC 1 chrXII:605162-605613 ( 70) AGCTCTAACCACTGAGCTACA 1 chrXV:340137-340585 ( 35) CGCCGTGACCATTGGGCCACG 1 chrXVI:810580-810873 ( 5) GCCTTAACCAACTTGGCCATG 1 chrXI:74390-74869 ( 50) GCCTTAACCAACTTGGCCATG 1 chrVII:730715-731550 ( 60) GCCTTAACCAACTTGGCCATG 1 chrIII:127508-127874 ( 80) GCCTTAACCAACTTGGCCATG 1 chrXV:353848-354312 ( 58) CGCCTTACCAACTTGGCCATA 1 chrIV:1351954-1353108 ( 32) CGCGCTACCGATTGCGCCAAC 1 chrIV:1201501-1202019 ( 45) CGCGCTACCGATTGCGCCAAC 1 chrIII:151146-151509 ( 54) CGCGCTACCGATTGCGCCAAC 1 chrXVI:622302-622898 ( 56) CGCTCTCCCAACTGAGCTAAA 1 chrXVI:560005-560496 ( 64) CGCTCTCCCAACTGAGCTAAA 1 chrVIII:358305-358757 ( 63) CGCTCTCCCAACTGAGCTAAA 1 chrII:36229-36604 ( 37) CGCTCTCCCAACTGAGCTAAA 1 chrXIII:420315-420984 ( 37) GCCATAACCGACTAGACCACG 1 chrVII:823342-823715 ( 9) GCCATAACCGACTAGACCACG 1 chrVII:412072-412581 ( 66) GCCATAACCGACTAGACCACG 1 chrXVI:860110-860678 ( 40) GGATTTTACCACTAAACCACT 1 chrXV:226433-226893 ( 43) GGATTTTACCACTAAACCACT 1 chrXIII:572659-573144 ( 79) CGCTCTTCCTACTGAGCTACT 1 chrX:422650-423218 ( 58) CGCTCTTCCTACTGAGCTACT 1 chrX:396546-397030 ( 33) GGATTTTACCACTAAACCACT 1 chrX:390890-391337 ( 27) CGCTCTTCCTACTGAGCTACT 1 chrVI:162026-162388 ( 76) GGATTTTACCACTAAACCACT 1 chrXVI:731555-732320 ( 1) CCCACTTACCACTCAGCTATG 1 chrXIV:546547-547645 ( 53) GAATCATACCACTAGACCACA 1 chrXIII:195949-196300 ( 71) GAATCATACCACTAGACCACA 1 chrVII:700120-701281 ( 30) GCCTTAGACCACTCGGCCAGA 1 chrI:138945-139375 ( 47) GAATCATACCACTAGACCACA 1 chrXI:457995-459217 ( 6) GCCTTAGACCGCTCGGCCAAA 1 chrX:542803-543270 ( 33) CCTTAAACCAACTTGGCTACC 1 chrX:353991-354479 ( 64) CCTTAAACCAACTTGGCTACC 1 chrVI:210439-211001 ( 12) CCTTAAACCAACTTGGCTACC 1 chrVI:167225-167672 ( 44) CCTTAAACCAACTTGGCTACC 1 chrXVI:338461-339298 ( 65) GCGCGCTTCCACTGCGCCACG 1 chrX:517680-518107 ( 16) GCGCGCTTCCACTGCGCCACG 1 chrV:99906-100314 ( 78) GCGCGCTTCCACTGCGCCACG 1 chrXVI:744052-744599 ( 14) ACGCTCTACCACTAAGCTAAG 1 chrVII:1004035-1004438 ( 35) ACGCTCTACCACTAAGCTAAG 1 chrVII:661533-661966 ( 55) ACGCTCTACCACTAAGCTAAG 1 chrV:78052-79419 ( 34) GGTTCTACCGACGACACCATC 1 chrXV:110859-111204 ( 27) GATGATAACCACTACACTAAC 1 chrVII:779380-779913 ( 25) GATGATAACCACTACACTAAC 1 chrXI:382219-382466 ( 65) CGTTCCACCCATTCCTCCACG 1 chrXIII:747720-748129 ( 64) ACGCGTTGCCATTACGCCACG 1 chrXI:162278-162735 ( 77) ACGCGTTGCCATTACGCCACG 1 chrX:374173-374925 ( 53) ACGCGTTGCCATTACGCCACG 1 chrXIII:463343-463865 ( 5) CATTCTGACCATTAAACTATC 1 chrXI:513112-513607 ( 69) CATTCTGACCATTAAACTATC 1 chrX:355179-355751 ( 46) CATTCTGACCATTAAACTATC 1 chrVII:544418-544863 ( 33) CATTCTGACCATTAAACTATC 1 chrVII:531371-531825 ( 67) CATTCTGACCATTAAACTATC 1 chrIV:568614-569374 ( 25) CATTCTGACCATTAAACTATC 1 chrII:405686-406323 ( 11) CATTCTGACCATTAAACTATC 1 chrXIII:808049-808547 ( 44) AGTGATAACCACTACACTATA 1 chrXI:302688-303212 ( 23) AAGCTCTACCATTGAGCCACC 1 chrV:130825-131420 ( 56) AGTGATAACCACTACACTATA 1 chrIV:802549-803033 ( 36) AGTGATAACCACTACACTATA 1 chrIII:168148-168534 ( 56) AGTGATAACCACTACACTATA 1 chrXI:261137-261932 ( 37) CGGTGTTGCGATTAGACCAAC 1 chrIX:391486-392491 ( 16) CCAGTAACCAGCTCCACCACT 1 chrII:642851-643253 ( 51) CTGCGCTACCACTGCGCCATA 1 chrXIV:631712-632114 ( 29) GAATCATACCTCTAGACCACA 1 chrXII:951044-951829 ( 70) GCTGCTAACACTTCAGCCACA 1 chrV:469085-469765 ( 79) CGACTAGACCACGAAACCAAT 1 chrVIII:62563-63524 ( 62) GGATATTGCAACTTCACCATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTRVGCYAHV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46160 bayes= 10.0401 E= 8.8e-158 -123 131 106 -1315 -101 106 121 -481 -136 147 -53 -50 -282 21 -11 86 -136 97 -94 39 9 -94 -1315 88 74 -211 -21 -17 64 117 -179 -323 -1315 239 -1315 -1315 -12 153 -53 -323 163 -411 -311 -481 -1315 208 -1315 -65 -1315 -1315 -311 166 39 -3 64 -149 4 53 110 -1315 4 -1315 182 -481 -1315 239 -1315 -1315 -1315 177 -1315 18 169 -1315 -1315 -1315 14 110 -411 -36 -23 59 69 -112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTRVGCYAHV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 91 E= 8.8e-158 0.131868 0.472527 0.395604 0.000000 0.153846 0.395604 0.439560 0.010989 0.120879 0.527473 0.131868 0.219780 0.043956 0.219780 0.175824 0.560440 0.120879 0.373626 0.098901 0.406593 0.329670 0.098901 0.000000 0.571429 0.516484 0.043956 0.164835 0.274725 0.483516 0.428571 0.054945 0.032967 0.000000 1.000000 0.000000 0.000000 0.285714 0.549451 0.131868 0.032967 0.956044 0.010989 0.021978 0.010989 0.000000 0.802198 0.000000 0.197802 0.000000 0.000000 0.021978 0.978022 0.406593 0.186813 0.296703 0.109890 0.318681 0.274725 0.406593 0.000000 0.318681 0.000000 0.670330 0.010989 0.000000 1.000000 0.000000 0.000000 0.000000 0.648352 0.000000 0.351648 1.000000 0.000000 0.000000 0.000000 0.340659 0.406593 0.010989 0.241758 0.263736 0.285714 0.307692 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTRVGCYAHV MEME-2 regular expression -------------------------------------------------------------------------------- [CG][GC][CT][TC][TC][TA][AT][AC]C[CA]ACT[AG][GAC][GA]C[CT]A[CAT][GCA] -------------------------------------------------------------------------------- Time 630.35 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGCTTGTCGCGTG MEME-3 width = 15 sites = 10 llr = 216 E-value = 7.7e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGCTTGTCGCGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1::::::::::::: pos.-specific C ::a:a::::a:9:1: probability G a9:a:::a::a1a:9 matrix T :::::aa:a::::91 bits 2.4 * *** * ** * 2.2 * *** * ** * 1.9 ***** * **** * 1.7 ************* * Relative 1.4 ************* * Entropy 1.2 *************** (31.2 bits) 1.0 *************** 0.7 *************** 0.5 *************** 0.2 *************** 0.0 --------------- Multilevel GGCGCTTGTCGCGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCTTGTCGCGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXIII:463343-463865 + 26 1.08e-10 GGTCAGAATG GGCGCTTGTCGCGTG CCAGATCGGG chrXII:426925-427489 + 1 1.08e-10 . GGCGCTTGTCGCGTG CCAGATCGGG chrXI:513112-513607 - 54 1.08e-10 GGTCAGAATG GGCGCTTGTCGCGTG CCAGATCGGG chrX:355179-355751 + 67 1.08e-10 GGTCAGAATG GGCGCTTGTCGCGTG CCAGATCGGG chrX:204544-205068 + 5 1.08e-10 AATG GGCGCTTGTCGCGTG CCAGATCGGG chrVII:544418-544863 - 18 1.08e-10 GGTCAGAATG GGCGCTTGTCGCGTG CCAGATCGGG chrIX:336081-336622 - 79 1.08e-10 CAGAATG GGCGCTTGTCGCGTG CCAGATCGGG chrIV:568614-569374 + 46 1.08e-10 GGTCAGAATG GGCGCTTGTCGCGTG CCAGATCGGG chrII:405686-406323 + 32 1.08e-10 GGTCAGAATG GGCGCTTGTCGCGTG CCAGATCGGG chrXVI:879518-880554 + 2 7.88e-09 C GACGCTTGTCGGGCT CTCAAAGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCTTGTCGCGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:463343-463865 1.1e-10 25_[+3]_60 chrXII:426925-427489 1.1e-10 [+3]_85 chrXI:513112-513607 1.1e-10 53_[-3]_32 chrX:355179-355751 1.1e-10 66_[+3]_19 chrX:204544-205068 1.1e-10 4_[+3]_81 chrVII:544418-544863 1.1e-10 17_[-3]_68 chrIX:336081-336622 1.1e-10 78_[-3]_7 chrIV:568614-569374 1.1e-10 45_[+3]_40 chrII:405686-406323 1.1e-10 31_[+3]_54 chrXVI:879518-880554 7.9e-09 1_[+3]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCTTGTCGCGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGCTTGTCGCGTG width=15 seqs=10 chrXIII:463343-463865 ( 26) GGCGCTTGTCGCGTG 1 chrXII:426925-427489 ( 1) GGCGCTTGTCGCGTG 1 chrXI:513112-513607 ( 54) GGCGCTTGTCGCGTG 1 chrX:355179-355751 ( 67) GGCGCTTGTCGCGTG 1 chrX:204544-205068 ( 5) GGCGCTTGTCGCGTG 1 chrVII:544418-544863 ( 18) GGCGCTTGTCGCGTG 1 chrIX:336081-336622 ( 79) GGCGCTTGTCGCGTG 1 chrIV:568614-569374 ( 46) GGCGCTTGTCGCGTG 1 chrII:405686-406323 ( 32) GGCGCTTGTCGCGTG 1 chrXVI:879518-880554 ( 2) GACGCTTGTCGGGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCTTGTCGCGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 49622 bayes= 13.7506 E= 7.7e-025 -997 -997 239 -997 -163 -997 224 -997 -997 239 -997 -997 -997 -997 239 -997 -997 239 -997 -997 -997 -997 -997 169 -997 -997 -997 169 -997 -997 239 -997 -997 -997 -997 169 -997 239 -997 -997 -997 -997 239 -997 -997 224 -93 -997 -997 -997 239 -997 -997 -93 -997 154 -997 -997 224 -163 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCTTGTCGCGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 10 E= 7.7e-025 0.000000 0.000000 1.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.900000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCTTGTCGCGTG MEME-3 regular expression -------------------------------------------------------------------------------- GGCGCTTGTCGCGTG -------------------------------------------------------------------------------- Time 915.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71753-73279 7.21e-01 100 chrI:81931-82318 1.11e-01 100 chrI:138945-139375 3.10e-04 46_[-2(3.45e-07)]_33 chrI:142153-143691 3.84e-01 100 chrI:166173-166566 8.75e-01 100 chrI:181125-181606 1.39e-01 100 chrI:182280-183129 6.13e-02 100 chrII:9461-10004 1.94e-01 100 chrII:36229-36604 2.65e-04 36_[-2(1.21e-07)]_43 chrII:44786-45358 6.47e-01 100 chrII:59862-61322 4.44e-01 100 chrII:88025-88566 7.04e-01 100 chrII:89656-89984 8.53e-01 100 chrII:165099-165427 2.44e-01 100 chrII:167891-169644 5.68e-01 100 chrII:181339-181916 4.84e-01 100 chrII:197187-197843 1.31e-12 33_[-2(1.01e-09)]_19_[-1(2.02e-10)]_\ 6 chrII:226969-227359 1.75e-04 13_[-1(4.65e-07)]_66 chrII:236498-237337 9.09e-01 100 chrII:255087-255854 2.50e-01 100 chrII:256302-256784 2.04e-01 100 chrII:266194-266689 2.43e-04 30_[-1(3.82e-08)]_49 chrII:326421-327190 2.11e-05 44_[+1(5.18e-09)]_35 chrII:331902-332106 6.87e-01 100 chrII:332267-333938 4.10e-01 100 chrII:347416-348281 9.91e-01 100 chrII:350559-351026 7.62e-01 100 chrII:405686-406323 5.47e-15 10_[-2(4.31e-06)]_[+3(1.08e-10)]_2_\ [-1(3.25e-09)]_31 chrII:406644-407186 2.02e-02 100 chrII:415510-415932 4.99e-01 100 chrII:476841-477780 6.52e-01 100 chrII:556237-558453 5.05e-01 100 chrII:592363-593442 7.89e-01 100 chrII:603803-607123 6.11e-01 100 chrII:642851-643253 9.02e-07 12_[+1(8.09e-08)]_17_[+2(8.89e-06)]_\ 29 chrII:644931-645451 9.41e-08 68_[-1(1.03e-10)]_11 chrII:680397-681920 4.29e-01 100 chrIII:86-598 3.59e-01 100 chrIII:851-1856 9.78e-01 100 chrIII:57385-58912 1.07e-01 100 chrIII:81996-82657 2.42e-01 100 chrIII:90853-91117 2.84e-01 100 chrIII:123197-123808 9.57e-01 100 chrIII:127508-127874 3.47e-04 79_[-2(2.67e-08)] chrIII:137735-139024 1.49e-01 100 chrIII:142112-142961 7.79e-01 100 chrIII:149540-150205 7.12e-01 100 chrIII:151146-151509 4.60e-11 14_[+1(1.71e-10)]_18_[+2(3.59e-08)]_\ 26 chrIII:162558-163884 7.07e-01 100 chrIII:168148-168534 2.42e-08 17_[+1(3.66e-09)]_17_[+2(4.62e-06)]_\ 24 chrIII:177051-178795 2.43e-01 100 chrIII:221305-223249 1.45e-02 100 chrIII:227653-228587 8.95e-01 100 chrIII:295318-295886 1.79e-01 100 chrIV:45189-46174 7.87e-02 100 chrIV:83266-84153 8.80e-01 100 chrIV:116322-118249 2.69e-01 100 chrIV:129125-130973 9.02e-01 100 chrIV:216131-218085 4.24e-01 100 chrIV:220986-222388 9.35e-01 100 chrIV:229536-230737 3.91e-01 100 chrIV:305063-309538 2.67e-01 100 chrIV:309791-310191 2.15e-01 100 chrIV:321646-321941 1.93e-01 100 chrIV:331018-333349 7.17e-01 100 chrIV:340426-341656 3.68e-02 61_[-3(7.55e-05)]_24 chrIV:354928-356946 8.03e-02 100 chrIV:357796-358407 7.18e-01 100 chrIV:359340-359905 3.12e-11 9_[-2(3.44e-09)]_41_[-1(1.18e-09)]_\ 8 chrIV:371159-371919 5.63e-01 100 chrIV:410141-410786 1.24e-05 9_[-1(1.23e-08)]_70 chrIV:411262-411622 4.85e-02 100 chrIV:433856-435140 8.58e-01 100 chrIV:437540-438213 3.31e-01 100 chrIV:488038-489147 5.44e-01 100 chrIV:489551-491246 2.49e-01 100 chrIV:491434-492601 3.36e-02 100 chrIV:519662-520174 9.84e-01 100 chrIV:520719-521172 2.35e-01 100 chrIV:525428-527186 5.19e-02 100 chrIV:541302-541872 9.54e-01 100 chrIV:555782-556470 3.33e-01 100 chrIV:568614-569374 5.47e-15 24_[-2(4.31e-06)]_[+3(1.08e-10)]_2_\ [-1(3.25e-09)]_17 chrIV:579065-580692 9.12e-02 100 chrIV:619670-620174 7.02e-01 100 chrIV:644751-645379 5.90e-01 100 chrIV:667439-668254 5.71e-01 100 chrIV:757514-758208 3.46e-01 100 chrIV:768263-769130 2.54e-01 100 chrIV:802549-803033 2.52e-04 35_[+2(4.62e-06)]_44 chrIV:835785-836615 6.36e-01 100 chrIV:884259-884787 8.23e-01 100 chrIV:913953-914772 6.42e-01 100 chrIV:915372-916213 2.45e-01 100 chrIV:929279-930342 7.87e-01 100 chrIV:946156-946627 1.16e-04 30_[-1(1.02e-07)]_49 chrIV:980761-981161 2.78e-04 70_[+1(4.65e-07)]_9 chrIV:992721-993274 2.43e-01 100 chrIV:1005542-1007437 6.28e-02 12_[+2(9.62e-05)]_67 chrIV:1012779-1013911 8.09e-01 100 chrIV:1016947-1017518 4.21e-07 32_[+1(1.03e-10)]_47 chrIV:1075120-1075753 3.88e-01 100 chrIV:1094919-1095653 9.60e-01 100 chrIV:1150720-1151211 1.75e-05 [+2(1.01e-09)]_79 chrIV:1175741-1176227 9.04e-01 100 chrIV:1201501-1202019 1.61e-04 44_[-2(3.59e-08)]_35 chrIV:1236445-1238403 7.16e-01 100 chrIV:1256206-1257296 3.77e-01 100 chrIV:1300743-1301331 7.93e-01 100 chrIV:1305434-1305852 5.20e-07 41_[-2(2.45e-10)]_38 chrIV:1351954-1353108 1.61e-04 31_[+2(3.59e-08)]_48 chrIV:1355730-1356064 9.53e-01 100 chrIV:1359177-1360797 9.64e-01 100 chrIV:1401189-1403373 3.72e-02 100 chrIV:1440158-1443451 6.68e-01 100 chrIV:1449962-1451507 9.41e-01 100 chrIV:1461449-1461840 6.09e-02 100 chrIV:1488959-1489852 8.28e-01 100 chrIX:68258-68482 9.88e-01 100 chrIX:96801-97116 9.61e-01 100 chrIX:98526-100260 5.83e-01 100 chrIX:128938-129818 6.56e-02 40_[-2(8.66e-05)]_39 chrIX:174193-174585 6.47e-01 100 chrIX:174881-175487 9.96e-01 100 chrIX:183287-183707 1.31e-12 [+1(2.02e-10)]_19_[+2(1.01e-09)]_39 chrIX:197256-197727 9.82e-01 100 chrIX:210658-210982 6.37e-01 100 chrIX:248558-248941 4.65e-01 100 chrIX:254240-254545 3.03e-01 100 chrIX:255042-255880 6.09e-01 100 chrIX:256242-257138 8.73e-01 100 chrIX:257395-258239 3.66e-01 100 chrIX:299973-300473 2.21e-07 62_[+1(1.71e-10)]_17 chrIX:315583-318246 9.29e-01 100 chrIX:323659-324378 7.42e-01 100 chrIX:325746-326124 6.61e-02 54_[-3(4.63e-05)]_31 chrIX:336081-336622 3.97e-12 55_[+1(3.25e-09)]_2_[-3(1.08e-10)]_\ 7 chrIX:370124-370606 9.98e-01 100 chrIX:391486-392491 9.27e-03 15_[-2(8.89e-06)]_64 chrV:27539-29926 7.97e-01 100 chrV:53509-53980 7.55e-01 100 chrV:61060-62194 3.27e-01 100 chrV:78052-79419 4.95e-03 33_[-2(2.19e-06)]_46 chrV:85131-87106 3.52e-01 100 chrV:99906-100314 2.10e-03 77_[-2(1.33e-06)]_2 chrV:117179-118468 9.10e-02 100 chrV:122127-122534 8.55e-01 100 chrV:122748-123035 1.01e-01 100 chrV:130825-131420 5.57e-08 17_[+1(3.66e-09)]_17_[+2(4.62e-06)]_\ 24 chrV:135187-136079 4.90e-01 100 chrV:138444-140899 5.22e-01 100 chrV:176903-177528 9.69e-01 100 chrV:207355-208043 9.54e-01 100 chrV:249770-250725 9.88e-01 100 chrV:288132-289137 5.49e-01 100 chrV:305817-307460 1.37e-01 100 chrV:311754-312294 1.85e-06 56_[+1(2.02e-10)]_23 chrV:312471-313193 6.49e-01 100 chrV:322140-323052 9.71e-01 100 chrV:354671-355364 1.16e-06 9_[-1(1.03e-10)]_70 chrV:396193-397879 2.91e-01 100 chrV:422807-424334 9.57e-01 100 chrV:431034-431927 7.88e-01 100 chrV:434395-436345 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1.51e-05 70_[+1(1.18e-09)]_9 chrXVI:775637-776099 8.10e-01 100 chrXVI:794038-796173 7.54e-01 100 chrXVI:810580-810873 9.20e-09 4_[-2(2.67e-08)]_19_[-1(1.28e-07)]_\ 35 chrXVI:819332-820089 9.94e-01 100 chrXVI:856739-857154 1.78e-11 10_[-2(1.90e-09)]_18_[-1(1.23e-08)]_\ 30 chrXVI:860110-860678 8.14e-11 39_[-2(2.77e-07)]_16_[-1(7.19e-11)]_\ 3 chrXVI:879518-880554 8.84e-06 1_[+3(7.88e-09)]_84 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************