Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.052803 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.060009 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.07747 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.020868 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.077848 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background Finished invoke: name: bg status: 0 time: 0.015831 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 996.328091 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/seqs-shuffled Finished invoke: name: dreme status: 0 time: 40.304437 Invoking: centrimo -seqlen 564 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.206674 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.468667 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background -primary GGTTCGAYYCCCSBHKKGRKCRTTTTTTTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.473014 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background -primary BKTGGCCSAGTKGGTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.387405 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background -primary RAWGTGATARCCRYTACACTATAKSRSM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.302438 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background -primary SAAGAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.446788 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background -primary DACCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.467381 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background -primary GTTAKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.347406 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background -primary AAAAARTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.376487 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background -primary CCTTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.279928 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background -primary CGSGGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.24258 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background --motif GGTTCGAYYCCCSBHKKGRKCRTTTTTTTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa Finished invoke: name: fimo1 status: 0 time: 0.489764 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background --motif BKTGGCCSAGTKGGTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa Finished invoke: name: fimo2 status: 0 time: 0.475946 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background --motif RAWGTGATARCCRYTACACTATAKSRSM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa Finished invoke: name: fimo3 status: 0 time: 0.472777 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background --motif SAAGAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa Finished invoke: name: fimo4 status: 0 time: 0.336442 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background --motif DACCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa Finished invoke: name: fimo5 status: 0 time: 0.328947 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background --motif GTTAKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa Finished invoke: name: fimo6 status: 0 time: 0.32325 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background --motif AAAAARTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa Finished invoke: name: fimo7 status: 0 time: 0.384537 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background --motif CCTTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa Finished invoke: name: fimo8 status: 0 time: 0.566153 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/background --motif CGSGGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/RM11-1A--IES2.fa Finished invoke: name: fimo9 status: 0 time: 0.355932 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--IES2/summary.tsv Finished invoke: name: summary status: 0 time: 0.224043 Done