******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--FKH1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:301085-301627 1.0000 100 chrVIII:144508-146455 1.0000 100 chrXIV:631482-632111 1.0000 100 chrVI:220015-221510 1.0000 100 chrXI:55488-56189 1.0000 100 chrI:139005-139351 1.0000 100 chrIV:1010251-1010474 1.0000 100 chrXVI:842693-843111 1.0000 100 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1.0000 100 chrXII:679975-680252 1.0000 100 chrXV:710142-710602 1.0000 100 chrII:36268-36574 1.0000 100 chrXV:176726-177048 1.0000 100 chrXV:184759-185216 1.0000 100 chrII:478949-479470 1.0000 100 chrXVI:640576-643612 1.0000 100 chrVIII:281145-281479 1.0000 100 chrXIV:725871-726349 1.0000 100 chrXII:827229-827587 1.0000 100 chrIII:90855-91114 1.0000 100 chrXII:809701-815817 1.0000 100 chrX:466081-466181 1.0000 100 chrXIV:619699-620051 1.0000 100 chrVIII:119644-122039 1.0000 100 chrIII:95941-96324 1.0000 100 chrXV:252823-253703 1.0000 100 chrVIII:55614-56320 1.0000 100 chrVIII:142287-143251 1.0000 100 chrXI:75025-75220 1.0000 100 chrXII:506120-507475 1.0000 100 chrXII:340866-341746 1.0000 100 chrII:197251-197815 1.0000 100 chrXIII:122915-124238 1.0000 100 chrX:172709-172809 1.0000 100 chrXIV:575113-577467 1.0000 100 chrIV:129309-130939 1.0000 100 chrXV:1036464-1036838 1.0000 100 chrXV:228168-228522 1.0000 100 chrXII:1010231-1010563 1.0000 100 chrX:683677-683777 1.0000 100 chrVI:157899-158361 1.0000 100 chrIV:221125-222310 1.0000 100 chrXIII:115537-118995 1.0000 100 chrVII:561253-561713 1.0000 100 chrXIV:662888-664282 1.0000 100 chrX:523849-523949 1.0000 100 chrVIII:289573-289863 1.0000 100 chrIV:835862-837967 1.0000 100 chrXII:406835-407478 1.0000 100 chrXIV:569496-570044 1.0000 100 chrXVI:153664-154826 1.0000 100 chrXV:79733-80037 1.0000 100 chrV:487089-487581 1.0000 100 chrIV:525384-527335 1.0000 100 chrXVI:927693-928029 1.0000 100 chrX:612778-612878 1.0000 100 chrXIII:306128-306304 1.0000 100 chrII:161572-161827 1.0000 100 chrVIII:5333-5694 1.0000 100 chrVII:876211-878398 1.0000 100 chrXII:881690-881903 1.0000 100 chrVI:108060-108329 1.0000 100 chrXI:168733-168951 1.0000 100 chrVII:412045-412573 1.0000 100 chrIII:292671-293058 1.0000 100 chrXII:1028804-1030419 1.0000 100 chrV:550933-551529 1.0000 100 chrXII:459630-460742 1.0000 100 chrVIII:354196-354773 1.0000 100 chrV:492151-492557 1.0000 100 chrVII:205328-205895 1.0000 100 chrXI:260226-260715 1.0000 100 chrXI:363917-365271 1.0000 100 chrX:408827-408927 1.0000 100 chrXII:426951-427436 1.0000 100 chrIV:915088-916260 1.0000 100 chrXI:431764-433186 1.0000 100 chrXV:505043-505351 1.0000 100 chrXIII:696153-697633 1.0000 100 chrV:363620-364677 1.0000 100 chrXV:571762-572388 1.0000 100 chrIV:1328793-1330337 1.0000 100 chrXV:287152-288829 1.0000 100 chrXV:268612-268868 1.0000 100 chrIV:619713-620168 1.0000 100 chrIX:333406-333620 1.0000 100 chrXV:854024-854967 1.0000 100 chrVII:84375-84702 1.0000 100 chrVII:31442-31956 1.0000 100 chrXII:837606-839428 1.0000 100 chrXI:21378-21761 1.0000 100 chrX:608183-608283 1.0000 100 chrVII:554675-555523 1.0000 100 chrXIV:339973-340509 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--FKH1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--FKH1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--FKH1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.311 C 0.189 G 0.189 T 0.311 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--FKH1/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF GGTTCRATTCCCVBHKKGRGMRWWTTTTT MEME-1 width = 29 sites = 34 llr = 658 E-value = 9.6e-090 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTTCRATTCCCVBHKKGRGMRWWTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2::1:4a2::::2:31113234331:::1 pos.-specific C ::::9::23a76324212126:11::21: probability G 8a:::6:2:::244:54665:51:::::: matrix T ::a91::47:32133331111:468a888 bits 2.4 * * 2.2 * * 1.9 * * * 1.7 ** * * * Relative 1.4 ***** * * * Entropy 1.2 ******* ** * (27.9 bits) 1.0 ******* *** ** ** 0.7 ******* **** * ** ***** 0.5 ******* ******** ***** ****** 0.2 ******* ************** ****** 0.0 ----------------------------- Multilevel GGTTCGATTCCCGGCGGGGGCGTTTTTTT consensus A A CC TGCTTTTCA AAAA sequence ACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCRATTCCCVBHKKGRGMRWWTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIX:336103-336618 - 32 1.31e-12 GCCAGATCGG GGTTCAATTCCCCGTCGCGGAGATTTTTT TACCATAACT chrXI:513036-513582 - 66 1.31e-12 GATCGG GGTTCAATTCCCCGTCGCGGAGATTTTTT ATTTTGCTTT chrIV:619713-620168 - 72 2.37e-12 . GGTTCAAGTCCTGGCGGGGAAGATTTTTT ATACATTTTT chrXII:374217-374651 + 22 2.37e-12 GAAGATTCCA GGTTCAAGTCCTGGCGGGGAAGATTTTTT TGCTCCGACA chrXII:426951-427436 + 39 3.63e-12 GCCAGATCGG GGTTCAATTCCCCGTCGCGGAGAATTTTT TTAAGCTTCT chrIV:568726-569287 + 58 3.63e-12 GCCAGATCGG GGTTCAATTCCCCGTCGCGGAGAATTTTT TTTAATTGAT chrX:531624-531724 + 16 4.79e-12 TTGGGCCCCC GGTTCGATTCCGGGCTTGCGCAGTTTCTT TTCTTTTTTT chrXI:490810-491205 + 62 6.30e-12 GAAGATTCCA GGTTCAAGTCCTGGCGGGGAAGAATTTTT TTACTTTTAT chrII:197251-197815 + 63 1.79e-11 GGGGATCAGC GGTTCGATCCCGCTAGAGACCATTTTTTT GCAATTCAA chrXVI:860139-860706 + 56 3.32e-11 TTGGGCCCCC GGTTCGATTCCGGGCTTGCGCAGATTTTA TTTTTTGCTC chrXIII:747701-748119 - 25 5.99e-11 GAAGATTATG GGTTCGACCCCCATCGTGAGTGTTTTTTA GTATTGTTTT chrXI:162222-162709 - 65 5.99e-11 GATTATG GGTTCGACCCCCATCGTGAGTGTTTTTTA CACCAGCAGT chrXII:1051951-1052201 - 38 1.47e-10 GGGGATCAGC GGTTCGATCCCGCTAGAGACCATTATTTT TTTTACTTTA chrXIII:572684-573125 - 22 1.82e-10 GAAGGTCGAG AGTTCGAACCTCCCCTGGAGCACATTTTT TTTCAAAACT chrII:266221-266657 + 40 1.82e-10 GGAGATCATC GGTTCAAATCCGATTGGAAGCATTTTTTT GAATACTGAA chrXII:167734-168238 - 1 3.07e-10 TGCCCGCGCA GGTTCGAGTCCTGCAGTTGTCGTTATTTT chrV:492151-492557 - 41 3.76e-10 GAAGATTCCA GGTTCAAGTCCTGGCGGGGAAGGATTATT TTTCTTTTAA chrV:176947-177416 + 18 4.16e-10 TGGAGACCGG GGTTCGACTCCCCGTATCGGAGTACTTTT TTGATGGCTA chrXIII:131628-132022 - 43 4.60e-10 GAAGATTATG GGTTCGACCCCCATCGTGAGTGCTTTGTT TCTTCTTTTT chrV:434365-434758 - 23 5.60e-10 ATGAAACCCT GGTTCGATTCTAGGAGATGGCATTTTCTT TTTTACCTGT chrVI:191258-191748 - 53 6.18e-10 TACCTGCGCA GGTTCGAATCCTGTCTGTGACGCATTTCT TTTTTAAATT chrVI:101189-101696 + 65 6.18e-10 AGAGGCCCTG GGTTCAATTCCCAGCTCGCCCCCTTTTTT TTGCATA chrV:487089-487581 - 39 1.09e-09 TGGAGACCGG GGTTCGACTCCCCGTATCGGAGTATTCGT TATATTTTTT chrVII:730980-731433 + 33 2.24e-09 CAAGATCGTG AGTTCAACCCTCACTGGGGTCGTTTTTTG CTTGAAATGA chrXIII:320998-321294 - 44 2.24e-09 AGAGGTCTCC GGTTCGATTCCGGACTCGTCCATTTTTTA TTTTTTTGGC chrVII:1004081-1004411 + 70 6.11e-09 AAAGGTCGTT AGTTCAATTCTGACAGGTGGCAGTTTCCT TT chrVI:226480-226901 - 41 8.37e-09 TAAGGTTAGG GGTTCGAGCCCCCTACAGGGCTTATCTCT TTTTTTCTCT chrXIII:837762-838213 + 58 1.23e-08 TGAGATCGGG CGTTCGACTCGCCCCCGGGAGATATTTTT TTACTTTTGA chrXII:92417-92712 + 50 2.52e-08 GTGGTCTAGT GGTATGATTCTCGCTTTGGGCGACTTCCT GAATAAACAG chrI:139005-139351 + 40 2.52e-08 GTGGTCTAGT GGTATGATTCTCGCTTTGGGCGACTTCCT GAATAAACAG chrVII:205328-205895 + 52 4.32e-08 AAGATGCAAG AGTTCGAATCTCTTAGCAACCATTATTTT TTATCTTTTT chrIII:90855-91114 + 17 4.32e-08 AAGATGCAAG AGTTCGAATCTCTTAGCAACCATTATTTT TTTCCTCAAC chrVII:412045-412573 - 28 4.92e-08 GAACGTCCCC AGTTCGATCCTGGGCGAAATCAAGTTTTA TTTTTTTCTA chrXIV:725871-726349 - 67 7.65e-08 GCGCG AGTTCGAACCTCGCATCCTTCAGTATTTT TTTTTATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCRATTCCCVBHKKGRGMRWWTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIX:336103-336618 1.3e-12 31_[-1]_40 chrXI:513036-513582 1.3e-12 65_[-1]_6 chrIV:619713-620168 2.4e-12 71_[-1] chrXII:374217-374651 2.4e-12 21_[+1]_50 chrXII:426951-427436 3.6e-12 38_[+1]_33 chrIV:568726-569287 3.6e-12 57_[+1]_14 chrX:531624-531724 4.8e-12 15_[+1]_56 chrXI:490810-491205 6.3e-12 61_[+1]_10 chrII:197251-197815 1.8e-11 62_[+1]_9 chrXVI:860139-860706 3.3e-11 55_[+1]_16 chrXIII:747701-748119 6e-11 24_[-1]_47 chrXI:162222-162709 6e-11 64_[-1]_7 chrXII:1051951-1052201 1.5e-10 37_[-1]_34 chrXIII:572684-573125 1.8e-10 21_[-1]_50 chrII:266221-266657 1.8e-10 39_[+1]_32 chrXII:167734-168238 3.1e-10 [-1]_71 chrV:492151-492557 3.8e-10 40_[-1]_31 chrV:176947-177416 4.2e-10 17_[+1]_54 chrXIII:131628-132022 4.6e-10 42_[-1]_29 chrV:434365-434758 5.6e-10 22_[-1]_49 chrVI:191258-191748 6.2e-10 52_[-1]_19 chrVI:101189-101696 6.2e-10 64_[+1]_7 chrV:487089-487581 1.1e-09 38_[-1]_33 chrVII:730980-731433 2.2e-09 32_[+1]_39 chrXIII:320998-321294 2.2e-09 43_[-1]_28 chrVII:1004081-1004411 6.1e-09 69_[+1]_2 chrVI:226480-226901 8.4e-09 40_[-1]_31 chrXIII:837762-838213 1.2e-08 57_[+1]_14 chrXII:92417-92712 2.5e-08 49_[+1]_22 chrI:139005-139351 2.5e-08 39_[+1]_32 chrVII:205328-205895 4.3e-08 51_[+1]_20 chrIII:90855-91114 4.3e-08 16_[+1]_55 chrVII:412045-412573 4.9e-08 27_[-1]_44 chrXIV:725871-726349 7.7e-08 66_[-1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCRATTCCCVBHKKGRGMRWWTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTTCRATTCCCVBHKKGRGMRWWTTTTT width=29 seqs=34 chrIX:336103-336618 ( 32) GGTTCAATTCCCCGTCGCGGAGATTTTTT 1 chrXI:513036-513582 ( 66) GGTTCAATTCCCCGTCGCGGAGATTTTTT 1 chrIV:619713-620168 ( 72) GGTTCAAGTCCTGGCGGGGAAGATTTTTT 1 chrXII:374217-374651 ( 22) GGTTCAAGTCCTGGCGGGGAAGATTTTTT 1 chrXII:426951-427436 ( 39) GGTTCAATTCCCCGTCGCGGAGAATTTTT 1 chrIV:568726-569287 ( 58) GGTTCAATTCCCCGTCGCGGAGAATTTTT 1 chrX:531624-531724 ( 16) GGTTCGATTCCGGGCTTGCGCAGTTTCTT 1 chrXI:490810-491205 ( 62) GGTTCAAGTCCTGGCGGGGAAGAATTTTT 1 chrII:197251-197815 ( 63) GGTTCGATCCCGCTAGAGACCATTTTTTT 1 chrXVI:860139-860706 ( 56) GGTTCGATTCCGGGCTTGCGCAGATTTTA 1 chrXIII:747701-748119 ( 25) GGTTCGACCCCCATCGTGAGTGTTTTTTA 1 chrXI:162222-162709 ( 65) GGTTCGACCCCCATCGTGAGTGTTTTTTA 1 chrXII:1051951-1052201 ( 38) GGTTCGATCCCGCTAGAGACCATTATTTT 1 chrXIII:572684-573125 ( 22) AGTTCGAACCTCCCCTGGAGCACATTTTT 1 chrII:266221-266657 ( 40) GGTTCAAATCCGATTGGAAGCATTTTTTT 1 chrXII:167734-168238 ( 1) GGTTCGAGTCCTGCAGTTGTCGTTATTTT 1 chrV:492151-492557 ( 41) GGTTCAAGTCCTGGCGGGGAAGGATTATT 1 chrV:176947-177416 ( 18) GGTTCGACTCCCCGTATCGGAGTACTTTT 1 chrXIII:131628-132022 ( 43) GGTTCGACCCCCATCGTGAGTGCTTTGTT 1 chrV:434365-434758 ( 23) GGTTCGATTCTAGGAGATGGCATTTTCTT 1 chrVI:191258-191748 ( 53) GGTTCGAATCCTGTCTGTGACGCATTTCT 1 chrVI:101189-101696 ( 65) GGTTCAATTCCCAGCTCGCCCCCTTTTTT 1 chrV:487089-487581 ( 39) GGTTCGACTCCCCGTATCGGAGTATTCGT 1 chrVII:730980-731433 ( 33) AGTTCAACCCTCACTGGGGTCGTTTTTTG 1 chrXIII:320998-321294 ( 44) GGTTCGATTCCGGACTCGTCCATTTTTTA 1 chrVII:1004081-1004411 ( 70) AGTTCAATTCTGACAGGTGGCAGTTTCCT 1 chrVI:226480-226901 ( 41) GGTTCGAGCCCCCTACAGGGCTTATCTCT 1 chrXIII:837762-838213 ( 58) CGTTCGACTCGCCCCCGGGAGATATTTTT 1 chrXII:92417-92712 ( 50) GGTATGATTCTCGCTTTGGGCGACTTCCT 1 chrI:139005-139351 ( 40) GGTATGATTCTCGCTTTGGGCGACTTCCT 1 chrVII:205328-205895 ( 52) AGTTCGAATCTCTTAGCAACCATTATTTT 1 chrIII:90855-91114 ( 17) AGTTCGAATCTCTTAGCAACCATTATTTT 1 chrVII:412045-412573 ( 28) AGTTCGATCCTGGGCGAAATCAAGTTTTA 1 chrXIV:725871-726349 ( 67) AGTTCGAACCTCGCATCCTTCAGTATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCRATTCCCVBHKKGRGMRWWTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.3797 E= 9.6e-090 -59 -269 201 -1173 -1173 -1173 240 -1173 -1173 -1173 -1173 169 -240 -1173 -1173 160 -1173 231 -1173 -240 19 -1173 177 -1173 169 -1173 -1173 -1173 -81 12 -10 51 -1173 63 -1173 119 -1173 240 -1173 -1173 -1173 183 -269 -8 -340 156 31 -81 -59 77 112 -240 -340 31 122 -8 -23 122 -1173 -8 -240 -10 140 -23 -108 -37 112 -8 -140 12 156 -140 -8 -110 156 -240 -81 -10 148 -140 -8 163 -269 -181 41 -269 148 -340 -8 -69 -37 51 6 -169 -269 92 -108 -269 -1173 141 -1173 -269 -1173 164 -340 -10 -269 130 -1173 -37 -269 141 -108 -1173 -269 141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCRATTCCCVBHKKGRGMRWWTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 34 E= 9.6e-090 0.205882 0.029412 0.764706 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.058824 0.000000 0.000000 0.941176 0.000000 0.941176 0.000000 0.058824 0.352941 0.000000 0.647059 0.000000 1.000000 0.000000 0.000000 0.000000 0.176471 0.205882 0.176471 0.441176 0.000000 0.294118 0.000000 0.705882 0.000000 1.000000 0.000000 0.000000 0.000000 0.676471 0.029412 0.294118 0.029412 0.558824 0.235294 0.176471 0.205882 0.323529 0.411765 0.058824 0.029412 0.235294 0.441176 0.294118 0.264706 0.441176 0.000000 0.294118 0.058824 0.176471 0.500000 0.264706 0.147059 0.147059 0.411765 0.294118 0.117647 0.205882 0.558824 0.117647 0.294118 0.088235 0.558824 0.058824 0.176471 0.176471 0.529412 0.117647 0.294118 0.588235 0.029412 0.088235 0.411765 0.029412 0.529412 0.029412 0.294118 0.117647 0.147059 0.441176 0.323529 0.058824 0.029412 0.588235 0.147059 0.029412 0.000000 0.823529 0.000000 0.029412 0.000000 0.970588 0.029412 0.176471 0.029412 0.764706 0.000000 0.147059 0.029412 0.823529 0.147059 0.000000 0.029412 0.823529 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCRATTCCCVBHKKGRGMRWWTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- [GA]GTTC[GA]A[TC][TC]C[CT][CG][GCA][GTC][CTA][GT][GT][GC][GA]G[CA][GA][TA][TA]TTTTT -------------------------------------------------------------------------------- Time 356.32 secs. ******************************************************************************** ******************************************************************************** MOTIF TRAYCTTCDGATTADKAGYCHGACGCSYT MEME-2 width = 29 sites = 21 llr = 429 E-value = 1.1e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRAYCTTCDGATTADKAGYCHGACGCSYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :6a::::23:82:7418::14:6:::::: pos.-specific C 2::3822612:::1112:5621:9:a43: probability G 14::22:1272::234:a:1162:a:512 matrix T 6::7:6814::8a:23::523221::168 bits 2.4 * ** 2.2 * ** 1.9 * ** 1.7 * * * * *** Relative 1.4 * * * * *** Entropy 1.2 * * * * * * *** (29.5 bits) 1.0 **** * **** ** **** * 0.7 ******* **** *** * ****** 0.5 ******** ***** **** ******** 0.2 ******** *********** ******** 0.0 ----------------------------- Multilevel TAATCTTCTGATTAAGAGCCAGACGCGTT consensus CG C ACG GT T T CCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAYCTTCDGATTADKAGYCHGACGCSYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIII:747701-748119 + 56 8.84e-14 GTCGAACCCA TAATCTTCTGATTAGAAGTCAGACGCGTT GCCATTACGC chrVI:226480-226901 + 72 2.82e-12 CTCGAACCCC TAACCTTATGATTAAGAGTCATACGCGCT chrIV:1201555-1201991 - 47 2.82e-12 CTCGAACCCC TAACCTTATGATTAAGAGTCATACGCGCT ACCGATTGCG chrIX:300098-300462 + 22 2.82e-12 CTCGAACCCC TAACCTTATGATTAAGAGTCATACGCGCT ACCGATTGCG chrX:414819-414919 - 63 2.82e-12 TCGAACCCC TAACCTTATGATTAAGAGTCATACGCGCT ACCGATTGCG chrV:492151-492557 + 72 1.00e-11 CTTGAACCTG GAATCTTCTGGTTCGTAGCCAGACGCCGT chrXI:490810-491205 - 31 1.00e-11 CTTGAACCTG GAATCTTCTGGTTCGTAGCCAGACGCCGT GACCATTGGG chrXV:228168-228522 - 57 3.50e-11 GTTGAACTCA CGATCTTGCGATTAACAGTCGCACGCCTT AACCAACTTG chrVII:730980-731433 - 2 3.50e-11 GTTGAACTCA CGATCTTGCGATTAACAGTCGCACGCCTT A chrXI:74432-74872 - 43 3.50e-11 GTTGAACTCA CGATCTTGCGATTAACAGTCGCACGCCTT AACCAACTTG chrXIII:572684-573125 + 53 1.07e-10 TTCGAACTCT CGACCTTCAGATTATGAGACTGACGCTCT TCCTACTGAG chrII:266221-266657 - 9 1.45e-10 TTTGAACCGA TGATCTCCACATTACTAGTGTGGCGCCTT ACCAACTT chrXII:426951-427436 + 1 9.70e-10 . TAATGGTCAGAATGGGCGCTTGTCGCGTG CCAGATCGGG chrIV:568726-569287 + 20 9.70e-10 CGTGATAGTT TAATGGTCAGAATGGGCGCTTGTCGCGTG CCAGATCGGG chrIX:336103-336618 - 70 9.70e-10 TT TAATGGTCAGAATGGGCGCTTGTCGCGTG CCAGATCGGG chrVII:531415-531832 + 49 9.70e-10 CGTGATAGTT TAATGGTCAGAATGGGCGCTTGTCGCGTG CCAGATCGGG chrII:197251-197815 - 32 2.07e-09 ATCGAACCGC TGATCCCCGCGTTATTAGCACGGTGCCTT AACCAACTGG chrIX:183340-183671 + 9 2.07e-09 CGAACCGC TGATCCCCGCGTTATTAGCACGGTGCCTT AACCAACTGG chrXII:1051951-1052201 + 69 2.07e-09 ATCGAACCGC TGATCCCCGCGTTATTAGCACGGTGCCTT AAC chrIV:1273811-1274341 - 10 2.32e-08 CTTGGCAAGA GAACCCTTTTATTTATGGCCAGACGCGCG TCGCAAAAA chrVII:1004081-1004411 - 39 3.24e-08 ATTGAACTAA CGACCTTTGCATTACAAGTGCAACGCTCT ACCACTAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAYCTTCDGATTADKAGYCHGACGCSYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:747701-748119 8.8e-14 55_[+2]_16 chrVI:226480-226901 2.8e-12 71_[+2] chrIV:1201555-1201991 2.8e-12 46_[-2]_25 chrIX:300098-300462 2.8e-12 21_[+2]_50 chrX:414819-414919 2.8e-12 62_[-2]_9 chrV:492151-492557 1e-11 71_[+2] chrXI:490810-491205 1e-11 30_[-2]_41 chrXV:228168-228522 3.5e-11 56_[-2]_15 chrVII:730980-731433 3.5e-11 1_[-2]_70 chrXI:74432-74872 3.5e-11 42_[-2]_29 chrXIII:572684-573125 1.1e-10 52_[+2]_19 chrII:266221-266657 1.5e-10 8_[-2]_63 chrXII:426951-427436 9.7e-10 [+2]_71 chrIV:568726-569287 9.7e-10 19_[+2]_52 chrIX:336103-336618 9.7e-10 69_[-2]_2 chrVII:531415-531832 9.7e-10 48_[+2]_23 chrII:197251-197815 2.1e-09 31_[-2]_40 chrIX:183340-183671 2.1e-09 8_[+2]_63 chrXII:1051951-1052201 2.1e-09 68_[+2]_3 chrIV:1273811-1274341 2.3e-08 9_[-2]_62 chrVII:1004081-1004411 3.2e-08 38_[-2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAYCTTCDGATTADKAGYCHGACGCSYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRAYCTTCDGATTADKAGYCHGACGCSYT width=29 seqs=21 chrXIII:747701-748119 ( 56) TAATCTTCTGATTAGAAGTCAGACGCGTT 1 chrVI:226480-226901 ( 72) TAACCTTATGATTAAGAGTCATACGCGCT 1 chrIV:1201555-1201991 ( 47) TAACCTTATGATTAAGAGTCATACGCGCT 1 chrIX:300098-300462 ( 22) TAACCTTATGATTAAGAGTCATACGCGCT 1 chrX:414819-414919 ( 63) TAACCTTATGATTAAGAGTCATACGCGCT 1 chrV:492151-492557 ( 72) GAATCTTCTGGTTCGTAGCCAGACGCCGT 1 chrXI:490810-491205 ( 31) GAATCTTCTGGTTCGTAGCCAGACGCCGT 1 chrXV:228168-228522 ( 57) CGATCTTGCGATTAACAGTCGCACGCCTT 1 chrVII:730980-731433 ( 2) CGATCTTGCGATTAACAGTCGCACGCCTT 1 chrXI:74432-74872 ( 43) CGATCTTGCGATTAACAGTCGCACGCCTT 1 chrXIII:572684-573125 ( 53) CGACCTTCAGATTATGAGACTGACGCTCT 1 chrII:266221-266657 ( 9) TGATCTCCACATTACTAGTGTGGCGCCTT 1 chrXII:426951-427436 ( 1) TAATGGTCAGAATGGGCGCTTGTCGCGTG 1 chrIV:568726-569287 ( 20) TAATGGTCAGAATGGGCGCTTGTCGCGTG 1 chrIX:336103-336618 ( 70) TAATGGTCAGAATGGGCGCTTGTCGCGTG 1 chrVII:531415-531832 ( 49) TAATGGTCAGAATGGGCGCTTGTCGCGTG 1 chrII:197251-197815 ( 32) TGATCCCCGCGTTATTAGCACGGTGCCTT 1 chrIX:183340-183671 ( 9) TGATCCCCGCGTTATTAGCACGGTGCCTT 1 chrXII:1051951-1052201 ( 69) TGATCCCCGCGTTATTAGCACGGTGCCTT 1 chrIV:1273811-1274341 ( 10) GAACCCTTTTATTTATGGCCAGACGCGCG 1 chrVII:1004081-1004411 ( 39) CGACCTTTGCATTACAAGTGCAACGCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAYCTTCDGATTADKAGYCHGACGCSYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.5005 E= 1.1e-043 -1104 33 -41 100 88 -1104 118 -1104 169 -1104 -1104 -1104 -1104 81 -1104 110 -1104 209 1 -1104 -1104 1 1 100 -1104 1 -1104 138 -70 159 -41 -170 -12 -41 1 30 -1104 33 191 -270 130 -1104 33 -1104 -70 -1104 -1104 138 -1104 -1104 -1104 169 110 -99 1 -270 30 -99 81 -70 -170 -41 118 10 130 1 -199 -1104 -1104 -1104 240 -1104 -270 133 -1104 62 -112 159 -99 -70 30 1 -41 -12 -270 -41 171 -70 100 -1104 1 -70 -1104 218 -1104 -112 -1104 -1104 240 -1104 -1104 240 -1104 -1104 -1104 118 133 -170 -1104 81 -99 88 -1104 -1104 33 130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAYCTTCDGATTADKAGYCHGACGCSYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 21 E= 1.1e-043 0.000000 0.238095 0.142857 0.619048 0.571429 0.000000 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.809524 0.190476 0.000000 0.000000 0.190476 0.190476 0.619048 0.000000 0.190476 0.000000 0.809524 0.190476 0.571429 0.142857 0.095238 0.285714 0.142857 0.190476 0.380952 0.000000 0.238095 0.714286 0.047619 0.761905 0.000000 0.238095 0.000000 0.190476 0.000000 0.000000 0.809524 0.000000 0.000000 0.000000 1.000000 0.666667 0.095238 0.190476 0.047619 0.380952 0.095238 0.333333 0.190476 0.095238 0.142857 0.428571 0.333333 0.761905 0.190476 0.047619 0.000000 0.000000 0.000000 1.000000 0.000000 0.047619 0.476190 0.000000 0.476190 0.142857 0.571429 0.095238 0.190476 0.380952 0.190476 0.142857 0.285714 0.047619 0.142857 0.619048 0.190476 0.619048 0.000000 0.190476 0.190476 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.476190 0.095238 0.000000 0.333333 0.095238 0.571429 0.000000 0.000000 0.238095 0.761905 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAYCTTCDGATTADKAGYCHGACGCSYT MEME-2 regular expression -------------------------------------------------------------------------------- [TC][AG]A[TC]CTTC[TA][GC][AG]TTA[AG][GT]AG[CT]C[AT]GACGC[GC][TC][TG] -------------------------------------------------------------------------------- Time 679.68 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYTTNHBCTKTTTYTTTYTTTKTTTSTTT MEME-3 width = 30 sites = 97 llr = 1017 E-value = 4.0e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYTTNHBCTKTTTYTTTYTTTKTTTSTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3::1232:2221:1::1112:1::2111: pos.-specific C 314:13226112124112411:122:5212 probability G 11112214123:11112212123112312: matrix T 766863433555774865466757872678 bits 2.4 2.2 1.9 1.7 Relative 1.4 Entropy 1.2 (15.1 bits) 1.0 * * * * * 0.7 * ** * ** * ** * 0.5 * *** * *** ** * * **** ** 0.2 ***** *********************** 0.0 ------------------------------ Multilevel TTTTTTTGCTTTTTTTTTCTTTTTTTCTTT consensus CAC GCATT GA C GCT GGC G C sequence GC C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTNHBCTKTTTYTTTYTTTKTTTSTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:771923-772209 + 26 5.76e-11 CATGTAGCAC TATTTCAGCCGTATTTTTCTTTTTTTCTTT CGCACCGTCT chrV:349643-350019 + 4 1.78e-09 CGT CATTTCCGCTATTTCTGTCCTGGTTTGTTT ACAGTACGCG chrIV:1239381-1240199 - 16 1.78e-09 CATCAGATTC TTCCTTAGCTTCTTCTTCCTTTTCTTCTTC AGCAGCATCA chrXV:1036464-1036838 + 1 1.79e-08 . TTCTTGTTTTGTTGTTTTTTTTTTTTGCGT CCCGTTTCTT chrVII:440475-443949 - 23 1.79e-08 CTTCTTCTAC TTCTTCTTCTACTTCTTCCTCTACTTCTTC TTCTACTTCT chrXIII:145711-146230 + 69 2.91e-08 ATTTATATTA TTTTTTCCCTTCTGGGTTCTTTTCTTCCTT TT chrXI:261047-262109 + 65 3.41e-08 ACTCTAGTTC CTCTTCATCTGCTTCTGCTTCGTCTGCTTC CGCATC chrIII:276495-276839 - 42 4.64e-08 CACTTTCTCG TTTTTGAATTGTTCCTTTGTTTATTTGTTT ACTTTTAAAT chrIX:77579-78267 - 32 4.64e-08 GTATTCCAAT TATTTCTACCATTTTTGGTGTTGTTTGTTT ATTTTAGGAA chrV:306262-307919 - 68 4.64e-08 TCT TCTTGTCTCTGTTCTTCTTTTGCTTTCTTT GTTGTCTGGA chrVIII:206088-206531 + 22 5.41e-08 TGCATTTTTT CATTTTTGCATATTCTCGCATGTTTTCTTT CTTTTTCTCT chrXII:150073-151920 + 19 5.41e-08 ATCCTGTTTT TTTTTCATCATTCTCTTTCTTTCTTATGTT AACCTCGTAC chrVII:677905-678460 - 38 5.41e-08 ATCTGACATT TTTTCCCGCTTATTTTTGCGATTTTTTTTT TTGGTAGGAT chrI:69888-71012 - 21 9.80e-08 GACAGACCCT CTTTTTTGCTGTTGCTTTATTTTTTATGTT TAGAAACAAA chrIV:519679-520124 + 47 1.13e-07 TTCCAAGTAA TGTTTTTTTTTTTTTTTTTTTTTTTAGCTC CTCTCACAAA chrXII:561704-562038 - 32 1.50e-07 ATCTTTCTGA TGTTTCCATTGTTTTTGTTTTTGTTTCAGT GTTTACAAAG chrIV:386255-388420 - 26 2.28e-07 GAAGAATGAC CACTTCTCCTTTTCTTTTCCATTTCTTTTC TTCCACACTC chrVII:695447-697556 + 24 2.61e-07 GTAAGTACGA TTCTCCTGTTGCTTCTTTGTTTTCTGCATT TGTTTTTTAC chrXIII:306128-306304 - 1 2.99e-07 TTTCCCGCAT GTTGTCCGGTTTTTCTTTCTTTTGTTGCTT chrXV:779845-781037 + 67 2.99e-07 AAAAATTTTG CTTTGCCGTTGCATTTGTAGTTTTTTCCTT TGGA chrXVI:842693-843111 - 3 4.43e-07 GCCAAATTGC TTTTTTATCATATTTTGTGCTTGTGTGTTT AT chrXV:774810-775892 + 3 5.72e-07 TG CCTTTTTTCTTTCTCTGCCTGGTTTAGTTT TATTTACTAC chrII:477144-477809 + 56 5.72e-07 GTGTCGCTCC TTCTAGTGCTATTTCTGGCTTTTCCTATTT TTTTTTTTCC chrVIII:17170-17457 - 28 5.72e-07 TTTTTGCCTT TCTTTCATCATATTTTTTCCTTGTTTGTAT GAAGTGCATA chrVIII:354196-354773 + 37 8.32e-07 TTTACAATGG TTTGGTTCCTGTATCTTGTTTATTTTGTTC AAATGGCAAA chrXV:405502-405762 - 11 8.32e-07 GAATGTGATT TACTTATTCTATTTGGTGCTTGTTTTCATT TGATAAAGGA chrX:58776-58876 - 50 8.32e-07 ATATATTTGA TTTTTCAGCAATTAATTTTTTTTTTTTTTT TTTTTTCACG chrX:636564-636664 - 27 9.40e-07 ATTCTCGGTT CTTTCTACTCTAATTTTTTTTTTTTTGTTT ATTGGCTTCC chrXV:287152-288829 + 33 1.20e-06 AAGTTCAATT TATTTTTGTAGAATATTTTTTTTTCTCTTC TCTAGTACTC chrXIII:651026-652992 - 15 1.20e-06 TGTGTGAAAG TATTGGTGGTTTTTTTTTTGGTGTTATTTT TTCCTAAGTT chrXIII:897770-898228 - 12 1.20e-06 GTCTTGTTTA TTCTTAAAGTATTTTTTTTTATGTTTGGTT CTTGTTATTG chrII:486701-487029 - 6 1.20e-06 CAGAGAAGTC CTCTTCTTCGCTTCTTCGCTTTTGGTCTTT CTGAA chrXVI:640576-643612 + 4 1.52e-06 TGG TTCGTAGGTTGTTCTGTCTTTGTTTTCGTT AGGTAAGAAC chrXIII:225811-227251 - 37 1.52e-06 AAGCAGAGAC TTCTGGGACGTATTGGTCCTTTCTTTCTCT TTCTTCTTCT chrVI:53103-56059 - 53 1.70e-06 CGAGAGATTT CTCTTTTACCTTTTTTTACTATTTTTCACT CTCCCATAAC chrX:612778-612878 + 36 1.91e-06 GAAGTTCGTG TTCGAGATCTTCTTCCTTCTTTTTCGCTGT CGACGATAGA chrXVI:876000-876162 + 45 2.14e-06 TCATTGTATG TACGTATGCCTTTTTTTGTTATTTTAGCTC TAACTATAGC chrXII:604579-605604 + 15 2.14e-06 TTGTTTGCTT TTTTTTATCACTTTTTCCCGTATCTTGTTT CATTTGGAAG chrIV:1012803-1013751 - 11 2.68e-06 AACTTCTCAT CTTTTTTGCCTTTTATCATTTTTGTACTTT TATCTTCGCT chrXIV:662888-664282 + 61 2.99e-06 CACAAGAACC TACTCTCTCTCTCTCTTTCTCTCTCTCTCT CCCTCTTCGC chrXI:21378-21761 + 70 3.34e-06 CAATTTACTC CACTAGACCGGCGTGTTTCTCTTTTTCCTT T chrVII:84375-84702 + 29 3.34e-06 CTTAGCTAGC CGTGTTTTTAGTTTTTGTTTTGTTTATTTT ACCTGTATTA chrXIII:322703-323345 + 52 3.34e-06 CAGTTATTGA TCCTGGCACTGTTGTTGTTTAGTTCTGTGT TTGCCATTTT chrVIII:487476-488229 + 54 3.34e-06 CAACTTCACC TTCTTCGTCATCTTCTTCTGCTGCGGCGTT GACACTGCCT chrVII:122060-123153 - 6 3.34e-06 GGTTTCATAC TTTTTACCTTGATCCTTCCACTGTTTTTCC CTGTG chrV:512782-513073 - 38 3.34e-06 ATGTGAATTC TTCTGCATCTTCATGTTTATTTTTGGGTGT TTCATCATTG chrVIII:345584-345895 - 47 3.72e-06 TAAAACTGTG TATTTCTTTGTTCTTTGCCGTTGTTTACGT TAGTAAGAAA chrXVI:520565-520869 + 62 3.72e-06 TGATTACACT TTGTTTACCTTATTTTTTTATTATTTATTT TTCTAAAAA chrX:75819-75919 - 23 4.15e-06 TTCATCTTGG TTCTTCTCCAGTTTCTTCTCTTAGCGTTGT AACGGATAGT chrXV:380628-381186 - 43 4.61e-06 AGATCCTATT TACTTAATCTATGTATGTGATTTTTTCTTT ATTCCTTAAA chrXI:258580-259930 + 59 4.61e-06 TGCAATTCTC TACTGTCGCTTCCGTTGCTTTAGTCGCTTT GGCTAACTTT chrVII:828370-828952 - 31 5.12e-06 ACTTTGGCAC CTCTGTACTGTAGGCTTTCTTGGTTTGGTC ATTGGCTCTA chrII:237721-238542 - 15 5.12e-06 ATTTTCAGTC TGTTTGAACGTTCTCTTTTTCATTTTCTGC TGAAAGCAAG chrXI:282778-284949 - 46 5.69e-06 CGGCCTTTGG CTTTTCAGCCTTTTGCTTCTTTGGTGGAGT GTAGGTTAGA chrVI:191258-191748 - 23 6.31e-06 ACGCATTTCT TTTTTAAATTTTTGCTTCTTATCCTTCTAT AATAAACCTT chrXV:976387-978451 + 5 6.31e-06 CAGT TTCTGCGCCGTCTTCGTCCTGTTTTTTTAC AGAATCACCT chrXVI:932941-933393 - 23 6.31e-06 CTAAACTACT TATTTACGTTTAGCTTTGCTGTGGTTCTTT TATACTTAAT chrIV:366467-366807 - 11 6.31e-06 TGCCCTACGT TATTAATCTAGATTCTTGTTTTCTCTCTGT GTCTCGTTTC chrXIV:715435-717929 + 44 6.99e-06 TAATTAGCGG TTTTTTTTTGGTTTTTCTTAAGATTGGTTT TATGATTTTT chrXIII:170183-171333 + 24 6.99e-06 CGCTTTTTAC TACCTGACTAGATTTTCATTTTGTTTCTTT TGGATTGCGC chrIV:1362045-1362622 - 60 9.44e-06 AGCCAGATTT TTCGTTTACTCATTGTTTATTTGTTTGATC TGGATCACAC chrVIII:144508-146455 - 16 1.15e-05 TTCATGAATG TGTTTACGCTGTTCCTCAGAGGTCTTCTTT GTGATGCCCA chrVII:733196-733547 - 6 1.26e-05 CACGAACTTT GTTTTGCGCCTCCCCTCCCTTTGTCAGGCT GAGTG chrXIV:469699-470099 - 70 1.39e-05 G GTGTATACTTATTTTTTCCTTTTCTTCTCT GCCGGAATTT chrXVI:575402-575654 + 4 1.39e-05 TTT TCCTTCCGCATTCCTTGCGTAGTTTGTTGT GTAAATATAG chrI:28701-28992 + 25 1.53e-05 GTATATTTTT TTCGGTTCCTGCCTCTTACATGGTGTCGGT GTATCTTAAA chrIV:1488870-1490350 - 48 1.53e-05 CTGGTGTCTT CGGTGCTGCCGTCGCTGCCGGTGTCGCTTT CTTATTCTAA chrIII:107142-107862 - 5 1.68e-05 TATTTATTTT TATGTATACTTATTTTGCTTATTTTTCTTA TACT chrXI:164916-165470 + 43 2.02e-05 AAAGTATCAC CTTGGCCTCCTACCCTCTTGTTGCTGCCCT CTTCGCTGTT chrXII:147517-148011 - 54 2.02e-05 GTAAAGGTAA TATTTCATCCTACCCTCTTATTTATTGTTC CCACACTTTG chrXIII:701667-703323 + 22 2.21e-05 CTGCTGAAGT CATTGGTGCTGTTTCCGGTGGTGTTGATTC TACTGTTGCA chrV:423102-425424 - 6 2.21e-05 ATCTTGGTCT TTGTGGAGGAGCTCTGTTCTTTCTGTCTTC TCTGG chrV:550933-551529 + 44 2.42e-05 ATTTTTTATT TTTTTAAGCAGAACGTGCTGTGCTCTCCCT TTTGGGCCTT chrXV:867023-868186 - 62 2.42e-05 CAAGTTCTT GGTGTCAATTTCTTCGTGCTTGGCTTGGTT GAAATCCTTC chrVIII:119644-122039 + 49 2.89e-05 TCGATCAAAT CTCTGTCTTGAATGTCGTTGTTCTTTCTTC TTTCCTTAAT chrII:159797-160205 + 30 2.89e-05 AACGAAAGCC CTTTTGTTTTTTTTCTGTGTGTCCGGCCGC TCAGCCAAAC chrII:779440-779787 - 25 3.15e-05 TGATGCTTTG TTTTGGTGTTTATGTTTGAAATTTCAGTTT CTTTTAAATG chrX:490770-490870 - 43 3.15e-05 CTTTTTTTTT CTTTGCAGTTTCTCATTTTTATGATTTTCT AATCACTTCA chrVI:269478-270041 + 40 3.15e-05 GCTCACATTT TCTTAATGCTGAATAGTTCTTTTTTACGTT TAGCTGAGTT chrXVI:297554-298652 - 6 3.15e-05 ATTAGTGAGG GTTTGATCTTGTTCTTGTCCCGGTTATCTT CTTAT chrIII:95941-96324 - 15 3.44e-05 ATCAAAGCCT TTGTTTACCATTGTTTTTATTTACCTTTTT AGAATTGTTC chrXV:836887-837086 + 54 3.44e-05 CAATTAGGCA CTTTTTCTCTTATTATTCATATGCCTTATT GGCTTGTGGC chrVII:875079-875435 - 46 3.75e-05 AACACGGTTT TTTTGGTCTTTCATTGTTTTCGCTTTCGAT ACGCGCTAGG chrVII:986773-987091 - 10 3.75e-05 AGGTTGAGTT TGCCTTCGGTATCCCTTTCCTTTCTGCTGT CAATTCTTC chrIX:25915-26513 - 9 4.08e-05 GCTATGGGGG GTTTTGGACAGTATGTGTTGTTTTTATTTC GAGTAAAT chrXVI:384366-385381 + 58 4.08e-05 AACCATGCTC TTCCTTGGCGATTCTTTCCGCTTCTTCCAT CAATAGAGTA chrV:469290-469949 + 54 4.08e-05 TATTGTATTG TATTGTATTGTATTATTGCTATATTATTTT TTATGTATTT chrXII:827229-827587 + 68 4.44e-05 CCATCGATAG CGTTTTTGTAGTTTCTCCTCTTCGCTGCCT CCA chrIV:541228-541997 - 7 4.44e-05 ACTGATAATA TATTTTCGCGTCATTCTTGCTGATTTTCTT TTTTCT chrXI:560710-561159 + 1 5.24e-05 . TACTGTTCCGAAACTGCTCATTCTCTGTTT CAAAGACGCC chrXIII:861186-861577 + 14 5.24e-05 AAGAGATGTA CTTTTATACGGTATGTGTGGCGGTTATTTC CAGTGTTTTT chrXIV:503109-503375 - 50 5.68e-05 TCCGAGTCAT TACGGGTCCTCTTGTTTTCGTGTATGCTCC CTTCCCCGTA chrXV:896630-898787 + 4 6.67e-05 ACG TTCTTCAATCTCTTCTGGTAAGATTTCACT CAAATCTGTT chrXII:64976-65776 - 3 7.22e-05 TTTTGCCACC TTTGAATTCGCCTGCTTATCTTTCTTCTTC CG chrXVI:937327-937707 - 16 1.14e-04 CGATGTGGAG TATTCGATGAATATTTTTCATGTTTACGTT TATATAATTC chrXIV:609484-609774 - 67 1.42e-04 GGGA TATTTATGTCTTTACTTAGGTTTTTTACTT GTATACTTTC chrXII:679975-680252 - 18 1.53e-04 TATTATATTA CATGGGCTCTACTTGTTTATCTTCTATGGT AGAAAAAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTNHBCTKTTTYTTTYTTTKTTTSTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:771923-772209 5.8e-11 25_[+3]_45 chrV:349643-350019 1.8e-09 3_[+3]_67 chrIV:1239381-1240199 1.8e-09 15_[-3]_55 chrXV:1036464-1036838 1.8e-08 [+3]_70 chrVII:440475-443949 1.8e-08 22_[-3]_48 chrXIII:145711-146230 2.9e-08 68_[+3]_2 chrXI:261047-262109 3.4e-08 64_[+3]_6 chrIII:276495-276839 4.6e-08 41_[-3]_29 chrIX:77579-78267 4.6e-08 31_[-3]_39 chrV:306262-307919 4.6e-08 67_[-3]_3 chrVIII:206088-206531 5.4e-08 21_[+3]_49 chrXII:150073-151920 5.4e-08 18_[+3]_52 chrVII:677905-678460 5.4e-08 37_[-3]_33 chrI:69888-71012 9.8e-08 20_[-3]_50 chrIV:519679-520124 1.1e-07 46_[+3]_24 chrXII:561704-562038 1.5e-07 31_[-3]_39 chrIV:386255-388420 2.3e-07 25_[-3]_45 chrVII:695447-697556 2.6e-07 23_[+3]_47 chrXIII:306128-306304 3e-07 [-3]_70 chrXV:779845-781037 3e-07 66_[+3]_4 chrXVI:842693-843111 4.4e-07 2_[-3]_68 chrXV:774810-775892 5.7e-07 2_[+3]_68 chrII:477144-477809 5.7e-07 55_[+3]_15 chrVIII:17170-17457 5.7e-07 27_[-3]_43 chrVIII:354196-354773 8.3e-07 36_[+3]_34 chrXV:405502-405762 8.3e-07 10_[-3]_60 chrX:58776-58876 8.3e-07 49_[-3]_21 chrX:636564-636664 9.4e-07 26_[-3]_44 chrXV:287152-288829 1.2e-06 32_[+3]_38 chrXIII:651026-652992 1.2e-06 14_[-3]_56 chrXIII:897770-898228 1.2e-06 11_[-3]_59 chrII:486701-487029 1.2e-06 5_[-3]_65 chrXVI:640576-643612 1.5e-06 3_[+3]_67 chrXIII:225811-227251 1.5e-06 36_[-3]_34 chrVI:53103-56059 1.7e-06 52_[-3]_18 chrX:612778-612878 1.9e-06 35_[+3]_35 chrXVI:876000-876162 2.1e-06 44_[+3]_26 chrXII:604579-605604 2.1e-06 14_[+3]_56 chrIV:1012803-1013751 2.7e-06 10_[-3]_60 chrXIV:662888-664282 3e-06 60_[+3]_10 chrXI:21378-21761 3.3e-06 69_[+3]_1 chrVII:84375-84702 3.3e-06 28_[+3]_42 chrXIII:322703-323345 3.3e-06 51_[+3]_19 chrVIII:487476-488229 3.3e-06 53_[+3]_17 chrVII:122060-123153 3.3e-06 5_[-3]_65 chrV:512782-513073 3.3e-06 37_[-3]_33 chrVIII:345584-345895 3.7e-06 46_[-3]_24 chrXVI:520565-520869 3.7e-06 61_[+3]_9 chrX:75819-75919 4.1e-06 22_[-3]_48 chrXV:380628-381186 4.6e-06 42_[-3]_28 chrXI:258580-259930 4.6e-06 58_[+3]_12 chrVII:828370-828952 5.1e-06 30_[-3]_40 chrII:237721-238542 5.1e-06 14_[-3]_56 chrXI:282778-284949 5.7e-06 45_[-3]_25 chrVI:191258-191748 6.3e-06 22_[-3]_48 chrXV:976387-978451 6.3e-06 4_[+3]_66 chrXVI:932941-933393 6.3e-06 22_[-3]_48 chrIV:366467-366807 6.3e-06 10_[-3]_60 chrXIV:715435-717929 7e-06 43_[+3]_27 chrXIII:170183-171333 7e-06 23_[+3]_47 chrIV:1362045-1362622 9.4e-06 59_[-3]_11 chrVIII:144508-146455 1.1e-05 15_[-3]_55 chrVII:733196-733547 1.3e-05 5_[-3]_65 chrXIV:469699-470099 1.4e-05 69_[-3]_1 chrXVI:575402-575654 1.4e-05 3_[+3]_67 chrI:28701-28992 1.5e-05 24_[+3]_46 chrIV:1488870-1490350 1.5e-05 47_[-3]_23 chrIII:107142-107862 1.7e-05 4_[-3]_66 chrXI:164916-165470 2e-05 42_[+3]_28 chrXII:147517-148011 2e-05 53_[-3]_17 chrXIII:701667-703323 2.2e-05 21_[+3]_49 chrV:423102-425424 2.2e-05 5_[-3]_65 chrV:550933-551529 2.4e-05 43_[+3]_27 chrXV:867023-868186 2.4e-05 61_[-3]_9 chrVIII:119644-122039 2.9e-05 48_[+3]_22 chrII:159797-160205 2.9e-05 29_[+3]_41 chrII:779440-779787 3.2e-05 24_[-3]_46 chrX:490770-490870 3.2e-05 42_[-3]_28 chrVI:269478-270041 3.2e-05 39_[+3]_31 chrXVI:297554-298652 3.2e-05 5_[-3]_65 chrIII:95941-96324 3.4e-05 14_[-3]_56 chrXV:836887-837086 3.4e-05 53_[+3]_17 chrVII:875079-875435 3.7e-05 45_[-3]_25 chrVII:986773-987091 3.7e-05 9_[-3]_61 chrIX:25915-26513 4.1e-05 8_[-3]_62 chrXVI:384366-385381 4.1e-05 57_[+3]_13 chrV:469290-469949 4.1e-05 53_[+3]_17 chrXII:827229-827587 4.4e-05 67_[+3]_3 chrIV:541228-541997 4.4e-05 6_[-3]_64 chrXI:560710-561159 5.2e-05 [+3]_70 chrXIII:861186-861577 5.2e-05 13_[+3]_57 chrXIV:503109-503375 5.7e-05 49_[-3]_21 chrXV:896630-898787 6.7e-05 3_[+3]_67 chrXII:64976-65776 7.2e-05 2_[-3]_68 chrXVI:937327-937707 0.00011 15_[-3]_55 chrXIV:609484-609774 0.00014 66_[-3]_4 chrXII:679975-680252 0.00015 17_[-3]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTNHBCTKTTTYTTTYTTTKTTTSTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYTTNHBCTKTTTYTTTYTTTKTTTSTTT width=30 seqs=97 chrVII:771923-772209 ( 26) TATTTCAGCCGTATTTTTCTTTTTTTCTTT 1 chrV:349643-350019 ( 4) CATTTCCGCTATTTCTGTCCTGGTTTGTTT 1 chrIV:1239381-1240199 ( 16) TTCCTTAGCTTCTTCTTCCTTTTCTTCTTC 1 chrXV:1036464-1036838 ( 1) TTCTTGTTTTGTTGTTTTTTTTTTTTGCGT 1 chrVII:440475-443949 ( 23) TTCTTCTTCTACTTCTTCCTCTACTTCTTC 1 chrXIII:145711-146230 ( 69) TTTTTTCCCTTCTGGGTTCTTTTCTTCCTT 1 chrXI:261047-262109 ( 65) CTCTTCATCTGCTTCTGCTTCGTCTGCTTC 1 chrIII:276495-276839 ( 42) TTTTTGAATTGTTCCTTTGTTTATTTGTTT 1 chrIX:77579-78267 ( 32) TATTTCTACCATTTTTGGTGTTGTTTGTTT 1 chrV:306262-307919 ( 68) TCTTGTCTCTGTTCTTCTTTTGCTTTCTTT 1 chrVIII:206088-206531 ( 22) CATTTTTGCATATTCTCGCATGTTTTCTTT 1 chrXII:150073-151920 ( 19) TTTTTCATCATTCTCTTTCTTTCTTATGTT 1 chrVII:677905-678460 ( 38) TTTTCCCGCTTATTTTTGCGATTTTTTTTT 1 chrI:69888-71012 ( 21) CTTTTTTGCTGTTGCTTTATTTTTTATGTT 1 chrIV:519679-520124 ( 47) TGTTTTTTTTTTTTTTTTTTTTTTTAGCTC 1 chrXII:561704-562038 ( 32) TGTTTCCATTGTTTTTGTTTTTGTTTCAGT 1 chrIV:386255-388420 ( 26) CACTTCTCCTTTTCTTTTCCATTTCTTTTC 1 chrVII:695447-697556 ( 24) TTCTCCTGTTGCTTCTTTGTTTTCTGCATT 1 chrXIII:306128-306304 ( 1) GTTGTCCGGTTTTTCTTTCTTTTGTTGCTT 1 chrXV:779845-781037 ( 67) CTTTGCCGTTGCATTTGTAGTTTTTTCCTT 1 chrXVI:842693-843111 ( 3) TTTTTTATCATATTTTGTGCTTGTGTGTTT 1 chrXV:774810-775892 ( 3) CCTTTTTTCTTTCTCTGCCTGGTTTAGTTT 1 chrII:477144-477809 ( 56) TTCTAGTGCTATTTCTGGCTTTTCCTATTT 1 chrVIII:17170-17457 ( 28) TCTTTCATCATATTTTTTCCTTGTTTGTAT 1 chrVIII:354196-354773 ( 37) TTTGGTTCCTGTATCTTGTTTATTTTGTTC 1 chrXV:405502-405762 ( 11) TACTTATTCTATTTGGTGCTTGTTTTCATT 1 chrX:58776-58876 ( 50) TTTTTCAGCAATTAATTTTTTTTTTTTTTT 1 chrX:636564-636664 ( 27) CTTTCTACTCTAATTTTTTTTTTTTTGTTT 1 chrXV:287152-288829 ( 33) TATTTTTGTAGAATATTTTTTTTTCTCTTC 1 chrXIII:651026-652992 ( 15) TATTGGTGGTTTTTTTTTTGGTGTTATTTT 1 chrXIII:897770-898228 ( 12) TTCTTAAAGTATTTTTTTTTATGTTTGGTT 1 chrII:486701-487029 ( 6) CTCTTCTTCGCTTCTTCGCTTTTGGTCTTT 1 chrXVI:640576-643612 ( 4) TTCGTAGGTTGTTCTGTCTTTGTTTTCGTT 1 chrXIII:225811-227251 ( 37) TTCTGGGACGTATTGGTCCTTTCTTTCTCT 1 chrVI:53103-56059 ( 53) CTCTTTTACCTTTTTTTACTATTTTTCACT 1 chrX:612778-612878 ( 36) TTCGAGATCTTCTTCCTTCTTTTTCGCTGT 1 chrXVI:876000-876162 ( 45) TACGTATGCCTTTTTTTGTTATTTTAGCTC 1 chrXII:604579-605604 ( 15) TTTTTTATCACTTTTTCCCGTATCTTGTTT 1 chrIV:1012803-1013751 ( 11) CTTTTTTGCCTTTTATCATTTTTGTACTTT 1 chrXIV:662888-664282 ( 61) TACTCTCTCTCTCTCTTTCTCTCTCTCTCT 1 chrXI:21378-21761 ( 70) CACTAGACCGGCGTGTTTCTCTTTTTCCTT 1 chrVII:84375-84702 ( 29) CGTGTTTTTAGTTTTTGTTTTGTTTATTTT 1 chrXIII:322703-323345 ( 52) TCCTGGCACTGTTGTTGTTTAGTTCTGTGT 1 chrVIII:487476-488229 ( 54) TTCTTCGTCATCTTCTTCTGCTGCGGCGTT 1 chrVII:122060-123153 ( 6) TTTTTACCTTGATCCTTCCACTGTTTTTCC 1 chrV:512782-513073 ( 38) TTCTGCATCTTCATGTTTATTTTTGGGTGT 1 chrVIII:345584-345895 ( 47) TATTTCTTTGTTCTTTGCCGTTGTTTACGT 1 chrXVI:520565-520869 ( 62) TTGTTTACCTTATTTTTTTATTATTTATTT 1 chrX:75819-75919 ( 23) TTCTTCTCCAGTTTCTTCTCTTAGCGTTGT 1 chrXV:380628-381186 ( 43) TACTTAATCTATGTATGTGATTTTTTCTTT 1 chrXI:258580-259930 ( 59) TACTGTCGCTTCCGTTGCTTTAGTCGCTTT 1 chrVII:828370-828952 ( 31) CTCTGTACTGTAGGCTTTCTTGGTTTGGTC 1 chrII:237721-238542 ( 15) TGTTTGAACGTTCTCTTTTTCATTTTCTGC 1 chrXI:282778-284949 ( 46) CTTTTCAGCCTTTTGCTTCTTTGGTGGAGT 1 chrVI:191258-191748 ( 23) TTTTTAAATTTTTGCTTCTTATCCTTCTAT 1 chrXV:976387-978451 ( 5) TTCTGCGCCGTCTTCGTCCTGTTTTTTTAC 1 chrXVI:932941-933393 ( 23) TATTTACGTTTAGCTTTGCTGTGGTTCTTT 1 chrIV:366467-366807 ( 11) TATTAATCTAGATTCTTGTTTTCTCTCTGT 1 chrXIV:715435-717929 ( 44) TTTTTTTTTGGTTTTTCTTAAGATTGGTTT 1 chrXIII:170183-171333 ( 24) TACCTGACTAGATTTTCATTTTGTTTCTTT 1 chrIV:1362045-1362622 ( 60) TTCGTTTACTCATTGTTTATTTGTTTGATC 1 chrVIII:144508-146455 ( 16) TGTTTACGCTGTTCCTCAGAGGTCTTCTTT 1 chrVII:733196-733547 ( 6) GTTTTGCGCCTCCCCTCCCTTTGTCAGGCT 1 chrXIV:469699-470099 ( 70) GTGTATACTTATTTTTTCCTTTTCTTCTCT 1 chrXVI:575402-575654 ( 4) TCCTTCCGCATTCCTTGCGTAGTTTGTTGT 1 chrI:28701-28992 ( 25) TTCGGTTCCTGCCTCTTACATGGTGTCGGT 1 chrIV:1488870-1490350 ( 48) CGGTGCTGCCGTCGCTGCCGGTGTCGCTTT 1 chrIII:107142-107862 ( 5) TATGTATACTTATTTTGCTTATTTTTCTTA 1 chrXI:164916-165470 ( 43) CTTGGCCTCCTACCCTCTTGTTGCTGCCCT 1 chrXII:147517-148011 ( 54) TATTTCATCCTACCCTCTTATTTATTGTTC 1 chrXIII:701667-703323 ( 22) CATTGGTGCTGTTTCCGGTGGTGTTGATTC 1 chrV:423102-425424 ( 6) TTGTGGAGGAGCTCTGTTCTTTCTGTCTTC 1 chrV:550933-551529 ( 44) TTTTTAAGCAGAACGTGCTGTGCTCTCCCT 1 chrXV:867023-868186 ( 62) GGTGTCAATTTCTTCGTGCTTGGCTTGGTT 1 chrVIII:119644-122039 ( 49) CTCTGTCTTGAATGTCGTTGTTCTTTCTTC 1 chrII:159797-160205 ( 30) CTTTTGTTTTTTTTCTGTGTGTCCGGCCGC 1 chrII:779440-779787 ( 25) TTTTGGTGTTTATGTTTGAAATTTCAGTTT 1 chrX:490770-490870 ( 43) CTTTGCAGTTTCTCATTTTTATGATTTTCT 1 chrVI:269478-270041 ( 40) TCTTAATGCTGAATAGTTCTTTTTTACGTT 1 chrXVI:297554-298652 ( 6) GTTTGATCTTGTTCTTGTCCCGGTTATCTT 1 chrIII:95941-96324 ( 15) TTGTTTACCATTGTTTTTATTTACCTTTTT 1 chrXV:836887-837086 ( 54) CTTTTTCTCTTATTATTCATATGCCTTATT 1 chrVII:875079-875435 ( 46) TTTTGGTCTTTCATTGTTTTCGCTTTCGAT 1 chrVII:986773-987091 ( 10) TGCCTTCGGTATCCCTTTCCTTTCTGCTGT 1 chrIX:25915-26513 ( 9) GTTTTGGACAGTATGTGTTGTTTTTATTTC 1 chrXVI:384366-385381 ( 58) TTCCTTGGCGATTCTTTCCGCTTCTTCCAT 1 chrV:469290-469949 ( 54) TATTGTATTGTATTATTGCTATATTATTTT 1 chrXII:827229-827587 ( 68) CGTTTTTGTAGTTTCTCCTCTTCGCTGCCT 1 chrIV:541228-541997 ( 7) TATTTTCGCGTCATTCTTGCTGATTTTCTT 1 chrXI:560710-561159 ( 1) TACTGTTCCGAAACTGCTCATTCTCTGTTT 1 chrXIII:861186-861577 ( 14) CTTTTATACGGTATGTGTGGCGGTTATTTC 1 chrXIV:503109-503375 ( 50) TACGGGTCCTCTTGTTTTCGTGTATGCTCC 1 chrXV:896630-898787 ( 4) TTCTTCAATCTCTTCTGGTAAGATTTCACT 1 chrXII:64976-65776 ( 3) TTTGAATTCGCCTGCTTATCTTTCTTCTTC 1 chrXVI:937327-937707 ( 16) TATTCGATGAATATTTTTCATGTTTACGTT 1 chrXIV:609484-609774 ( 67) TATTTATGTCTTTACTTAGGTTTTTTACTT 1 chrXII:679975-680252 ( 18) CATGGGCTCTACTTGTTTATCTTCTATGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTNHBCTKTTTYTTTYTTTKTTTSTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 9.88519 E= 4.0e-034 -1324 44 -162 113 -16 -162 -103 87 -1324 93 -188 92 -1324 -220 -39 139 -210 -188 38 102 -82 61 12 9 4 19 -162 37 -100 5 89 -5 -1324 173 -162 0 -66 -50 -29 73 -100 -162 75 58 -33 26 -1324 76 -110 -50 -188 111 -391 5 -62 109 -191 101 -74 45 -1324 -188 -88 145 -1324 -50 38 100 -210 32 -29 79 -191 116 -88 34 -133 -88 -11 95 -100 -62 -120 104 -291 -1324 32 122 -174 -50 50 70 -333 12 -139 115 -1324 -11 -139 128 -82 -1324 -20 109 -259 132 50 -59 -191 -20 -50 100 -259 -62 -29 111 -491 26 -1324 130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTNHBCTKTTTYTTTYTTTKTTTSTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 97 E= 4.0e-034 0.000000 0.257732 0.061856 0.680412 0.278351 0.061856 0.092784 0.567010 0.000000 0.360825 0.051546 0.587629 0.000000 0.041237 0.144330 0.814433 0.072165 0.051546 0.247423 0.628866 0.175258 0.288660 0.206186 0.329897 0.319588 0.216495 0.061856 0.402062 0.154639 0.195876 0.350515 0.298969 0.000000 0.628866 0.061856 0.309278 0.195876 0.134021 0.154639 0.515464 0.154639 0.061856 0.319588 0.463918 0.247423 0.226804 0.000000 0.525773 0.144330 0.134021 0.051546 0.670103 0.020619 0.195876 0.123711 0.659794 0.082474 0.381443 0.113402 0.422680 0.000000 0.051546 0.103093 0.845361 0.000000 0.134021 0.247423 0.618557 0.072165 0.237113 0.154639 0.536082 0.082474 0.422680 0.103093 0.391753 0.123711 0.103093 0.175258 0.597938 0.154639 0.123711 0.082474 0.639175 0.041237 0.000000 0.237113 0.721649 0.092784 0.134021 0.268041 0.505155 0.030928 0.206186 0.072165 0.690722 0.000000 0.175258 0.072165 0.752577 0.175258 0.000000 0.164948 0.659794 0.051546 0.474227 0.268041 0.206186 0.082474 0.164948 0.134021 0.618557 0.051546 0.123711 0.154639 0.670103 0.010309 0.226804 0.000000 0.762887 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTNHBCTKTTTYTTTYTTTKTTTSTTT MEME-3 regular expression -------------------------------------------------------------------------------- [TC][TA][TC]T[TG][TCG][TAC][GT][CT]T[TG][TAC]TT[TC]T[TG][TC][CT]TT[TG][TG][TC]TT[CGT]TT[TC] -------------------------------------------------------------------------------- Time 1002.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:301085-301627 4.75e-01 100 chrVIII:144508-146455 2.22e-02 15_[-3(1.15e-05)]_55 chrXIV:631482-632111 6.63e-01 100 chrVI:220015-221510 5.64e-01 100 chrXI:55488-56189 9.96e-01 100 chrI:139005-139351 9.61e-06 39_[+1(2.52e-08)]_32 chrIV:1010251-1010474 3.74e-01 100 chrXVI:842693-843111 1.42e-05 2_[-3(4.43e-07)]_68 chrXIII:480373-480800 9.96e-01 100 chrVII:364874-366736 8.47e-01 100 chrVII:185354-185786 6.44e-02 100 chrXI:162222-162709 1.32e-07 64_[-1(5.99e-11)]_7 chrIV:427247-429000 9.51e-01 100 chrII:680302-681971 1.89e-01 100 chrXVI:445771-446730 2.00e-01 100 chrIV:652551-653167 8.94e-01 100 chrXI:313233-313990 6.64e-01 100 chrIV:1488870-1490350 1.77e-02 47_[-3(1.53e-05)]_23 chrXIV:350881-352967 9.93e-01 100 chrIV:555068-556688 9.69e-01 100 chrXII:147517-148011 2.74e-02 53_[-3(2.02e-05)]_17 chrIV:1434099-1435900 5.18e-01 100 chrII:159797-160205 1.97e-02 29_[+3(2.89e-05)]_41 chrXI:228622-229610 2.80e-01 100 chrXVI:213054-214201 3.69e-01 100 chrVII:141533-142142 6.92e-01 100 chrXV:680365-680972 8.32e-01 100 chrXI:490810-491205 4.73e-16 30_[-2(1.00e-11)]_2_[+1(6.30e-12)]_\ 10 chrVII:700135-701239 6.23e-01 100 chrXV:779845-781037 1.62e-04 66_[+3(2.99e-07)]_4 chrXII:982619-982848 6.36e-01 100 chrIX:247616-248155 6.93e-01 100 chrXVI:576156-576719 6.99e-01 100 chrII:266221-266657 3.50e-13 8_[-2(1.45e-10)]_2_[+1(1.82e-10)]_\ 32 chrIV:359389-359760 3.74e-01 100 chrXV:612666-613507 8.18e-01 100 chrIV:431252-431711 8.55e-01 100 chrXIII:532675-534734 7.91e-01 100 chrV:544539-545124 9.90e-01 100 chrXII:534380-534849 7.85e-01 100 chrVIII:45417-46712 8.41e-01 100 chrX:354067-354167 1.49e-01 100 chrI:69888-71012 4.01e-04 20_[-3(9.80e-08)]_50 chrVIII:160226-160789 9.30e-01 100 chrXII:708038-711191 7.90e-01 100 chrXIII:31382-32092 8.31e-01 100 chrXIII:861186-861577 8.58e-02 13_[+3(5.24e-05)]_57 chrXIV:498404-498687 9.27e-02 100 chrVII:56363-58893 3.57e-01 100 chrXVI:775684-776023 3.81e-01 100 chrXII:903144-904839 5.19e-01 100 chrIV:953035-953650 6.56e-01 100 chrXV:503116-504486 9.22e-01 100 chrXII:1040067-1041203 1.61e-03 51_[+2(8.13e-05)]_20 chrVII:677905-678460 1.35e-06 27_[-3(5.12e-06)]_6_[-1(2.17e-05)]_\ 8 chrXI:258580-259930 1.86e-03 58_[+3(4.61e-06)]_12 chrX:105257-105357 6.26e-01 100 chrV:423102-425424 1.47e-02 5_[-3(2.21e-05)]_65 chrXVI:329063-329812 4.29e-01 100 chrV:298128-302002 2.22e-02 14_[+2(6.89e-05)]_57 chrXI:729-1101 7.59e-01 100 chrXII:636681-640202 9.89e-01 100 chrXI:321580-322168 4.76e-01 100 chrX:458363-458463 9.98e-02 100 chrIX:203626-203893 3.77e-01 100 chrIV:366467-366807 2.15e-02 10_[-3(6.31e-06)]_60 chrV:545544-546737 1.97e-02 39_[+1(7.56e-05)]_32 chrXIII:137276-137606 2.38e-01 100 chrXIII:701667-703323 2.40e-02 21_[+3(2.21e-05)]_49 chrXII:875252-876094 2.72e-01 100 chrXII:150073-151920 3.70e-04 18_[+3(5.41e-08)]_52 chrVII:726879-728297 7.67e-01 100 chrX:531624-531724 5.86e-09 15_[+1(4.79e-12)]_56 chrXI:163179-164561 6.05e-01 100 chrXII:783945-784463 3.74e-01 100 chrXVI:315828-316206 4.68e-02 100 chrIX:210679-211281 7.47e-01 100 chrXII:64309-64722 2.96e-02 100 chrIV:410232-410755 9.46e-01 100 chrXI:430601-431255 9.79e-01 100 chrV:469290-469949 9.32e-02 53_[+3(4.08e-05)]_17 chrXVI:498049-499306 2.28e-01 100 chrV:151732-152431 2.19e-01 100 chrXIV:437098-437405 8.20e-01 100 chrVII:483310-483772 2.65e-02 100 chrXI:614464-614805 2.64e-01 100 chrXVI:417824-418465 4.96e-02 100 chrXII:659060-660138 1.15e-01 100 chrXV:882700-884161 7.56e-01 100 chrVII:736209-736833 8.96e-01 100 chrV:306262-307919 2.51e-04 67_[-3(4.64e-08)]_3 chrX:414819-414919 1.34e-08 62_[-2(2.82e-12)]_9 chrXV:1027787-1029436 5.60e-01 100 chrVII:437158-438502 3.47e-01 100 chrXIV:720810-723868 2.52e-01 100 chrVII:316224-316432 2.04e-01 100 chrXVI:297554-298652 1.02e-02 5_[-3(3.15e-05)]_65 chrXII:100811-101147 5.51e-01 100 chrXVI:818982-820019 8.39e-01 100 chrVII:986773-987091 1.31e-02 9_[-3(3.75e-05)]_61 chrIX:391485-392142 7.09e-01 100 chrII:63061-63516 9.29e-01 100 chrXVI:585604-585894 6.18e-01 100 chrII:486701-487029 2.03e-03 5_[-3(1.20e-06)]_65 chrXI:513036-513582 1.15e-09 65_[-1(1.31e-12)]_6 chrXVI:770201-771111 5.44e-02 64_[-1(3.31e-05)]_7 chrVII:695447-697556 2.82e-05 23_[+3(2.61e-07)]_47 chrXVI:937327-937707 1.79e-01 100 chrXII:793799-796370 7.37e-01 100 chrXIV:597650-597959 5.86e-02 100 chrXII:855777-857605 9.27e-01 100 chrIV:621724-622227 6.76e-01 100 chrIX:316216-316471 3.44e-01 100 chrV:166680-167846 3.62e-01 100 chrIV:1012803-1013751 1.36e-02 10_[-3(2.68e-06)]_60 chrXVI:941372-942850 5.29e-01 100 chrXV:386155-386388 1.24e-01 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6.59e-01 100 chrXII:447988-448950 2.31e-01 100 chrXII:818523-820415 7.88e-02 25_[-1(2.73e-05)]_46 chrXII:234615-235118 3.12e-01 100 chrXV:251313-252560 8.35e-01 100 chrII:441380-441568 5.51e-01 100 chrVII:576296-577881 7.05e-01 100 chrXVI:875071-875825 8.64e-01 100 chrXV:31083-32218 1.62e-01 100 chrXII:242177-243534 5.38e-01 100 chrVI:167297-167838 1.07e-01 100 chrVII:438968-439964 4.90e-01 100 chrIII:118186-118629 4.74e-02 26_[+3(6.16e-05)]_44 chrXII:756163-756654 2.51e-01 100 chrXV:874812-875758 7.07e-02 100 chrVIII:239229-239954 1.96e-01 100 chrV:434365-434758 3.06e-07 22_[-1(5.60e-10)]_49 chrIII:276495-276839 1.64e-04 41_[-3(4.64e-08)]_29 chrXV:110032-111184 1.48e-01 100 chrXII:91300-91840 2.28e-01 100 chrIX:46362-46999 5.18e-01 100 chrVII:715124-715589 1.53e-01 100 chrXVI:622384-622864 7.52e-01 100 chrVIII:487476-488229 9.00e-03 53_[+3(3.34e-06)]_17 chrXVI:453917-454781 6.30e-03 29_[+2(9.55e-06)]_42 chrXIII:501604-502350 5.81e-01 100 chrXI:261047-262109 3.14e-04 64_[+3(3.41e-08)]_6 chrVIII:74792-76345 7.77e-01 100 chrXII:888557-889688 2.03e-01 100 chrXVI:768850-769851 7.71e-01 100 chrXII:540723-541788 9.14e-02 100 chrVIII:222263-222942 9.41e-01 100 chrXII:1007010-1007831 5.53e-01 100 chrXVI:108531-114704 5.08e-01 100 chrXIII:837161-837516 7.55e-01 100 chrVII:1024491-1024727 2.17e-01 100 chrX:703301-703401 1.39e-01 100 chrXVI:55861-56403 5.34e-01 100 chrV:260195-261175 4.32e-01 100 chrV:404128-404574 5.67e-01 100 chrVII:398463-400610 7.83e-01 100 chrXIII:554282-556821 2.34e-01 100 chrXV:836887-837086 1.19e-03 53_[+3(3.44e-05)]_17 chrIV:568726-569287 3.25e-14 19_[+2(9.70e-10)]_9_[+1(3.63e-12)]_\ 14 chrXVI:376865-377377 5.65e-01 100 chrXVI:209682-210453 7.16e-01 100 chrIX:370095-370623 6.19e-01 100 chrXIII:649272-649654 7.43e-01 100 chrX:540376-540476 4.29e-01 100 chrXII:348025-348800 2.67e-01 100 chrI:142125-143751 2.89e-01 100 chrVII:648745-649374 5.37e-01 100 chrXV:380628-381186 1.70e-02 42_[-3(4.61e-06)]_28 chrV:176947-177416 2.25e-06 17_[+1(4.16e-10)]_54 chrXIII:322703-323345 5.44e-04 51_[+3(3.34e-06)]_19 chrXIII:131628-132022 2.31e-08 42_[-1(4.60e-10)]_29 chrXII:64976-65776 4.97e-02 2_[-3(7.22e-05)]_68 chrXI:84010-84462 1.17e-01 100 chrXV:552011-552626 4.51e-01 100 chrXII:679975-680252 2.39e-01 100 chrXV:710142-710602 1.90e-01 100 chrII:36268-36574 1.83e-01 100 chrXV:176726-177048 8.58e-02 100 chrXV:184759-185216 2.70e-01 100 chrII:478949-479470 7.45e-01 100 chrXVI:640576-643612 3.31e-03 3_[+3(1.52e-06)]_67 chrVIII:281145-281479 5.52e-01 100 chrXIV:725871-726349 2.59e-05 66_[-1(7.65e-08)]_5 chrXII:827229-827587 4.09e-02 67_[+3(4.44e-05)]_3 chrIII:90855-91114 4.01e-05 16_[+1(4.32e-08)]_55 chrXII:809701-815817 7.65e-02 100 chrX:466081-466181 6.62e-01 100 chrXIV:619699-620051 6.73e-01 100 chrVIII:119644-122039 1.36e-02 48_[+3(2.89e-05)]_22 chrIII:95941-96324 2.09e-03 14_[-3(3.44e-05)]_56 chrXV:252823-253703 8.99e-01 100 chrVIII:55614-56320 6.76e-01 100 chrVIII:142287-143251 2.38e-01 100 chrXI:75025-75220 5.49e-01 100 chrXII:506120-507475 1.91e-01 100 chrXII:340866-341746 3.54e-01 100 chrII:197251-197815 3.55e-13 31_[-2(2.07e-09)]_2_[+1(1.79e-11)]_\ 9 chrXIII:122915-124238 6.68e-01 100 chrX:172709-172809 6.18e-01 100 chrXIV:575113-577467 3.44e-01 100 chrIV:129309-130939 4.87e-01 100 chrXV:1036464-1036838 4.59e-05 [+3(1.79e-08)]_70 chrXV:228168-228522 4.53e-07 56_[-2(3.50e-11)]_15 chrXII:1010231-1010563 1.80e-01 100 chrX:683677-683777 7.74e-01 100 chrVI:157899-158361 7.44e-01 100 chrIV:221125-222310 1.07e-02 100 chrXIII:115537-118995 3.09e-01 100 chrVII:561253-561713 2.53e-01 100 chrXIV:662888-664282 1.43e-02 60_[+3(2.99e-06)]_10 chrX:523849-523949 9.80e-02 100 chrVIII:289573-289863 9.77e-01 100 chrIV:835862-837967 4.57e-01 100 chrXII:406835-407478 9.76e-01 100 chrXIV:569496-570044 5.36e-01 100 chrXVI:153664-154826 6.70e-01 100 chrXV:79733-80037 2.98e-02 100 chrV:487089-487581 6.91e-07 38_[-1(1.09e-09)]_33 chrIV:525384-527335 9.69e-01 100 chrXVI:927693-928029 3.88e-01 100 chrX:612778-612878 1.08e-03 35_[+3(1.91e-06)]_35 chrXIII:306128-306304 8.84e-04 [-3(2.99e-07)]_70 chrII:161572-161827 2.36e-01 100 chrVIII:5333-5694 3.28e-01 100 chrVII:876211-878398 3.57e-01 100 chrXII:881690-881903 5.43e-01 100 chrVI:108060-108329 2.91e-01 100 chrXI:168733-168951 8.29e-01 100 chrVII:412045-412573 1.21e-04 27_[-1(4.92e-08)]_44 chrIII:292671-293058 4.17e-01 100 chrXII:1028804-1030419 1.64e-01 100 chrV:550933-551529 7.36e-02 43_[+3(2.42e-05)]_27 chrXII:459630-460742 6.92e-01 100 chrVIII:354196-354773 7.78e-06 36_[+3(8.32e-07)]_34 chrV:492151-492557 1.11e-14 40_[-1(3.76e-10)]_2_[+2(1.00e-11)] chrVII:205328-205895 9.98e-05 51_[+1(4.32e-08)]_20 chrXI:260226-260715 9.13e-01 100 chrXI:363917-365271 9.67e-01 100 chrX:408827-408927 4.22e-01 100 chrXII:426951-427436 1.93e-14 [+2(9.70e-10)]_9_[+1(3.63e-12)]_33 chrIV:915088-916260 1.31e-01 100 chrXI:431764-433186 8.83e-01 100 chrXV:505043-505351 8.18e-01 100 chrXIII:696153-697633 3.78e-01 100 chrV:363620-364677 5.15e-01 100 chrXV:571762-572388 8.55e-01 100 chrIV:1328793-1330337 9.41e-01 100 chrXV:287152-288829 2.41e-04 32_[+3(1.20e-06)]_38 chrXV:268612-268868 3.19e-01 100 chrIV:619713-620168 3.56e-09 71_[-1(2.37e-12)] chrIX:333406-333620 8.91e-01 100 chrXV:854024-854967 4.24e-01 100 chrVII:84375-84702 2.87e-03 28_[+3(3.34e-06)]_42 chrVII:31442-31956 7.00e-01 100 chrXII:837606-839428 6.25e-02 100 chrXI:21378-21761 1.38e-04 69_[+3(3.34e-06)]_1 chrX:608183-608283 5.77e-01 100 chrVII:554675-555523 2.81e-01 100 chrXIV:339973-340509 2.09e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************