******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CUP2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:332308-333081 1.0000 100 chrVIII:358286-358773 1.0000 100 chrXIV:602098-602550 1.0000 100 chrVII:277027-278697 1.0000 100 chrXI:261083-261998 1.0000 100 chrI:181124-181472 1.0000 100 chrIV:1401268-1403394 1.0000 100 chrXVI:810575-811146 1.0000 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1.0000 100 chrIV:541198-541973 1.0000 100 chrIII:227708-228544 1.0000 100 chrIV:14-209 1.0000 100 chrIV:619664-620196 1.0000 100 chrVII:845254-846053 1.0000 100 chrXI:157894-159615 1.0000 100 chrXII:231830-234231 1.0000 100 chrVIII:147591-148789 1.0000 100 chrXII:656821-657202 1.0000 100 chrXIV:715846-716631 1.0000 100 chrXIII:288061-289951 1.0000 100 chrIV:720998-721586 1.0000 100 chrV:469260-469693 1.0000 100 chrV:69105-69325 1.0000 100 chrVI:54609-54873 1.0000 100 chrVI:191153-191774 1.0000 100 chrXV:114363-114536 1.0000 100 chrIV:489728-491256 1.0000 100 chrXI:219581-220139 1.0000 100 chrIX:231303-232459 1.0000 100 chrXV:722944-724661 1.0000 100 chrXIV:756195-756593 1.0000 100 chrXVI:172921-174102 1.0000 100 chrX:381584-381684 1.0000 100 chrX:531615-531715 1.0000 100 chrX:517647-517747 1.0000 100 chrI:166166-166617 1.0000 100 chrV:122138-123016 1.0000 100 chrIV:491467-492703 1.0000 100 chrIV:437560-438099 1.0000 100 chrIV:568702-569338 1.0000 100 chrXVI:451692-453200 1.0000 100 chrXII:710621-710874 1.0000 100 chrIX:370225-370839 1.0000 100 chrVII:328383-329084 1.0000 100 chrXII:369649-370295 1.0000 100 chrII:9452-9940 1.0000 100 chrXIV:631699-632129 1.0000 100 chrXVI:718344-719636 1.0000 100 chrVII:115322-115736 1.0000 100 chrXIII:352083-352732 1.0000 100 chrVI:82450-84444 1.0000 100 chrIV:1150726-1151140 1.0000 100 chrXII:368674-369452 1.0000 100 chrXV:968148-968377 1.0000 100 chrV:269221-269906 1.0000 100 chrXVI:432582-434392 1.0000 100 chrII:165082-165423 1.0000 100 chrXII:897683-899733 1.0000 100 chrXVI:822756-824215 1.0000 100 chrXI:617702-619277 1.0000 100 chrVIII:237748-238122 1.0000 100 chrIX:183283-183688 1.0000 100 chrIX:325736-326153 1.0000 100 chrIX:336089-336611 1.0000 100 chrXIV:229585-230800 1.0000 100 chrX:227751-227851 1.0000 100 chrXVI:55822-56432 1.0000 100 chrXI:67819-68008 1.0000 100 chrXV:678041-678386 1.0000 100 chrV:362156-362457 1.0000 100 chrVII:205314-205782 1.0000 100 chrXV:866455-868120 1.0000 100 chrVII:555058-557484 1.0000 100 chrXV:758971-759531 1.0000 100 chrXIV:330779-331098 1.0000 100 chrV:270056-270249 1.0000 100 chrXIV:493689-495719 1.0000 100 chrXVI:692845-695035 1.0000 100 chrX:391822-391922 1.0000 100 chrIV:83317-83802 1.0000 100 chrVII:648166-648482 1.0000 100 chrXVI:208590-210480 1.0000 100 chrXIV:241401-241867 1.0000 100 chrXII:523881-524216 1.0000 100 chrXI:163333-164494 1.0000 100 chrVI:63992-65370 1.0000 100 chrXIII:650833-652943 1.0000 100 chrXIII:747357-748146 1.0000 100 chrXV:841572-842890 1.0000 100 chrXV:300906-301488 1.0000 100 chrXIII:504902-505231 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CUP2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CUP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CUP2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CUP2/background): A 0.309 C 0.191 G 0.191 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF CDMSSGGRATCGAACCSVBGAYCTYCNGV MEME-1 width = 29 sites = 76 llr = 1423 E-value = 5.7e-274 ******************************************************************************** -------------------------------------------------------------------------------- Motif CDMSSGGRATCGAACCSVBGAYCTYCNGV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 233:23:55:::aa::12:27:1::2214 pos.-specific C 5:544:::2:7:::a7433:166245332 probability G 242447a51::a::::3457:13211264 matrix T 13:2::::2a3::::32:3:2316523:: bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * * **** Entropy 1.2 ** ******* * (27.0 bits) 1.0 *** ******* * * 0.7 ***** ******* * ** * 0.5 * ****** ***************** ** 0.2 ******** ***************** ** 0.0 ----------------------------- Multilevel CGCCGGGGATCGAACCCGGGACCTTCCGA consensus AAGCA AT T TGCCA TGCCATCG sequence T T AT TA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMSSGGRATCGAACCSVBGAYCTYCNGV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrV:469260-469693 - 70 1.14e-12 TT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXIII:420316-420898 + 37 1.14e-12 AAAATGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXIII:586364-586894 + 63 1.14e-12 AAAATGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGC chrV:438522-438963 - 47 1.14e-12 AAATTGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXI:307966-308428 + 3 1.14e-12 TT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrX:378215-378315 - 45 1.14e-12 AAATTGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrVII:823342-823696 - 52 1.14e-12 AAAATGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXV:663522-664095 + 60 1.14e-12 AAAATGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrIX:183283-183688 + 11 2.71e-12 TAAGTGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrV:443024-443365 + 64 2.71e-12 AATATGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG TTATTAGC chrXVI:819329-819878 - 15 2.71e-12 TAAATGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrXIV:569668-570086 + 46 2.71e-12 AGAATGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrIV:667734-668252 + 70 2.71e-12 AAAATGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG TT chrXII:1051883-1052230 + 71 2.71e-12 ATAATGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG T chrV:311722-312303 + 67 5.47e-11 TCATTGGACG CAACCGGAATCGAACCGATGACCTCTTCC TTGCA chrIV:1016971-1017503 + 26 6.26e-11 GAAACTCCGA AGCGGGGAGTCGAACCCCGGTCTCCACGG TGAGAACGTG chrIV:1075247-1075746 + 32 6.26e-11 CAAATGTTCC AACCGAGGATCGAACTCGGGACCTTTGCC GTGTGAAGGC chrIV:644975-645363 + 40 7.14e-11 AAAAAGGTCC TACCCGGATTCGAACCGGGGTTGTCCGGA TCAAAACCGA chrIII:168075-168552 + 44 7.14e-11 AAAAAGGTCC TACCCGGATTCGAACCGGGGTTGTCCGGA TCAAAACCGA chrIV:802536-803019 + 10 7.14e-11 AAGAGGTCC TACCCGGATTCGAACCGGGGTTGTCCGGA TCAAAACCGA chrV:130845-131353 + 39 9.27e-11 AAATAGGTCT TACCCGGATTCGAACCGGGGTTGTTCGGA TCAAAACCGA chrXV:340106-340596 + 4 1.05e-10 CCC CGCCAGGACTTGAACCTGGAATCTTCTGG TTCGTAGCCA chrV:492203-492573 + 20 1.05e-10 AATCCTTCCC CGCCAGGACTTGAACCTGGAATCTTCTGG TTCGTAGCCA chrXI:490727-491362 - 12 1.05e-10 AATTCTTCCC CGCCAGGACTTGAACCTGGAATCTTCTGG TTCGTAGCCA chrIV:488461-489155 + 45 1.20e-10 ATTCTGATCC AACCGAGGTTCGAACTCGGGATCTTCGCC GTGTAAAGGC chrX:374173-374273 + 32 1.36e-10 AAAGCACTCA CGATGGGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrII:405666-406240 - 12 1.36e-10 AAAGCACTCA CGATGGGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrXI:162291-162744 + 26 1.36e-10 AAAACACTCA CGATGGGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrV:435510-436008 + 49 1.54e-10 AGAAAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrIII:151030-151526 + 62 1.54e-10 AGAAAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrXIII:480388-480838 + 64 1.54e-10 AAGAAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGT chrXVI:581841-582351 - 54 1.54e-10 AGAAAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrXVI:860183-860678 - 35 2.51e-10 AATCTGCGCA AGCCCGGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrVII:115322-115736 - 70 3.18e-10 TC ATAGGGGGCTCGAACCCCTGACATTTCGG TATCCTTGCT chrIV:359360-359994 - 11 3.18e-10 AGAACTCCTC ATAGGGGGCTCGAACCCCTGACATTTCGG TATCCTTGCT chrXI:578696-579389 - 34 3.18e-10 AGAACTCCTC ATAGGGGGCTCGAACCCCTGACATTTCGG TATCCTTGCT chrV:176897-177439 - 18 3.57e-10 AGTACTCCGA TACGGGGAGTCGAACCCCGGTCTCCACGG TGAAAGCGTG chrII:644958-645413 - 69 3.57e-10 CGA TACGGGGAGTCGAACCCCGGTCTCCACGG TGAAAGCGTG chrXV:300906-301488 - 17 4.01e-10 AAAGGGGGCG AGCTGGGAATTGAACCCAGGGCCTCTCGC ATGCTTTGTC chrVI:101183-101724 - 41 4.01e-10 AAAGGGGGCG AGCTGGGAATTGAACCCAGGGCCTCTCGC ATGCTTTGTC chrIV:884247-884645 - 63 4.49e-10 AAGTGCTCG AGGTGGGGTTTGAACCCACGACGGTCGCG TTGCTTTTAA chrII:266189-266686 - 29 1.33e-09 AAAATGCTTC CAATCGGATTTGAACCGATGATCTCCACA TTACTAGTGT chrX:415715-415815 + 18 1.64e-09 AAATTGAAAC GGACAGGAATTGAACCTGCAACCCTTCGA TTGCAATCTT chrXI:302701-303233 - 72 1.64e-09 . GGACAGGAATTGAACCTGCAACCCTTCGA TTGCAATCTT chrXIII:379073-379596 + 25 1.64e-09 AAATTGAAAC GGACAGGAATTGAACCTGCAACCCTTCGA TTGCAATCTT chrX:390837-390937 + 12 1.81e-09 AATATGCTCC AGGGGAGGTTCGAACTCTCGACCTTCAGA TTATGAGACT chrXIII:572649-573147 + 41 1.81e-09 AATGTGCTCC AGGGGAGGTTCGAACTCTCGACCTTCAGA TTATGAGACT chrXVI:856726-857125 - 65 2.45e-09 ATGGACG AGTCCGGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrIV:410143-410774 - 9 2.45e-09 AATTTGGACG AGTCCGGAATCGAACCGGAGACCTCTCCC ATGCTAAG chrVIII:466805-467293 - 28 4.78e-09 ATAATGCCAC CTGCCAGAATTGAACTAGCGACCTTTGCA TTACAAGTGC chrIX:336089-336611 + 55 8.98e-09 AAATCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrIV:568702-569338 - 31 8.98e-09 AATTCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrX:204544-204644 - 26 8.98e-09 AAATCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrXIII:463360-463878 - 22 8.98e-09 AAATCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrVII:544406-544853 + 4 8.98e-09 CGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrXII:975778-976198 + 51 1.27e-08 TAAACGACCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrVII:730967-731436 - 25 1.27e-08 AAAACGACCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrXI:74437-74985 - 2 1.27e-08 TAAGCGACCC CAGTGAGGGTTGAACTCACGATCTTGCGA T chrVII:779414-779933 - 30 1.38e-08 ATCTTGAGCG GTACGAGAATCGAACCCGTGTCCCCACCT TGGAAGGGTG chrXVI:622323-622838 + 16 1.63e-08 TAAATGCGAA TTCTGTGGATCGAACACAGGACCTCCAGA TAACTTGACC chrII:347400-347927 + 46 1.63e-08 GACGGTTGTC CGCGCGAGTTCGAACCTCGCATCCTTCAG TAATATTTTT chrXIV:725773-726582 - 6 1.63e-08 GACGGTTGTC CGCGCGAGTTCGAACCTCGCATCCTTCAG TATTT chrVIII:358286-358773 + 5 1.63e-08 CGAA TTCTGTGGATCGAACACAGGACCTCCAGA TAACTTGACC chrIV:519650-519963 + 43 2.25e-08 GACGGTTGTC CGCGCGAGTTCGAACCTCGCATCCTTCAA TAACTTATTT chrXVI:744081-744574 - 44 3.08e-08 ATTTTGCCAC CTGTCAGAATTGAACTAACGACCTTTGCA TTACAAGTGC chrII:642853-643256 + 9 4.18e-08 GAAGCTCG CACTCAGGATCGAACTAAGGACCAACAGA TTTGCAATCT chrXVI:435654-436180 + 32 4.18e-08 AGAAAGCTCG CACTCAGGATCGAACTAAGGACCAACAGA TTTGCAATCT chrIV:437560-438099 - 40 5.62e-08 ATGACGACAA CTGCAGGACTCGAACCTGCGCGGGCAAAG CCCAAAAGAT chrXIII:258947-259445 + 18 5.62e-08 ATAACGACAA CTGCAGGACTCGAACCTGCGCGGGCAAAG CCCAAAAGAT chrIV:946143-946629 - 30 5.62e-08 AAAATCTCCC GGGGGCGAGTCGAACGCCCGATCTCAAGA TTTCGTAGTG chrII:226962-227351 - 16 5.62e-08 ATAACGACAA CTGCAGGACTCGAACCTGCGCGGGCAAAG CCCAAAAGAT chrVII:700149-701257 - 69 6.97e-08 TAC CCGCGGGGTTTGAACCCGCGCCTCCGAAG AGATCAGGAC chrIII:149706-150198 - 55 6.97e-08 TTAATAGCGC CGCTCGGTTTCGATCCGAGGACATCAGGG TTATGAGCCC chrXVI:689383-689864 - 39 1.90e-07 AATACGACAC CAGCAGGATTTGAACCAGCGCGGGCAGAG CCCAACAGAT chrV:288143-288732 + 62 1.90e-07 AAAACGACAC CAGCAGGATTTGAACCAGCGCGGGCAGAG CCCAACAGAT chrXV:274474-275019 - 43 4.66e-07 AATGCGTCAC AGACAGGATTCGAACCTGCGCAGGTAAAA CCCAATGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMSSGGRATCGAACCSVBGAYCTYCNGV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:469260-469693 1.1e-12 69_[-1]_2 chrXIII:420316-420898 1.1e-12 36_[+1]_35 chrXIII:586364-586894 1.1e-12 62_[+1]_9 chrV:438522-438963 1.1e-12 46_[-1]_25 chrXI:307966-308428 1.1e-12 2_[+1]_69 chrX:378215-378315 1.1e-12 44_[-1]_27 chrVII:823342-823696 1.1e-12 51_[-1]_20 chrXV:663522-664095 1.1e-12 59_[+1]_12 chrIX:183283-183688 2.7e-12 10_[+1]_61 chrV:443024-443365 2.7e-12 63_[+1]_8 chrXVI:819329-819878 2.7e-12 14_[-1]_57 chrXIV:569668-570086 2.7e-12 45_[+1]_26 chrIV:667734-668252 2.7e-12 69_[+1]_2 chrXII:1051883-1052230 2.7e-12 70_[+1]_1 chrV:311722-312303 5.5e-11 66_[+1]_5 chrIV:1016971-1017503 6.3e-11 25_[+1]_46 chrIV:1075247-1075746 6.3e-11 31_[+1]_40 chrIV:644975-645363 7.1e-11 39_[+1]_32 chrIII:168075-168552 7.1e-11 43_[+1]_28 chrIV:802536-803019 7.1e-11 9_[+1]_62 chrV:130845-131353 9.3e-11 38_[+1]_33 chrXV:340106-340596 1.1e-10 3_[+1]_68 chrV:492203-492573 1.1e-10 19_[+1]_52 chrXI:490727-491362 1.1e-10 11_[-1]_60 chrIV:488461-489155 1.2e-10 44_[+1]_27 chrX:374173-374273 1.4e-10 31_[+1]_40 chrII:405666-406240 1.4e-10 11_[-1]_60 chrXI:162291-162744 1.4e-10 25_[+1]_46 chrV:435510-436008 1.5e-10 48_[+1]_23 chrIII:151030-151526 1.5e-10 61_[+1]_10 chrXIII:480388-480838 1.5e-10 63_[+1]_8 chrXVI:581841-582351 1.5e-10 53_[-1]_18 chrXVI:860183-860678 2.5e-10 34_[-1]_37 chrVII:115322-115736 3.2e-10 69_[-1]_2 chrIV:359360-359994 3.2e-10 10_[-1]_61 chrXI:578696-579389 3.2e-10 33_[-1]_38 chrV:176897-177439 3.6e-10 17_[-1]_54 chrII:644958-645413 3.6e-10 68_[-1]_3 chrXV:300906-301488 4e-10 16_[-1]_55 chrVI:101183-101724 4e-10 40_[-1]_31 chrIV:884247-884645 4.5e-10 62_[-1]_9 chrII:266189-266686 1.3e-09 28_[-1]_43 chrX:415715-415815 1.6e-09 17_[+1]_54 chrXI:302701-303233 1.6e-09 71_[-1] chrXIII:379073-379596 1.6e-09 24_[+1]_47 chrX:390837-390937 1.8e-09 11_[+1]_60 chrXIII:572649-573147 1.8e-09 40_[+1]_31 chrXVI:856726-857125 2.4e-09 64_[-1]_7 chrIV:410143-410774 2.4e-09 8_[-1]_63 chrVIII:466805-467293 4.8e-09 27_[-1]_44 chrIX:336089-336611 9e-09 54_[+1]_17 chrIV:568702-569338 9e-09 30_[-1]_41 chrX:204544-204644 9e-09 25_[-1]_46 chrXIII:463360-463878 9e-09 21_[-1]_50 chrVII:544406-544853 9e-09 3_[+1]_68 chrXII:975778-976198 1.3e-08 50_[+1]_21 chrVII:730967-731436 1.3e-08 24_[-1]_47 chrXI:74437-74985 1.3e-08 1_[-1]_70 chrVII:779414-779933 1.4e-08 29_[-1]_42 chrXVI:622323-622838 1.6e-08 15_[+1]_56 chrII:347400-347927 1.6e-08 45_[+1]_26 chrXIV:725773-726582 1.6e-08 5_[-1]_66 chrVIII:358286-358773 1.6e-08 4_[+1]_67 chrIV:519650-519963 2.3e-08 42_[+1]_29 chrXVI:744081-744574 3.1e-08 43_[-1]_28 chrII:642853-643256 4.2e-08 8_[+1]_63 chrXVI:435654-436180 4.2e-08 31_[+1]_40 chrIV:437560-438099 5.6e-08 39_[-1]_32 chrXIII:258947-259445 5.6e-08 17_[+1]_54 chrIV:946143-946629 5.6e-08 29_[-1]_42 chrII:226962-227351 5.6e-08 15_[-1]_56 chrVII:700149-701257 7e-08 68_[-1]_3 chrIII:149706-150198 7e-08 54_[-1]_17 chrXVI:689383-689864 1.9e-07 38_[-1]_33 chrV:288143-288732 1.9e-07 61_[+1]_10 chrXV:274474-275019 4.7e-07 42_[-1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMSSGGRATCGAACCSVBGAYCTYCNGV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CDMSSGGRATCGAACCSVBGAYCTYCNGV width=29 seqs=76 chrV:469260-469693 ( 70) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrXIII:420316-420898 ( 37) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrXIII:586364-586894 ( 63) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrV:438522-438963 ( 47) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrXI:307966-308428 ( 3) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrX:378215-378315 ( 45) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrVII:823342-823696 ( 52) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrXV:663522-664095 ( 60) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrIX:183283-183688 ( 11) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrV:443024-443365 ( 64) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrXVI:819329-819878 ( 15) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrXIV:569668-570086 ( 46) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrIV:667734-668252 ( 70) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrXII:1051883-1052230 ( 71) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrV:311722-312303 ( 67) CAACCGGAATCGAACCGATGACCTCTTCC 1 chrIV:1016971-1017503 ( 26) AGCGGGGAGTCGAACCCCGGTCTCCACGG 1 chrIV:1075247-1075746 ( 32) AACCGAGGATCGAACTCGGGACCTTTGCC 1 chrIV:644975-645363 ( 40) TACCCGGATTCGAACCGGGGTTGTCCGGA 1 chrIII:168075-168552 ( 44) TACCCGGATTCGAACCGGGGTTGTCCGGA 1 chrIV:802536-803019 ( 10) TACCCGGATTCGAACCGGGGTTGTCCGGA 1 chrV:130845-131353 ( 39) TACCCGGATTCGAACCGGGGTTGTTCGGA 1 chrXV:340106-340596 ( 4) CGCCAGGACTTGAACCTGGAATCTTCTGG 1 chrV:492203-492573 ( 20) CGCCAGGACTTGAACCTGGAATCTTCTGG 1 chrXI:490727-491362 ( 12) CGCCAGGACTTGAACCTGGAATCTTCTGG 1 chrIV:488461-489155 ( 45) AACCGAGGTTCGAACTCGGGATCTTCGCC 1 chrX:374173-374273 ( 32) CGATGGGGGTCGAACCCATAATCTTCTGA 1 chrII:405666-406240 ( 12) CGATGGGGGTCGAACCCATAATCTTCTGA 1 chrXI:162291-162744 ( 26) CGATGGGGGTCGAACCCATAATCTTCTGA 1 chrV:435510-436008 ( 49) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrIII:151030-151526 ( 62) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrXIII:480388-480838 ( 64) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrXVI:581841-582351 ( 54) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrXVI:860183-860678 ( 35) AGCCCGGAATCGAACCGGGGGCCCAACGA 1 chrVII:115322-115736 ( 70) ATAGGGGGCTCGAACCCCTGACATTTCGG 1 chrIV:359360-359994 ( 11) ATAGGGGGCTCGAACCCCTGACATTTCGG 1 chrXI:578696-579389 ( 34) ATAGGGGGCTCGAACCCCTGACATTTCGG 1 chrV:176897-177439 ( 18) TACGGGGAGTCGAACCCCGGTCTCCACGG 1 chrII:644958-645413 ( 69) TACGGGGAGTCGAACCCCGGTCTCCACGG 1 chrXV:300906-301488 ( 17) AGCTGGGAATTGAACCCAGGGCCTCTCGC 1 chrVI:101183-101724 ( 41) AGCTGGGAATTGAACCCAGGGCCTCTCGC 1 chrIV:884247-884645 ( 63) AGGTGGGGTTTGAACCCACGACGGTCGCG 1 chrII:266189-266686 ( 29) CAATCGGATTTGAACCGATGATCTCCACA 1 chrX:415715-415815 ( 18) GGACAGGAATTGAACCTGCAACCCTTCGA 1 chrXI:302701-303233 ( 72) GGACAGGAATTGAACCTGCAACCCTTCGA 1 chrXIII:379073-379596 ( 25) GGACAGGAATTGAACCTGCAACCCTTCGA 1 chrX:390837-390937 ( 12) AGGGGAGGTTCGAACTCTCGACCTTCAGA 1 chrXIII:572649-573147 ( 41) AGGGGAGGTTCGAACTCTCGACCTTCAGA 1 chrXVI:856726-857125 ( 65) AGTCCGGAATCGAACCGGAGACCTCTCCC 1 chrIV:410143-410774 ( 9) AGTCCGGAATCGAACCGGAGACCTCTCCC 1 chrVIII:466805-467293 ( 28) CTGCCAGAATTGAACTAGCGACCTTTGCA 1 chrIX:336089-336611 ( 55) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrIV:568702-569338 ( 31) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrX:204544-204644 ( 26) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrXIII:463360-463878 ( 22) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrVII:544406-544853 ( 4) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrXII:975778-976198 ( 51) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrVII:730967-731436 ( 25) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrXI:74437-74985 ( 2) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrVII:779414-779933 ( 30) GTACGAGAATCGAACCCGTGTCCCCACCT 1 chrXVI:622323-622838 ( 16) TTCTGTGGATCGAACACAGGACCTCCAGA 1 chrII:347400-347927 ( 46) CGCGCGAGTTCGAACCTCGCATCCTTCAG 1 chrXIV:725773-726582 ( 6) CGCGCGAGTTCGAACCTCGCATCCTTCAG 1 chrVIII:358286-358773 ( 5) TTCTGTGGATCGAACACAGGACCTCCAGA 1 chrIV:519650-519963 ( 43) CGCGCGAGTTCGAACCTCGCATCCTTCAA 1 chrXVI:744081-744574 ( 44) CTGTCAGAATTGAACTAACGACCTTTGCA 1 chrII:642853-643256 ( 9) CACTCAGGATCGAACTAAGGACCAACAGA 1 chrXVI:435654-436180 ( 32) CACTCAGGATCGAACTAAGGACCAACAGA 1 chrIV:437560-438099 ( 40) CTGCAGGACTCGAACCTGCGCGGGCAAAG 1 chrXIII:258947-259445 ( 18) CTGCAGGACTCGAACCTGCGCGGGCAAAG 1 chrIV:946143-946629 ( 30) GGGGGCGAGTCGAACGCCCGATCTCAAGA 1 chrII:226962-227351 ( 16) CTGCAGGACTCGAACCTGCGCGGGCAAAG 1 chrVII:700149-701257 ( 69) CCGCGGGGTTTGAACCCGCGCCTCCGAAG 1 chrIII:149706-150198 ( 55) CGCTCGGTTTCGATCCGAGGACATCAGGG 1 chrXVI:689383-689864 ( 39) CAGCAGGATTTGAACCAGCGCGGGCAGAG 1 chrV:288143-288732 ( 62) CAGCAGGATTTGAACCAGCGCGGGCAGAG 1 chrXV:274474-275019 ( 43) AGACAGGATTCGAACCTGCGCAGGTAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMSSGGRATCGAACCSVBGAYCTYCNGV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.9651 E= 5.7e-274 -65 143 -5 -155 -10 -385 114 -16 -3 131 5 -355 -1289 119 90 -55 -97 110 119 -1289 -23 -385 187 -355 -297 -1289 233 -1289 57 -1289 146 -455 61 -16 -54 -47 -1289 -1289 -1289 169 -1289 187 -1289 -3 -1289 -1289 239 -1289 169 -1289 -1289 -1289 167 -1289 -1289 -455 -1289 239 -1289 -1289 -355 190 -385 -31 -197 119 73 -85 -47 79 114 -355 -355 39 131 -31 -39 -227 192 -1289 117 -105 -227 -85 -455 163 -154 9 -255 160 39 -138 -355 31 -27 90 -297 100 -154 73 -47 139 -186 -47 -39 53 31 -31 -123 53 163 -1289 35 5 105 -455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMSSGGRATCGAACCSVBGAYCTYCNGV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 76 E= 5.7e-274 0.197368 0.513158 0.184211 0.105263 0.289474 0.013158 0.421053 0.276316 0.302632 0.473684 0.197368 0.026316 0.000000 0.434211 0.355263 0.210526 0.157895 0.407895 0.434211 0.000000 0.263158 0.013158 0.697368 0.026316 0.039474 0.000000 0.960526 0.000000 0.460526 0.000000 0.526316 0.013158 0.473684 0.171053 0.131579 0.223684 0.000000 0.000000 0.000000 1.000000 0.000000 0.697368 0.000000 0.302632 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.986842 0.000000 0.000000 0.013158 0.000000 1.000000 0.000000 0.000000 0.026316 0.710526 0.013158 0.250000 0.078947 0.434211 0.315789 0.171053 0.223684 0.328947 0.421053 0.026316 0.026316 0.250000 0.473684 0.250000 0.236842 0.039474 0.723684 0.000000 0.697368 0.092105 0.039474 0.171053 0.013158 0.592105 0.065789 0.328947 0.052632 0.578947 0.250000 0.118421 0.026316 0.236842 0.157895 0.578947 0.039474 0.381579 0.065789 0.513158 0.223684 0.500000 0.052632 0.223684 0.236842 0.276316 0.236842 0.250000 0.131579 0.276316 0.592105 0.000000 0.394737 0.197368 0.394737 0.013158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMSSGGRATCGAACCSVBGAYCTYCNGV MEME-1 regular expression -------------------------------------------------------------------------------- C[GAT][CA][CGT][GC][GA]G[GA][AT]T[CT]GAAC[CT][CG][GCA][GCT][GA]A[CT][CG][TC][TC][CAT][CTAG][GC][AG] -------------------------------------------------------------------------------- Time 354.16 secs. ******************************************************************************** ******************************************************************************** MOTIF WGSBBNYKTGGCSBAGTGGKWWARGSSHNC MEME-2 width = 30 sites = 57 llr = 966 E-value = 4.0e-141 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGSBBNYKTGGCSBAGTGGKWWARGSSHNC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 51:11211:2:::1a2:::13554:1:432 pos.-specific C 1:43424::::754::12:12:22245235 probability G 19522324:8a:32:8:6a41223754222 matrix T 41143334a::323::92:544:11:1231 bits 2.4 * 2.2 * * 1.9 * * 1.7 * *** ** * Relative 1.4 * **** ** * Entropy 1.2 * **** *** * (24.4 bits) 1.0 ** **** ***** *** 0.7 ** **** ***** *** 0.5 ** ****** ****** * *** * 0.2 ***** ************** ****** * 0.0 ------------------------------ Multilevel AGGTCGCGTGGCCCAGTGGTTAAAGGCACC consensus T CCTTTT TGT C GATCG CGCAG sequence GGA G T G TT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNYKTGGCSBAGTGGKWWARGSSHNC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIX:183283-183688 - 50 5.85e-13 AACAAATTCC TGGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:734610-734985 + 54 5.85e-13 CAACAAAGTT TGGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXIV:602098-602550 + 37 5.85e-13 CAGATAACAA TGGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:656821-657202 - 17 1.43e-11 ACAAGAAAAT TGGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXI:83986-84461 + 34 3.31e-11 AAAATTTGTA TGGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXIV:725773-726582 - 62 3.31e-11 ATAAATCTT TGGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrX:424274-424374 - 42 3.31e-11 TTAAATAAGA TGGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXVI:856726-857125 + 26 3.89e-11 CAACAAGATT CGGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrVII:205314-205782 + 22 5.33e-11 TACAAATAAG TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrXII:628081-628645 + 69 5.33e-11 AACAAATAAG TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC TG chrVII:422739-423525 + 9 5.33e-11 CAGATAAG TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrXII:962794-963265 - 48 8.42e-11 GTATTATCGA CGGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrX:523731-523831 - 22 9.77e-11 AAGAGATTAA AGGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXIII:258947-259445 - 65 1.31e-10 TTAGTA TGGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXII:167772-168267 - 28 1.31e-10 AATAGTCATA TGGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrV:438522-438963 + 7 1.74e-10 CAAATT AGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrX:378215-378315 + 5 1.74e-10 TAAT AGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:469260-469693 + 30 2.30e-10 AAGAAATAAT TGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:307966-308428 - 42 2.30e-10 AACAATTAAG TGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVII:823342-823696 + 12 2.30e-10 CCAATAAGAG TGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrIV:1150726-1151140 - 30 2.63e-10 AAAGTGTTTC AGTCCCAGTGGCCGAGTGGTTAAGGCGATG CCTGCTATTT chrVII:700149-701257 + 21 2.71e-09 ACAGATGAAT TGGTACTCTGGCCGAGTGGTCTAAGGCGTC AGGTCGAGGT chrX:517647-517747 - 37 4.68e-09 CATAAAAGTT AAGCGCCGTGGCGCAGTGGAAGCGCGCAGG GCTCATAACC chrX:58993-59093 - 7 4.68e-09 ATAAAATAGA AGCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAG chrV:99910-100336 + 59 4.68e-09 CAAGTTGGCT AAGCGCCGTGGCGCAGTGGAAGCGCGCAGG GCTCATAACC chrXV:353910-354316 - 22 5.77e-09 AACGGTTTAC TGCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrX:374173-374273 - 69 6.41e-09 GT AGCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrXI:162291-162744 - 63 6.41e-09 CAAATATT AGCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrXVI:775633-776033 - 25 7.86e-09 ATAATTCAAA AGCTCGTATGGCGCAGTGGTAGCGCAGCAG ATTGCAAATC chrII:642853-643256 - 46 7.86e-09 TGTAATAGAA AGCTCGTATGGCGCAGTGGTAGCGCAGCAG ATTGCAAATC chrXVI:435654-436180 - 69 7.86e-09 AA AGCTCGTATGGCGCAGTGGTAGCGCAGCAG ATTGCAAATC chrIV:83317-83802 + 38 9.62e-09 AAGTTCACTT AGCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVII:845254-846053 + 45 9.62e-09 ATAAATAACA AGCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrX:396539-396639 - 31 9.62e-09 ATCAAAAGTA AGCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVI:162020-162406 + 64 9.62e-09 CAAGAAAACA AGCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCA chrXVI:338528-339302 - 26 1.06e-08 CATGATTTAG CAGCGCCGTGGCGCAGTGGAAGCGCGCAGG GCTCATAACC chrXVI:744081-744574 + 6 1.57e-08 GTAAA AGCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrXVI:581841-582351 + 15 1.72e-08 TCAACAAAAG AGCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrIV:1352034-1353071 - 8 1.72e-08 CCAACGAAAT AGCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTT chrIV:1201530-1201994 + 37 1.72e-08 ACAAATAAAT AGCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrVII:1004010-1004433 + 44 1.89e-08 TTCAAGGGTT TGCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrXIV:374652-375119 + 33 2.28e-08 CAGAAAAATA AGCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrIII:149706-150198 + 17 2.50e-08 TTGTAATGTT GAGCGCCGTGGCGCAGTGGAAGCGCGCAGG GCTCATAACC chrI:138968-139372 + 31 3.58e-08 TCAATTAGTA CGGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrVIII:237748-238122 - 26 4.27e-08 ACAAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVI:157837-158206 - 8 4.27e-08 CATAAATAGA AGCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAA chrVIII:358286-358773 - 62 4.27e-08 CAAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrV:492203-492573 - 58 6.54e-08 TGAACATCCT ATTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrIII:127520-127907 + 52 7.10e-08 CAAGATAAAA TGACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrVII:115322-115736 + 8 1.35e-07 AGAACTC ATCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrXV:340106-340596 - 42 2.46e-07 CTCAAGATCT GTTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrII:36233-36851 + 59 6.05e-07 GCTGATTGGT CGCCCGGGTGATGCAGTTGCGGCCGGCCCT GGCCAATCAG chrXIV:631699-632129 - 25 6.46e-07 CAACTTCTAC CGGGCGTGTGGTCTAGAGGTATGATTCTCG CTTAGGGTGC chrIV:802536-803019 - 47 2.70e-06 CATGAATTGT CGGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrX:453374-453474 - 33 2.85e-06 CCACAAGGAC TGGAGAGGTGGTAGAACCGCTTCCGGTAAC ATCATCCCAT chrVII:882424-883943 - 69 2.85e-06 AC TGGAGAGGTGGTAGAACCGCTTCCGGTAAC ATCATCCCAT chrII:350580-351055 + 59 6.74e-06 ATCAATAAAA GGGTTTTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNYKTGGCSBAGTGGKWWARGSSHNC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIX:183283-183688 5.9e-13 49_[-2]_21 chrXII:734610-734985 5.9e-13 53_[+2]_17 chrXIV:602098-602550 5.9e-13 36_[+2]_34 chrXII:656821-657202 1.4e-11 16_[-2]_54 chrXI:83986-84461 3.3e-11 33_[+2]_37 chrXIV:725773-726582 3.3e-11 61_[-2]_9 chrX:424274-424374 3.3e-11 41_[-2]_29 chrXVI:856726-857125 3.9e-11 25_[+2]_45 chrVII:205314-205782 5.3e-11 21_[+2]_49 chrXII:628081-628645 5.3e-11 68_[+2]_2 chrVII:422739-423525 5.3e-11 8_[+2]_62 chrXII:962794-963265 8.4e-11 47_[-2]_23 chrX:523731-523831 9.8e-11 21_[-2]_49 chrXIII:258947-259445 1.3e-10 64_[-2]_6 chrXII:167772-168267 1.3e-10 27_[-2]_43 chrV:438522-438963 1.7e-10 6_[+2]_64 chrX:378215-378315 1.7e-10 4_[+2]_66 chrV:469260-469693 2.3e-10 29_[+2]_41 chrXI:307966-308428 2.3e-10 41_[-2]_29 chrVII:823342-823696 2.3e-10 11_[+2]_59 chrIV:1150726-1151140 2.6e-10 29_[-2]_41 chrVII:700149-701257 2.7e-09 20_[+2]_50 chrX:517647-517747 4.7e-09 36_[-2]_34 chrX:58993-59093 4.7e-09 6_[-2]_64 chrV:99910-100336 4.7e-09 58_[+2]_12 chrXV:353910-354316 5.8e-09 21_[-2]_49 chrX:374173-374273 6.4e-09 68_[-2]_2 chrXI:162291-162744 6.4e-09 62_[-2]_8 chrXVI:775633-776033 7.9e-09 24_[-2]_46 chrII:642853-643256 7.9e-09 45_[-2]_25 chrXVI:435654-436180 7.9e-09 68_[-2]_2 chrIV:83317-83802 9.6e-09 37_[+2]_33 chrVII:845254-846053 9.6e-09 44_[+2]_26 chrX:396539-396639 9.6e-09 30_[-2]_40 chrVI:162020-162406 9.6e-09 63_[+2]_7 chrXVI:338528-339302 1.1e-08 25_[-2]_45 chrXVI:744081-744574 1.6e-08 5_[+2]_65 chrXVI:581841-582351 1.7e-08 14_[+2]_56 chrIV:1352034-1353071 1.7e-08 7_[-2]_63 chrIV:1201530-1201994 1.7e-08 36_[+2]_34 chrVII:1004010-1004433 1.9e-08 43_[+2]_27 chrXIV:374652-375119 2.3e-08 32_[+2]_38 chrIII:149706-150198 2.5e-08 16_[+2]_54 chrI:138968-139372 3.6e-08 30_[+2]_40 chrVIII:237748-238122 4.3e-08 25_[-2]_45 chrVI:157837-158206 4.3e-08 7_[-2]_63 chrVIII:358286-358773 4.3e-08 61_[-2]_9 chrV:492203-492573 6.5e-08 57_[-2]_13 chrIII:127520-127907 7.1e-08 51_[+2]_19 chrVII:115322-115736 1.3e-07 7_[+2]_63 chrXV:340106-340596 2.5e-07 41_[-2]_29 chrII:36233-36851 6e-07 58_[+2]_12 chrXIV:631699-632129 6.5e-07 24_[-2]_46 chrIV:802536-803019 2.7e-06 46_[-2]_24 chrX:453374-453474 2.8e-06 32_[-2]_38 chrVII:882424-883943 2.8e-06 68_[-2]_2 chrII:350580-351055 6.7e-06 58_[+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNYKTGGCSBAGTGGKWWARGSSHNC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGSBBNYKTGGCSBAGTGGKWWARGSSHNC width=30 seqs=57 chrIX:183283-183688 ( 50) TGGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:734610-734985 ( 54) TGGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:602098-602550 ( 37) TGGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:656821-657202 ( 17) TGGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXI:83986-84461 ( 34) TGGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXIV:725773-726582 ( 62) TGGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrX:424274-424374 ( 42) TGGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXVI:856726-857125 ( 26) CGGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrVII:205314-205782 ( 22) TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXII:628081-628645 ( 69) TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrVII:422739-423525 ( 9) TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXII:962794-963265 ( 48) CGGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrX:523731-523831 ( 22) AGGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXIII:258947-259445 ( 65) TGGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXII:167772-168267 ( 28) TGGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrV:438522-438963 ( 7) AGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrX:378215-378315 ( 5) AGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrV:469260-469693 ( 30) TGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXI:307966-308428 ( 42) TGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrVII:823342-823696 ( 12) TGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrIV:1150726-1151140 ( 30) AGTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrVII:700149-701257 ( 21) TGGTACTCTGGCCGAGTGGTCTAAGGCGTC 1 chrX:517647-517747 ( 37) AAGCGCCGTGGCGCAGTGGAAGCGCGCAGG 1 chrX:58993-59093 ( 7) AGCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrV:99910-100336 ( 59) AAGCGCCGTGGCGCAGTGGAAGCGCGCAGG 1 chrXV:353910-354316 ( 22) TGCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrX:374173-374273 ( 69) AGCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrXI:162291-162744 ( 63) AGCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrXVI:775633-776033 ( 25) AGCTCGTATGGCGCAGTGGTAGCGCAGCAG 1 chrII:642853-643256 ( 46) AGCTCGTATGGCGCAGTGGTAGCGCAGCAG 1 chrXVI:435654-436180 ( 69) AGCTCGTATGGCGCAGTGGTAGCGCAGCAG 1 chrIV:83317-83802 ( 38) AGCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVII:845254-846053 ( 45) AGCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrX:396539-396639 ( 31) AGCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVI:162020-162406 ( 64) AGCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXVI:338528-339302 ( 26) CAGCGCCGTGGCGCAGTGGAAGCGCGCAGG 1 chrXVI:744081-744574 ( 6) AGCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrXVI:581841-582351 ( 15) AGCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIV:1352034-1353071 ( 8) AGCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIV:1201530-1201994 ( 37) AGCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrVII:1004010-1004433 ( 44) TGCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrXIV:374652-375119 ( 33) AGCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrIII:149706-150198 ( 17) GAGCGCCGTGGCGCAGTGGAAGCGCGCAGG 1 chrI:138968-139372 ( 31) CGGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrVIII:237748-238122 ( 26) AGCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVI:157837-158206 ( 8) AGCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVIII:358286-358773 ( 62) AGCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrV:492203-492573 ( 58) ATTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrIII:127520-127907 ( 52) TGACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrVII:115322-115736 ( 8) ATCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrXV:340106-340596 ( 42) GTTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrII:36233-36851 ( 59) CGCCCGGGTGATGCAGTTGCGGCCGGCCCT 1 chrXIV:631699-632129 ( 25) CGGGCGTGTGGTCTAGAGGTATGATTCTCG 1 chrIV:802536-803019 ( 47) CGGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrX:453374-453474 ( 33) TGGAGAGGTGGTAGAACCGCTTCCGGTAAC 1 chrVII:882424-883943 ( 69) TGGAGAGGTGGTAGAACCGCTTCCGGTAAC 1 chrII:350580-351055 ( 59) GGGTTTTATAGTGTAGTGGTTATCACTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNYKTGGCSBAGTGGKWWARGSSHNC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 7.615 E= 4.0e-141 56 -63 -186 25 -214 -1248 220 -255 -414 102 151 -255 -155 73 14 25 -214 95 37 3 -44 14 65 -23 -182 108 2 3 -114 -344 120 38 -1248 -1248 -1248 169 -97 -1248 214 -1248 -414 -1248 236 -1248 -1248 192 -1248 -14 -314 131 65 -68 -255 95 37 11 169 -1248 -1248 -1248 -97 -1248 214 -1248 -414 -112 -1248 153 -1248 14 160 -55 -1248 -1248 239 -1248 -214 -112 95 61 -5 -12 -112 50 56 -1248 -12 25 72 37 14 -314 38 -12 81 -182 -314 2 181 -155 -255 114 136 -314 -1248 136 95 -114 32 37 -27 -55 -23 65 -12 -23 -97 142 26 -155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNYKTGGCSBAGTGGKWWARGSSHNC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 57 E= 4.0e-141 0.456140 0.122807 0.052632 0.368421 0.070175 0.000000 0.877193 0.052632 0.017544 0.385965 0.543860 0.052632 0.105263 0.315789 0.210526 0.368421 0.070175 0.368421 0.245614 0.315789 0.228070 0.210526 0.298246 0.263158 0.087719 0.403509 0.192982 0.315789 0.140351 0.017544 0.438596 0.403509 0.000000 0.000000 0.000000 1.000000 0.157895 0.000000 0.842105 0.000000 0.017544 0.000000 0.982456 0.000000 0.000000 0.719298 0.000000 0.280702 0.035088 0.473684 0.298246 0.192982 0.052632 0.368421 0.245614 0.333333 1.000000 0.000000 0.000000 0.000000 0.157895 0.000000 0.842105 0.000000 0.017544 0.087719 0.000000 0.894737 0.000000 0.210526 0.578947 0.210526 0.000000 0.000000 1.000000 0.000000 0.070175 0.087719 0.368421 0.473684 0.298246 0.175439 0.087719 0.438596 0.456140 0.000000 0.175439 0.368421 0.508772 0.245614 0.210526 0.035088 0.403509 0.175439 0.333333 0.087719 0.035088 0.192982 0.666667 0.105263 0.052632 0.421053 0.491228 0.035088 0.000000 0.491228 0.368421 0.140351 0.385965 0.245614 0.157895 0.210526 0.263158 0.298246 0.175439 0.263158 0.157895 0.508772 0.228070 0.105263 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBBNYKTGGCSBAGTGGKWWARGSSHNC MEME-2 regular expression -------------------------------------------------------------------------------- [AT]G[GC][TCG][CTG][GTAC][CT][GT]TGG[CT][CG][CTG]AGT[GCT]G[TG][TA][AT][ACG][AG]G[GC][CG][ACT][CAT][CG] -------------------------------------------------------------------------------- Time 681.38 secs. ******************************************************************************** ******************************************************************************** MOTIF MCNCRCMCASACACCMCACCCACACAYYY MEME-3 width = 29 sites = 22 llr = 445 E-value = 2.5e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCNCRCMCASACACCMCACCCACACAYYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 424:513:717:73:517::29:7:6212 pos.-specific C 452a1759:519168471aa816:73364 probability G 213:412:332:::111:::::222:::: matrix T :12::1:::1::11:::1::::1::1535 bits 2.4 ** 2.2 * ** 1.9 * * ** 1.7 * * ** Relative 1.4 * * * * **** Entropy 1.2 * * * * * **** * (29.2 bits) 1.0 * * ** * ** * ***** * 0.7 * ********* ** ********** * 0.5 ** *********************** ** 0.2 ** ************************** 0.0 ----------------------------- Multilevel ACACACCCACACACCACACCCACACATCT consensus C G G A GG A C GG CCTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCNCRCMCASACACCMCACCCACACAYYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIII:5459-5660 + 51 6.92e-18 CACACCACAC CCACACCCACACACCACACCCACACACCC TAACACAATC chrXI:666615-666800 - 23 3.22e-17 CCCACACACC ACACACCCACACACCACACCCACACACCC ACACCACACC chrVIII:562351-562592 - 62 3.17e-15 ACACCCACAC CCACACCCACACACCACACCCACACACAC ACCCACACCC chrIV:14-209 + 55 6.70e-15 CACACCACAC CCACACCCACACACCACACCCACACCCAC ACACCACACA chrXIV:783726-784321 - 63 3.57e-13 CACACCCAC ACACCCACACACACCACACCCACACACTA CCCTAACACT chrIII:76-599 + 25 4.72e-13 CCACACACCC ACACCCACACACACCACACCCACACCACA CCCACACCCA chrXI:3-176 + 7 2.93e-12 CACACA CCACACCCACACACCACACCCACTACTCT AACCCTATTC chrX:391822-391922 + 72 5.37e-12 ATGGCAACGA GGTCGCACACGCCCCACACCCAGACCTCC chrIV:411268-411638 + 45 1.35e-10 CCCACACCCC GGGCACCCAAAGTCCCCACCCACACCACC AATACGTAAA chrXIII:302878-303047 - 39 1.49e-10 TCGCGCATAT GGGCGCCCACACCCCACACCCCTGGATTT TTTAAACGAG chrXI:83986-84461 - 71 4.54e-10 A ACTCGCGCGGACAACCGTCCAACAGATCT TAAGTCTGCC chrXII:962794-963265 + 12 4.54e-10 CGAGGTTCGA ACTCGCGCGGACAACCGTCCAACAGATCT TAAGTCTGCC chrX:424274-424374 + 6 4.54e-10 TTCGA ACTCGCGCGGACAACCGTCCAACAGATCT TAAGTCTGCC chrXV:968148-968377 - 47 1.94e-09 ATGCCTCGAG CAGCGCACGCCCACGCACCCCACGCTTTT GAGATCCAAG chrXII:710621-710874 + 21 4.26e-09 AAAAAAATAC CAACAAGCAGGAATCACACCCACGCATCT CATTTTGCGT chrIII:163476-163861 - 15 6.21e-09 CGTTAAATTA CCGCACCCACGCACCCAACCGCGGCTGTT TCTATGGCTG chrXV:216288-216682 + 38 1.58e-08 CCGCGCCTTC CTCAACCCAGGCACCGCCCCCAGGTAACC GTGCGCGATG chrIX:254247-254535 - 16 2.71e-08 CTCTTGATGG GAGCGGCGAGCTTCCGCACCCACACATTC TAATTGCCGC chrII:680360-682453 + 3 3.52e-08 CG CCCCATCCGCACTAGCACCCCATACCATA AATATTATCT chrVII:798546-800232 - 49 5.48e-08 GTGAAGGCAG AACCGGAAGAACCACCCACCAAGACACCT TCGTTAGAAA chrVIII:505836-506199 - 20 7.44e-08 CGAGACAATT ATGCATCCATACATTTCACCCAGACATTT TGTGTGCACG chrVIII:382688-383578 - 17 9.44e-08 AGACAGTGAC ATCCGAACATCCGAGACACCCATACATCA TGAAAATAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCNCRCMCASACACCMCACCCACACAYYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:5459-5660 6.9e-18 50_[+3]_21 chrXI:666615-666800 3.2e-17 22_[-3]_49 chrVIII:562351-562592 3.2e-15 61_[-3]_10 chrIV:14-209 6.7e-15 54_[+3]_17 chrXIV:783726-784321 3.6e-13 62_[-3]_9 chrIII:76-599 4.7e-13 24_[+3]_47 chrXI:3-176 2.9e-12 6_[+3]_65 chrX:391822-391922 5.4e-12 71_[+3] chrIV:411268-411638 1.3e-10 44_[+3]_27 chrXIII:302878-303047 1.5e-10 38_[-3]_33 chrXI:83986-84461 4.5e-10 70_[-3]_1 chrXII:962794-963265 4.5e-10 11_[+3]_60 chrX:424274-424374 4.5e-10 5_[+3]_66 chrXV:968148-968377 1.9e-09 46_[-3]_25 chrXII:710621-710874 4.3e-09 20_[+3]_51 chrIII:163476-163861 6.2e-09 14_[-3]_57 chrXV:216288-216682 1.6e-08 37_[+3]_34 chrIX:254247-254535 2.7e-08 15_[-3]_56 chrII:680360-682453 3.5e-08 2_[+3]_69 chrVII:798546-800232 5.5e-08 48_[-3]_23 chrVIII:505836-506199 7.4e-08 19_[-3]_52 chrVIII:382688-383578 9.4e-08 16_[-3]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCNCRCMCASACACCMCACCCACACAYYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCNCRCMCASACACCMCACCCACACAYYY width=29 seqs=22 chrXIII:5459-5660 ( 51) CCACACCCACACACCACACCCACACACCC 1 chrXI:666615-666800 ( 23) ACACACCCACACACCACACCCACACACCC 1 chrVIII:562351-562592 ( 62) CCACACCCACACACCACACCCACACACAC 1 chrIV:14-209 ( 55) CCACACCCACACACCACACCCACACCCAC 1 chrXIV:783726-784321 ( 63) ACACCCACACACACCACACCCACACACTA 1 chrIII:76-599 ( 25) ACACCCACACACACCACACCCACACCACA 1 chrXI:3-176 ( 7) CCACACCCACACACCACACCCACTACTCT 1 chrX:391822-391922 ( 72) GGTCGCACACGCCCCACACCCAGACCTCC 1 chrIV:411268-411638 ( 45) GGGCACCCAAAGTCCCCACCCACACCACC 1 chrXIII:302878-303047 ( 39) GGGCGCCCACACCCCACACCCCTGGATTT 1 chrXI:83986-84461 ( 71) ACTCGCGCGGACAACCGTCCAACAGATCT 1 chrXII:962794-963265 ( 12) ACTCGCGCGGACAACCGTCCAACAGATCT 1 chrX:424274-424374 ( 6) ACTCGCGCGGACAACCGTCCAACAGATCT 1 chrXV:968148-968377 ( 47) CAGCGCACGCCCACGCACCCCACGCTTTT 1 chrXII:710621-710874 ( 21) CAACAAGCAGGAATCACACCCACGCATCT 1 chrIII:163476-163861 ( 15) CCGCACCCACGCACCCAACCGCGGCTGTT 1 chrXV:216288-216682 ( 38) CTCAACCCAGGCACCGCCCCCAGGTAACC 1 chrIX:254247-254535 ( 16) GAGCGGCGAGCTTCCGCACCCACACATTC 1 chrII:680360-682453 ( 3) CCCCATCCGCACTAGCACCCCATACCATA 1 chrVII:798546-800232 ( 49) AACCGGAAGAACCACCCACCAAGACACCT 1 chrVIII:505836-506199 ( 20) ATGCATCCATACATTTCACCCAGACATTT 1 chrVIII:382688-383578 ( 17) ATCCGAACATCCGAGACACCCATACATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCNCRCMCASACACCMCACCCACACAYYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.2938 E= 2.5e-046 40 110 -7 -1110 -77 152 -48 -118 23 -7 52 -77 -276 232 -1110 -1110 69 -107 110 -1110 -176 193 -107 -176 -18 152 -7 -1110 -276 225 -207 -1110 123 -1110 52 -1110 -176 152 52 -176 114 -48 -7 -1110 -276 218 -207 -276 114 -48 -207 -118 -18 174 -1110 -176 -1110 210 -48 -276 69 93 -107 -276 -118 193 -48 -1110 123 -48 -1110 -118 -1110 239 -1110 -1110 -1110 239 -1110 -1110 -77 202 -207 -1110 155 -107 -1110 -1110 -1110 174 25 -118 123 -1110 25 -276 -276 193 -7 -276 104 52 -1110 -176 -77 52 -207 69 -176 163 -1110 4 -77 93 -1110 56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCNCRCMCASACACCMCACCCACACAYYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 22 E= 2.5e-046 0.409091 0.409091 0.181818 0.000000 0.181818 0.545455 0.136364 0.136364 0.363636 0.181818 0.272727 0.181818 0.045455 0.954545 0.000000 0.000000 0.500000 0.090909 0.409091 0.000000 0.090909 0.727273 0.090909 0.090909 0.272727 0.545455 0.181818 0.000000 0.045455 0.909091 0.045455 0.000000 0.727273 0.000000 0.272727 0.000000 0.090909 0.545455 0.272727 0.090909 0.681818 0.136364 0.181818 0.000000 0.045455 0.863636 0.045455 0.045455 0.681818 0.136364 0.045455 0.136364 0.272727 0.636364 0.000000 0.090909 0.000000 0.818182 0.136364 0.045455 0.500000 0.363636 0.090909 0.045455 0.136364 0.727273 0.136364 0.000000 0.727273 0.136364 0.000000 0.136364 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.181818 0.772727 0.045455 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.636364 0.227273 0.136364 0.727273 0.000000 0.227273 0.045455 0.045455 0.727273 0.181818 0.045455 0.636364 0.272727 0.000000 0.090909 0.181818 0.272727 0.045455 0.500000 0.090909 0.590909 0.000000 0.318182 0.181818 0.363636 0.000000 0.454545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCNCRCMCASACACCMCACCCACACAYYY MEME-3 regular expression -------------------------------------------------------------------------------- [AC]C[AG]C[AG]C[CA]C[AG][CG]ACA[CA]C[AC]CACCCA[CG][AG]C[AC][TC][CT][TC] -------------------------------------------------------------------------------- Time 996.98 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:332308-333081 3.75e-01 100 chrVIII:358286-358773 1.87e-09 4_[+1(1.63e-08)]_28_[-2(4.27e-08)]_\ 9 chrXIV:602098-602550 3.55e-09 36_[+2(5.85e-13)]_34 chrVII:277027-278697 3.15e-01 100 chrXI:261083-261998 1.45e-02 27_[-2(1.39e-05)]_43 chrI:181124-181472 1.64e-01 100 chrIV:1401268-1403394 9.05e-01 100 chrXVI:810575-811146 9.94e-01 100 chrXIII:511201-512015 9.79e-01 100 chrVII:544406-544853 5.37e-07 3_[+1(8.98e-09)]_8_[-2(3.11e-05)]_\ 30 chrVII:422739-423525 1.22e-07 8_[+2(5.33e-11)]_62 chrXI:379685-380210 9.59e-01 100 chrIV:600699-602383 4.09e-01 100 chrIII:137738-139029 5.48e-02 100 chrXVI:302667-304323 3.57e-01 100 chrIV:1075247-1075746 8.69e-10 31_[+1(6.26e-11)]_9_[-2(3.36e-05)]_\ 1 chrXI:551581-552751 3.96e-01 100 chrV:53522-54146 9.23e-01 100 chrXIV:374652-375119 5.37e-05 32_[+2(2.28e-08)]_38 chrIV:929276-930189 1.79e-02 21_[+2(3.62e-05)]_49 chrXII:426923-427552 9.94e-01 100 chrII:162989-164106 2.28e-01 100 chrII:326461-327073 3.71e-01 100 chrXI:490727-491362 9.77e-07 11_[-1(1.05e-10)]_60 chrXV:979725-981243 5.65e-01 100 chrVII:479141-482963 3.02e-01 100 chrXV:504988-505481 1.33e-01 100 chrXII:201657-202715 3.17e-01 100 chrVII:876167-878132 3.60e-01 100 chrXV:663522-664095 2.33e-10 59_[+1(1.14e-12)]_12 chrXIII:123089-124226 3.34e-02 100 chrV:270402-270875 9.16e-01 100 chrXVI:519806-520526 1.48e-02 28_[+3(7.24e-05)]_43 chrII:592267-593462 9.87e-01 100 chrIV:802536-803019 4.07e-10 9_[+1(7.14e-11)]_8_[-2(2.70e-06)]_\ 24 chrXV:444608-446253 8.81e-01 100 chrII:167573-169639 4.52e-02 6_[+3(7.02e-05)]_65 chrXIII:671915-674791 9.59e-01 100 chrVII:255213-255633 7.47e-01 100 chrXII:783876-784523 8.54e-01 100 chrVIII:411012-411704 9.66e-01 100 chrX:607909-608009 5.74e-01 100 chrVII:405461-405819 4.96e-01 100 chrX:73368-73468 8.92e-02 100 chrXII:919413-921514 3.18e-01 100 chrXIII:251805-252974 7.95e-01 100 chrXIV:61960-64532 4.14e-01 100 chrXIV:546559-547446 6.89e-01 100 chrVII:531265-532587 5.26e-01 100 chrXVI:744081-744574 2.09e-09 5_[+2(1.57e-08)]_8_[-1(3.08e-08)]_\ 28 chrXIII:19027-20528 2.43e-01 100 chrIX:248610-249004 9.68e-01 100 chrXV:353910-354316 5.86e-06 21_[-2(5.77e-09)]_49 chrXIII:225162-226695 7.96e-01 100 chrVII:1057772-1058771 2.39e-01 100 chrXI:666615-666800 3.84e-13 22_[-3(3.22e-17)]_9_[-3(4.72e-13)]_\ 11 chrX:424274-424374 4.99e-14 5_[+3(4.54e-10)]_7_[-2(3.31e-11)]_\ 29 chrVII:227250-228395 9.13e-01 100 chrXVI:121856-125336 7.81e-03 20_[+2(3.62e-05)]_50 chrVII:110259-110791 9.43e-01 100 chrXI:382211-382447 7.06e-03 39_[+3(4.14e-05)]_32 chrXII:875043-876049 9.14e-01 100 chrI:65838-67842 1.31e-01 100 chrXI:141656-142764 7.40e-02 100 chrV:431018-432050 9.10e-01 100 chrIV:1201530-1201994 6.63e-05 36_[+2(1.72e-08)]_34 chrVII:398506-400155 5.13e-01 100 chrXIII:302878-303047 1.52e-06 38_[-3(1.49e-10)]_33 chrXIII:886985-889707 2.36e-03 38_[-2(1.51e-05)]_32 chrIII:90848-91109 4.74e-02 9_[-1(5.92e-05)]_62 chrXII:592321-592815 1.40e-02 6_[+1(4.26e-05)]_65 chrVIII:132676-133112 9.26e-01 100 chrXI:259142-259970 7.51e-01 100 chrXII:47489-49246 1.86e-02 [-3(1.88e-05)]_71 chrXII:1017678-1019562 4.67e-01 100 chrIII:163476-163861 1.54e-05 14_[-3(6.21e-09)]_57 chrV:441792-442690 5.19e-02 100 chrXII:506217-507503 8.36e-01 100 chrIV:1352034-1353071 9.29e-05 7_[-2(1.72e-08)]_63 chrXII:348089-348715 9.61e-01 100 chrVII:401084-401620 5.96e-01 100 chrXVI:404509-407771 3.96e-01 100 chrIII:168075-168552 1.59e-06 43_[+1(7.14e-11)]_28 chrXIV:560142-560923 5.01e-01 100 chrVII:930832-931645 3.37e-01 100 chrXII:498313-500092 7.41e-01 100 chrII:87915-88578 9.78e-01 100 chrXII:962794-963265 6.21e-14 11_[+3(4.54e-10)]_7_[-2(8.42e-11)]_\ 23 chrXV:779709-781002 3.43e-01 100 chrVIII:296832-297238 2.09e-01 100 chrVII:319233-320151 4.61e-01 100 chrXI:162291-162744 1.04e-12 25_[+1(1.36e-10)]_8_[-2(6.41e-09)]_\ 8 chrXV:909238-911623 7.07e-02 100 chrIV:433941-434979 8.68e-01 100 chrXV:87390-88579 2.57e-02 9_[-2(1.58e-05)]_61 chrVII:823342-823696 1.05e-16 11_[+2(2.30e-10)]_10_[-1(1.14e-12)]_\ 20 chrXVI:108737-114502 2.00e-02 100 chrXII:636669-639946 8.28e-02 100 chrXVI:794480-796160 6.32e-01 100 chrX:120318-120418 2.96e-02 100 chrVI:226399-226926 9.88e-01 100 chrXII:241663-243515 9.89e-01 100 chrXVI:572175-572632 8.11e-01 100 chrIV:118443-118876 9.91e-01 100 chrXII:448522-449052 8.04e-01 100 chrIII:81696-82665 7.16e-01 100 chrI:71636-73860 4.10e-01 100 chrXVI:879488-880580 1.15e-01 100 chrXIII:91343-92113 1.79e-01 100 chrXIV:783726-784321 3.50e-09 62_[-3(3.57e-13)]_9 chrXIII:162960-164363 9.98e-01 100 chrV:51798-53213 5.08e-01 100 chrVI:269396-270005 7.38e-01 100 chrVII:316714-317399 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chrXV:853985-854778 2.10e-01 100 chrIV:667734-668252 5.59e-09 69_[+1(2.71e-12)]_2 chrXV:160324-160729 5.98e-01 100 chrIV:355162-356999 3.33e-01 100 chrV:67137-68952 4.78e-01 100 chrX:745079-745179 1.83e-01 100 chrXII:628081-628645 3.95e-07 68_[+2(5.33e-11)]_2 chrXV:446542-446739 6.13e-01 100 chrX:396539-396639 2.44e-05 30_[-2(9.62e-09)]_40 chrIV:992720-993261 7.70e-01 100 chrV:435510-436008 3.19e-08 48_[+1(1.54e-10)]_23 chrIV:216078-218100 2.48e-01 100 chrX:204544-204644 1.25e-05 25_[-1(8.98e-09)]_46 chrIV:914352-914823 8.93e-01 100 chrVII:641203-641491 2.97e-01 100 chrIV:1488095-1489951 5.35e-01 100 chrXI:430802-431642 1.25e-01 17_[-2(9.40e-05)]_53 chrX:157474-157574 1.83e-01 100 chrIX:323547-324389 1.24e-01 100 chrIX:316116-318268 3.03e-01 100 chrVII:787376-788727 8.22e-01 100 chrIV:555419-556468 6.79e-01 100 chrXII:360116-361031 3.75e-01 100 chrX:155978-156078 9.35e-02 100 chrIV:1094996-1095651 7.52e-01 100 chrXII:424241-424414 3.10e-01 100 chrVII:122051-122988 9.63e-01 100 chrXIV:569668-570086 4.27e-09 45_[+1(2.71e-12)]_26 chrV:61035-62161 4.34e-01 100 chrXI:364509-365203 6.59e-01 100 chrXI:83986-84461 6.01e-14 33_[+2(3.31e-11)]_7_[-3(4.54e-10)]_\ 1 chrXII:515294-516825 5.00e-02 20_[-3(7.24e-05)]_51 chrVII:649645-650714 1.51e-01 100 chrVIII:34391-36178 1.44e-02 100 chrXIV:499175-500759 2.51e-01 100 chrIX:257376-258182 9.05e-01 100 chrXV:216288-216682 5.19e-06 37_[+3(1.58e-08)]_34 chrXVI:819329-819878 4.27e-09 14_[-1(2.71e-12)]_57 chrVII:878555-879051 4.30e-03 33_[-2(3.91e-06)]_37 chrIV:1359197-1361204 6.43e-01 100 chrXV:253812-254720 4.72e-01 100 chrVII:364869-366697 8.89e-01 100 chrXII:809728-815726 8.90e-01 100 chrVIII:103482-105469 2.98e-01 100 chrIII:107045-107852 9.93e-01 100 chrIV:769513-770032 5.94e-02 100 chrV:443024-443365 4.27e-09 63_[+1(2.71e-12)]_8 chrXV:594304-594696 9.98e-01 100 chrX:453374-453474 2.85e-03 32_[-2(2.85e-06)]_38 chrX:651878-651978 2.87e-02 100 chrIV:1016971-1017503 9.15e-10 25_[+1(6.26e-11)]_46 chrXIII:420316-420898 2.33e-10 36_[+1(1.14e-12)]_35 chrXVI:699927-700708 7.85e-01 100 chrXVI:653957-655368 5.86e-01 100 chrVII:648752-649361 4.45e-01 100 chrX:58993-59093 5.98e-05 6_[-2(4.68e-09)]_64 chrVI:167056-167676 9.84e-01 100 chrXV:159210-160143 7.51e-02 100 chrXIII:807874-808543 8.66e-01 100 chrV:85121-86974 7.45e-01 100 chrVIII:144401-146457 4.54e-01 100 chrIV:578832-580769 7.38e-01 100 chrXV:619635-624371 6.54e-01 100 chrIX:254247-254535 5.13e-05 15_[-3(2.71e-08)]_56 chrX:390837-390937 1.83e-08 11_[+1(1.81e-09)]_9_[-2(8.52e-06)]_\ 21 chrX:415715-415815 2.04e-06 17_[+1(1.64e-09)]_54 chrXVI:378665-378981 1.59e-01 100 chrXV:281978-282906 6.64e-01 100 chrII:45604-46859 3.37e-01 100 chrXII:440435-441440 1.88e-02 100 chrIV:541198-541973 9.03e-01 100 chrIII:227708-228544 4.67e-01 100 chrIV:14-209 5.64e-11 54_[+3(6.70e-15)]_17 chrIV:619664-620196 7.02e-01 100 chrVII:845254-846053 2.44e-05 44_[+2(9.62e-09)]_26 chrXI:157894-159615 6.48e-01 100 chrXII:231830-234231 3.63e-01 100 chrVIII:147591-148789 9.92e-01 100 chrXII:656821-657202 3.84e-08 16_[-2(1.43e-11)]_54 chrXIV:715846-716631 9.93e-01 100 chrXIII:288061-289951 3.60e-01 100 chrIV:720998-721586 6.54e-01 100 chrV:469260-469693 1.05e-16 29_[+2(2.30e-10)]_10_[-1(1.14e-12)]_\ 2 chrV:69105-69325 1.10e-03 6_[-3(1.16e-05)]_65 chrVI:54609-54873 5.24e-01 100 chrVI:191153-191774 8.78e-01 100 chrXV:114363-114536 8.40e-01 100 chrIV:489728-491256 3.22e-01 100 chrXI:219581-220139 9.74e-01 100 chrIX:231303-232459 7.10e-01 100 chrXV:722944-724661 2.39e-01 100 chrXIV:756195-756593 7.33e-01 100 chrXVI:172921-174102 9.70e-01 100 chrX:381584-381684 2.65e-01 100 chrX:531615-531715 4.55e-01 100 chrX:517647-517747 2.31e-06 36_[-2(4.68e-09)]_34 chrI:166166-166617 5.60e-01 100 chrV:122138-123016 7.96e-03 70_[+1(3.14e-05)]_1 chrIV:491467-492703 6.84e-03 31_[-2(9.40e-05)]_39 chrIV:437560-438099 7.03e-05 39_[-1(5.62e-08)]_32 chrIV:568702-569338 1.20e-05 30_[-1(8.98e-09)]_41 chrXVI:451692-453200 2.38e-01 100 chrXII:710621-710874 3.45e-05 20_[+3(4.26e-09)]_51 chrIX:370225-370839 5.67e-01 100 chrVII:328383-329084 6.77e-01 100 chrXII:369649-370295 4.29e-01 100 chrII:9452-9940 9.84e-01 100 chrXIV:631699-632129 2.12e-04 24_[-2(6.46e-07)]_46 chrXVI:718344-719636 8.89e-01 100 chrVII:115322-115736 4.12e-11 7_[+2(1.35e-07)]_32_[-1(3.18e-10)]_\ 2 chrXIII:352083-352732 6.67e-01 100 chrVI:82450-84444 9.67e-01 100 chrIV:1150726-1151140 1.04e-06 29_[-2(2.63e-10)]_41 chrXII:368674-369452 4.09e-01 100 chrXV:968148-968377 1.95e-06 46_[-3(1.94e-09)]_25 chrV:269221-269906 3.79e-02 100 chrXVI:432582-434392 8.91e-02 100 chrII:165082-165423 4.58e-02 15_[+3(8.41e-05)]_56 chrXII:897683-899733 5.17e-01 100 chrXVI:822756-824215 3.07e-01 100 chrXI:617702-619277 4.23e-01 100 chrVIII:237748-238122 5.48e-05 25_[-2(4.27e-08)]_45 chrIX:183283-183688 6.05e-18 10_[+1(2.71e-12)]_10_[-2(5.85e-13)]_\ 21 chrIX:325736-326153 9.19e-01 100 chrIX:336089-336611 1.66e-05 54_[+1(8.98e-09)]_17 chrXIV:229585-230800 1.28e-01 100 chrX:227751-227851 4.27e-01 100 chrXVI:55822-56432 1.70e-01 100 chrXI:67819-68008 5.64e-02 68_[-3(4.14e-05)]_3 chrXV:678041-678386 3.30e-03 23_[-3(9.32e-06)]_48 chrV:362156-362457 6.98e-01 100 chrVII:205314-205782 1.22e-07 21_[+2(5.33e-11)]_49 chrXV:866455-868120 2.05e-01 100 chrVII:555058-557484 3.21e-01 100 chrXV:758971-759531 5.68e-01 100 chrXIV:330779-331098 8.54e-01 100 chrV:270056-270249 2.38e-01 100 chrXIV:493689-495719 3.52e-01 100 chrXVI:692845-695035 2.39e-01 100 chrX:391822-391922 7.76e-09 40_[+3(5.16e-05)]_2_[+3(5.37e-12)] chrIV:83317-83802 7.36e-06 37_[+2(9.62e-09)]_33 chrVII:648166-648482 9.25e-01 100 chrXVI:208590-210480 8.49e-01 100 chrXIV:241401-241867 3.82e-01 100 chrXII:523881-524216 5.48e-01 100 chrXI:163333-164494 8.25e-01 100 chrVI:63992-65370 8.24e-01 100 chrXIII:650833-652943 5.23e-01 100 chrXIII:747357-748146 8.23e-01 100 chrXV:841572-842890 8.05e-01 100 chrXV:300906-301488 4.16e-07 16_[-1(4.01e-10)]_55 chrXIII:504902-505231 4.45e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************