******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CIN5/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:28566-28928 1.0000 100 chrI:71770-74180 1.0000 100 chrI:81942-82313 1.0000 100 chrI:138952-139369 1.0000 100 chrI:142131-143573 1.0000 100 chrI:166170-167048 1.0000 100 chrI:181124-181473 1.0000 100 chrI:182193-183240 1.0000 100 chrII:9457-10042 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100 chrXV:282704-282928 1.0000 100 chrXV:287851-288422 1.0000 100 chrXV:300893-301812 1.0000 100 chrXV:340133-340613 1.0000 100 chrXV:348032-349416 1.0000 100 chrXV:353787-354311 1.0000 100 chrXV:367648-367909 1.0000 100 chrXV:382996-383488 1.0000 100 chrXV:423780-424493 1.0000 100 chrXV:438432-439364 1.0000 100 chrXV:444630-446289 1.0000 100 chrXV:464277-465286 1.0000 100 chrXV:487430-487768 1.0000 100 chrXV:504959-505492 1.0000 100 chrXV:571443-572132 1.0000 100 chrXV:594309-594689 1.0000 100 chrXV:639126-639475 1.0000 100 chrXV:663505-664196 1.0000 100 chrXV:671106-671857 1.0000 100 chrXV:678032-679156 1.0000 100 chrXV:679337-679528 1.0000 100 chrXV:710119-710501 1.0000 100 chrXV:758950-759541 1.0000 100 chrXV:778610-779477 1.0000 100 chrXV:779708-781013 1.0000 100 chrXV:832345-832865 1.0000 100 chrXV:853993-854747 1.0000 100 chrXV:866531-868094 1.0000 100 chrXV:881640-882451 1.0000 100 chrXV:892035-892583 1.0000 100 chrXV:904069-904670 1.0000 100 chrXV:911992-912390 1.0000 100 chrXV:925236-925393 1.0000 100 chrXV:968137-968420 1.0000 100 chrXV:976379-976714 1.0000 100 chrXV:978824-981314 1.0000 100 chrXV:1003960-1004987 1.0000 100 chrXV:1027885-1029651 1.0000 100 chrXV:1053835-1054724 1.0000 100 chrXVI:17008-17403 1.0000 100 chrXVI:55858-56428 1.0000 100 chrXVI:75495-76731 1.0000 100 chrXVI:172881-174090 1.0000 100 chrXVI:188356-189242 1.0000 100 chrXVI:209958-210564 1.0000 100 chrXVI:239164-239968 1.0000 100 chrXVI:280588-282959 1.0000 100 chrXVI:297484-298461 1.0000 100 chrXVI:302661-304291 1.0000 100 chrXVI:338612-339230 1.0000 100 chrXVI:377947-378471 1.0000 100 chrXVI:378650-378996 1.0000 100 chrXVI:404504-406023 1.0000 100 chrXVI:406200-407888 1.0000 100 chrXVI:431780-432064 1.0000 100 chrXVI:432286-434299 1.0000 100 chrXVI:435620-436277 1.0000 100 chrXVI:519951-520530 1.0000 100 chrXVI:559990-560517 1.0000 100 chrXVI:572181-572772 1.0000 100 chrXVI:581699-582390 1.0000 100 chrXVI:590971-591324 1.0000 100 chrXVI:608212-608590 1.0000 100 chrXVI:622317-622863 1.0000 100 chrXVI:678575-679424 1.0000 100 chrXVI:689333-689843 1.0000 100 chrXVI:699842-700677 1.0000 100 chrXVI:731639-733222 1.0000 100 chrXVI:744064-744635 1.0000 100 chrXVI:768106-769492 1.0000 100 chrXVI:775645-776035 1.0000 100 chrXVI:785593-785892 1.0000 100 chrXVI:794255-796070 1.0000 100 chrXVI:810574-811329 1.0000 100 chrXVI:819326-819940 1.0000 100 chrXVI:829017-829342 1.0000 100 chrXVI:856722-857128 1.0000 100 chrXVI:860163-860692 1.0000 100 chrXVI:880104-880547 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CIN5/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CIN5/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CIN5/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 597 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59700 N= 597 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CIN5/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF BSGGRWTCGAACCSVKGAYCTYMN MEME-1 width = 24 sites = 92 llr = 1581 E-value = 7.3e-305 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVKGAYCTYMN MEME-1 Description -------------------------------------------------------------------------------- Simplified A :12:64:::aa::13:26::1143 pos.-specific C 54:::1:7:::a7532:1563553 probability G 357a42::a::::445811311:3 matrix T 2::::3a3::::21:3:2315312 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * ** * Relative 1.4 * ****** * Entropy 1.2 * ******* * (24.8 bits) 1.0 **** ******* * 0.7 ***** ******** * ** 0.5 ***** *********** ** ** 0.2 ***** ***************** 0.0 ------------------------ Multilevel CGGGAATCGAACCCGGGACCTCCA consensus GCA GT T TGCTATTGCTAC sequence T AC G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVKGAYCTYMN MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrIII:123354-123798 + 60 2.00e-14 TGGGGCGAGC CGGGACTCGAACCCGGGACCTCCC GCACCCTAAG chrXVI:880104-880547 + 30 1.11e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCG CGTTATTAGC chrXIV:569675-570095 + 41 1.11e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCG CGTTATTAGC chrVIII:134082-134721 - 9 1.11e-11 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCG GATCAAAA chrVII:738847-739512 - 34 1.11e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCG CGTTATTAGC chrV:249769-250894 - 44 1.11e-11 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCG GATCAAAACC chrIX:183281-183714 + 2 1.11e-11 A GCGGGATCGAACCGCTGATCCCCG CGTTATTAGC chrIV:802537-803013 + 15 1.11e-11 GAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCG GATCAAAACC chrIV:667766-668246 + 60 1.11e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCG CGTTATTAGC chrIII:168096-168550 + 37 1.11e-11 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCG GATCAAAACC chrII:197263-197847 - 30 1.11e-11 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCG CGTTATTAGC chrV:130806-131377 + 50 5.71e-11 TAGGTCTTAC CCGGATTCGAACCGGGGTTGTTCG GATCAAAACC chrXIV:95998-96473 + 65 1.10e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCCCAC CTTGGAAGGG chrVII:779386-779931 - 47 1.10e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCCCAC CTTGGAAGGG chrXVI:860163-860692 - 40 1.75e-10 CTGCGCAAGC CCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrXV:281971-282505 - 14 1.75e-10 ATGCGCAAGC CCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrXV:226430-226899 + 6 1.75e-10 CAAGC CCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrX:531581-532214 - 19 1.75e-10 CTGCGCAAGC CCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrVII:845326-846020 - 64 1.75e-10 TTGCGCAAGC CCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrIV:83348-83810 - 57 1.75e-10 TTGCGCAAGC CCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrXVI:856722-857128 - 67 2.36e-10 ATGGACGAGT CCGGAATCGAACCGGAGACCTCTC CCATGCTAAG chrXIII:320982-321325 + 53 2.36e-10 ATGGACGAGT CCGGAATCGAACCGGAGACCTCTC CCATGCTAAG chrVII:774123-774617 - 69 2.36e-10 GGACGAGT CCGGAATCGAACCGGAGACCTCTC CCATGCTAAG chrV:311724-312303 + 69 2.36e-10 TTGGACGCAA CCGGAATCGAACCGATGACCTCTT CCTTGCAA chrIV:488486-489192 + 17 2.36e-10 CTGATCCAAC CGAGGTTCGAACTCGGGATCTTCG CCGTGTAAAG chrII:326481-327200 + 11 2.36e-10 TTGATCCAAC CGAGGTTCGAACTCGGGATCTTCG CCGTGTAAAG chrXIII:290473-291198 - 55 2.73e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCAC GGTGAAAGCG chrV:487083-487594 + 52 2.73e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCAC GGTGAAAGCG chrV:354682-355342 - 11 2.73e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCAC GGTGAAAGCG chrV:176895-177436 - 23 2.73e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCAC GGTGAAAGCG chrIV:1016952-1017504 + 38 2.73e-10 ACTCCGAAGC GGGGAGTCGAACCCCGGTCTCCAC GGTGAGAACG chrII:644954-645441 - 59 2.73e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCAC GGTGAAAGCG chrIV:1256813-1257279 + 21 3.16e-10 ATGCGGAAGC CGGGAATCGAACCCGGGCCCCATG CTTGGGAAGC chrIV:1075299-1075755 + 4 5.54e-10 AAC CGAGGATCGAACTCGGGACCTTTG CCGTGTGAAG chrXIII:807988-808551 + 36 6.34e-10 AAGGTCCCAC CCGGATTCGAACTGGGGTTGTTCG GATCAGAACC chrXV:663505-664196 + 21 8.27e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCT GCGTGTTAAG chrXIII:586392-586899 + 50 8.27e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCT GCGTGTTAAG chrXIII:420327-420864 + 52 8.27e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCT GCGTGTTAAG chrVII:823343-823705 - 49 8.27e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCT GCGTGTTAAG chrVII:412036-412588 + 41 8.27e-10 TTGATTTCGC CCAGGATCGAACTGGGGACGTTCT GCGTGTTAAG chrXV:353787-354311 + 51 1.56e-09 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCA CATTACTAGT chrXIV:104601-105100 - 45 1.56e-09 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCA CATTACTAGT chrX:58749-59427 + 71 1.56e-09 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCA CATTAC chrVIII:115868-116426 + 19 1.56e-09 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCA CATTACTAGT chrIX:174881-175226 - 68 1.56e-09 TGCTTCCAA TCGGATTTGAACCGATGATCTCCA CATTACTAGT chrII:266168-266702 - 33 1.56e-09 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCA CATTACTAGT chrXIII:195943-196307 + 2 2.00e-09 C TGGGAATTGAACCCAGGGCCTCTC GCATGCTTTG chrXIII:480425-480826 + 55 2.25e-09 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTAT GATTAAGAGT chrX:414732-415255 - 63 2.25e-09 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTAT GATTAAGAGT chrIX:300015-300476 + 42 2.25e-09 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTAT GATTAAGAGT chrIII:151114-151514 + 29 2.25e-09 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTAT GATTAAGAGT chrIV:884253-884651 - 59 2.85e-09 GTGCTCGAGG TGGGGTTTGAACCCACGACGGTCG CGTTGCTTTT chrXIII:747662-748146 + 47 6.94e-09 ACACTCACGA TGGGGGTCGAACCCATAATCTTCT GATTAGAAGT chrX:374199-374889 + 21 6.94e-09 GCACTCACGA TGGGGGTCGAACCCATAATCTTCT GATTAGAAGT chrVII:828486-828979 + 50 6.94e-09 GCACTCACGA TGGGGGTCGAACCCATAATCTTCT GATTAGAAGT chrIV:568589-569340 - 7 6.94e-09 GCACTCACGA TGGGGGTCGAACCCATAATCTTCT GATTAG chrXI:578735-579329 - 46 1.16e-08 ACTCCTCATA GGGGGCTCGAACCCCTGACATTTC GGTATCCTTG chrXVI:622317-622863 + 9 2.52e-08 GCGAATTC TGTGGATCGAACACAGGACCTCCA GATAACTTGA chrXVI:559990-560517 + 4 2.52e-08 TTC TGTGGATCGAACACAGGACCTCCA GATAACTTGA chrXIII:572601-573218 + 33 2.52e-08 GTGCTCCAGG GGAGGTTCGAACTCTCGACCTTCA GATTATGAGA chrX:422677-423236 - 71 2.52e-08 TCCAGG GGAGGTTCGAACTCTCGACCTTCA GATTATGAGA chrIV:1095144-1095656 + 29 2.52e-08 ATGCGAACTC TGTGGATCGAACACAGGACCTCCA GATATCTTGA chrXIII:463324-463888 - 37 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCA CGCGACAAGC chrXII:426894-427514 - 17 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCA CGCGACAAGC chrX:204541-205047 - 30 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCA CGCGACAAGC chrVII:531285-532091 - 11 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCA CGCGACAAGC chrIX:336078-336628 + 55 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCA CGCGACAAGC chrII:405679-406299 - 60 5.57e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCA CGCGACAAGC chrXIV:725706-726581 + 50 8.39e-08 CTGAAGGATG CGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrXI:490726-491270 - 60 8.39e-08 TCTTCCCCGC CAGGACTTGAACCTGGAATCTTCT GGTTCGTAGC chrXI:83965-84578 - 38 8.39e-08 CTGAAGGATG CGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrVI:167252-167697 - 69 8.39e-08 CTCCCGGG GGCGAGTCGAACGCCCGATCTCAA GATTTCGTAG chrV:492196-492566 + 30 8.39e-08 CCTTCCCCGC CAGGACTTGAACCTGGAATCTTCT GGTTCGTAGC chrIV:946143-946606 - 44 8.39e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAA GATTTCGTAG chrIV:519651-519954 - 42 8.39e-08 TTGAAGGATG CGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrII:347415-347908 - 43 8.39e-08 CTGAAGGATG CGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrXIII:258981-259383 + 35 9.83e-08 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAA AGCCCAAAAG chrXII:167704-168237 + 33 9.83e-08 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAA AGCCCAAAAG chrII:226967-227369 - 6 9.83e-08 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAA AGCCC chrXIII:378928-379734 + 31 1.06e-07 TTGAAACGGA CAGGAATTGAACCTGCAACCCTTC GATTGCAATC chrX:415652-416245 + 42 1.06e-07 TTGAAACGGA CAGGAATTGAACCTGCAACCCTTC GATTGCAATC chrXVI:689333-689843 - 76 2.07e-07 G CAGGATTTGAACCAGCGCGGGCAG AGCCCAACAG chrV:288173-288751 + 40 2.07e-07 ACGACACCAG CAGGATTTGAACCAGCGCGGGCAG AGCCCAACAG chrIII:227732-228241 - 74 2.07e-07 CAG CAGGATTTGAACCAGCGCGGGCAG AGCCCAAGAG chrXIV:632430-632904 - 23 2.38e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGC GATTAACAGT chrXII:975750-976191 + 72 2.38e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGC GATTA chrVII:730953-731380 - 62 2.38e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGC GATTAACAGT chrXVI:435620-436277 + 4 3.12e-07 CAC TCAGGATCGAACTAAGGACCAACA GATTTGCAAT chrXVI:744064-744635 - 24 4.05e-07 TTGCCACCTG TCAGAATTGAACTAACGACCTTTG CATTACAAGT chrX:517643-518079 + 11 5.54e-07 TTAGCGCCGC TCGGTTTCGATCCGAGGACATCAG GGTTATGAGC chrIII:149712-150167 - 70 5.54e-07 GCGCCGC TCGGTTTCGATCCGAGGACATCAG GGTTATGAGC chrXVI:829017-829342 - 26 1.16e-06 ATACTTAATC CGAGATTCGGACCCCTAGTGACAG AATTAACCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVKGAYCTYMN MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123354-123798 2e-14 59_[+1]_17 chrXVI:880104-880547 1.1e-11 29_[+1]_47 chrXIV:569675-570095 1.1e-11 40_[+1]_36 chrVIII:134082-134721 1.1e-11 8_[-1]_68 chrVII:738847-739512 1.1e-11 33_[-1]_43 chrV:249769-250894 1.1e-11 43_[-1]_33 chrIX:183281-183714 1.1e-11 1_[+1]_75 chrIV:802537-803013 1.1e-11 14_[+1]_62 chrIV:667766-668246 1.1e-11 59_[+1]_17 chrIII:168096-168550 1.1e-11 36_[+1]_40 chrII:197263-197847 1.1e-11 29_[-1]_47 chrV:130806-131377 5.7e-11 49_[+1]_27 chrXIV:95998-96473 1.1e-10 64_[+1]_12 chrVII:779386-779931 1.1e-10 46_[-1]_30 chrXVI:860163-860692 1.7e-10 39_[-1]_37 chrXV:281971-282505 1.7e-10 13_[-1]_63 chrXV:226430-226899 1.7e-10 5_[+1]_71 chrX:531581-532214 1.7e-10 18_[-1]_58 chrVII:845326-846020 1.7e-10 63_[-1]_13 chrIV:83348-83810 1.7e-10 56_[-1]_20 chrXVI:856722-857128 2.4e-10 66_[-1]_10 chrXIII:320982-321325 2.4e-10 52_[+1]_24 chrVII:774123-774617 2.4e-10 68_[-1]_8 chrV:311724-312303 2.4e-10 68_[+1]_8 chrIV:488486-489192 2.4e-10 16_[+1]_60 chrII:326481-327200 2.4e-10 10_[+1]_66 chrXIII:290473-291198 2.7e-10 54_[-1]_22 chrV:487083-487594 2.7e-10 51_[+1]_25 chrV:354682-355342 2.7e-10 10_[-1]_66 chrV:176895-177436 2.7e-10 22_[-1]_54 chrIV:1016952-1017504 2.7e-10 37_[+1]_39 chrII:644954-645441 2.7e-10 58_[-1]_18 chrIV:1256813-1257279 3.2e-10 20_[+1]_56 chrIV:1075299-1075755 5.5e-10 3_[+1]_73 chrXIII:807988-808551 6.3e-10 35_[+1]_41 chrXV:663505-664196 8.3e-10 20_[+1]_56 chrXIII:586392-586899 8.3e-10 49_[+1]_27 chrXIII:420327-420864 8.3e-10 51_[+1]_25 chrVII:823343-823705 8.3e-10 48_[-1]_28 chrVII:412036-412588 8.3e-10 40_[+1]_36 chrXV:353787-354311 1.6e-09 50_[+1]_26 chrXIV:104601-105100 1.6e-09 44_[-1]_32 chrX:58749-59427 1.6e-09 70_[+1]_6 chrVIII:115868-116426 1.6e-09 18_[+1]_58 chrIX:174881-175226 1.6e-09 67_[-1]_9 chrII:266168-266702 1.6e-09 32_[-1]_44 chrXIII:195943-196307 2e-09 1_[+1]_75 chrXIII:480425-480826 2.3e-09 54_[+1]_22 chrX:414732-415255 2.3e-09 62_[-1]_14 chrIX:300015-300476 2.3e-09 41_[+1]_35 chrIII:151114-151514 2.3e-09 28_[+1]_48 chrIV:884253-884651 2.8e-09 58_[-1]_18 chrXIII:747662-748146 6.9e-09 46_[+1]_30 chrX:374199-374889 6.9e-09 20_[+1]_56 chrVII:828486-828979 6.9e-09 49_[+1]_27 chrIV:568589-569340 6.9e-09 6_[-1]_70 chrXI:578735-579329 1.2e-08 45_[-1]_31 chrXVI:622317-622863 2.5e-08 8_[+1]_68 chrXVI:559990-560517 2.5e-08 3_[+1]_73 chrXIII:572601-573218 2.5e-08 32_[+1]_44 chrX:422677-423236 2.5e-08 70_[-1]_6 chrIV:1095144-1095656 2.5e-08 28_[+1]_48 chrXIII:463324-463888 5.6e-08 36_[-1]_40 chrXII:426894-427514 5.6e-08 16_[-1]_60 chrX:204541-205047 5.6e-08 29_[-1]_47 chrVII:531285-532091 5.6e-08 10_[-1]_66 chrIX:336078-336628 5.6e-08 54_[+1]_22 chrII:405679-406299 5.6e-08 59_[-1]_17 chrXIV:725706-726581 8.4e-08 49_[+1]_27 chrXI:490726-491270 8.4e-08 59_[-1]_17 chrXI:83965-84578 8.4e-08 37_[-1]_39 chrVI:167252-167697 8.4e-08 68_[-1]_8 chrV:492196-492566 8.4e-08 29_[+1]_47 chrIV:946143-946606 8.4e-08 43_[-1]_33 chrIV:519651-519954 8.4e-08 41_[-1]_35 chrII:347415-347908 8.4e-08 42_[-1]_34 chrXIII:258981-259383 9.8e-08 34_[+1]_42 chrXII:167704-168237 9.8e-08 32_[+1]_44 chrII:226967-227369 9.8e-08 5_[-1]_71 chrXIII:378928-379734 1.1e-07 30_[+1]_46 chrX:415652-416245 1.1e-07 41_[+1]_35 chrXVI:689333-689843 2.1e-07 75_[-1]_1 chrV:288173-288751 2.1e-07 39_[+1]_37 chrIII:227732-228241 2.1e-07 73_[-1]_3 chrXIV:632430-632904 2.4e-07 22_[-1]_54 chrXII:975750-976191 2.4e-07 71_[+1]_5 chrVII:730953-731380 2.4e-07 61_[-1]_15 chrXVI:435620-436277 3.1e-07 3_[+1]_73 chrXVI:744064-744635 4.1e-07 23_[-1]_53 chrX:517643-518079 5.5e-07 10_[+1]_66 chrIII:149712-150167 5.5e-07 69_[-1]_7 chrXVI:829017-829342 1.2e-06 25_[-1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVKGAYCTYMN MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSGGRWTCGAACCSVKGAYCTYMN width=24 seqs=92 chrIII:123354-123798 ( 60) CGGGACTCGAACCCGGGACCTCCC 1 chrXVI:880104-880547 ( 30) GCGGGATCGAACCGCTGATCCCCG 1 chrXIV:569675-570095 ( 41) GCGGGATCGAACCGCTGATCCCCG 1 chrVIII:134082-134721 ( 9) CCGGATTCGAACCGGGGTTGTCCG 1 chrVII:738847-739512 ( 34) GCGGGATCGAACCGCTGATCCCCG 1 chrV:249769-250894 ( 44) CCGGATTCGAACCGGGGTTGTCCG 1 chrIX:183281-183714 ( 2) GCGGGATCGAACCGCTGATCCCCG 1 chrIV:802537-803013 ( 15) CCGGATTCGAACCGGGGTTGTCCG 1 chrIV:667766-668246 ( 60) GCGGGATCGAACCGCTGATCCCCG 1 chrIII:168096-168550 ( 37) CCGGATTCGAACCGGGGTTGTCCG 1 chrII:197263-197847 ( 30) GCGGGATCGAACCGCTGATCCCCG 1 chrV:130806-131377 ( 50) CCGGATTCGAACCGGGGTTGTTCG 1 chrXIV:95998-96473 ( 65) CGAGAATCGAACCCGTGTCCCCAC 1 chrVII:779386-779931 ( 47) CGAGAATCGAACCCGTGTCCCCAC 1 chrXVI:860163-860692 ( 40) CCGGAATCGAACCGGGGGCCCAAC 1 chrXV:281971-282505 ( 14) CCGGAATCGAACCGGGGGCCCAAC 1 chrXV:226430-226899 ( 6) CCGGAATCGAACCGGGGGCCCAAC 1 chrX:531581-532214 ( 19) CCGGAATCGAACCGGGGGCCCAAC 1 chrVII:845326-846020 ( 64) CCGGAATCGAACCGGGGGCCCAAC 1 chrIV:83348-83810 ( 57) CCGGAATCGAACCGGGGGCCCAAC 1 chrXVI:856722-857128 ( 67) CCGGAATCGAACCGGAGACCTCTC 1 chrXIII:320982-321325 ( 53) CCGGAATCGAACCGGAGACCTCTC 1 chrVII:774123-774617 ( 69) CCGGAATCGAACCGGAGACCTCTC 1 chrV:311724-312303 ( 69) CCGGAATCGAACCGATGACCTCTT 1 chrIV:488486-489192 ( 17) CGAGGTTCGAACTCGGGATCTTCG 1 chrII:326481-327200 ( 11) CGAGGTTCGAACTCGGGATCTTCG 1 chrXIII:290473-291198 ( 55) GGGGAGTCGAACCCCGGTCTCCAC 1 chrV:487083-487594 ( 52) GGGGAGTCGAACCCCGGTCTCCAC 1 chrV:354682-355342 ( 11) GGGGAGTCGAACCCCGGTCTCCAC 1 chrV:176895-177436 ( 23) GGGGAGTCGAACCCCGGTCTCCAC 1 chrIV:1016952-1017504 ( 38) GGGGAGTCGAACCCCGGTCTCCAC 1 chrII:644954-645441 ( 59) GGGGAGTCGAACCCCGGTCTCCAC 1 chrIV:1256813-1257279 ( 21) CGGGAATCGAACCCGGGCCCCATG 1 chrIV:1075299-1075755 ( 4) CGAGGATCGAACTCGGGACCTTTG 1 chrXIII:807988-808551 ( 36) CCGGATTCGAACTGGGGTTGTTCG 1 chrXV:663505-664196 ( 21) CCAGGATCGAACTGGGGACGTTCT 1 chrXIII:586392-586899 ( 50) CCAGGATCGAACTGGGGACGTTCT 1 chrXIII:420327-420864 ( 52) CCAGGATCGAACTGGGGACGTTCT 1 chrVII:823343-823705 ( 49) CCAGGATCGAACTGGGGACGTTCT 1 chrVII:412036-412588 ( 41) CCAGGATCGAACTGGGGACGTTCT 1 chrXV:353787-354311 ( 51) TCGGATTTGAACCGATGATCTCCA 1 chrXIV:104601-105100 ( 45) TCGGATTTGAACCGATGATCTCCA 1 chrX:58749-59427 ( 71) TCGGATTTGAACCGATGATCTCCA 1 chrVIII:115868-116426 ( 19) TCGGATTTGAACCGATGATCTCCA 1 chrIX:174881-175226 ( 68) TCGGATTTGAACCGATGATCTCCA 1 chrII:266168-266702 ( 33) TCGGATTTGAACCGATGATCTCCA 1 chrXIII:195943-196307 ( 2) TGGGAATTGAACCCAGGGCCTCTC 1 chrXIII:480425-480826 ( 55) GGGGGCTCGAACCCCTAACCTTAT 1 chrX:414732-415255 ( 63) GGGGGCTCGAACCCCTAACCTTAT 1 chrIX:300015-300476 ( 42) GGGGGCTCGAACCCCTAACCTTAT 1 chrIII:151114-151514 ( 29) GGGGGCTCGAACCCCTAACCTTAT 1 chrIV:884253-884651 ( 59) TGGGGTTTGAACCCACGACGGTCG 1 chrXIII:747662-748146 ( 47) TGGGGGTCGAACCCATAATCTTCT 1 chrX:374199-374889 ( 21) TGGGGGTCGAACCCATAATCTTCT 1 chrVII:828486-828979 ( 50) TGGGGGTCGAACCCATAATCTTCT 1 chrIV:568589-569340 ( 7) TGGGGGTCGAACCCATAATCTTCT 1 chrXI:578735-579329 ( 46) GGGGGCTCGAACCCCTGACATTTC 1 chrXVI:622317-622863 ( 9) TGTGGATCGAACACAGGACCTCCA 1 chrXVI:559990-560517 ( 4) TGTGGATCGAACACAGGACCTCCA 1 chrXIII:572601-573218 ( 33) GGAGGTTCGAACTCTCGACCTTCA 1 chrX:422677-423236 ( 71) GGAGGTTCGAACTCTCGACCTTCA 1 chrIV:1095144-1095656 ( 29) TGTGGATCGAACACAGGACCTCCA 1 chrXIII:463324-463888 ( 37) GGGGAATTGAACCCCGATCTGGCA 1 chrXII:426894-427514 ( 17) GGGGAATTGAACCCCGATCTGGCA 1 chrX:204541-205047 ( 30) GGGGAATTGAACCCCGATCTGGCA 1 chrVII:531285-532091 ( 11) GGGGAATTGAACCCCGATCTGGCA 1 chrIX:336078-336628 ( 55) GGGGAATTGAACCCCGATCTGGCA 1 chrII:405679-406299 ( 60) GGGGAATTGAACCCCGATCTGGCA 1 chrXIV:725706-726581 ( 50) CGAGGTTCGAACTCGCGCGGACAA 1 chrXI:490726-491270 ( 60) CAGGACTTGAACCTGGAATCTTCT 1 chrXI:83965-84578 ( 38) CGAGGTTCGAACTCGCGCGGACAA 1 chrVI:167252-167697 ( 69) GGCGAGTCGAACGCCCGATCTCAA 1 chrV:492196-492566 ( 30) CAGGACTTGAACCTGGAATCTTCT 1 chrIV:946143-946606 ( 44) GGCGAGTCGAACGCCCGATCTCAA 1 chrIV:519651-519954 ( 42) CGAGGTTCGAACTCGCGCGGACAA 1 chrII:347415-347908 ( 43) CGAGGTTCGAACTCGCGCGGACAA 1 chrXIII:258981-259383 ( 35) CAGGACTCGAACCTGCGCGGGCAA 1 chrXII:167704-168237 ( 33) CAGGACTCGAACCTGCGCGGGCAA 1 chrII:226967-227369 ( 6) CAGGACTCGAACCTGCGCGGGCAA 1 chrXIII:378928-379734 ( 31) CAGGAATTGAACCTGCAACCCTTC 1 chrX:415652-416245 ( 42) CAGGAATTGAACCTGCAACCCTTC 1 chrXVI:689333-689843 ( 76) CAGGATTTGAACCAGCGCGGGCAG 1 chrV:288173-288751 ( 40) CAGGATTTGAACCAGCGCGGGCAG 1 chrIII:227732-228241 ( 74) CAGGATTTGAACCAGCGCGGGCAG 1 chrXIV:632430-632904 ( 23) TGAGGGTTGAACTCACGATCTTGC 1 chrXII:975750-976191 ( 72) TGAGGGTTGAACTCACGATCTTGC 1 chrVII:730953-731380 ( 62) TGAGGGTTGAACTCACGATCTTGC 1 chrXVI:435620-436277 ( 4) TCAGGATCGAACTAAGGACCAACA 1 chrXVI:744064-744635 ( 24) TCAGAATTGAACTAACGACCTTTG 1 chrX:517643-518079 ( 11) TCGGTTTCGATCCGAGGACATCAG 1 chrIII:149712-150167 ( 70) TCGGTTTCGATCCGAGGACATCAG 1 chrXVI:829017-829342 ( 26) CGAGATTCGGACCCCTAGTGACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVKGAYCTYMN MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 45969 bayes= 10.5239 E= 7.3e-305 -1317 131 64 -38 -152 109 137 -1317 -38 -312 190 -325 -1317 -1317 240 -1317 89 -1317 109 -384 45 -66 -21 -8 -1317 -1317 -1317 168 -1317 195 -1317 -20 -1317 -1317 240 -1317 167 -1317 -412 -1317 165 -1317 -1317 -384 -1317 240 -1317 -1317 -325 195 -312 -52 -252 137 101 -203 -32 58 124 -384 -325 27 131 -20 -59 -1317 207 -1317 89 -66 -112 -52 -1317 152 -80 16 -325 164 40 -125 -225 40 -42 80 -184 147 -153 7 21 137 -253 -138 -8 52 47 -84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVKGAYCTYMN MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 92 E= 7.3e-305 0.000000 0.467391 0.293478 0.239130 0.108696 0.402174 0.489130 0.000000 0.239130 0.021739 0.706522 0.032609 0.000000 0.000000 1.000000 0.000000 0.576087 0.000000 0.402174 0.021739 0.423913 0.119565 0.163043 0.293478 0.000000 0.000000 0.000000 1.000000 0.000000 0.728261 0.000000 0.271739 0.000000 0.000000 1.000000 0.000000 0.989130 0.000000 0.010870 0.000000 0.978261 0.000000 0.000000 0.021739 0.000000 1.000000 0.000000 0.000000 0.032609 0.728261 0.021739 0.217391 0.054348 0.489130 0.380435 0.076087 0.250000 0.282609 0.445652 0.021739 0.032609 0.228261 0.467391 0.271739 0.206522 0.000000 0.793478 0.000000 0.576087 0.119565 0.086957 0.217391 0.000000 0.543478 0.108696 0.347826 0.032609 0.586957 0.250000 0.130435 0.065217 0.250000 0.141304 0.543478 0.086957 0.521739 0.065217 0.326087 0.358696 0.489130 0.032609 0.119565 0.293478 0.271739 0.260870 0.173913 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVKGAYCTYMN MEME-1 regular expression -------------------------------------------------------------------------------- [CGT][GC][GA]G[AG][AT]T[CT]GAAC[CT][CG][GCA][GTC][GA][AT][CT][CG][TC][CT][CA][ACG] -------------------------------------------------------------------------------- Time 350.07 secs. ******************************************************************************** ******************************************************************************** MOTIF CRRWKGGKTAAGGCGYMDGACTNNWAATS MEME-2 width = 29 sites = 46 llr = 910 E-value = 6.0e-155 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRRWKGGKTAAGGCGYMDGACTNNWAATS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 24441:::1a7:::2135:7::43398:: pos.-specific C 621::1:11:13:a:4611:8:22:::36 probability G 24323684::27a:811273::2211:13 matrix T ::2463258::::::4:22:2a236:271 bits 2.4 ** 2.2 ** 1.9 ** 1.7 * ** ** Relative 1.4 * * **** ** Entropy 1.2 * * **** * ** * (28.5 bits) 1.0 * ** ** **** * **** ** * 0.7 * *********** * **** **** 0.5 ** *********** * **** ***** 0.2 ********************** ***** 0.0 ----------------------------- Multilevel CAATTGGTTAAGGCGCCAGACTAATAATC consensus GGGAGTTG GC ATAG G CTA CG sequence T TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRWKGGKTAAGGCGYMDGACTNNWAATS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:689333-689843 + 38 1.31e-12 GCACTATGGC CGAGTGGTTAAGGCGACAGACTTGAAATC TGTTGGGCTC chrXIV:104601-105100 + 16 6.93e-12 CTTCTATGGC CAAGTTGGTAAGGCGCCACACTAGTAATG TGGAGATCAT chrVIII:115868-116426 - 43 6.93e-12 CTTCTATGGC CAAGTTGGTAAGGCGCCACACTAGTAATG TGGAGATCAT chrIX:174881-175226 + 39 6.93e-12 CTTCTATGGC CAAGTTGGTAAGGCGCCACACTAGTAATG TGGAGATCAT chrII:266168-266702 + 4 6.93e-12 GGC CAAGTTGGTAAGGCGCCACACTAGTAATG TGGAGATCAT chrXVI:880104-880547 - 54 3.37e-11 TCTCTTGGCC CAGTTGGTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrXIV:602095-602525 + 64 3.37e-11 TCTCTTGGCC CAGTTGGTTAAGGCACCGTGCTAATAACG CGGGGATC chrXIV:569675-570095 - 65 3.37e-11 CTTGGCC CAGTTGGTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrXII:734592-735018 + 59 3.37e-11 TCTCTTGGCC CAGTTGGTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrVII:738847-739512 + 5 3.37e-11 GGCC CAGTTGGTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrIX:183281-183714 - 26 3.37e-11 TCTCTTGGCC CAGTTGGTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrII:197263-197847 + 1 3.37e-11 . CAGTTGGTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrXIII:258981-259383 - 68 8.24e-11 TGGC CGAGTGGTTAAGGCGAAAGATTAGAAATC TTTTGGGCTT chrXII:167704-168237 - 66 8.24e-11 CTTGGC CGAGTGGTTAAGGCGAAAGATTAGAAATC TTTTGGGCTT chrX:523836-524321 - 26 8.24e-11 GCAACTTGGC CGAGTGGTTAAGGCGAAAGATTAGAAATC TTTTGGGCTT chrXI:74424-74814 + 67 1.05e-10 CTCCATGGCC AAGTTGGTTAAGGCGTGCGACTGTTAATC GCAAG chrVII:730953-731380 + 33 1.05e-10 CTCCATGGCC AAGTTGGTTAAGGCGTGCGACTGTTAATC GCAAGATCGT chrIII:127531-127896 + 65 1.05e-10 CTCCATGGCC AAGTTGGTTAAGGCGTGCGACTGTTAATC GCAAGAT chrXI:46603-47013 - 10 2.35e-10 GCCCTTTTGG CCAAGTGGTAAGGCATCGCACTCGTAATG CGGGGATCG chrXV:340133-340613 - 9 3.61e-10 TCCTCGTGGC CCAATGGTCACGGCGTCTGGCTACGAACC AGAAGATT chrXI:490726-491270 + 31 3.61e-10 TCCTCGTGGC CCAATGGTCACGGCGTCTGGCTACGAACC AGAAGATTCC chrV:492196-492566 - 54 3.61e-10 TCCTCGTGGC CCAATGGTCACGGCGTCTGGCTACGAACC AGAAGATTCC chrXII:962813-963304 - 7 4.44e-10 AGGGTTGGCC GAGTGGTCTAAGGCGGCAGACTTAAGATC TGTTGG chrX:424272-424715 - 32 4.44e-10 AGGGTTGGCC GAGTGGTCTAAGGCGGCAGACTTAAGATC TGTTGGACGG chrX:414732-415255 + 34 4.44e-10 CCTTGTTGGC GCAATCGGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrV:435615-436037 - 9 4.44e-10 CCTTGTTGGC GCAATCGGTAGCGCGTATGACTCTTAATC ATAAGGTT chrIX:300015-300476 - 66 4.44e-10 GTTGGC GCAATCGGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrIV:1201524-1201991 + 54 4.44e-10 CCTTGTTGGC GCAATCGGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrIV:519651-519954 + 3 4.44e-10 CC GAGTGGTCTAAGGCGGCAGACTTAAGATC TGTTGGACGG chrIII:151114-151514 - 53 4.44e-10 CCTTGTTGGC GCAATCGGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrII:347415-347908 + 4 4.44e-10 GCC GAGTGGTCTAAGGCGGCAGACTTAAGATC TGTTGGACGG chrXVI:338612-339230 - 10 8.06e-10 AGCGCCGTGG CGCAGTGGAAGCGCGCAGGGCTCATAACC CTGATGTCC chrX:517643-518079 - 35 8.06e-10 AGCGCCGTGG CGCAGTGGAAGCGCGCAGGGCTCATAACC CTGATGTCCT chrIII:149712-150167 + 41 8.06e-10 AGCGCCGTGG CGCAGTGGAAGCGCGCAGGGCTCATAACC CTGATGTCCT chrXIII:747662-748146 - 71 1.28e-09 G CGTAATGGCAACGCGTCTGACTTCTAATC AGAAGATTAT chrXI:162276-162851 - 7 1.28e-09 GCTCGCGTGG CGTAATGGCAACGCGTCTGACTTCTAATC AGAAGA chrX:374199-374889 - 45 1.28e-09 GCTCGCGTGG CGTAATGGCAACGCGTCTGACTTCTAATC AGAAGATTAT chrIII:227732-228241 + 17 1.41e-09 GCACTATGGC CGAGTGGTTAAGGCGAGAGACTCGAATGG AATAAAAAGT chrXVI:775645-776035 - 8 3.02e-09 GCTCGTATGG CGCAGTGGTAGCGCAGCAGATTGCAAATC TGTTGGT chrXVI:435620-436277 - 28 3.02e-09 GCTCGTATGG CGCAGTGGTAGCGCAGCAGATTGCAAATC TGTTGGTCCT chrX:354011-354474 + 65 8.01e-09 TCGGTAGCCA AGTTGGTTTAAGGCGCAAGACTGTAATTT ACCACTA chrVI:210454-210976 - 1 8.01e-09 TCGGTAGCCA AGTTGGTTTAAGGCGCAAGACTGTAATTT chrVI:167252-167697 + 26 8.01e-09 TCGGTAGCCA AGTTGGTTTAAGGCGCAAGACTGTAATTT ACCACTACGA chrIV:946143-946606 + 1 8.01e-09 . AGTTGGTTTAAGGCGCAAGACTGTAATTT ATCACTACGA chrXII:592351-592842 - 33 2.32e-08 GAGTTTGGCC GAGTGGTTTAAGGCGTCAGATTTAGGTGG ATTTAACCTC chrX:617687-618159 + 58 2.32e-08 GAGTTTGGCC GAGTGGTTTAAGGCGTCAGATTTAGGTGG ATTTAACCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRWKGGKTAAGGCGYMDGACTNNWAATS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:689333-689843 1.3e-12 37_[+2]_34 chrXIV:104601-105100 6.9e-12 15_[+2]_56 chrVIII:115868-116426 6.9e-12 42_[-2]_29 chrIX:174881-175226 6.9e-12 38_[+2]_33 chrII:266168-266702 6.9e-12 3_[+2]_68 chrXVI:880104-880547 3.4e-11 53_[-2]_18 chrXIV:602095-602525 3.4e-11 63_[+2]_8 chrXIV:569675-570095 3.4e-11 64_[-2]_7 chrXII:734592-735018 3.4e-11 58_[+2]_13 chrVII:738847-739512 3.4e-11 4_[+2]_67 chrIX:183281-183714 3.4e-11 25_[-2]_46 chrII:197263-197847 3.4e-11 [+2]_71 chrXIII:258981-259383 8.2e-11 67_[-2]_4 chrXII:167704-168237 8.2e-11 65_[-2]_6 chrX:523836-524321 8.2e-11 25_[-2]_46 chrXI:74424-74814 1e-10 66_[+2]_5 chrVII:730953-731380 1e-10 32_[+2]_39 chrIII:127531-127896 1e-10 64_[+2]_7 chrXI:46603-47013 2.3e-10 9_[-2]_62 chrXV:340133-340613 3.6e-10 8_[-2]_63 chrXI:490726-491270 3.6e-10 30_[+2]_41 chrV:492196-492566 3.6e-10 53_[-2]_18 chrXII:962813-963304 4.4e-10 6_[-2]_65 chrX:424272-424715 4.4e-10 31_[-2]_40 chrX:414732-415255 4.4e-10 33_[+2]_38 chrV:435615-436037 4.4e-10 8_[-2]_63 chrIX:300015-300476 4.4e-10 65_[-2]_6 chrIV:1201524-1201991 4.4e-10 53_[+2]_18 chrIV:519651-519954 4.4e-10 2_[+2]_69 chrIII:151114-151514 4.4e-10 52_[-2]_19 chrII:347415-347908 4.4e-10 3_[+2]_68 chrXVI:338612-339230 8.1e-10 9_[-2]_62 chrX:517643-518079 8.1e-10 34_[-2]_37 chrIII:149712-150167 8.1e-10 40_[+2]_31 chrXIII:747662-748146 1.3e-09 70_[-2]_1 chrXI:162276-162851 1.3e-09 6_[-2]_65 chrX:374199-374889 1.3e-09 44_[-2]_27 chrIII:227732-228241 1.4e-09 16_[+2]_55 chrXVI:775645-776035 3e-09 7_[-2]_64 chrXVI:435620-436277 3e-09 27_[-2]_44 chrX:354011-354474 8e-09 64_[+2]_7 chrVI:210454-210976 8e-09 [-2]_71 chrVI:167252-167697 8e-09 25_[+2]_46 chrIV:946143-946606 8e-09 [+2]_71 chrXII:592351-592842 2.3e-08 32_[-2]_39 chrX:617687-618159 2.3e-08 57_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRWKGGKTAAGGCGYMDGACTNNWAATS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRRWKGGKTAAGGCGYMDGACTNNWAATS width=29 seqs=46 chrXVI:689333-689843 ( 38) CGAGTGGTTAAGGCGACAGACTTGAAATC 1 chrXIV:104601-105100 ( 16) CAAGTTGGTAAGGCGCCACACTAGTAATG 1 chrVIII:115868-116426 ( 43) CAAGTTGGTAAGGCGCCACACTAGTAATG 1 chrIX:174881-175226 ( 39) CAAGTTGGTAAGGCGCCACACTAGTAATG 1 chrII:266168-266702 ( 4) CAAGTTGGTAAGGCGCCACACTAGTAATG 1 chrXVI:880104-880547 ( 54) CAGTTGGTTAAGGCACCGTGCTAATAACG 1 chrXIV:602095-602525 ( 64) CAGTTGGTTAAGGCACCGTGCTAATAACG 1 chrXIV:569675-570095 ( 65) CAGTTGGTTAAGGCACCGTGCTAATAACG 1 chrXII:734592-735018 ( 59) CAGTTGGTTAAGGCACCGTGCTAATAACG 1 chrVII:738847-739512 ( 5) CAGTTGGTTAAGGCACCGTGCTAATAACG 1 chrIX:183281-183714 ( 26) CAGTTGGTTAAGGCACCGTGCTAATAACG 1 chrII:197263-197847 ( 1) CAGTTGGTTAAGGCACCGTGCTAATAACG 1 chrXIII:258981-259383 ( 68) CGAGTGGTTAAGGCGAAAGATTAGAAATC 1 chrXII:167704-168237 ( 66) CGAGTGGTTAAGGCGAAAGATTAGAAATC 1 chrX:523836-524321 ( 26) CGAGTGGTTAAGGCGAAAGATTAGAAATC 1 chrXI:74424-74814 ( 67) AAGTTGGTTAAGGCGTGCGACTGTTAATC 1 chrVII:730953-731380 ( 33) AAGTTGGTTAAGGCGTGCGACTGTTAATC 1 chrIII:127531-127896 ( 65) AAGTTGGTTAAGGCGTGCGACTGTTAATC 1 chrXI:46603-47013 ( 10) CCAAGTGGTAAGGCATCGCACTCGTAATG 1 chrXV:340133-340613 ( 9) CCAATGGTCACGGCGTCTGGCTACGAACC 1 chrXI:490726-491270 ( 31) CCAATGGTCACGGCGTCTGGCTACGAACC 1 chrV:492196-492566 ( 54) CCAATGGTCACGGCGTCTGGCTACGAACC 1 chrXII:962813-963304 ( 7) GAGTGGTCTAAGGCGGCAGACTTAAGATC 1 chrX:424272-424715 ( 32) GAGTGGTCTAAGGCGGCAGACTTAAGATC 1 chrX:414732-415255 ( 34) GCAATCGGTAGCGCGTATGACTCTTAATC 1 chrV:435615-436037 ( 9) GCAATCGGTAGCGCGTATGACTCTTAATC 1 chrIX:300015-300476 ( 66) GCAATCGGTAGCGCGTATGACTCTTAATC 1 chrIV:1201524-1201991 ( 54) GCAATCGGTAGCGCGTATGACTCTTAATC 1 chrIV:519651-519954 ( 3) GAGTGGTCTAAGGCGGCAGACTTAAGATC 1 chrIII:151114-151514 ( 53) GCAATCGGTAGCGCGTATGACTCTTAATC 1 chrII:347415-347908 ( 4) GAGTGGTCTAAGGCGGCAGACTTAAGATC 1 chrXVI:338612-339230 ( 10) CGCAGTGGAAGCGCGCAGGGCTCATAACC 1 chrX:517643-518079 ( 35) CGCAGTGGAAGCGCGCAGGGCTCATAACC 1 chrIII:149712-150167 ( 41) CGCAGTGGAAGCGCGCAGGGCTCATAACC 1 chrXIII:747662-748146 ( 71) CGTAATGGCAACGCGTCTGACTTCTAATC 1 chrXI:162276-162851 ( 7) CGTAATGGCAACGCGTCTGACTTCTAATC 1 chrX:374199-374889 ( 45) CGTAATGGCAACGCGTCTGACTTCTAATC 1 chrIII:227732-228241 ( 17) CGAGTGGTTAAGGCGAGAGACTCGAATGG 1 chrXVI:775645-776035 ( 8) CGCAGTGGTAGCGCAGCAGATTGCAAATC 1 chrXVI:435620-436277 ( 28) CGCAGTGGTAGCGCAGCAGATTGCAAATC 1 chrX:354011-354474 ( 65) AGTTGGTTTAAGGCGCAAGACTGTAATTT 1 chrVI:210454-210976 ( 1) AGTTGGTTTAAGGCGCAAGACTGTAATTT 1 chrVI:167252-167697 ( 26) AGTTGGTTTAAGGCGCAAGACTGTAATTT 1 chrIV:946143-946606 ( 1) AGTTGGTTTAAGGCGCAAGACTGTAATTT 1 chrXII:592351-592842 ( 33) GAGTGGTTTAAGGCGTCAGATTTAGGTGG 1 chrX:617687-618159 ( 58) GAGTGGTTTAAGGCGTCAGATTTAGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRWKGGKTAAGGCGYMDGACTNNWAATS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 42984 bayes= 11.4275 E= 6.0e-155 -103 169 34 -1217 48 5 97 -1217 33 -80 88 -103 25 -1217 5 48 -225 -1217 88 92 -1217 -80 169 -14 -1217 -1217 205 -52 -1217 -112 105 75 -225 -53 -1217 137 168 -1217 -1217 -1217 121 -153 20 -1217 -1217 58 192 -1217 -1217 -1217 240 -1217 -1217 240 -1217 -1217 -52 -1217 205 -1217 -152 105 -53 25 7 164 -112 -1217 55 -153 34 -38 -1217 -80 197 -103 121 -1217 58 -1217 -1217 217 -1217 -103 -1217 -1217 -1217 168 25 20 5 -52 16 -12 20 -25 7 -1217 -80 86 148 -1217 -53 -1217 145 -1217 -1217 -103 -1217 58 -153 107 -1217 164 79 -184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRWKGGKTAAGGCGYMDGACTNNWAATS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 46 E= 6.0e-155 0.152174 0.608696 0.239130 0.000000 0.434783 0.195652 0.369565 0.000000 0.391304 0.108696 0.347826 0.152174 0.369565 0.000000 0.195652 0.434783 0.065217 0.000000 0.347826 0.586957 0.000000 0.108696 0.608696 0.282609 0.000000 0.000000 0.782609 0.217391 0.000000 0.086957 0.391304 0.521739 0.065217 0.130435 0.000000 0.804348 1.000000 0.000000 0.000000 0.000000 0.717391 0.065217 0.217391 0.000000 0.000000 0.282609 0.717391 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.217391 0.000000 0.782609 0.000000 0.108696 0.391304 0.130435 0.369565 0.326087 0.586957 0.086957 0.000000 0.456522 0.065217 0.239130 0.239130 0.000000 0.108696 0.739130 0.152174 0.717391 0.000000 0.282609 0.000000 0.000000 0.847826 0.000000 0.152174 0.000000 0.000000 0.000000 1.000000 0.369565 0.217391 0.195652 0.217391 0.347826 0.173913 0.217391 0.260870 0.326087 0.000000 0.108696 0.565217 0.869565 0.000000 0.130435 0.000000 0.847826 0.000000 0.000000 0.152174 0.000000 0.282609 0.065217 0.652174 0.000000 0.586957 0.326087 0.086957 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRWKGGKTAAGGCGYMDGACTNNWAATS MEME-2 regular expression -------------------------------------------------------------------------------- [CG][AG][AG][TA][TG][GT][GT][TG]TA[AG][GC]GC[GA][CT][CA][AGT]G[AG]CT[ACT][ATG][TA]AA[TC][CG] -------------------------------------------------------------------------------- Time 669.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGYBTAGTGGKKARVGCSHHC MEME-3 width = 23 sites = 48 llr = 669 E-value = 1.3e-057 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGYBTAGTGGKKARVGCSHHC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:3::::9:::::26442::332 pos.-specific C ::::433:::2:::1:3:63235 probability G 5:7a:411916a53:52725112 matrix T 2a::636:182:55321222442 bits 2.4 * 2.2 * * 1.9 * * 1.7 * * * * Relative 1.4 * * * * Entropy 1.2 *** ** * (20.1 bits) 1.0 **** ** ** * 0.7 ***** ******* *** 0.5 ************* ** *** 0.2 ******************** * 0.0 ----------------------- Multilevel GTGGTGTAGTGGTTAGAGCGTTC consensus A A CTC T GGTAC TCAA sequence T C A G CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYBTAGTGGKKARVGCSHHC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------- chrXVI:856722-857128 + 33 4.35e-12 ATTCGGGCGT GTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXII:656840-657215 - 1 4.35e-12 AATTGGGCGT GTGGCGTAGTCGGTAGCGCGCTC chrVII:774123-774617 + 35 4.35e-12 AATTGGGCGT GTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXV:274467-274978 + 7 1.68e-09 GTCCCA GTGGCCGAGTGGTTAAGGCGATG CCCTGCTATT chrIV:1150700-1151165 - 31 1.68e-09 TTCAGTCCCA GTGGCCGAGTGGTTAAGGCGATG CCTGCTATTT chrVII:794238-794572 + 68 4.32e-09 TTGCGGGCAC ATGGCGCAGTTGGTAGCGCGCTT CCCTTGCAAG chrVII:115323-115725 + 20 7.77e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrXVI:860163-860692 + 8 1.55e-08 AGCGCAA GTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXV:226430-226899 - 39 1.55e-08 TTCAGCGCAA GTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVII:845326-846020 + 32 1.55e-08 ACAAGCGCAA GTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVI:162023-162389 + 78 1.55e-08 ACAAGCGCAA GTGGTTTAGTGGTAAAATCCAAC chrIV:83348-83810 + 25 1.55e-08 CTTAGCGCAA GTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXV:663505-664196 - 57 2.96e-08 TAGTGGTTTC GTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:307985-308455 - 19 2.96e-08 AAGTGGTTTC GTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVII:823343-823705 + 14 2.96e-08 GAGTGGTTTC GTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:469234-469656 + 68 2.96e-08 AATTGGTTTC GTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrIV:1305407-1305829 + 68 3.79e-08 TTAAGGCAAC TTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXVI:622317-622863 - 63 5.42e-08 ATATGCGGAT TTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXVI:559990-560517 - 58 5.42e-08 TTGAGCGGAT TTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXIV:374642-375117 + 46 5.42e-08 ATAAGCGGAC TTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVIII:358304-358780 - 49 5.42e-08 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVIII:237750-238136 - 18 5.42e-08 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXIII:195943-196307 - 67 6.83e-08 ACAAGGGCGT GTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrI:138952-139369 + 48 6.83e-08 GTACGGGCGT GTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXIII:572601-573218 - 68 1.47e-07 GATAGCTTCA GTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrX:422677-423236 + 37 1.47e-07 GTATGCTTCA GTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrXIII:807988-808551 - 70 2.00e-07 AAGGTCCT ATAGTGTAGTGGTTATCACTTTC GGTTCTGATC chrV:249769-250894 + 11 2.00e-07 TACTGGTCCT ATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrIV:802537-803013 - 49 2.00e-07 TGTCGGTCCT ATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrIII:168096-168550 - 71 2.00e-07 TGGTCCT ATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrII:350572-351056 + 69 2.00e-07 AAAGGGTTTT ATAGTGTAGTGGTTATCACTTTC GGTTTTGAT chrIV:1256813-1257279 - 55 2.69e-07 CTTAGCGAAA GTGGTTCAGTGGTTAGAATTCAT GCTTCCCAAG chrXI:666617-666799 + 15 3.92e-07 TGGTGTGGGT GTGGTGTGGGTGTGTGGGTGTGG TGTGTGGGTG chrIV:488486-489192 - 53 5.15e-07 TTCCGGTCCA ATGGTCCAGTGGTTCAAGACGTC GCCTTTACAC chrII:326481-327200 - 47 5.15e-07 TCCGGGTCCA ATGGTCCAGTGGTTCAAGACGTC GCCTTTACAC chrXIV:6616-7004 - 12 6.14e-07 TGGGAGTGGT ATGGTTGAGTGGGGCAGGGTAAC GAGTGGGGAG chrIII:316215-316595 + 65 6.14e-07 TGGGAGTGGT ATGGTTGAGTGGGGCAGGGTAAC GAGTGGGGAG chrXVI:581699-582390 + 74 7.29e-07 AAGAGCCTTG TTGGCGCAATCGGTAGCGCGTAT GACT chrIV:13-226 - 41 7.93e-07 GGGTGTGGGT GTGGTGTGTGGGTGTGGGTGTGG TGTGGGTGTG chrVII:779386-779931 + 14 8.62e-07 CCCCGGGCGG TTAGTGTAGTGGTTATCATCCCA CCCTTCCAAG chrXIII:5456-5661 - 27 9.36e-07 GGGTGTGGGT GTGGTGTGTGGGTGTGGGTGTAT ATATATGTCA chrVIII:562334-562593 + 51 1.19e-06 AAGTGTGGGT GTGGTGTGTGGGTGTGGGTGTGT GTGTGGGTGT chrXIV:631703-632129 - 23 1.88e-06 TACCGGGCGT GTGGTCTAGAGGTATGATTCTCG CTTAGGGTGC chrIII:73-594 - 23 5.17e-06 TGGTGTGGGT GTGGTGTGTGTGGGTGTGGGTGT GTGGGTGTGG chrXII:628093-628629 + 78 6.58e-06 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGCGCC chrIV:1075299-1075755 - 39 6.98e-06 TATTGTTCCA ATAGTGTAGCGGCTATCACGTTG CCTTCACACG chrXIV:783750-784325 + 61 9.77e-06 GTGTGTGGGT GTGGTGTGTGTGGGTGTGTGGGT GTGGGTGTGT chrXIII:145904-146251 - 63 1.71e-05 TACTGGTGCT ATGGTGTATGGTGTATGGTGTAT GGATGTACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYBTAGTGGKKARVGCSHHC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:856722-857128 4.3e-12 32_[+3]_45 chrXII:656840-657215 4.3e-12 [-3]_77 chrVII:774123-774617 4.3e-12 34_[+3]_43 chrXV:274467-274978 1.7e-09 6_[+3]_71 chrIV:1150700-1151165 1.7e-09 30_[-3]_47 chrVII:794238-794572 4.3e-09 67_[+3]_10 chrVII:115323-115725 7.8e-09 19_[+3]_58 chrXVI:860163-860692 1.6e-08 7_[+3]_70 chrXV:226430-226899 1.6e-08 38_[-3]_39 chrVII:845326-846020 1.6e-08 31_[+3]_46 chrVI:162023-162389 1.6e-08 77_[+3] chrIV:83348-83810 1.6e-08 24_[+3]_53 chrXV:663505-664196 3e-08 56_[-3]_21 chrXI:307985-308455 3e-08 18_[-3]_59 chrVII:823343-823705 3e-08 13_[+3]_64 chrV:469234-469656 3e-08 67_[+3]_10 chrIV:1305407-1305829 3.8e-08 67_[+3]_10 chrXVI:622317-622863 5.4e-08 62_[-3]_15 chrXVI:559990-560517 5.4e-08 57_[-3]_20 chrXIV:374642-375117 5.4e-08 45_[+3]_32 chrVIII:358304-358780 5.4e-08 48_[-3]_29 chrVIII:237750-238136 5.4e-08 17_[-3]_60 chrXIII:195943-196307 6.8e-08 66_[-3]_11 chrI:138952-139369 6.8e-08 47_[+3]_30 chrXIII:572601-573218 1.5e-07 67_[-3]_10 chrX:422677-423236 1.5e-07 36_[+3]_41 chrXIII:807988-808551 2e-07 69_[-3]_8 chrV:249769-250894 2e-07 10_[+3]_67 chrIV:802537-803013 2e-07 48_[-3]_29 chrIII:168096-168550 2e-07 70_[-3]_7 chrII:350572-351056 2e-07 68_[+3]_9 chrIV:1256813-1257279 2.7e-07 54_[-3]_23 chrXI:666617-666799 3.9e-07 14_[+3]_63 chrIV:488486-489192 5.1e-07 52_[-3]_25 chrII:326481-327200 5.1e-07 46_[-3]_31 chrXIV:6616-7004 6.1e-07 11_[-3]_66 chrIII:316215-316595 6.1e-07 64_[+3]_13 chrXVI:581699-582390 7.3e-07 73_[+3]_4 chrIV:13-226 7.9e-07 40_[-3]_37 chrVII:779386-779931 8.6e-07 13_[+3]_64 chrXIII:5456-5661 9.4e-07 26_[-3]_51 chrVIII:562334-562593 1.2e-06 50_[+3]_27 chrXIV:631703-632129 1.9e-06 22_[-3]_55 chrIII:73-594 5.2e-06 22_[-3]_55 chrXII:628093-628629 6.6e-06 77_[+3] chrIV:1075299-1075755 7e-06 38_[-3]_39 chrXIV:783750-784325 9.8e-06 60_[+3]_17 chrXIII:145904-146251 1.7e-05 62_[-3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYBTAGTGGKKARVGCSHHC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGYBTAGTGGKKARVGCSHHC width=23 seqs=48 chrXVI:856722-857128 ( 33) GTGGCGTAGTCGGTAGCGCGCTC 1 chrXII:656840-657215 ( 1) GTGGCGTAGTCGGTAGCGCGCTC 1 chrVII:774123-774617 ( 35) GTGGCGTAGTCGGTAGCGCGCTC 1 chrXV:274467-274978 ( 7) GTGGCCGAGTGGTTAAGGCGATG 1 chrIV:1150700-1151165 ( 31) GTGGCCGAGTGGTTAAGGCGATG 1 chrVII:794238-794572 ( 68) ATGGCGCAGTTGGTAGCGCGCTT 1 chrVII:115323-115725 ( 20) TTAGCTCAGTTGGTAGAGCGTTC 1 chrXVI:860163-860692 ( 8) GTGGTTTAGTGGTAAAATCCAAC 1 chrXV:226430-226899 ( 39) GTGGTTTAGTGGTAAAATCCAAC 1 chrVII:845326-846020 ( 32) GTGGTTTAGTGGTAAAATCCAAC 1 chrVI:162023-162389 ( 78) GTGGTTTAGTGGTAAAATCCAAC 1 chrIV:83348-83810 ( 25) GTGGTTTAGTGGTAAAATCCAAC 1 chrXV:663505-664196 ( 57) GTGGTCTAGTCGGTTATGGCATC 1 chrXI:307985-308455 ( 19) GTGGTCTAGTCGGTTATGGCATC 1 chrVII:823343-823705 ( 14) GTGGTCTAGTCGGTTATGGCATC 1 chrV:469234-469656 ( 68) GTGGTCTAGTCGGTTATGGCATC 1 chrIV:1305407-1305829 ( 68) TTGGCCGAGTGGTTAAGGCGAAA 1 chrXVI:622317-622863 ( 63) TTAGCTCAGTTGGGAGAGCGCCA 1 chrXVI:559990-560517 ( 58) TTAGCTCAGTTGGGAGAGCGCCA 1 chrXIV:374642-375117 ( 46) TTAGCTCAGTTGGGAGAGCGCCA 1 chrVIII:358304-358780 ( 49) TTAGCTCAGTTGGGAGAGCGCCA 1 chrVIII:237750-238136 ( 18) TTAGCTCAGTTGGGAGAGCGCCA 1 chrXIII:195943-196307 ( 67) GTGGTCTAGTGGTATGATTCTCG 1 chrI:138952-139369 ( 48) GTGGTCTAGTGGTATGATTCTCG 1 chrXIII:572601-573218 ( 68) GTAGCTCAGTAGGAAGAGCGTCA 1 chrX:422677-423236 ( 37) GTAGCTCAGTAGGAAGAGCGTCA 1 chrXIII:807988-808551 ( 70) ATAGTGTAGTGGTTATCACTTTC 1 chrV:249769-250894 ( 11) ATAGTGTAGTGGTTATCACTTTC 1 chrIV:802537-803013 ( 49) ATAGTGTAGTGGTTATCACTTTC 1 chrIII:168096-168550 ( 71) ATAGTGTAGTGGTTATCACTTTC 1 chrII:350572-351056 ( 69) ATAGTGTAGTGGTTATCACTTTC 1 chrIV:1256813-1257279 ( 55) GTGGTTCAGTGGTTAGAATTCAT 1 chrXI:666617-666799 ( 15) GTGGTGTGGGTGTGTGGGTGTGG 1 chrIV:488486-489192 ( 53) ATGGTCCAGTGGTTCAAGACGTC 1 chrII:326481-327200 ( 47) ATGGTCCAGTGGTTCAAGACGTC 1 chrXIV:6616-7004 ( 12) ATGGTTGAGTGGGGCAGGGTAAC 1 chrIII:316215-316595 ( 65) ATGGTTGAGTGGGGCAGGGTAAC 1 chrXVI:581699-582390 ( 74) TTGGCGCAATCGGTAGCGCGTAT 1 chrIV:13-226 ( 41) GTGGTGTGTGGGTGTGGGTGTGG 1 chrVII:779386-779931 ( 14) TTAGTGTAGTGGTTATCATCCCA 1 chrXIII:5456-5661 ( 27) GTGGTGTGTGGGTGTGGGTGTAT 1 chrVIII:562334-562593 ( 51) GTGGTGTGTGGGTGTGGGTGTGT 1 chrXIV:631703-632129 ( 23) GTGGTCTAGAGGTATGATTCTCG 1 chrIII:73-594 ( 23) GTGGTGTGTGTGGGTGTGGGTGT 1 chrXII:628093-628629 ( 78) TTGGCCGAGCGGTCTAAGGCGCC 1 chrIV:1075299-1075755 ( 39) ATAGTGTAGCGGCTATCACGTTG 1 chrXIV:783750-784325 ( 61) GTGGTGTGTGTGGGTGTGTGGGT 1 chrXIII:145904-146251 ( 63) ATGGTGTATGGTGTATGGTGTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYBTAGTGGKKARVGCSHHC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 23 n= 46566 bayes= 12.0212 E= 1.3e-057 -32 -1223 152 -58 -1223 -1223 -1223 168 1 -1223 186 -1223 -1223 -1223 240 -1223 -1223 91 -1223 105 -1223 52 107 10 -1223 52 -60 96 149 -1223 -60 -1223 -390 -1223 218 -132 -390 -218 -37 135 -290 -18 163 -58 -1223 -1223 237 -390 -1223 -318 128 74 -58 -318 52 68 101 -118 -1223 -9 19 -1223 134 -90 42 40 14 -132 -90 -1223 182 -90 -290 157 -18 -44 -1223 82 140 -90 -9 28 -118 35 -32 40 -86 35 -73 134 -18 -90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYBTAGTGGKKARVGCSHHC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 23 nsites= 48 E= 1.3e-057 0.250000 0.000000 0.541667 0.208333 0.000000 0.000000 0.000000 1.000000 0.312500 0.000000 0.687500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.354167 0.000000 0.645833 0.000000 0.270833 0.395833 0.333333 0.000000 0.270833 0.125000 0.604167 0.875000 0.000000 0.125000 0.000000 0.020833 0.000000 0.854167 0.125000 0.020833 0.041667 0.145833 0.791667 0.041667 0.166667 0.583333 0.208333 0.000000 0.000000 0.979167 0.020833 0.000000 0.020833 0.458333 0.520833 0.208333 0.020833 0.270833 0.500000 0.625000 0.083333 0.000000 0.291667 0.354167 0.000000 0.479167 0.166667 0.416667 0.250000 0.208333 0.125000 0.166667 0.000000 0.666667 0.166667 0.041667 0.562500 0.166667 0.229167 0.000000 0.333333 0.500000 0.166667 0.291667 0.229167 0.083333 0.395833 0.250000 0.250000 0.104167 0.395833 0.187500 0.479167 0.166667 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYBTAGTGGKKARVGCSHHC MEME-3 regular expression -------------------------------------------------------------------------------- [GAT]T[GA]G[TC][GTC][TC]AGT[GT]G[TG][TGA][AT][GA][ACG]G[CT][GC][TAC][TAC]C -------------------------------------------------------------------------------- Time 978.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:28566-28928 9.33e-01 100 chrI:71770-74180 4.70e-01 100 chrI:81942-82313 2.93e-01 100 chrI:138952-139369 2.39e-04 47_[+3(6.83e-08)]_30 chrI:142131-143573 1.88e-01 100 chrI:166170-167048 9.94e-01 100 chrI:181124-181473 9.96e-01 100 chrI:182193-183240 6.15e-02 100 chrII:9457-10042 5.78e-01 100 chrII:36244-36888 7.06e-02 100 chrII:44797-45356 9.13e-01 100 chrII:59824-61446 6.66e-01 100 chrII:87946-88572 7.39e-01 100 chrII:88937-89522 9.85e-01 100 chrII:89684-89983 8.06e-01 100 chrII:136041-136271 7.24e-02 100 chrII:165060-165634 8.95e-01 100 chrII:167504-168209 9.58e-01 100 chrII:181311-181632 5.42e-01 100 chrII:197263-197847 1.24e-15 [+2(3.37e-11)]_[-1(1.11e-11)]_47 chrII:226967-227369 2.19e-04 5_[-1(9.83e-08)]_71 chrII:266168-266702 1.42e-14 3_[+2(6.93e-12)]_[-1(1.56e-09)]_44 chrII:326481-327200 1.45e-10 10_[+1(2.36e-10)]_12_[-3(5.15e-07)]_\ 31 chrII:331799-331978 9.88e-02 100 chrII:332271-334117 7.50e-02 100 chrII:342485-342922 4.03e-01 100 chrII:347415-347908 2.84e-11 3_[+2(4.44e-10)]_10_[-1(8.39e-08)]_\ 34 chrII:350572-351056 8.58e-04 68_[+3(2.00e-07)]_9 chrII:391512-391901 4.06e-02 20_[+3(8.66e-05)]_57 chrII:405679-406299 1.29e-06 26_[+3(2.70e-05)]_10_[-1(5.57e-08)]_\ 17 chrII:415525-416066 9.99e-01 100 chrII:476278-476637 9.50e-01 100 chrII:476808-477764 1.94e-01 100 chrII:592347-593443 1.55e-01 100 chrII:604059-607104 5.50e-01 100 chrII:642836-643438 8.94e-01 100 chrII:644954-645441 4.66e-07 58_[-1(2.73e-10)]_18 chrII:680383-682321 4.20e-01 100 chrIII:73-594 3.28e-03 22_[-3(5.17e-06)]_55 chrIII:839-1063 7.60e-01 100 chrIII:30558-31186 9.28e-01 100 chrIII:82194-82670 5.59e-01 100 chrIII:90852-91144 4.39e-01 100 chrIII:107178-107837 8.33e-01 100 chrIII:123354-123798 1.50e-10 59_[+1(2.00e-14)]_17 chrIII:127531-127896 4.20e-08 64_[+2(1.05e-10)]_7 chrIII:142100-142998 4.99e-01 100 chrIII:149712-150167 6.59e-10 40_[+2(8.06e-10)]_[-1(5.54e-07)]_7 chrIII:151114-151514 2.18e-15 28_[+1(2.25e-09)]_[-2(4.44e-10)]_19 chrIII:163469-163896 2.08e-01 100 chrIII:168096-168550 1.38e-11 36_[+1(1.11e-11)]_10_[-3(2.00e-07)]_\ 7 chrIII:177053-178783 7.24e-01 100 chrIII:227732-228241 3.61e-14 16_[+2(1.41e-09)]_28_[-1(2.07e-07)]_\ 3 chrIII:262717-263070 7.50e-01 100 chrIII:294939-295958 7.28e-01 100 chrIII:315599-316030 3.13e-01 100 chrIII:316215-316595 2.47e-04 64_[+3(6.14e-07)]_13 chrIV:13-226 1.74e-03 4_[-3(2.88e-06)]_13_[-3(7.93e-07)]_\ 37 chrIV:83348-83810 2.41e-11 24_[+3(1.55e-08)]_9_[-1(1.75e-10)]_\ 20 chrIV:116227-118218 4.46e-01 100 chrIV:125317-125738 5.84e-01 100 chrIV:126012-126305 1.64e-01 100 chrIV:129940-131079 7.25e-01 100 chrIV:158933-159985 8.76e-01 100 chrIV:216574-218061 2.09e-02 100 chrIV:221408-222373 9.74e-01 100 chrIV:229336-231833 8.94e-01 100 chrIV:306657-309556 6.60e-01 100 chrIV:321625-321948 4.89e-01 100 chrIV:322160-323629 3.89e-01 100 chrIV:340372-342321 4.51e-01 100 chrIV:355020-356974 1.84e-01 100 chrIV:358054-358477 7.20e-01 100 chrIV:359242-359797 1.28e-01 100 chrIV:386167-386882 2.29e-01 100 chrIV:410124-410815 2.03e-02 7_[+1(3.81e-05)]_69 chrIV:410969-411671 7.42e-02 100 chrIV:433916-435115 9.94e-01 100 chrIV:437538-438417 8.78e-01 100 chrIV:446630-446915 2.97e-01 100 chrIV:488486-489192 2.33e-11 16_[+1(2.36e-10)]_12_[-3(5.15e-07)]_\ 25 chrIV:490539-491245 9.93e-01 100 chrIV:491415-492675 5.78e-01 100 chrIV:509628-510659 9.82e-01 100 chrIV:519651-519954 2.84e-11 2_[+2(4.44e-10)]_10_[-1(8.39e-08)]_\ 35 chrIV:520111-520438 9.63e-01 100 chrIV:520653-521162 9.97e-01 100 chrIV:540644-541888 8.55e-01 100 chrIV:568589-569340 3.81e-07 6_[-1(6.94e-09)]_25_[+3(2.70e-05)]_\ 22 chrIV:578851-580758 1.01e-01 100 chrIV:599829-600115 8.11e-02 44_[+1(8.24e-05)]_32 chrIV:619608-620182 9.63e-01 100 chrIV:644889-645365 2.13e-01 100 chrIV:667766-668246 6.95e-08 59_[+1(1.11e-11)]_17 chrIV:720588-720847 4.46e-01 100 chrIV:721020-721593 6.73e-01 100 chrIV:795244-796255 8.72e-01 100 chrIV:802537-803013 1.38e-11 14_[+1(1.11e-11)]_10_[-3(2.00e-07)]_\ 29 chrIV:835752-836250 2.17e-01 100 chrIV:884253-884651 8.93e-06 58_[-1(2.85e-09)]_18 chrIV:946143-946606 9.65e-10 [+2(8.01e-09)]_14_[-1(8.39e-08)]_33 chrIV:980756-981161 9.36e-04 74_[+1(9.83e-08)]_2 chrIV:992724-993218 8.16e-01 100 chrIV:1013404-1013936 3.28e-01 100 chrIV:1016952-1017504 2.58e-07 37_[+1(2.73e-10)]_39 chrIV:1062650-1063113 9.19e-01 100 chrIV:1075299-1075755 1.30e-08 3_[+1(5.54e-10)]_11_[-3(6.98e-06)]_\ 39 chrIV:1095144-1095656 5.15e-05 28_[+1(2.52e-08)]_48 chrIV:1150700-1151165 2.48e-06 30_[-3(1.68e-09)]_47 chrIV:1166189-1166939 8.15e-01 100 chrIV:1175742-1176124 3.81e-01 100 chrIV:1201524-1201991 1.76e-09 53_[+2(4.44e-10)]_18 chrIV:1212972-1214337 6.85e-01 100 chrIV:1236411-1238635 8.92e-01 100 chrIV:1256813-1257279 2.60e-10 20_[+1(3.16e-10)]_10_[-3(2.69e-07)]_\ 23 chrIV:1300443-1301325 9.63e-01 100 chrIV:1305407-1305829 2.51e-04 67_[+3(3.79e-08)]_10 chrIV:1344990-1346147 2.19e-01 100 chrIV:1352181-1353502 8.51e-01 100 chrIV:1355745-1356254 5.98e-01 100 chrIV:1359360-1361201 4.24e-01 100 chrIV:1401062-1403400 5.70e-02 100 chrIV:1449840-1451223 5.39e-02 100 chrIV:1461471-1461849 3.79e-01 100 chrIV:1468940-1469152 2.52e-01 100 chrIV:1502304-1502700 7.55e-01 100 chrIX:68258-68495 2.54e-01 100 chrIX:99635-100081 6.71e-01 100 chrIX:138449-139141 6.65e-01 100 chrIX:174881-175226 7.06e-16 38_[+2(6.93e-12)]_[-1(1.56e-09)]_9 chrIX:183281-183714 1.47e-19 1_[+1(1.11e-11)]_[-2(3.37e-11)]_46 chrIX:197351-198059 9.52e-01 100 chrIX:210657-210990 4.41e-01 100 chrIX:240312-240674 2.76e-01 100 chrIX:248578-249016 7.98e-01 100 chrIX:254231-254561 9.27e-03 61_[+3(3.33e-05)]_16 chrIX:257387-258262 1.79e-01 100 chrIX:300015-300476 2.18e-15 41_[+1(2.25e-09)]_[-2(4.44e-10)]_6 chrIX:316119-318329 8.81e-02 100 chrIX:322236-324384 8.87e-01 100 chrIX:325736-326124 5.43e-01 100 chrIX:336078-336628 4.29e-05 54_[+1(5.57e-08)]_22 chrIX:370222-370854 6.94e-01 100 chrIX:388141-388542 9.12e-01 100 chrIX:394816-395206 8.32e-01 100 chrIX:427285-427995 4.78e-01 100 chrV:53526-53976 5.10e-01 100 chrV:61055-62183 2.59e-01 100 chrV:67174-70252 2.36e-01 100 chrV:77952-79470 6.18e-02 58_[+3(2.94e-05)]_19 chrV:85110-86917 9.73e-02 100 chrV:99773-100329 9.27e-01 100 chrV:117453-118301 5.49e-01 100 chrV:130806-131377 4.84e-07 49_[+1(5.71e-11)]_27 chrV:135167-136056 3.93e-01 100 chrV:138213-139970 3.94e-01 100 chrV:140136-141324 2.09e-02 100 chrV:176895-177436 2.59e-06 22_[-1(2.73e-10)]_54 chrV:207350-207919 3.65e-01 100 chrV:228060-228589 1.00e+00 100 chrV:241988-242287 5.05e-01 100 chrV:249769-250894 1.38e-11 10_[+3(2.00e-07)]_10_[-1(1.11e-11)]_\ 33 chrV:269082-270691 8.54e-01 100 chrV:288173-288751 6.72e-04 39_[+1(2.07e-07)]_37 chrV:303759-304599 5.16e-01 100 chrV:305816-306925 6.55e-01 100 chrV:311724-312303 3.49e-06 68_[+1(2.36e-10)]_8 chrV:322003-322990 9.20e-01 100 chrV:354682-355342 3.81e-06 10_[-1(2.73e-10)]_66 chrV:362118-362471 6.05e-01 100 chrV:396168-398390 9.75e-01 100 chrV:422820-424355 9.35e-01 100 chrV:431018-432209 8.02e-01 100 chrV:434396-435154 2.21e-01 100 chrV:435615-436037 1.76e-09 8_[-2(4.44e-10)]_63 chrV:436238-436408 5.28e-01 100 chrV:438250-438995 8.84e-01 100 chrV:441768-442665 1.97e-01 100 chrV:442960-443364 6.20e-01 100 chrV:469234-469656 2.44e-04 67_[+3(2.96e-08)]_10 chrV:487083-487594 1.32e-06 51_[+1(2.73e-10)]_25 chrV:491145-491975 5.91e-01 100 chrV:492196-492566 5.86e-12 29_[+1(8.39e-08)]_[-2(3.61e-10)]_18 chrV:551025-551803 8.52e-01 100 chrVI:63992-65421 8.77e-01 100 chrVI:95484-95900 1.45e-01 100 chrVI:101136-102879 7.12e-01 100 chrVI:130280-131874 9.97e-01 100 chrVI:136828-137707 8.51e-02 100 chrVI:157845-158445 7.11e-01 100 chrVI:162023-162389 9.20e-05 77_[+3(1.55e-08)] chrVI:167252-167697 9.45e-11 25_[+2(8.01e-09)]_14_[-1(8.39e-08)]_\ 8 chrVI:180586-181271 7.05e-01 100 chrVI:181634-182397 8.51e-01 100 chrVI:190724-191776 2.45e-01 100 chrVI:210454-210976 2.17e-06 [-2(8.01e-09)]_71 chrVI:220086-222249 5.83e-01 100 chrVI:223234-224162 7.08e-01 100 chrVI:224353-225953 1.38e-01 100 chrVI:226383-226923 8.70e-01 100 chrVII:110281-110789 6.77e-01 100 chrVII:115323-115725 1.09e-11 19_[+3(7.77e-09)]_34_[-1(1.16e-08)] chrVII:115882-116070 3.97e-01 100 chrVII:121970-122476 1.16e-01 100 chrVII:148136-149559 9.22e-01 100 chrVII:185355-185918 5.67e-01 100 chrVII:205307-206093 4.43e-01 100 chrVII:254118-254734 3.01e-01 100 chrVII:255210-255768 4.87e-01 100 chrVII:276980-278679 1.35e-01 100 chrVII:287164-287661 9.35e-03 19_[-2(1.13e-05)]_52 chrVII:310385-312281 9.90e-01 100 chrVII:316737-317402 6.70e-01 100 chrVII:319214-320122 5.49e-02 100 chrVII:323390-324112 5.34e-01 100 chrVII:324336-324679 3.35e-01 100 chrVII:328366-329009 6.90e-01 100 chrVII:345835-346653 1.69e-01 100 chrVII:364887-366698 7.34e-01 100 chrVII:371185-371800 4.85e-01 100 chrVII:405460-406120 8.76e-01 100 chrVII:412036-412588 1.69e-10 40_[+1(8.27e-10)]_12_[-3(2.96e-08)]_\ 1 chrVII:422882-423479 9.84e-02 100 chrVII:437242-439881 1.64e-01 100 chrVII:440292-442867 7.51e-01 100 chrVII:479172-482869 1.45e-01 100 chrVII:483419-483752 5.64e-01 100 chrVII:531285-532091 3.38e-04 10_[-1(5.57e-08)]_66 chrVII:533814-535197 9.77e-01 100 chrVII:541713-542186 5.90e-01 100 chrVII:544405-544875 2.15e-02 29_[-3(2.70e-05)]_48 chrVII:546439-546781 6.95e-03 18_[-2(5.61e-05)]_53 chrVII:555063-556677 8.27e-01 100 chrVII:556992-557741 7.87e-01 100 chrVII:561306-561739 6.56e-01 100 chrVII:609333-610026 9.83e-01 100 chrVII:631503-631942 7.76e-01 100 chrVII:648771-649372 4.31e-01 100 chrVII:661508-661953 5.34e-01 100 chrVII:681768-682693 2.98e-01 100 chrVII:700406-701273 8.42e-01 100 chrVII:702952-704034 1.82e-01 100 chrVII:706906-707185 8.50e-01 100 chrVII:726394-728349 1.30e-01 100 chrVII:730953-731380 3.23e-12 32_[+2(1.05e-10)]_[-1(2.38e-07)]_15 chrVII:736192-736977 7.27e-01 100 chrVII:738847-739512 1.24e-15 4_[+2(3.37e-11)]_[-1(1.11e-11)]_43 chrVII:757604-758073 9.96e-01 100 chrVII:766170-766494 8.87e-02 100 chrVII:774123-774617 3.52e-15 34_[+3(4.35e-12)]_11_[-1(2.36e-10)]_\ 8 chrVII:779386-779931 2.03e-10 13_[+3(8.62e-07)]_10_[-1(1.10e-10)]_\ 30 chrVII:780383-781296 4.00e-01 100 chrVII:787998-788757 5.92e-01 100 chrVII:794238-794572 1.79e-05 67_[+3(4.32e-09)]_10 chrVII:823343-823705 1.69e-10 13_[+3(2.96e-08)]_12_[-1(8.27e-10)]_\ 28 chrVII:828486-828979 7.71e-05 49_[+1(6.94e-09)]_27 chrVII:845326-846020 2.41e-11 31_[+3(1.55e-08)]_9_[-1(1.75e-10)]_\ 13 chrVII:856450-857686 2.54e-01 100 chrVII:876033-878151 4.19e-01 100 chrVII:878571-879027 3.64e-01 100 chrVII:879662-880008 6.72e-01 100 chrVII:882772-883947 2.09e-01 100 chrVII:930554-931676 9.95e-01 100 chrVII:939032-939735 9.96e-01 100 chrVII:968761-969398 2.08e-01 100 chrVII:986366-987163 4.86e-01 100 chrVII:1003932-1004444 7.46e-01 100 chrVIII:34397-36138 4.44e-01 100 chrVIII:62604-62913 1.61e-01 100 chrVIII:74802-76429 2.02e-01 100 chrVIII:103739-105473 9.95e-01 100 chrVIII:115868-116426 7.06e-16 18_[+1(1.56e-09)]_[-2(6.93e-12)]_29 chrVIII:125913-127504 9.20e-01 100 chrVIII:134082-134721 8.94e-08 8_[-1(1.11e-11)]_68 chrVIII:145933-146462 9.81e-01 100 chrVIII:148953-149482 1.00e+00 100 chrVIII:174864-175394 8.89e-02 100 chrVIII:205952-206420 8.88e-01 100 chrVIII:237750-238136 8.21e-05 17_[-3(5.42e-08)]_60 chrVIII:296668-297203 8.97e-01 100 chrVIII:358304-358780 1.70e-04 48_[-3(5.42e-08)]_29 chrVIII:381450-382433 7.08e-01 100 chrVIII:382683-383607 1.84e-01 100 chrVIII:388648-389004 4.06e-01 100 chrVIII:451238-453011 3.76e-01 100 chrVIII:455052-456300 3.81e-02 100 chrVIII:466816-467362 9.95e-01 100 chrVIII:467513-467799 2.10e-01 100 chrVIII:475315-475911 9.03e-01 100 chrVIII:505823-506205 4.09e-01 100 chrVIII:555773-556455 9.44e-01 100 chrVIII:562334-562593 3.86e-03 50_[+3(1.19e-06)]_27 chrX:18822-19122 8.52e-01 100 chrX:58749-59427 1.73e-05 70_[+1(1.56e-09)]_6 chrX:73368-76517 9.66e-01 100 chrX:90014-90426 5.82e-01 100 chrX:101090-101715 7.25e-01 100 chrX:115776-116342 4.41e-01 100 chrX:139067-140458 6.61e-01 100 chrX:157458-157959 5.32e-01 100 chrX:196834-197447 8.90e-01 100 chrX:204541-205047 3.59e-05 29_[-1(5.57e-08)]_47 chrX:227752-228666 4.64e-01 100 chrX:233695-234430 5.85e-01 100 chrX:348920-349451 8.64e-01 100 chrX:354011-354474 2.17e-06 64_[+2(8.01e-09)]_7 chrX:355178-355754 1.71e-03 45_[+3(2.70e-05)]_32 chrX:374199-374889 3.74e-11 20_[+1(6.94e-09)]_[-2(1.28e-09)]_27 chrX:377831-378064 5.26e-01 100 chrX:378223-378758 3.54e-01 100 chrX:390803-391595 9.43e-01 100 chrX:391821-392197 3.49e-02 100 chrX:396008-397138 6.33e-01 100 chrX:414732-415255 2.18e-15 33_[+2(4.44e-10)]_[-1(2.25e-09)]_14 chrX:415652-416245 3.18e-06 41_[+1(1.06e-07)]_35 chrX:422677-423236 1.24e-09 36_[+3(1.47e-07)]_11_[-1(2.52e-08)]_\ 6 chrX:424272-424715 2.90e-10 31_[-2(4.44e-10)]_40 chrX:442377-442921 9.17e-01 100 chrX:459069-459740 3.96e-01 100 chrX:517643-518079 6.59e-10 10_[+1(5.54e-07)]_[-2(8.06e-10)]_37 chrX:523836-524321 2.80e-11 25_[-2(8.24e-11)]_46 chrX:531581-532214 2.75e-06 18_[-1(1.75e-10)]_58 chrX:537974-538946 3.45e-01 100 chrX:540843-541890 9.84e-01 100 chrX:542792-543453 6.91e-01 100 chrX:606040-607066 5.93e-01 100 chrX:607895-609038 7.57e-01 100 chrX:617687-618159 6.55e-09 57_[+2(2.32e-08)]_14 chrX:620295-621013 5.18e-01 100 chrX:650904-651594 4.65e-01 100 chrX:663650-664379 2.44e-01 100 chrX:668878-669047 9.72e-01 100 chrX:669218-670566 9.31e-01 100 chrX:702909-703845 8.20e-01 100 chrX:745064-745748 6.99e-02 100 chrXI:2-180 1.45e-01 100 chrXI:775-1083 2.05e-01 100 chrXI:46603-47013 5.64e-07 9_[-2(2.35e-10)]_62 chrXI:67809-68031 7.48e-01 100 chrXI:74424-74814 4.06e-08 66_[+2(1.05e-10)]_5 chrXI:83965-84578 1.11e-05 37_[-1(8.39e-08)]_39 chrXI:99675-99958 6.64e-01 100 chrXI:108518-110151 2.67e-01 100 chrXI:140777-141469 9.49e-01 100 chrXI:141701-142776 3.00e-01 100 chrXI:158202-159736 1.96e-01 100 chrXI:162276-162851 1.97e-06 6_[-2(1.28e-09)]_65 chrXI:177807-178250 3.88e-01 100 chrXI:194620-195015 5.40e-01 100 chrXI:202393-203296 1.39e-01 100 chrXI:219593-220119 9.64e-01 100 chrXI:230137-230614 9.83e-01 100 chrXI:235736-236254 7.82e-01 100 chrXI:282797-284796 8.41e-01 100 chrXI:302458-303403 3.64e-01 100 chrXI:307985-308455 1.47e-04 18_[-3(2.96e-08)]_59 chrXI:313209-314013 8.80e-01 100 chrXI:326087-327570 1.29e-01 100 chrXI:333608-334978 9.81e-01 100 chrXI:355860-356829 7.65e-01 100 chrXI:382191-382441 3.86e-01 100 chrXI:431362-431648 3.37e-01 100 chrXI:457967-458967 5.74e-01 100 chrXI:490355-490527 8.25e-01 100 chrXI:490726-491270 5.86e-12 30_[+2(3.61e-10)]_[-1(8.39e-08)]_17 chrXI:512919-513621 9.73e-01 100 chrXI:513883-514494 1.96e-01 100 chrXI:517784-518122 7.96e-01 100 chrXI:558669-559438 3.78e-01 100 chrXI:578735-579329 3.50e-05 45_[-1(1.16e-08)]_31 chrXI:617612-619379 9.66e-01 100 chrXI:666617-666799 1.09e-03 14_[+3(3.92e-07)]_11_[+3(4.86e-06)]_\ [+3(1.09e-05)]_6 chrXII:34975-35716 9.55e-01 100 chrXII:36675-37318 6.16e-01 100 chrXII:47420-49221 3.39e-01 100 chrXII:92234-92732 5.11e-01 100 chrXII:136071-136895 1.88e-01 100 chrXII:167704-168237 9.54e-16 32_[+1(9.83e-08)]_9_[-2(8.24e-11)]_\ 6 chrXII:198365-199864 6.76e-02 100 chrXII:201666-202741 6.06e-03 100 chrXII:204191-204864 3.84e-02 46_[+2(4.14e-05)]_25 chrXII:212215-212771 9.62e-02 100 chrXII:214627-215063 9.03e-01 100 chrXII:231991-234219 6.51e-01 100 chrXII:241605-242020 2.39e-01 100 chrXII:262854-263965 2.15e-01 100 chrXII:282597-284105 8.49e-01 100 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chrXIII:747662-748146 6.94e-11 46_[+1(6.94e-09)]_[-2(1.28e-09)]_1 chrXIII:753005-755261 4.37e-01 100 chrXIII:768181-768449 8.28e-01 100 chrXIII:797767-798202 2.97e-01 100 chrXIII:802332-802899 7.62e-01 100 chrXIII:807988-808551 5.73e-10 35_[+1(6.34e-10)]_10_[-3(2.00e-07)]_\ 8 chrXIII:837739-838408 5.27e-01 100 chrXIII:861182-861536 7.58e-01 100 chrXIII:872713-873056 2.80e-01 100 chrXIII:887014-889359 9.69e-01 100 chrXIV:6616-7004 2.47e-04 11_[-3(6.14e-07)]_66 chrXIV:61952-64531 8.54e-01 100 chrXIV:88949-89714 9.48e-01 100 chrXIV:95998-96473 8.58e-07 64_[+1(1.10e-10)]_12 chrXIV:102572-103207 9.91e-01 100 chrXIV:104601-105100 7.06e-16 15_[+2(6.93e-12)]_[-1(1.56e-09)]_32 chrXIV:241001-241868 9.29e-01 100 chrXIV:242044-242221 5.01e-02 100 chrXIV:301437-302308 2.64e-01 100 chrXIV:302598-303825 1.25e-01 100 chrXIV:330778-331098 4.04e-01 100 chrXIV:374642-375117 8.10e-05 45_[+3(5.42e-08)]_32 chrXIV:413556-416196 6.67e-01 100 chrXIV:442793-444787 8.16e-01 100 chrXIV:461296-462317 6.43e-01 100 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chrXVI:775645-776035 3.00e-05 7_[-2(3.02e-09)]_64 chrXVI:785593-785892 2.24e-01 100 chrXVI:794255-796070 6.40e-01 100 chrXVI:810574-811329 4.68e-01 100 chrXVI:819326-819940 6.01e-01 100 chrXVI:829017-829342 4.68e-03 25_[-1(1.16e-06)]_51 chrXVI:856722-857128 3.52e-15 32_[+3(4.35e-12)]_11_[-1(2.36e-10)]_\ 10 chrXVI:860163-860692 2.41e-11 7_[+3(1.55e-08)]_9_[-1(1.75e-10)]_\ 37 chrXVI:880104-880547 1.47e-19 29_[+1(1.11e-11)]_[-2(3.37e-11)]_18 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************