Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.027146 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.056872 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.07249 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.012922 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background Finished invoke: name: bg status: 0 time: 0.01364 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 922.106877 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/seqs-shuffled Finished invoke: name: dreme status: 0 time: 35.141236 Invoking: centrimo -seqlen 436 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.164426 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.531087 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background -primary GGTCCSSGGTTCGATYCCSSGHKDGRKCRT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.474741 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background -primary DDSSCBYWAMCMACTRVGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.46483 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background -primary TGTAACGGCTATCACATCACGCTTTCACCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.2942 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background -primary AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.346025 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background -primary CCCMTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.232559 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background -primary GCCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.224169 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background -primary CGYGGAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.238491 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background -primary AMACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.249891 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background --motif GGTCCSSGGTTCGATYCCSSGHKDGRKCRT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa Finished invoke: name: fimo1 status: 0 time: 0.329038 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background --motif DDSSCBYWAMCMACTRVGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa Finished invoke: name: fimo2 status: 0 time: 0.325356 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background --motif TGTAACGGCTATCACATCACGCTTTCACCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa Finished invoke: name: fimo3 status: 0 time: 0.32063 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background --motif AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa Finished invoke: name: fimo4 status: 0 time: 0.235116 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background --motif CCCMTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa Finished invoke: name: fimo5 status: 0 time: 0.217482 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background --motif GCCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa Finished invoke: name: fimo6 status: 0 time: 0.190985 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background --motif CGYGGAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa Finished invoke: name: fimo7 status: 0 time: 0.209868 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background --motif AMACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/RM11-1A--CAT8.fa Finished invoke: name: fimo8 status: 0 time: 0.190704 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/summary.tsv Finished invoke: name: summary status: 0 time: 0.141375 Done