******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:46182-46381 1.0000 100 chrI:71780-73268 1.0000 100 chrI:81866-82409 1.0000 100 chrI:138980-139384 1.0000 100 chrI:166168-166557 1.0000 100 chrI:181124-181543 1.0000 100 chrI:182236-183205 1.0000 100 chrII:9451-9891 1.0000 100 chrII:36235-36617 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chrXV:353887-354313 1.0000 100 chrXV:378282-379549 1.0000 100 chrXV:407614-408112 1.0000 100 chrXV:438469-439019 1.0000 100 chrXV:444665-446239 1.0000 100 chrXV:464280-464802 1.0000 100 chrXV:487426-487885 1.0000 100 chrXV:488320-488544 1.0000 100 chrXV:504945-505495 1.0000 100 chrXV:571763-572559 1.0000 100 chrXV:594304-594655 1.0000 100 chrXV:639141-639428 1.0000 100 chrXV:663518-664087 1.0000 100 chrXV:678535-679195 1.0000 100 chrXV:710120-710496 1.0000 100 chrXV:758947-759476 1.0000 100 chrXV:779684-780987 1.0000 100 chrXV:841531-842853 1.0000 100 chrXV:853740-854760 1.0000 100 chrXV:866434-867854 1.0000 100 chrXV:901436-901657 1.0000 100 chrXV:968146-968427 1.0000 100 chrXV:976377-976643 1.0000 100 chrXV:978822-979150 1.0000 100 chrXV:979741-981062 1.0000 100 chrXV:1003956-1004392 1.0000 100 chrXV:1025719-1026038 1.0000 100 chrXV:1027921-1029308 1.0000 100 chrXVI:55837-56430 1.0000 100 chrXVI:75390-76799 1.0000 100 chrXVI:108865-114342 1.0000 100 chrXVI:123423-124554 1.0000 100 chrXVI:141213-142415 1.0000 100 chrXVI:188611-188931 1.0000 100 chrXVI:209973-210476 1.0000 100 chrXVI:280023-280237 1.0000 100 chrXVI:280574-281390 1.0000 100 chrXVI:281541-281923 1.0000 100 chrXVI:302660-304230 1.0000 100 chrXVI:338748-339133 1.0000 100 chrXVI:378643-378988 1.0000 100 chrXVI:406196-407797 1.0000 100 chrXVI:408018-408248 1.0000 100 chrXVI:432667-434107 1.0000 100 chrXVI:435655-436183 1.0000 100 chrXVI:451686-453030 1.0000 100 chrXVI:519693-520532 1.0000 100 chrXVI:529966-531269 1.0000 100 chrXVI:560050-560486 1.0000 100 chrXVI:572174-572610 1.0000 100 chrXVI:577796-579755 1.0000 100 chrXVI:581852-582378 1.0000 100 chrXVI:610495-611577 1.0000 100 chrXVI:622035-623137 1.0000 100 chrXVI:642321-643334 1.0000 100 chrXVI:653886-655032 1.0000 100 chrXVI:689377-689854 1.0000 100 chrXVI:692825-694903 1.0000 100 chrXVI:699609-700695 1.0000 100 chrXVI:731658-733137 1.0000 100 chrXVI:744051-744549 1.0000 100 chrXVI:768368-769491 1.0000 100 chrXVI:775651-776047 1.0000 100 chrXVI:794482-794836 1.0000 100 chrXVI:810572-811341 1.0000 100 chrXVI:819343-820360 1.0000 100 chrXVI:821636-822197 1.0000 100 chrXVI:856720-857141 1.0000 100 chrXVI:860175-860700 1.0000 100 chrXVI:879862-880574 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 586 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58600 N= 586 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAT8/background): A 0.305 C 0.195 G 0.195 T 0.305 ******************************************************************************** ******************************************************************************** MOTIF GGTCCSSGGTTCGATYCCSSGHKDGRKCRT MEME-1 width = 30 sites = 96 llr = 1846 E-value = 3.5e-393 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCCSSGGTTCGATYCCSSGHKDGRKCRT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 233:2:12::::2a2::::2:322131253 pos.-specific C 3118553::::a::24a75324222227:1 probability G 661:2357a:::8:2:::455:43545:31 matrix T ::62:21::aa:::56:31:3333113:16 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.6 **** * * Relative 1.4 * ****** * Entropy 1.2 * ******* * * (27.7 bits) 0.9 * * ******* *** * 0.7 ** * ******** ***** * 0.5 ** *********** ******* * *** 0.2 ************** ******** ****** 0.0 ------------------------------ Multilevel GGTCCCGGGTTCGATTCCCGGCGGGGGCAT consensus CAATAGCA A C TGCTTTT ATAGA sequence G A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCCSSGGTTCGATYCCSSGHKDGRKCRT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:1256748-1257275 - 46 3.40e-14 CCCAAGCATG GGGCCCGGGTTCGATTCCCGGCTTCCGCAT TTTTTGTGCA chrIII:142420-142954 - 63 3.40e-14 CATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCAT CTTTTTTACT chrXV:226328-226893 - 50 1.41e-13 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCAA ATTTTTTGTT chrIV:83346-83832 + 51 1.41e-13 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCAA GTTTAATTTT chrXVI:860175-860700 + 34 6.24e-13 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCAG ATTTTATTTT chrX:531552-532240 + 24 6.24e-13 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCAG TTTCTTTTCT chrVI:180649-181273 - 62 6.24e-13 CCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCAG TCCTTTTTTT chrVIII:475502-475915 - 47 2.85e-12 ACACGGCAAA GGTCCCGAGTTCGATCCTCGGTTGGAACAT TTTAACATCG chrIV:1075164-1075757 - 61 2.85e-12 ACACGGCAAA GGTCCCGAGTTCGATCCTCGGTTGGAACAT TTGTTTTTTC chrXIV:631664-632106 - 10 8.41e-12 GGGTGCGGGA GGTCCCGGGTTCGAGTCCCGGCTCGCCCCC ATTGATTTA chrIV:1016982-1017478 - 26 1.13e-11 CTCACCGTGG AGACCGGGGTTCGACTCCCCGCTTCGGAGT TTCTTTTTTA chrXII:214728-215071 - 33 1.74e-11 GCAAGGAAGA GGTCATCGGTTCGATTCCGGTTGCGTCCAT TTATTTTTTA chrXIV:569660-570096 - 38 2.01e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCAT TCTTTTTTTT chrXII:1051931-1052235 - 37 2.01e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCAT TATTTTTTTT chrV:443068-443365 - 35 2.01e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCAT ATTTTTTTTG chrII:197290-197856 + 16 2.01e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCAT TTTTTTGCAA chrXV:663518-664087 - 59 3.99e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCAT TTTTAAGAAT chrXIII:420326-420854 - 47 3.99e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCAT TTTTATCTCA chrVII:823335-823731 + 44 3.99e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCAT TTTTTGAAGA chrXVI:209973-210476 - 17 4.56e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAGT TTTCTTTTTG chrXIII:290592-291129 + 34 4.56e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAGT CTTCTTTTTG chrX:115717-116232 - 14 4.56e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAGT ATTTTTTATG chrVII:541714-542159 + 7 4.56e-11 CCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAGT GTTCTTTTTC chrVII:401432-401621 - 50 4.56e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAGT ATTTTTTTGA chrV:487085-487576 - 50 4.56e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAGT ATTCGTTATA chrV:311722-312294 - 64 4.56e-11 AGGAAGA GGTCATCGGTTCGATTCCGGTTGCGTCCAA TGAAATCTTT chrV:176913-177440 + 16 4.56e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAGT ACTTTTTTGA chrII:644969-645412 + 70 4.56e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAGT T chrVIII:134086-134630 + 56 5.20e-11 TTGATCCGGA CAACCCCGGTTCGAATCCGGGTAGGACCTT TTTTTGCTAA chrIV:644887-645376 - 71 5.20e-11 . CAACCCCGGTTCGAATCCGGGTAGGACCTT TTTTAACTGT chrIII:168089-168550 - 31 5.20e-11 TTGATCCGGA CAACCCCGGTTCGAATCCGGGTAGGACCTT TTTTTGAATA chrXVI:581852-582378 + 41 8.72e-11 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCTT TCTTTTTTAT chrXIII:480382-480834 - 62 8.72e-11 TAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCTT CTTTTTTTGA chrIV:488447-489139 - 53 8.72e-11 ACACGGCGAA GATCCCGAGTTCGAACCTCGGTTGGATCAG AATCTTTTTT chrIII:151126-151524 - 8 8.72e-11 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCTT TCTTTTT chrXI:307928-308439 - 10 9.89e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCAA TTTTTTTTT chrX:378212-378582 + 58 9.89e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCAA TTTTTTGTTT chrVIII:85199-85382 - 57 9.89e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCAA TTTTTTTTGA chrVII:412003-412569 - 57 9.89e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCAA GTTTTATTTT chrV:438519-438943 + 64 9.89e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCAA TTTTTTT chrXIV:96007-96470 - 52 1.12e-10 TCCAAGGTGG GGACACGGGTTCGATTCTCGTACCGCTCAA ATTTTTTGAT chrVII:779414-779920 + 42 1.12e-10 TCCAAGGTGG GGACACGGGTTCGATTCTCGTACCGCTCAA GATTACTTTT chrII:350633-351072 + 68 1.62e-10 TTGATCCGGA CAACCCCGGTTCGAATCCGGGTAAGACCTT ATT chrX:414759-415270 + 46 2.06e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCTA ATATTTTTTT chrIX:300023-300488 - 22 2.06e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCTA TCTTTTTACC chrXVI:856720-857141 + 66 2.92e-10 GCATGGGAGA GGTCTCCGGTTCGATTCCGGACTCGTCCAT TTTAA chrXIII:320947-321326 - 60 2.92e-10 GCATGGGAGA GGTCTCCGGTTCGATTCCGGACTCGTCCAT TTTTTATTTT chrIV:1175740-1176079 + 14 2.92e-10 ATAATCTGAA GGTCGAGAGTTCGAACCTCCCCTGGAGCAT TTTTGCCGAG chrIV:802540-802993 - 14 3.28e-10 TTGATCCGGA CAACCCCGGTTCGAATCCGGGTAGGACCTC TTTTTATTTT chrV:130843-131353 - 33 3.67e-10 TTGATCCGAA CAACCCCGGTTCGAATCCGGGTAAGACCTA TTTTTTTCCC chrXV:976377-976643 + 5 6.40e-10 TGAA GGTCGAGAGTTCGAACCTCCCCTGGAGCAA TATTTTTTTG chrXI:219746-220113 + 60 6.40e-10 GCATGGGAGA GGTCTCCGGTTCGATTCCGGACTCGTCCAA TCTTTTTATA chrVII:774122-774686 + 39 6.40e-10 GCATGGGAGA GGTCTCCGGTTCGATTCCGGACTCGTCCAA ATTTTTTTAC chrXIII:463360-463885 + 25 7.94e-10 GTCGCGTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAGA TTTTTTTATC chrXII:426936-427463 + 26 7.94e-10 GTCGCGTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAGA ATTTTTTTAA chrX:204546-205098 + 6 7.94e-10 GTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAGA TTTTTTTTGG chrIX:336040-336636 - 60 7.94e-10 GTCGCGTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAGA TTTTTTTACC chrIV:568706-569341 + 34 7.94e-10 GTCGCGTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAGA ATTTTTTTTA chrII:405683-406291 + 66 7.94e-10 GTCGCGTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAGA TTTTT chrXV:464280-464802 + 32 8.83e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAGCTCGCCCCT TTTATTTTTA chrXII:92408-92926 + 5 8.83e-10 GAGA GGCCCTGGGTTCAATTCCCAGCTCGCCCCT TTATTTTCTT chrIV:884257-884656 + 59 1.09e-09 GCAACGCGAC CGTCGTGGGTTCAAACCCCACCTCGAGCAC TTTCTCTTTT chrXVI:435655-436183 - 23 1.34e-09 CAAATCTGTT GGTCCTTAGTTCGATCCTGAGTGCGAGCTT TCTTTTTTTC chrXIII:572658-573145 - 31 1.48e-09 ATAATCTGAA GGTCGAGAGTTCGAACCTCCCCTGGAGCAC ATTTTTTTTC chrVIII:466818-467260 + 44 1.81e-09 GTAATGCAAA GGTCGCTAGTTCAATTCTGGCAGGTGGCAT TATACCGGTA chrXV:438469-439019 + 16 2.20e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCTATGAGGAGT TCTTTATTTT chrXI:578541-579599 + 12 2.20e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCTATGAGGAGT TCTTTACTTT chrVIII:115911-116378 - 12 2.67e-09 GTAATGTGGA GATCATCGGTTCAAATCCGATTGGAAGCAT TTTTTGCATT chrII:266190-266710 + 22 2.67e-09 GTAATGTGGA GATCATCGGTTCAAATCCGATTGGAAGCAT TTTTTTGAAT chrXIV:632424-632902 + 31 3.23e-09 TTAATCGCAA GATCGTGAGTTCAACCCTCACTGGGGTCGT TTTTTTTCTT chrXII:975777-976193 - 47 3.23e-09 TTAATCGCAA GATCGTGAGTTCAACCCTCACTGGGGTCGT TTATTTTTTT chrXI:162241-162760 - 36 4.27e-09 CTAATCAGAA GATTATGGGTTCGACCCCCATCGTGAGTGT TTTTTACACC chrIX:174885-175229 + 68 5.12e-09 GTAATGTGGA GATCATCGGTTCAAATCCGATTGGAAGCAA TTT chrIV:1095135-1095659 - 22 7.31e-09 GATATCTGGA GGTCCTGTGTTCGATCCACAGAGTTCGCAT TTTTATTTTT chrXI:490767-491272 + 43 7.97e-09 CGAACCAGAA GATTCCAGGTTCAAGTCCTGGCGGGGAAGA ATTTTTTTAC chrIV:619727-620193 - 58 7.97e-09 CGAACCAGAA GATTCCAGGTTCAAGTCCTGGCGGGGAAGA TTTTTTATAC chrXI:302710-303243 + 69 1.43e-08 GCAATCGAAG GGTTGCAGGTTCAATTCCTGTCCGTTTCAT TT chrXIII:131642-132084 - 11 1.55e-08 CTAATCAGAA GATTATGGGTTCGACCCCCATCGTGAGTGC TTTGTTTCTT chrX:374187-374819 - 52 1.55e-08 CTAATCAGAA GATTATGGGTTCGACCCCCATCGTGAGTGC TTTGTTTCTT chrX:355176-355754 + 2 1.55e-08 A GATTATGGGTTCGACCCCCATCGTGAGTGC TTTGTTTCTT chrV:492195-492567 - 20 1.55e-08 CGAACCAGAA GATTCCAGGTTCAAGTCCTGGCGGGGAAGG ATTATTTTTC chrXIII:258985-259385 - 22 1.68e-08 TGGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGTCGT TATTTTTTGC chrX:523513-524467 - 71 1.68e-08 . CCGCGCAGGTTCGAGTCCTGCAGTTGTCGT TATTTTTTAT chrIV:437556-438128 + 33 1.68e-08 TGGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGTCGT CATTTTTATA chrII:226968-227354 + 17 1.68e-08 TGGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGTCGT TATTTTTTGG chrXVI:622035-623137 - 3 1.97e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAGAATTCGCAT TT chrVIII:358294-358751 - 5 1.97e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAGAATTCGCAT ATTT chrXIII:379048-379603 - 27 2.49e-08 GCAATCGAAG GGTTGCAGGTTCAATTCCTGTCCGTTTCAA TTTATTTTTT chrXIII:362929-363313 + 36 2.89e-08 GTGGCCGATG AAACCCTGGTTCGATTCTAGGAGATGGCAT TTTCTTTTTT chrXVI:689377-689854 + 53 4.82e-08 TGGGCTCTGC CCGCGCTGGTTCAAATCCTGCTGGTGTCGT ATTATTTTTT chrV:288165-288724 - 48 4.82e-08 TGGGCTCTGC CCGCGCTGGTTCAAATCCTGCTGGTGTCGT TTTTTTTATT chrIV:519655-519963 + 39 4.82e-08 GGACGGTTGT CCGCGCGAGTTCGAACCTCGCATCCTTCAA TAACTTATTT chrII:347413-347977 + 13 8.30e-08 GGACGGTTGT CCGCGCGAGTTCGAACCTCGCATCCTTCAG TAATATTTTT chrII:9451-9891 + 17 8.30e-08 GGACGGTTGT CCGCGCGAGTTCGAACCTCGCATCCTTCAG TATTTTTTTT chrXIII:837745-838237 + 47 1.29e-07 GAAATCTTGA GATCGGGCGTTCGACTCGCCCCCGGGAGAT ATTTTTTTAC chrX:542727-543271 - 6 1.29e-07 GAAATCTTGA GATCGGGCGTTCGACTCGCCCCCGGGAGAT TTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCCSSGGTTCGATYCCSSGHKDGRKCRT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1256748-1257275 3.4e-14 45_[-1]_25 chrIII:142420-142954 3.4e-14 62_[-1]_8 chrXV:226328-226893 1.4e-13 49_[-1]_21 chrIV:83346-83832 1.4e-13 50_[+1]_20 chrXVI:860175-860700 6.2e-13 33_[+1]_37 chrX:531552-532240 6.2e-13 23_[+1]_47 chrVI:180649-181273 6.2e-13 61_[-1]_9 chrVIII:475502-475915 2.8e-12 46_[-1]_24 chrIV:1075164-1075757 2.8e-12 60_[-1]_10 chrXIV:631664-632106 8.4e-12 9_[-1]_61 chrIV:1016982-1017478 1.1e-11 25_[-1]_45 chrXII:214728-215071 1.7e-11 32_[-1]_38 chrXIV:569660-570096 2e-11 37_[-1]_33 chrXII:1051931-1052235 2e-11 36_[-1]_34 chrV:443068-443365 2e-11 34_[-1]_36 chrII:197290-197856 2e-11 15_[+1]_55 chrXV:663518-664087 4e-11 58_[-1]_12 chrXIII:420326-420854 4e-11 46_[-1]_24 chrVII:823335-823731 4e-11 43_[+1]_27 chrXVI:209973-210476 4.6e-11 16_[-1]_54 chrXIII:290592-291129 4.6e-11 33_[+1]_37 chrX:115717-116232 4.6e-11 13_[-1]_57 chrVII:541714-542159 4.6e-11 6_[+1]_64 chrVII:401432-401621 4.6e-11 49_[-1]_21 chrV:487085-487576 4.6e-11 49_[-1]_21 chrV:311722-312294 4.6e-11 63_[-1]_7 chrV:176913-177440 4.6e-11 15_[+1]_55 chrII:644969-645412 4.6e-11 69_[+1]_1 chrVIII:134086-134630 5.2e-11 55_[+1]_15 chrIV:644887-645376 5.2e-11 70_[-1] chrIII:168089-168550 5.2e-11 30_[-1]_40 chrXVI:581852-582378 8.7e-11 40_[+1]_30 chrXIII:480382-480834 8.7e-11 61_[-1]_9 chrIV:488447-489139 8.7e-11 52_[-1]_18 chrIII:151126-151524 8.7e-11 7_[-1]_63 chrXI:307928-308439 9.9e-11 9_[-1]_61 chrX:378212-378582 9.9e-11 57_[+1]_13 chrVIII:85199-85382 9.9e-11 56_[-1]_14 chrVII:412003-412569 9.9e-11 56_[-1]_14 chrV:438519-438943 9.9e-11 63_[+1]_7 chrXIV:96007-96470 1.1e-10 51_[-1]_19 chrVII:779414-779920 1.1e-10 41_[+1]_29 chrII:350633-351072 1.6e-10 67_[+1]_3 chrX:414759-415270 2.1e-10 45_[+1]_25 chrIX:300023-300488 2.1e-10 21_[-1]_49 chrXVI:856720-857141 2.9e-10 65_[+1]_5 chrXIII:320947-321326 2.9e-10 59_[-1]_11 chrIV:1175740-1176079 2.9e-10 13_[+1]_57 chrIV:802540-802993 3.3e-10 13_[-1]_57 chrV:130843-131353 3.7e-10 32_[-1]_38 chrXV:976377-976643 6.4e-10 4_[+1]_66 chrXI:219746-220113 6.4e-10 59_[+1]_11 chrVII:774122-774686 6.4e-10 38_[+1]_32 chrXIII:463360-463885 7.9e-10 24_[+1]_46 chrXII:426936-427463 7.9e-10 25_[+1]_45 chrX:204546-205098 7.9e-10 5_[+1]_65 chrIX:336040-336636 7.9e-10 59_[-1]_11 chrIV:568706-569341 7.9e-10 33_[+1]_37 chrII:405683-406291 7.9e-10 65_[+1]_5 chrXV:464280-464802 8.8e-10 31_[+1]_39 chrXII:92408-92926 8.8e-10 4_[+1]_66 chrIV:884257-884656 1.1e-09 58_[+1]_12 chrXVI:435655-436183 1.3e-09 22_[-1]_48 chrXIII:572658-573145 1.5e-09 30_[-1]_40 chrVIII:466818-467260 1.8e-09 43_[+1]_27 chrXV:438469-439019 2.2e-09 15_[+1]_55 chrXI:578541-579599 2.2e-09 11_[+1]_59 chrVIII:115911-116378 2.7e-09 11_[-1]_59 chrII:266190-266710 2.7e-09 21_[+1]_49 chrXIV:632424-632902 3.2e-09 30_[+1]_40 chrXII:975777-976193 3.2e-09 46_[-1]_24 chrXI:162241-162760 4.3e-09 35_[-1]_35 chrIX:174885-175229 5.1e-09 67_[+1]_3 chrIV:1095135-1095659 7.3e-09 21_[-1]_49 chrXI:490767-491272 8e-09 42_[+1]_28 chrIV:619727-620193 8e-09 57_[-1]_13 chrXI:302710-303243 1.4e-08 68_[+1]_2 chrXIII:131642-132084 1.6e-08 10_[-1]_60 chrX:374187-374819 1.6e-08 51_[-1]_19 chrX:355176-355754 1.6e-08 1_[+1]_69 chrV:492195-492567 1.6e-08 19_[-1]_51 chrXIII:258985-259385 1.7e-08 21_[-1]_49 chrX:523513-524467 1.7e-08 70_[-1] chrIV:437556-438128 1.7e-08 32_[+1]_38 chrII:226968-227354 1.7e-08 16_[+1]_54 chrXVI:622035-623137 2e-08 2_[-1]_68 chrVIII:358294-358751 2e-08 4_[-1]_66 chrXIII:379048-379603 2.5e-08 26_[-1]_44 chrXIII:362929-363313 2.9e-08 35_[+1]_35 chrXVI:689377-689854 4.8e-08 52_[+1]_18 chrV:288165-288724 4.8e-08 47_[-1]_23 chrIV:519655-519963 4.8e-08 38_[+1]_32 chrII:347413-347977 8.3e-08 12_[+1]_58 chrII:9451-9891 8.3e-08 16_[+1]_54 chrXIII:837745-838237 1.3e-07 46_[+1]_24 chrX:542727-543271 1.3e-07 5_[-1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCCSSGGTTCGATYCCSSGHKDGRKCRT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCCSSGGTTCGATYCCSSGHKDGRKCRT width=30 seqs=96 chrIV:1256748-1257275 ( 46) GGGCCCGGGTTCGATTCCCGGCTTCCGCAT 1 chrIII:142420-142954 ( 63) GGCCCCCGGTTCGATTCCGGGCTTGCGCAT 1 chrXV:226328-226893 ( 50) GGCCCCCGGTTCGATTCCGGGCTTGCGCAA 1 chrIV:83346-83832 ( 51) GGCCCCCGGTTCGATTCCGGGCTTGCGCAA 1 chrXVI:860175-860700 ( 34) GGCCCCCGGTTCGATTCCGGGCTTGCGCAG 1 chrX:531552-532240 ( 24) GGCCCCCGGTTCGATTCCGGGCTTGCGCAG 1 chrVI:180649-181273 ( 62) GGCCCCCGGTTCGATTCCGGGCTTGCGCAG 1 chrVIII:475502-475915 ( 47) GGTCCCGAGTTCGATCCTCGGTTGGAACAT 1 chrIV:1075164-1075757 ( 61) GGTCCCGAGTTCGATCCTCGGTTGGAACAT 1 chrXIV:631664-632106 ( 10) GGTCCCGGGTTCGAGTCCCGGCTCGCCCCC 1 chrIV:1016982-1017478 ( 26) AGACCGGGGTTCGACTCCCCGCTTCGGAGT 1 chrXII:214728-215071 ( 33) GGTCATCGGTTCGATTCCGGTTGCGTCCAT 1 chrXIV:569660-570096 ( 38) GATCAGCGGTTCGATCCCGCTAGAGACCAT 1 chrXII:1051931-1052235 ( 37) GATCAGCGGTTCGATCCCGCTAGAGACCAT 1 chrV:443068-443365 ( 35) GATCAGCGGTTCGATCCCGCTAGAGACCAT 1 chrII:197290-197856 ( 16) GATCAGCGGTTCGATCCCGCTAGAGACCAT 1 chrXV:663518-664087 ( 59) CGTCCCCAGTTCGATCCTGGGCGAAATCAT 1 chrXIII:420326-420854 ( 47) CGTCCCCAGTTCGATCCTGGGCGAAATCAT 1 chrVII:823335-823731 ( 44) CGTCCCCAGTTCGATCCTGGGCGAAATCAT 1 chrXVI:209973-210476 ( 17) AGACCGGGGTTCGACTCCCCGTATCGGAGT 1 chrXIII:290592-291129 ( 34) AGACCGGGGTTCGACTCCCCGTATCGGAGT 1 chrX:115717-116232 ( 14) AGACCGGGGTTCGACTCCCCGTATCGGAGT 1 chrVII:541714-542159 ( 7) AGACCGGGGTTCGACTCCCCGTATCGGAGT 1 chrVII:401432-401621 ( 50) AGACCGGGGTTCGACTCCCCGTATCGGAGT 1 chrV:487085-487576 ( 50) AGACCGGGGTTCGACTCCCCGTATCGGAGT 1 chrV:311722-312294 ( 64) GGTCATCGGTTCGATTCCGGTTGCGTCCAA 1 chrV:176913-177440 ( 16) AGACCGGGGTTCGACTCCCCGTATCGGAGT 1 chrII:644969-645412 ( 70) AGACCGGGGTTCGACTCCCCGTATCGGAGT 1 chrVIII:134086-134630 ( 56) CAACCCCGGTTCGAATCCGGGTAGGACCTT 1 chrIV:644887-645376 ( 71) CAACCCCGGTTCGAATCCGGGTAGGACCTT 1 chrIII:168089-168550 ( 31) CAACCCCGGTTCGAATCCGGGTAGGACCTT 1 chrXVI:581852-582378 ( 41) GGTTAGGGGTTCGAGCCCCCTACAGGGCTT 1 chrXIII:480382-480834 ( 62) GGTTAGGGGTTCGAGCCCCCTACAGGGCTT 1 chrIV:488447-489139 ( 53) GATCCCGAGTTCGAACCTCGGTTGGATCAG 1 chrIII:151126-151524 ( 8) GGTTAGGGGTTCGAGCCCCCTACAGGGCTT 1 chrXI:307928-308439 ( 10) CGTCCCCAGTTCGATCCTGGGCGAAATCAA 1 chrX:378212-378582 ( 58) CGTCCCCAGTTCGATCCTGGGCGAAATCAA 1 chrVIII:85199-85382 ( 57) CGTCCCCAGTTCGATCCTGGGCGAAATCAA 1 chrVII:412003-412569 ( 57) CGTCCCCAGTTCGATCCTGGGCGAAATCAA 1 chrV:438519-438943 ( 64) CGTCCCCAGTTCGATCCTGGGCGAAATCAA 1 chrXIV:96007-96470 ( 52) GGACACGGGTTCGATTCTCGTACCGCTCAA 1 chrVII:779414-779920 ( 42) GGACACGGGTTCGATTCTCGTACCGCTCAA 1 chrII:350633-351072 ( 68) CAACCCCGGTTCGAATCCGGGTAAGACCTT 1 chrX:414759-415270 ( 46) GGTTAGGGGTTCGAGCCCCCTACAGGGCTA 1 chrIX:300023-300488 ( 22) GGTTAGGGGTTCGAGCCCCCTACAGGGCTA 1 chrXVI:856720-857141 ( 66) GGTCTCCGGTTCGATTCCGGACTCGTCCAT 1 chrXIII:320947-321326 ( 60) GGTCTCCGGTTCGATTCCGGACTCGTCCAT 1 chrIV:1175740-1176079 ( 14) GGTCGAGAGTTCGAACCTCCCCTGGAGCAT 1 chrIV:802540-802993 ( 14) CAACCCCGGTTCGAATCCGGGTAGGACCTC 1 chrV:130843-131353 ( 33) CAACCCCGGTTCGAATCCGGGTAAGACCTA 1 chrXV:976377-976643 ( 5) GGTCGAGAGTTCGAACCTCCCCTGGAGCAA 1 chrXI:219746-220113 ( 60) GGTCTCCGGTTCGATTCCGGACTCGTCCAA 1 chrVII:774122-774686 ( 39) GGTCTCCGGTTCGATTCCGGACTCGTCCAA 1 chrXIII:463360-463885 ( 25) AGATCGGGGTTCAATTCCCCGTCGCGGAGA 1 chrXII:426936-427463 ( 26) AGATCGGGGTTCAATTCCCCGTCGCGGAGA 1 chrX:204546-205098 ( 6) AGATCGGGGTTCAATTCCCCGTCGCGGAGA 1 chrIX:336040-336636 ( 60) AGATCGGGGTTCAATTCCCCGTCGCGGAGA 1 chrIV:568706-569341 ( 34) AGATCGGGGTTCAATTCCCCGTCGCGGAGA 1 chrII:405683-406291 ( 66) AGATCGGGGTTCAATTCCCCGTCGCGGAGA 1 chrXV:464280-464802 ( 32) GGCCCTGGGTTCAATTCCCAGCTCGCCCCT 1 chrXII:92408-92926 ( 5) GGCCCTGGGTTCAATTCCCAGCTCGCCCCT 1 chrIV:884257-884656 ( 59) CGTCGTGGGTTCAAACCCCACCTCGAGCAC 1 chrXVI:435655-436183 ( 23) GGTCCTTAGTTCGATCCTGAGTGCGAGCTT 1 chrXIII:572658-573145 ( 31) GGTCGAGAGTTCGAACCTCCCCTGGAGCAC 1 chrVIII:466818-467260 ( 44) GGTCGCTAGTTCAATTCTGGCAGGTGGCAT 1 chrXV:438469-439019 ( 16) TGTCAGGGGTTCGAGCCCCCTATGAGGAGT 1 chrXI:578541-579599 ( 12) TGTCAGGGGTTCGAGCCCCCTATGAGGAGT 1 chrVIII:115911-116378 ( 12) GATCATCGGTTCAAATCCGATTGGAAGCAT 1 chrII:266190-266710 ( 22) GATCATCGGTTCAAATCCGATTGGAAGCAT 1 chrXIV:632424-632902 ( 31) GATCGTGAGTTCAACCCTCACTGGGGTCGT 1 chrXII:975777-976193 ( 47) GATCGTGAGTTCAACCCTCACTGGGGTCGT 1 chrXI:162241-162760 ( 36) GATTATGGGTTCGACCCCCATCGTGAGTGT 1 chrIX:174885-175229 ( 68) GATCATCGGTTCAAATCCGATTGGAAGCAA 1 chrIV:1095135-1095659 ( 22) GGTCCTGTGTTCGATCCACAGAGTTCGCAT 1 chrXI:490767-491272 ( 43) GATTCCAGGTTCAAGTCCTGGCGGGGAAGA 1 chrIV:619727-620193 ( 58) GATTCCAGGTTCAAGTCCTGGCGGGGAAGA 1 chrXI:302710-303243 ( 69) GGTTGCAGGTTCAATTCCTGTCCGTTTCAT 1 chrXIII:131642-132084 ( 11) GATTATGGGTTCGACCCCCATCGTGAGTGC 1 chrX:374187-374819 ( 52) GATTATGGGTTCGACCCCCATCGTGAGTGC 1 chrX:355176-355754 ( 2) GATTATGGGTTCGACCCCCATCGTGAGTGC 1 chrV:492195-492567 ( 20) GATTCCAGGTTCAAGTCCTGGCGGGGAAGG 1 chrXIII:258985-259385 ( 22) CCGCGCAGGTTCGAGTCCTGCAGTTGTCGT 1 chrX:523513-524467 ( 71) CCGCGCAGGTTCGAGTCCTGCAGTTGTCGT 1 chrIV:437556-438128 ( 33) CCGCGCAGGTTCGAGTCCTGCAGTTGTCGT 1 chrII:226968-227354 ( 17) CCGCGCAGGTTCGAGTCCTGCAGTTGTCGT 1 chrXVI:622035-623137 ( 3) GGTCCTGTGTTCGATCCACAGAATTCGCAT 1 chrVIII:358294-358751 ( 5) GGTCCTGTGTTCGATCCACAGAATTCGCAT 1 chrXIII:379048-379603 ( 27) GGTTGCAGGTTCAATTCCTGTCCGTTTCAA 1 chrXIII:362929-363313 ( 36) AAACCCTGGTTCGATTCTAGGAGATGGCAT 1 chrXVI:689377-689854 ( 53) CCGCGCTGGTTCAAATCCTGCTGGTGTCGT 1 chrV:288165-288724 ( 48) CCGCGCTGGTTCAAATCCTGCTGGTGTCGT 1 chrIV:519655-519963 ( 39) CCGCGCGAGTTCGAACCTCGCATCCTTCAA 1 chrII:347413-347977 ( 13) CCGCGCGAGTTCGAACCTCGCATCCTTCAG 1 chrII:9451-9891 ( 17) CCGCGCGAGTTCGAACCTCGCATCCTTCAG 1 chrXIII:837745-838237 ( 47) GATCGGGCGTTCGACTCGCCCCCGGGAGAT 1 chrX:542727-543271 ( 6) GATCGGGCGTTCGACTCGCCCCCGGGAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCCSSGGTTCGATYCCSSGHKDGRKCRT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41606 bayes= 9.85752 E= 3.5e-393 -87 36 153 -387 -17 -106 170 -1323 -29 -123 -91 88 -1323 202 -1323 -55 -41 142 9 -287 -328 133 58 -70 -170 82 139 -255 -48 -323 190 -328 -1323 -1323 236 -1323 -1323 -1323 -1323 171 -1323 -1323 -1323 171 -1323 236 -1323 -1323 -41 -1323 198 -1323 171 -1323 -1323 -1323 -62 -14 -32 62 -1323 106 -1323 96 -1323 236 -1323 -1323 -328 184 -323 -29 -487 139 90 -141 -87 73 139 -1323 -287 -6 142 -29 -23 102 -1323 17 -87 -14 94 -12 -55 -23 82 -12 -117 2 144 -117 17 -32 98 -141 -206 2 130 -29 -55 190 -323 -287 74 -264 77 -129 -12 -142 -142 91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCCSSGGTTCGATYCCSSGHKDGRKCRT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 96 E= 3.5e-393 0.166667 0.250000 0.562500 0.020833 0.270833 0.093750 0.635417 0.000000 0.250000 0.083333 0.104167 0.562500 0.000000 0.791667 0.000000 0.208333 0.229167 0.520833 0.208333 0.041667 0.031250 0.489583 0.291667 0.187500 0.093750 0.343750 0.510417 0.052083 0.218750 0.020833 0.729167 0.031250 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.229167 0.000000 0.770833 0.000000 1.000000 0.000000 0.000000 0.000000 0.197917 0.177083 0.156250 0.468750 0.000000 0.406250 0.000000 0.593750 0.000000 1.000000 0.000000 0.000000 0.031250 0.697917 0.020833 0.250000 0.010417 0.510417 0.364583 0.114583 0.166667 0.322917 0.510417 0.000000 0.041667 0.187500 0.520833 0.250000 0.260417 0.395833 0.000000 0.343750 0.166667 0.177083 0.375000 0.281250 0.208333 0.166667 0.343750 0.281250 0.135417 0.197917 0.531250 0.135417 0.343750 0.156250 0.385417 0.114583 0.072917 0.197917 0.479167 0.250000 0.208333 0.729167 0.020833 0.041667 0.510417 0.031250 0.333333 0.125000 0.281250 0.072917 0.072917 0.572917 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCCSSGGTTCGATYCCSSGHKDGRKCRT MEME-1 regular expression -------------------------------------------------------------------------------- [GC][GA][TA][CT][CAG][CG][GC][GA]GTTC[GA]AT[TC]C[CT][CG][GC][GT][CTA][GT][GTA]G[GA][GT][CA][AG][TA] -------------------------------------------------------------------------------- Time 333.06 secs. ******************************************************************************** ******************************************************************************** MOTIF DDSSCBYWAMCMACTRVGCCA MEME-2 width = 21 sites = 100 llr = 1308 E-value = 8.7e-173 ******************************************************************************** -------------------------------------------------------------------------------- Motif DDSSCBYWAMCMACTRVGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3421111365:3a::333::a pos.-specific C 2153733215a5:9:23:a7: probability G 4335121:1::2:::447::: matrix T 22:124452::::1a1:::3: bits 2.4 * * 2.1 * * 1.9 * * 1.6 * * * * Relative 1.4 * *** * * Entropy 1.2 * *** **** (18.9 bits) 0.9 ** *** **** 0.7 *** ****** ***** 0.5 *** ****** ***** 0.2 ******************* 0.0 --------------------- Multilevel GACGCTTTACCCACTGGGCCA consensus AGGC CCATA A ACA T sequence T G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYWAMCMACTRVGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXVI:689377-689854 - 7 1.10e-10 TTTCAAGTCT GTCGCCTTAACCACTCGGCCA TAGTGC chrXV:853740-854760 + 32 1.90e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCTGA chrXII:214728-215071 + 79 1.90e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA T chrIV:1150718-1151157 + 27 4.09e-10 AATAGCAGGC ATCGCCTTAACCACTCGGCCA CTGGGACTGA chrXV:353887-354313 + 36 5.19e-10 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCAGT chrXIV:104608-105042 - 37 5.19e-10 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTGA chrX:59007-59374 + 5 5.19e-10 GTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrVIII:115911-116378 + 58 5.19e-10 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCT chrIX:174885-175229 - 31 5.19e-10 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCG chrXVI:856720-857141 - 29 6.56e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCGAA chrXII:656837-657213 + 4 6.56e-10 GGG AGCGCGCTACCGACTACGCCA CACGCCCAAT chrXI:219746-220113 - 23 6.56e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCTAT chrVII:774122-774686 - 2 6.56e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA C chrXIII:258985-259385 + 77 1.28e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGT chrXII:167780-168263 + 27 1.28e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrIV:1305414-1305878 - 41 1.28e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTTA chrXIV:602080-602542 - 58 2.38e-09 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrXII:734593-734988 - 69 2.38e-09 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAAA chrIX:183298-183693 + 41 2.38e-09 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAGG chrXII:592326-592799 + 80 8.63e-09 CCTAAATCTG ACGCCTTAAACCACTCGGCCA chrX:617714-618163 - 38 8.63e-09 CCTAAATCTG ACGCCTTAAACCACTCGGCCA AACTCCCATT chrVII:115325-115731 - 17 8.63e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrIV:359344-359799 - 63 8.63e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrXII:605143-605613 + 77 1.02e-08 CTATAAGCAC GAAGCTCTAACCACTGAGCTA CAC chrXVI:622035-623137 + 68 1.95e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCATA chrXVI:560050-560486 + 44 1.95e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTCA chrXIV:374640-375100 - 56 1.95e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AGTCCGCTTA chrVIII:358294-358751 + 70 1.95e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVIII:237699-238126 + 50 1.95e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVI:157842-158217 + 1 1.95e-08 . GGCGCTCTCCCAACTGAGCTA AATCCGCTTC chrII:36235-36617 - 29 1.95e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrXV:340119-340584 + 43 3.54e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAG chrXI:490767-491272 - 6 3.54e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGG chrX:233642-234207 - 72 3.54e-08 CGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAA chrV:492195-492567 + 66 3.54e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAATAG chrXVI:581852-582378 - 4 4.69e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACA chrX:414759-415270 - 9 4.69e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCT chrV:435603-436010 + 41 4.69e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTCT chrIX:300023-300488 + 68 4.69e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrIV:1201523-1202021 - 35 4.69e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrIII:151126-151524 + 54 4.69e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTCT chrXV:228118-228558 - 50 5.39e-08 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrXII:962828-963275 + 27 5.39e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGTC chrXI:84008-84469 - 27 5.39e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCATA chrXI:74417-74809 - 68 5.39e-08 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrX:424261-424716 + 50 5.39e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCATC chrIII:127486-127915 - 73 5.39e-08 CAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCATT chrXIII:572658-573145 + 77 3.72e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTG chrX:390869-391358 + 25 3.72e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCACT chrXI:307928-308439 + 57 5.65e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrX:378212-378582 - 20 5.65e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrVII:823335-823731 - 6 5.65e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAA chrV:469271-469675 - 41 5.65e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAAT chrV:438519-438943 - 26 5.65e-07 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAA chrXIV:442758-443272 - 48 6.91e-07 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrXII:628087-628692 - 51 6.91e-07 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrVII:205304-205783 - 35 6.91e-07 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrXVI:775651-776047 + 10 1.60e-06 TTTGCAATC TGCTGCGCTACCACTGCGCCA TACGAGCTTT chrXVI:435655-436183 + 68 1.60e-06 ATTTGCAATC TGCTGCGCTACCACTGCGCCA TACGAGCTTT chrX:542727-543271 + 68 1.60e-06 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTAT chrX:354007-354489 - 53 1.60e-06 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTGA chrVI:210316-211142 + 1 1.60e-06 . CGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrVI:167188-167650 - 75 1.60e-06 TCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTCA chrII:642858-643257 + 44 1.60e-06 ATTTGCAATC TGCTGCGCTACCACTGCGCCA TACGAGCTTT chrXVI:744051-744549 - 41 1.91e-06 ATTACAAGTG CAACGCTCTACCACTAAGCTA AGGAGGCTTT chrVIII:466818-467260 - 8 1.91e-06 ATTACAAGTG CAACGCTCTACCACTAAGCTA AGGAGGC chrVII:1004034-1004416 - 48 1.91e-06 ATTACAAGTG CAACGCTCTACCACTAAGCTA AGGAGGCAAA chrVII:661536-661972 - 52 1.91e-06 ATTACAAGTG CAACGCTCTACCACTAAGCTA AGGAGGCAAA chrXIII:808092-808535 + 27 2.47e-06 ATCAGAACCG AAAGTGATAACCACTACACTA TAGGACCTTT chrVIII:134086-134630 - 20 2.47e-06 ATCAAAACCG AAAGTGATAACCACTACACTA TAGGACCGGA chrV:130843-131353 + 78 2.47e-06 ATCAAAACCG AAAGTGATAACCACTACACTA TA chrIV:802540-802993 + 59 2.47e-06 ATCAAAACCG AAAGTGATAACCACTACACTA TAGGACCGAC chrIV:520745-521176 - 69 2.47e-06 ATCAAAACCG AAAGTGATAACCACTACACTA TAGGACCCTA chrIII:168089-168550 + 76 2.47e-06 ATCAAAACCG AAAGTGATAACCACTACACTA TAGG chrII:350633-351072 - 32 2.47e-06 ATCAAAACCG AAAGTGATAACCACTACACTA TAAAACCCTT chrX:396571-397004 + 32 2.68e-06 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTA chrVI:162034-162390 - 73 2.68e-06 GGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTG chrIV:83346-83832 - 16 2.68e-06 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTAA chrXVI:338748-339133 + 2 3.16e-06 C CTGCGCGCTTCCACTGCGCCA CGGCGCTGCT chrXIII:195928-196307 + 76 3.16e-06 CGCCCAAAGC GAGAATCATACCACTAGACCA CACG chrX:517649-518087 + 39 3.16e-06 GTTATGAGCC CTGCGCGCTTCCACTGCGCCA CGGCGCTTAA chrVI:101015-101754 - 49 3.16e-06 CGCCCAAAGC GAGAATCATACCACTAGACCA CACGCCCGAA chrIII:149723-150195 - 18 3.16e-06 GTTATGAGCC CTGCGCGCTTCCACTGCGCCA CGGCGCTCAA chrI:138980-139384 - 27 3.16e-06 CGCCCAAAGC GAGAATCATACCACTAGACCA CACGCCCGTA chrXV:110851-111204 + 29 3.42e-06 TTGGAAGGGT GGGATGATAACCACTACACTA ACCGCCCGGG chrVII:779414-779920 - 6 3.42e-06 TTGGAAGGGT GGGATGATAACCACTACACTA ACCGC chrIV:411235-411660 + 60 5.45e-06 CGGGCACCCA AAGTCCCCACCCACACCACCA ATACGTAAAC chrV:78052-79464 - 13 5.87e-06 GTTCTTGTAC AAGGTTCTACCGACGACACCA TCGATGGACC chrX:415722-416242 + 77 6.80e-06 AATTGGAGTC GAAAGCTCTACCATTGAGCCA CCG chrVII:878529-879047 + 50 6.80e-06 AATTGGAGTC GAAAGCTCTACCATTGAGCCA CCGCTTCATC chrVII:287153-287653 + 75 6.80e-06 AATTGGAGTC GAAAGCTCTACCATTGAGCCA CCGCT chrXIV:6615-7006 + 13 7.31e-06 TCCCCACTCG TTACCCTGCCCCACTCAACCA TACCACTCCC chrIII:316225-316597 - 60 7.31e-06 TCCCCACTCG TTACCCTGCCCCACTCAACCA TACCACTCCC chrXVI:188611-188931 - 22 1.11e-05 AAGTCCATTA AGACCGGAAACCTCTACACCA GTTCTCCTTC chrXI:1-187 + 11 1.19e-05 ACCACACCCA CACACCACACCCACTACTCTA ACCCTATTCT chrIII:220501-223247 + 62 1.27e-05 GTCCAGGGAC CCGGCACAAACCACTTCACCT GATGGATCCA chrXV:274048-274972 - 45 1.99e-05 ACTACCATCG GCCTCCCCTACCACTGAACAA GAGGAATGCG chrIV:835750-837957 - 75 3.03e-05 CTTGG TTAGCAGCGACGACCGGGCCA CTTGCAGAAG chrV:69125-69294 - 12 3.60e-05 GCCGAGCATG CACCCGTACCCCACAAAGCTT CGCTTCCGGT chrII:45596-46752 + 23 6.83e-05 AAGATCGGTT ACGGTTCTAACAAGAAGACCA AGTTTTTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYWAMCMACTRVGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:689377-689854 1.1e-10 6_[-2]_73 chrXV:853740-854760 1.9e-10 31_[+2]_48 chrXII:214728-215071 1.9e-10 78_[+2]_1 chrIV:1150718-1151157 4.1e-10 26_[+2]_53 chrXV:353887-354313 5.2e-10 35_[+2]_44 chrXIV:104608-105042 5.2e-10 36_[-2]_43 chrX:59007-59374 5.2e-10 4_[+2]_75 chrVIII:115911-116378 5.2e-10 57_[+2]_22 chrIX:174885-175229 5.2e-10 30_[-2]_49 chrXVI:856720-857141 6.6e-10 28_[-2]_51 chrXII:656837-657213 6.6e-10 3_[+2]_76 chrXI:219746-220113 6.6e-10 22_[-2]_57 chrVII:774122-774686 6.6e-10 1_[-2]_78 chrXIII:258985-259385 1.3e-09 76_[+2]_3 chrXII:167780-168263 1.3e-09 26_[+2]_53 chrIV:1305414-1305878 1.3e-09 40_[-2]_39 chrXIV:602080-602542 2.4e-09 57_[-2]_22 chrXII:734593-734988 2.4e-09 68_[-2]_11 chrIX:183298-183693 2.4e-09 40_[+2]_39 chrXII:592326-592799 8.6e-09 79_[+2] chrX:617714-618163 8.6e-09 37_[-2]_42 chrVII:115325-115731 8.6e-09 16_[-2]_63 chrIV:359344-359799 8.6e-09 62_[-2]_17 chrXII:605143-605613 1e-08 76_[+2]_3 chrXVI:622035-623137 1.9e-08 67_[+2]_12 chrXVI:560050-560486 1.9e-08 43_[+2]_36 chrXIV:374640-375100 1.9e-08 55_[-2]_24 chrVIII:358294-358751 1.9e-08 69_[+2]_10 chrVIII:237699-238126 1.9e-08 49_[+2]_30 chrVI:157842-158217 1.9e-08 [+2]_79 chrII:36235-36617 1.9e-08 28_[-2]_51 chrXV:340119-340584 3.5e-08 42_[+2]_37 chrXI:490767-491272 3.5e-08 5_[-2]_74 chrX:233642-234207 3.5e-08 71_[-2]_8 chrV:492195-492567 3.5e-08 65_[+2]_14 chrXVI:581852-582378 4.7e-08 3_[-2]_76 chrX:414759-415270 4.7e-08 8_[-2]_71 chrV:435603-436010 4.7e-08 40_[+2]_39 chrIX:300023-300488 4.7e-08 67_[+2]_12 chrIV:1201523-1202021 4.7e-08 34_[-2]_45 chrIII:151126-151524 4.7e-08 53_[+2]_26 chrXV:228118-228558 5.4e-08 49_[-2]_30 chrXII:962828-963275 5.4e-08 26_[+2]_53 chrXI:84008-84469 5.4e-08 26_[-2]_53 chrXI:74417-74809 5.4e-08 67_[-2]_12 chrX:424261-424716 5.4e-08 49_[+2]_30 chrIII:127486-127915 5.4e-08 72_[-2]_7 chrXIII:572658-573145 3.7e-07 76_[+2]_3 chrX:390869-391358 3.7e-07 24_[+2]_55 chrXI:307928-308439 5.7e-07 56_[+2]_23 chrX:378212-378582 5.7e-07 19_[-2]_60 chrVII:823335-823731 5.7e-07 5_[-2]_74 chrV:469271-469675 5.7e-07 40_[-2]_39 chrV:438519-438943 5.7e-07 25_[-2]_54 chrXIV:442758-443272 6.9e-07 47_[-2]_32 chrXII:628087-628692 6.9e-07 50_[-2]_29 chrVII:205304-205783 6.9e-07 34_[-2]_45 chrXVI:775651-776047 1.6e-06 9_[+2]_70 chrXVI:435655-436183 1.6e-06 67_[+2]_12 chrX:542727-543271 1.6e-06 67_[+2]_12 chrX:354007-354489 1.6e-06 52_[-2]_27 chrVI:210316-211142 1.6e-06 [+2]_79 chrVI:167188-167650 1.6e-06 74_[-2]_5 chrII:642858-643257 1.6e-06 43_[+2]_36 chrXVI:744051-744549 1.9e-06 40_[-2]_39 chrVIII:466818-467260 1.9e-06 7_[-2]_72 chrVII:1004034-1004416 1.9e-06 47_[-2]_32 chrVII:661536-661972 1.9e-06 51_[-2]_28 chrXIII:808092-808535 2.5e-06 26_[+2]_53 chrVIII:134086-134630 2.5e-06 19_[-2]_60 chrV:130843-131353 2.5e-06 77_[+2]_2 chrIV:802540-802993 2.5e-06 58_[+2]_21 chrIV:520745-521176 2.5e-06 68_[-2]_11 chrIII:168089-168550 2.5e-06 75_[+2]_4 chrII:350633-351072 2.5e-06 31_[-2]_48 chrX:396571-397004 2.7e-06 31_[+2]_48 chrVI:162034-162390 2.7e-06 72_[-2]_7 chrIV:83346-83832 2.7e-06 15_[-2]_64 chrXVI:338748-339133 3.2e-06 1_[+2]_78 chrXIII:195928-196307 3.2e-06 75_[+2]_4 chrX:517649-518087 3.2e-06 38_[+2]_41 chrVI:101015-101754 3.2e-06 48_[-2]_31 chrIII:149723-150195 3.2e-06 17_[-2]_62 chrI:138980-139384 3.2e-06 26_[-2]_53 chrXV:110851-111204 3.4e-06 28_[+2]_51 chrVII:779414-779920 3.4e-06 5_[-2]_74 chrIV:411235-411660 5.4e-06 59_[+2]_20 chrV:78052-79464 5.9e-06 12_[-2]_67 chrX:415722-416242 6.8e-06 76_[+2]_3 chrVII:878529-879047 6.8e-06 49_[+2]_30 chrVII:287153-287653 6.8e-06 74_[+2]_5 chrXIV:6615-7006 7.3e-06 12_[+2]_67 chrIII:316225-316597 7.3e-06 59_[-2]_20 chrXVI:188611-188931 1.1e-05 21_[-2]_58 chrXI:1-187 1.2e-05 10_[+2]_69 chrIII:220501-223247 1.3e-05 61_[+2]_18 chrXV:274048-274972 2e-05 44_[-2]_35 chrIV:835750-837957 3e-05 74_[-2]_5 chrV:69125-69294 3.6e-05 11_[-2]_68 chrII:45596-46752 6.8e-05 22_[+2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYWAMCMACTRVGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DDSSCBYWAMCMACTRVGCCA width=21 seqs=100 chrXVI:689377-689854 ( 7) GTCGCCTTAACCACTCGGCCA 1 chrXV:853740-854760 ( 32) AGCGCGCTACCAACTGCGCCA 1 chrXII:214728-215071 ( 79) AGCGCGCTACCAACTGCGCCA 1 chrIV:1150718-1151157 ( 27) ATCGCCTTAACCACTCGGCCA 1 chrXV:353887-354313 ( 36) GGCGCCTTACCAACTTGGCCA 1 chrXIV:104608-105042 ( 37) GGCGCCTTACCAACTTGGCCA 1 chrX:59007-59374 ( 5) GGCGCCTTACCAACTTGGCCA 1 chrVIII:115911-116378 ( 58) GGCGCCTTACCAACTTGGCCA 1 chrIX:174885-175229 ( 31) GGCGCCTTACCAACTTGGCCA 1 chrXVI:856720-857141 ( 29) AGCGCGCTACCGACTACGCCA 1 chrXII:656837-657213 ( 4) AGCGCGCTACCGACTACGCCA 1 chrXI:219746-220113 ( 23) AGCGCGCTACCGACTACGCCA 1 chrVII:774122-774686 ( 2) AGCGCGCTACCGACTACGCCA 1 chrXIII:258985-259385 ( 77) TTCGCCTTAACCACTCGGCCA 1 chrXII:167780-168263 ( 27) TTCGCCTTAACCACTCGGCCA 1 chrIV:1305414-1305878 ( 41) TTCGCCTTAACCACTCGGCCA 1 chrXIV:602080-602542 ( 58) GTGCCTTAACCAACTGGGCCA 1 chrXII:734593-734988 ( 69) GTGCCTTAACCAACTGGGCCA 1 chrIX:183298-183693 ( 41) GTGCCTTAACCAACTGGGCCA 1 chrXII:592326-592799 ( 80) ACGCCTTAAACCACTCGGCCA 1 chrX:617714-618163 ( 38) ACGCCTTAAACCACTCGGCCA 1 chrVII:115325-115731 ( 17) AACGCTCTACCAACTGAGCTA 1 chrIV:359344-359799 ( 63) AACGCTCTACCAACTGAGCTA 1 chrXII:605143-605613 ( 77) GAAGCTCTAACCACTGAGCTA 1 chrXVI:622035-623137 ( 68) GGCGCTCTCCCAACTGAGCTA 1 chrXVI:560050-560486 ( 44) GGCGCTCTCCCAACTGAGCTA 1 chrXIV:374640-375100 ( 56) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:358294-358751 ( 70) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:237699-238126 ( 50) GGCGCTCTCCCAACTGAGCTA 1 chrVI:157842-158217 ( 1) GGCGCTCTCCCAACTGAGCTA 1 chrII:36235-36617 ( 29) GGCGCTCTCCCAACTGAGCTA 1 chrXV:340119-340584 ( 43) GACGCCGTGACCATTGGGCCA 1 chrXI:490767-491272 ( 6) GACGCCGTGACCATTGGGCCA 1 chrX:233642-234207 ( 72) GACGCCGTGACCATTGGGCCA 1 chrV:492195-492567 ( 66) GACGCCGTGACCATTGGGCCA 1 chrXVI:581852-582378 ( 4) TACGCGCTACCGATTGCGCCA 1 chrX:414759-415270 ( 9) TACGCGCTACCGATTGCGCCA 1 chrV:435603-436010 ( 41) TACGCGCTACCGATTGCGCCA 1 chrIX:300023-300488 ( 68) TACGCGCTACCGATTGCGCCA 1 chrIV:1201523-1202021 ( 35) TACGCGCTACCGATTGCGCCA 1 chrIII:151126-151524 ( 54) TACGCGCTACCGATTGCGCCA 1 chrXV:228118-228558 ( 50) ACGCCTTAACCAACTTGGCCA 1 chrXII:962828-963275 ( 27) CCGCCTTAGACCACTCGGCCA 1 chrXI:84008-84469 ( 27) CCGCCTTAGACCACTCGGCCA 1 chrXI:74417-74809 ( 68) ACGCCTTAACCAACTTGGCCA 1 chrX:424261-424716 ( 50) CCGCCTTAGACCACTCGGCCA 1 chrIII:127486-127915 ( 73) ACGCCTTAACCAACTTGGCCA 1 chrXIII:572658-573145 ( 77) GACGCTCTTCCTACTGAGCTA 1 chrX:390869-391358 ( 25) GACGCTCTTCCTACTGAGCTA 1 chrXI:307928-308439 ( 57) ATGCCATAACCGACTAGACCA 1 chrX:378212-378582 ( 20) ATGCCATAACCGACTAGACCA 1 chrVII:823335-823731 ( 6) ATGCCATAACCGACTAGACCA 1 chrV:469271-469675 ( 41) ATGCCATAACCGACTAGACCA 1 chrV:438519-438943 ( 26) ATGCCATAACCGACTAGACCA 1 chrXIV:442758-443272 ( 48) GCGCCTTAGACCGCTCGGCCA 1 chrXII:628087-628692 ( 51) GCGCCTTAGACCGCTCGGCCA 1 chrVII:205304-205783 ( 35) GCGCCTTAGACCGCTCGGCCA 1 chrXVI:775651-776047 ( 10) TGCTGCGCTACCACTGCGCCA 1 chrXVI:435655-436183 ( 68) TGCTGCGCTACCACTGCGCCA 1 chrX:542727-543271 ( 68) CGCCTTAAACCAACTTGGCTA 1 chrX:354007-354489 ( 53) CGCCTTAAACCAACTTGGCTA 1 chrVI:210316-211142 ( 1) CGCCTTAAACCAACTTGGCTA 1 chrVI:167188-167650 ( 75) CGCCTTAAACCAACTTGGCTA 1 chrII:642858-643257 ( 44) TGCTGCGCTACCACTGCGCCA 1 chrXVI:744051-744549 ( 41) CAACGCTCTACCACTAAGCTA 1 chrVIII:466818-467260 ( 8) CAACGCTCTACCACTAAGCTA 1 chrVII:1004034-1004416 ( 48) CAACGCTCTACCACTAAGCTA 1 chrVII:661536-661972 ( 52) CAACGCTCTACCACTAAGCTA 1 chrXIII:808092-808535 ( 27) AAAGTGATAACCACTACACTA 1 chrVIII:134086-134630 ( 20) AAAGTGATAACCACTACACTA 1 chrV:130843-131353 ( 78) AAAGTGATAACCACTACACTA 1 chrIV:802540-802993 ( 59) AAAGTGATAACCACTACACTA 1 chrIV:520745-521176 ( 69) AAAGTGATAACCACTACACTA 1 chrIII:168089-168550 ( 76) AAAGTGATAACCACTACACTA 1 chrII:350633-351072 ( 32) AAAGTGATAACCACTACACTA 1 chrX:396571-397004 ( 32) TTGGATTTTACCACTAAACCA 1 chrVI:162034-162390 ( 73) TTGGATTTTACCACTAAACCA 1 chrIV:83346-83832 ( 16) TTGGATTTTACCACTAAACCA 1 chrXVI:338748-339133 ( 2) CTGCGCGCTTCCACTGCGCCA 1 chrXIII:195928-196307 ( 76) GAGAATCATACCACTAGACCA 1 chrX:517649-518087 ( 39) CTGCGCGCTTCCACTGCGCCA 1 chrVI:101015-101754 ( 49) GAGAATCATACCACTAGACCA 1 chrIII:149723-150195 ( 18) CTGCGCGCTTCCACTGCGCCA 1 chrI:138980-139384 ( 27) GAGAATCATACCACTAGACCA 1 chrXV:110851-111204 ( 29) GGGATGATAACCACTACACTA 1 chrVII:779414-779920 ( 6) GGGATGATAACCACTACACTA 1 chrIV:411235-411660 ( 60) AAGTCCCCACCCACACCACCA 1 chrV:78052-79464 ( 13) AAGGTTCTACCGACGACACCA 1 chrX:415722-416242 ( 77) GAAAGCTCTACCATTGAGCCA 1 chrVII:878529-879047 ( 50) GAAAGCTCTACCATTGAGCCA 1 chrVII:287153-287653 ( 75) GAAAGCTCTACCATTGAGCCA 1 chrXIV:6615-7006 ( 13) TTACCCTGCCCCACTCAACCA 1 chrIII:316225-316597 ( 60) TTACCCTGCCCCACTCAACCA 1 chrXVI:188611-188931 ( 22) AGACCGGAAACCTCTACACCA 1 chrXI:1-187 ( 11) CACACCACACCCACTACTCTA 1 chrIII:220501-223247 ( 62) CCGGCACAAACCACTTCACCT 1 chrXV:274048-274972 ( 45) GCCTCCCCTACCACTGAACAA 1 chrIV:835750-837957 ( 75) TTAGCAGCGACGACCGGGCCA 1 chrV:69125-69294 ( 12) CACCCGTACCCCACAAAGCTT 1 chrII:45596-46752 ( 23) ACGGTTCTAACAAGAAGACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYWAMCMACTRVGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46880 bayes= 7.69725 E= 8.7e-173 -2 -20 84 -76 24 -48 52 -47 -68 127 80 -1329 -176 80 141 -261 -234 176 -59 -102 -212 71 24 32 -112 71 -70 46 -7 -20 -329 77 90 -96 -83 -47 66 133 -1329 -334 -1329 236 -1329 -1329 -17 147 -20 -393 166 -1329 -270 -493 -1329 214 -428 -123 -334 -428 -428 164 11 -29 96 -123 -23 71 111 -1329 -12 -1329 186 -493 -1329 236 -1329 -1329 -493 180 -1329 2 168 -1329 -1329 -393 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYWAMCMACTRVGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 100 E= 8.7e-173 0.300000 0.170000 0.350000 0.180000 0.360000 0.140000 0.280000 0.220000 0.190000 0.470000 0.340000 0.000000 0.090000 0.340000 0.520000 0.050000 0.060000 0.660000 0.130000 0.150000 0.070000 0.320000 0.230000 0.380000 0.140000 0.320000 0.120000 0.420000 0.290000 0.170000 0.020000 0.520000 0.570000 0.100000 0.110000 0.220000 0.480000 0.490000 0.000000 0.030000 0.000000 1.000000 0.000000 0.000000 0.270000 0.540000 0.170000 0.020000 0.960000 0.000000 0.030000 0.010000 0.000000 0.860000 0.010000 0.130000 0.030000 0.010000 0.010000 0.950000 0.330000 0.160000 0.380000 0.130000 0.260000 0.320000 0.420000 0.000000 0.280000 0.000000 0.710000 0.010000 0.000000 1.000000 0.000000 0.000000 0.010000 0.680000 0.000000 0.310000 0.980000 0.000000 0.000000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYWAMCMACTRVGCCA MEME-2 regular expression -------------------------------------------------------------------------------- [GA][AGT][CG][GC]C[TCG][TC][TA][AT][CA]C[CA]ACT[GA][GCA][GA]C[CT]A -------------------------------------------------------------------------------- Time 630.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 width = 30 sites = 8 llr = 330 E-value = 3.4e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::aa:::::a::a:a::a:::::::a::: pos.-specific C :::::a::a:::a:a::a:a:8:3:a:aa: probability G :a::::aa::::::::::::a::::::::a matrix T a:a::::::a:a::::a::::3a8a::::: bits 2.4 * **** * * * ** * *** 2.1 * **** * * * ** * *** 1.9 * **** * * * ** * *** 1.6 ********************* * ****** Relative 1.4 *********************** ****** Entropy 1.2 ****************************** (59.4 bits) 0.9 ****************************** 0.7 ****************************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel TGTAACGGCTATCACATCACGCTTTCACCG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:209973-210476 - 50 4.12e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrXIII:290592-291129 + 1 4.12e-19 . TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrX:115717-116232 - 47 4.12e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrIX:370226-370632 + 48 4.12e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrIII:82381-82662 - 23 4.12e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrII:644969-645412 + 37 4.12e-19 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrIX:197362-197801 + 71 1.73e-18 TCCGATGTAG TGTAACGGCTATCACATCACGTTCTCACCG chrIV:1016982-1017478 - 59 1.73e-18 TCCGATGTAG TGTAACGGCTATCACATCACGTTCTCACCG TGGAGACCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:209973-210476 4.1e-19 49_[-3]_21 chrXIII:290592-291129 4.1e-19 [+3]_70 chrX:115717-116232 4.1e-19 46_[-3]_24 chrIX:370226-370632 4.1e-19 47_[+3]_23 chrIII:82381-82662 4.1e-19 22_[-3]_48 chrII:644969-645412 4.1e-19 36_[+3]_34 chrIX:197362-197801 1.7e-18 70_[+3] chrIV:1016982-1017478 1.7e-18 58_[-3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTAACGGCTATCACATCACGCTTTCACCG width=30 seqs=8 chrXVI:209973-210476 ( 50) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrXIII:290592-291129 ( 1) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrX:115717-116232 ( 47) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrIX:370226-370632 ( 48) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrIII:82381-82662 ( 23) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrII:644969-645412 ( 37) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrIX:197362-197801 ( 71) TGTAACGGCTATCACATCACGTTCTCACCG 1 chrIV:1016982-1017478 ( 59) TGTAACGGCTATCACATCACGTTCTCACCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41606 bayes= 12.3442 E= 3.4e-055 -965 -965 -965 171 -965 -965 236 -965 -965 -965 -965 171 171 -965 -965 -965 171 -965 -965 -965 -965 236 -965 -965 -965 -965 236 -965 -965 -965 236 -965 -965 236 -965 -965 -965 -965 -965 171 171 -965 -965 -965 -965 -965 -965 171 -965 236 -965 -965 171 -965 -965 -965 -965 236 -965 -965 171 -965 -965 -965 -965 -965 -965 171 -965 236 -965 -965 171 -965 -965 -965 -965 236 -965 -965 -965 -965 236 -965 -965 194 -965 -29 -965 -965 -965 171 -965 36 -965 130 -965 -965 -965 171 -965 236 -965 -965 171 -965 -965 -965 -965 236 -965 -965 -965 236 -965 -965 -965 -965 236 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 8 E= 3.4e-055 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAACGGCTATCACATCACGCTTTCACCG MEME-3 regular expression -------------------------------------------------------------------------------- TGTAACGGCTATCACATCACG[CT]T[TC]TCACCG -------------------------------------------------------------------------------- Time 917.31 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:46182-46381 4.09e-02 33_[+1(9.62e-05)]_37 chrI:71780-73268 8.97e-01 100 chrI:81866-82409 4.15e-01 100 chrI:138980-139384 1.39e-03 26_[-2(3.16e-06)]_53 chrI:166168-166557 7.70e-01 100 chrI:181124-181543 4.42e-01 100 chrI:182236-183205 1.77e-01 100 chrII:9451-9891 7.84e-05 16_[+1(8.30e-08)]_54 chrII:36235-36617 1.28e-04 28_[-2(1.95e-08)]_51 chrII:44802-45357 3.54e-01 100 chrII:45596-46752 3.80e-02 22_[+2(6.83e-05)]_57 chrII:59825-61402 2.64e-01 100 chrII:87953-88572 6.99e-01 100 chrII:89665-90020 6.36e-01 100 chrII:139002-139991 2.73e-01 100 chrII:144003-144279 4.75e-01 100 chrII:144439-145621 4.43e-02 28_[+1(4.27e-05)]_42 chrII:165073-165438 2.39e-01 100 chrII:167610-169572 2.19e-01 100 chrII:181343-181851 3.58e-01 100 chrII:197290-197856 6.10e-08 15_[+1(2.01e-11)]_55 chrII:226968-227354 1.09e-04 16_[+1(1.68e-08)]_54 chrII:266190-266710 1.79e-05 21_[+1(2.67e-09)]_49 chrII:326464-327070 3.73e-01 100 chrII:332293-333056 7.78e-02 100 chrII:347413-347977 7.84e-05 12_[+1(8.30e-08)]_58 chrII:350633-351072 2.39e-12 31_[-2(2.47e-06)]_15_[+1(1.62e-10)]_\ 3 chrII:405683-406291 5.35e-08 29_[-2(3.81e-05)]_15_[+1(7.94e-10)]_\ 5 chrII:412721-414866 5.37e-01 100 chrII:415502-416216 5.53e-01 100 chrII:477031-477730 2.69e-01 100 chrII:556489-557933 8.12e-01 100 chrII:592278-593770 6.52e-01 100 chrII:604048-607110 7.16e-01 100 chrII:642858-643257 1.64e-03 43_[+2(1.60e-06)]_36 chrII:644969-645412 2.88e-22 36_[+3(4.12e-19)]_3_[+1(4.56e-11)]_\ 1 chrII:680367-682461 2.12e-01 100 chrIII:58-606 1.09e-01 100 chrIII:30582-30789 1.72e-01 100 chrIII:57357-58530 9.29e-02 100 chrIII:82381-82662 1.89e-14 22_[-3(4.12e-19)]_48 chrIII:90849-91166 5.78e-01 100 chrIII:107199-107827 8.84e-01 100 chrIII:123159-123822 7.95e-01 100 chrIII:127486-127915 6.03e-04 72_[-2(5.39e-08)]_7 chrIII:142420-142954 1.06e-09 62_[-1(3.40e-14)]_8 chrIII:149723-150195 2.02e-04 17_[-2(3.16e-06)]_15_[+1(3.76e-05)]_\ 17 chrIII:151126-151524 3.45e-11 7_[-1(8.72e-11)]_16_[+2(4.69e-08)]_\ 26 chrIII:163466-163884 3.67e-01 100 chrIII:168089-168550 8.19e-13 30_[-1(5.20e-11)]_15_[+2(2.47e-06)]_\ 4 chrIII:177064-178143 4.95e-02 100 chrIII:178322-178748 9.43e-01 100 chrIII:220501-223247 9.74e-03 61_[+2(1.27e-05)]_18 chrIII:227757-228418 6.62e-01 100 chrIII:295297-295902 5.83e-01 100 chrIII:315040-315430 9.84e-01 100 chrIII:315607-316051 9.82e-01 100 chrIII:316225-316597 2.04e-02 59_[-2(7.31e-06)]_20 chrIV:8-236 2.22e-01 100 chrIV:45189-45920 1.17e-01 100 chrIV:83346-83832 1.97e-12 15_[-2(2.68e-06)]_14_[+1(1.41e-13)]_\ 20 chrIV:117162-117954 1.53e-01 100 chrIV:129761-131116 6.00e-01 100 chrIV:216569-217792 8.41e-01 100 chrIV:221728-222359 4.51e-01 100 chrIV:229539-230728 9.64e-01 100 chrIV:306679-309383 8.35e-01 100 chrIV:321402-321966 5.35e-01 100 chrIV:322185-323543 1.97e-01 100 chrIV:331067-332393 3.16e-01 100 chrIV:340471-341661 5.03e-01 100 chrIV:355607-356915 9.89e-01 100 chrIV:357949-358477 9.30e-01 100 chrIV:359344-359799 7.20e-05 62_[-2(8.63e-09)]_17 chrIV:410169-410813 8.18e-02 100 chrIV:411235-411660 1.90e-02 59_[+2(5.45e-06)]_20 chrIV:433548-434882 6.41e-01 100 chrIV:437556-438128 1.13e-04 32_[+1(1.68e-08)]_38 chrIV:465286-465607 5.90e-01 100 chrIV:488447-489139 3.95e-07 52_[-1(8.72e-11)]_18 chrIV:490426-492701 1.98e-01 100 chrIV:519655-519963 3.14e-05 38_[+1(4.82e-08)]_32 chrIV:520745-521176 1.43e-03 68_[-2(2.47e-06)]_11 chrIV:538842-539385 2.22e-02 48_[+1(1.42e-05)]_22 chrIV:555793-556379 7.06e-01 100 chrIV:568706-569341 2.60e-06 33_[+1(7.94e-10)]_37 chrIV:578811-580696 4.22e-01 100 chrIV:600784-602245 7.43e-02 100 chrIV:619727-620193 3.56e-05 57_[-1(7.97e-09)]_13 chrIV:644887-645376 4.10e-07 70_[-1(5.20e-11)] chrIV:656452-657172 2.27e-01 100 chrIV:667701-668254 7.84e-01 100 chrIV:757506-758281 2.58e-01 100 chrIV:802540-802993 4.64e-12 13_[-1(3.28e-10)]_15_[+2(2.47e-06)]_\ 21 chrIV:835750-837957 5.23e-02 74_[-2(3.03e-05)]_5 chrIV:884257-884656 9.18e-06 58_[+1(1.09e-09)]_12 chrIV:915397-916210 2.24e-02 100 chrIV:946135-946781 7.81e-01 100 chrIV:980652-981162 9.96e-01 100 chrIV:992717-993580 9.58e-01 100 chrIV:1013455-1013951 9.92e-01 100 chrIV:1016982-1017478 4.67e-22 25_[-1(1.13e-11)]_3_[-3(1.73e-18)]_\ 12 chrIV:1061564-1062154 9.89e-01 100 chrIV:1075164-1075757 4.56e-08 60_[-1(2.85e-12)]_10 chrIV:1095135-1095659 3.15e-05 21_[-1(7.31e-09)]_49 chrIV:1150718-1151157 2.24e-06 26_[+2(4.09e-10)]_53 chrIV:1175740-1176079 2.95e-06 13_[+1(2.92e-10)]_57 chrIV:1201523-1202021 1.81e-04 34_[-2(4.69e-08)]_45 chrIV:1236533-1237972 9.56e-01 100 chrIV:1256748-1257275 1.15e-09 45_[-1(3.40e-14)]_25 chrIV:1300460-1300654 1.04e-01 100 chrIV:1300864-1301341 8.18e-01 100 chrIV:1305414-1305878 1.36e-05 40_[-2(1.28e-09)]_39 chrIV:1351542-1353073 7.94e-01 100 chrIV:1354262-1354455 5.58e-01 100 chrIV:1354668-1355552 4.31e-01 100 chrIV:1355725-1356030 9.65e-01 100 chrIV:1359424-1360846 2.48e-01 100 chrIV:1401219-1402540 9.41e-01 100 chrIV:1450215-1450459 3.36e-02 100 chrIV:1450731-1451256 2.29e-01 100 chrIV:1461492-1461851 1.25e-01 100 chrIV:1466645-1468379 3.10e-01 100 chrIV:1489361-1489887 6.42e-01 100 chrIX:25061-25300 3.04e-03 68_[-3(1.53e-05)]_2 chrIX:68246-69537 9.87e-01 100 chrIX:98516-100076 5.89e-01 100 chrIX:174885-175229 2.15e-11 30_[-2(5.19e-10)]_16_[+1(5.12e-09)]_\ 3 chrIX:183298-183693 3.06e-05 40_[+2(2.38e-09)]_39 chrIX:197362-197801 3.61e-14 70_[+3(1.73e-18)] chrIX:210654-211031 1.00e+00 100 chrIX:211215-211696 8.09e-01 100 chrIX:248490-248999 1.82e-01 100 chrIX:254206-254551 3.47e-01 100 chrIX:255140-255865 3.67e-01 100 chrIX:256024-257094 5.36e-01 100 chrIX:257358-258263 5.10e-01 100 chrIX:300023-300488 6.80e-11 21_[-1(2.06e-10)]_16_[+2(4.69e-08)]_\ 12 chrIX:316131-316622 6.36e-01 100 chrIX:324147-324389 6.17e-01 100 chrIX:325733-326312 8.62e-01 100 chrIX:336040-336636 3.96e-07 59_[-1(7.94e-10)]_11 chrIX:370226-370632 9.86e-15 47_[+3(4.12e-19)]_23 chrIX:391071-392145 5.51e-01 100 chrV:53511-53949 4.67e-01 100 chrV:61073-62144 1.47e-01 100 chrV:67168-68953 5.46e-01 100 chrV:69125-69294 2.10e-02 11_[-2(3.60e-05)]_68 chrV:78052-79464 1.28e-02 12_[-2(5.87e-06)]_67 chrV:85105-87433 9.39e-01 100 chrV:99858-100313 2.39e-01 100 chrV:117449-118292 7.96e-01 100 chrV:130843-131353 5.16e-12 32_[-1(3.67e-10)]_15_[+2(2.47e-06)]_\ 2 chrV:135232-136060 3.17e-01 100 chrV:138463-139948 1.72e-01 100 chrV:140173-140913 9.40e-01 100 chrV:176913-177440 8.92e-08 15_[+1(4.56e-11)]_55 chrV:207352-207840 8.65e-01 100 chrV:235284-237039 3.28e-01 100 chrV:249785-250548 6.06e-02 100 chrV:270360-270664 3.80e-01 100 chrV:288165-288724 2.19e-04 47_[-1(4.82e-08)]_23 chrV:305817-307390 1.14e-01 100 chrV:311722-312294 4.16e-07 63_[-1(4.56e-11)]_7 chrV:321986-323939 5.07e-01 100 chrV:354713-355390 2.14e-01 100 chrV:362166-362481 5.42e-01 100 chrV:362662-363293 9.72e-01 100 chrV:396025-398184 8.45e-01 100 chrV:423071-423630 9.34e-01 100 chrV:431017-431921 9.43e-01 100 chrV:434384-434979 1.35e-01 100 chrV:435603-436010 1.66e-04 40_[+2(4.69e-08)]_39 chrV:438519-438943 1.38e-10 25_[-2(5.65e-07)]_17_[+1(9.89e-11)]_\ 7 chrV:441813-442679 2.57e-02 4_[+3(8.65e-06)]_66 chrV:443068-443365 6.10e-08 34_[-1(2.01e-11)]_36 chrV:469271-469675 4.51e-04 40_[-2(5.65e-07)]_39 chrV:487085-487576 8.92e-08 49_[-1(4.56e-11)]_21 chrV:492195-492567 3.76e-09 19_[-1(1.55e-08)]_16_[+2(3.54e-08)]_\ 14 chrV:550920-551597 1.72e-01 100 chrVI:63604-65548 4.92e-01 100 chrVI:82483-83836 5.92e-01 100 chrVI:95469-95923 5.26e-02 100 chrVI:101015-101754 1.39e-03 48_[-2(3.16e-06)]_31 chrVI:137180-137702 8.42e-01 100 chrVI:157842-158217 4.34e-05 [+2(1.95e-08)]_79 chrVI:162034-162390 6.13e-03 72_[-2(2.68e-06)]_7 chrVI:167188-167650 9.00e-03 74_[-2(1.60e-06)]_5 chrVI:180649-181273 1.57e-08 61_[-1(6.24e-13)]_9 chrVI:191109-191780 1.50e-01 100 chrVI:210316-211142 1.70e-03 [+2(1.60e-06)]_79 chrVI:220213-222472 6.52e-01 100 chrVI:223236-224157 5.15e-01 100 chrVI:226431-227245 2.46e-01 100 chrVII:272-1184 7.95e-01 100 chrVII:6692-6905 7.49e-01 100 chrVII:110350-110794 4.94e-01 100 chrVII:115325-115731 1.03e-05 16_[-2(8.63e-09)]_63 chrVII:121895-122831 9.03e-03 8_[+2(7.18e-05)]_71 chrVII:148936-149523 1.50e-01 100 chrVII:185448-185909 9.52e-01 100 chrVII:198115-199390 1.82e-01 100 chrVII:205304-205783 2.63e-03 34_[-2(6.91e-07)]_45 chrVII:254118-254738 8.47e-01 100 chrVII:255200-255745 5.38e-01 100 chrVII:277032-278700 1.17e-01 100 chrVII:287153-287653 5.74e-03 74_[+2(6.80e-06)]_5 chrVII:310403-312235 1.16e-01 63_[+3(5.85e-05)]_7 chrVII:312398-312701 8.28e-02 100 chrVII:319238-320146 5.71e-01 100 chrVII:328397-329193 6.00e-01 100 chrVII:345894-346636 1.37e-01 100 chrVII:364906-366673 9.93e-01 100 chrVII:370975-371514 4.44e-01 100 chrVII:398637-400140 4.62e-01 100 chrVII:401432-401621 7.97e-08 49_[-1(4.56e-11)]_21 chrVII:405457-405943 9.55e-01 100 chrVII:412003-412569 2.99e-08 56_[-1(9.89e-11)]_14 chrVII:422703-423403 1.63e-01 100 chrVII:437260-439874 1.85e-01 100 chrVII:440491-442695 3.78e-01 100 chrVII:479192-482688 5.86e-01 100 chrVII:517005-517900 4.76e-02 100 chrVII:531266-532477 9.03e-02 66_[+2(7.93e-05)]_13 chrVII:533847-535199 9.43e-01 100 chrVII:541714-542159 8.92e-08 6_[+1(4.56e-11)]_64 chrVII:544393-544862 2.57e-02 43_[+2(3.81e-05)]_36 chrVII:555075-556857 6.02e-01 100 chrVII:561296-561732 8.33e-01 100 chrVII:609331-609963 4.88e-01 100 chrVII:648802-649348 7.91e-01 100 chrVII:661536-661972 2.89e-04 51_[-2(1.91e-06)]_28 chrVII:700449-701235 9.86e-01 100 chrVII:706911-707193 9.85e-01 100 chrVII:712546-712750 2.87e-01 100 chrVII:726285-728640 4.74e-01 100 chrVII:730964-732284 6.02e-01 100 chrVII:736189-736815 9.87e-01 100 chrVII:738916-739593 8.23e-01 100 chrVII:774122-774686 3.79e-12 1_[-2(6.56e-10)]_16_[+1(6.40e-10)]_\ 32 chrVII:779414-779920 9.90e-13 8_[+3(1.30e-06)]_3_[+1(1.12e-10)]_\ 29 chrVII:788012-788763 2.21e-01 100 chrVII:794031-794571 9.66e-01 100 chrVII:823335-823731 5.93e-11 5_[-2(5.65e-07)]_17_[+1(3.99e-11)]_\ 27 chrVII:825446-826880 2.66e-01 100 chrVII:828383-828970 2.93e-01 100 chrVII:845398-846092 5.67e-01 100 chrVII:856737-857699 9.31e-01 100 chrVII:876185-878132 3.33e-01 100 chrVII:878529-879047 9.09e-03 49_[+2(6.80e-06)]_30 chrVII:882771-883799 4.86e-01 100 chrVII:930767-931627 9.56e-01 100 chrVII:960606-961137 3.42e-01 100 chrVII:1000363-1000565 1.49e-01 100 chrVII:1004034-1004416 2.89e-04 47_[-2(1.91e-06)]_32 chrVIII:34555-35137 1.93e-01 100 chrVIII:35294-36148 6.21e-01 100 chrVIII:62532-63296 7.83e-01 100 chrVIII:74766-75942 3.92e-01 100 chrVIII:85199-85382 2.07e-06 56_[-1(9.89e-11)]_14 chrVIII:103549-105257 3.17e-01 100 chrVIII:115911-116378 1.16e-11 11_[-1(2.67e-09)]_16_[+2(5.19e-10)]_\ 22 chrVIII:119707-121643 9.34e-02 100 chrVIII:125906-126324 7.99e-01 100 chrVIII:132832-133114 9.98e-01 100 chrVIII:134086-134630 8.19e-13 19_[-2(2.47e-06)]_15_[+1(5.20e-11)]_\ 15 chrVIII:145805-146460 3.00e-01 100 chrVIII:147865-148738 4.97e-01 100 chrVIII:148907-149427 9.97e-01 100 chrVIII:173408-176166 1.82e-01 100 chrVIII:237699-238126 1.93e-04 49_[+2(1.95e-08)]_30 chrVIII:296823-297242 4.53e-01 100 chrVIII:358294-358751 2.89e-09 4_[-1(1.97e-08)]_35_[+2(1.95e-08)]_\ 10 chrVIII:381473-382339 8.01e-01 100 chrVIII:382767-383369 5.72e-01 100 chrVIII:388639-389006 7.71e-01 100 chrVIII:451312-453130 5.85e-01 100 chrVIII:466818-467260 1.92e-09 7_[-2(1.91e-06)]_15_[+1(1.81e-09)]_\ 27 chrVIII:467487-467842 1.93e-01 100 chrVIII:475502-475915 3.20e-08 46_[-1(2.85e-12)]_24 chrVIII:505804-506218 8.73e-01 100 chrVIII:554364-554745 1.12e-01 28_[-2(7.18e-05)]_51 chrVIII:555733-556927 4.89e-01 100 chrVIII:562338-562595 7.35e-01 100 chrX:59007-59374 8.68e-06 4_[+2(5.19e-10)]_75 chrX:73045-76489 5.35e-01 100 chrX:89503-90444 9.65e-01 100 chrX:115717-116232 2.88e-22 13_[-1(4.56e-11)]_3_[-3(4.12e-19)]_\ 24 chrX:120343-121908 5.17e-01 100 chrX:139265-141115 7.62e-01 100 chrX:156551-157256 9.98e-01 100 chrX:157442-157868 4.50e-01 100 chrX:196719-197469 5.04e-01 100 chrX:204546-205098 2.58e-06 5_[+1(7.94e-10)]_65 chrX:227746-228604 6.43e-01 100 chrX:233642-234207 3.71e-04 71_[-2(3.54e-08)]_8 chrX:354007-354489 8.86e-03 52_[-2(1.60e-06)]_27 chrX:355176-355754 7.98e-07 1_[+1(1.55e-08)]_16_[-2(3.81e-05)]_\ 32 chrX:366869-367230 6.02e-01 100 chrX:374187-374819 7.98e-07 14_[+2(3.81e-05)]_16_[-1(1.55e-08)]_\ 19 chrX:378212-378582 1.38e-10 19_[-2(5.65e-07)]_17_[+1(9.89e-11)]_\ 13 chrX:390869-391358 4.80e-04 24_[+2(3.72e-07)]_55 chrX:391814-392112 3.67e-01 100 chrX:396571-397004 6.44e-03 31_[+2(2.68e-06)]_48 chrX:414759-415270 7.70e-11 8_[-2(4.69e-08)]_16_[+1(2.06e-10)]_\ 25 chrX:415722-416242 5.74e-03 76_[+2(6.80e-06)]_3 chrX:422617-423583 9.48e-01 100 chrX:424261-424716 3.13e-05 49_[+2(5.39e-08)]_30 chrX:517649-518087 6.34e-03 38_[+2(3.16e-06)]_41 chrX:523513-524467 1.55e-04 70_[-1(1.68e-08)] chrX:531552-532240 1.79e-08 23_[+1(6.24e-13)]_47 chrX:538006-538852 6.91e-01 100 chrX:540856-542010 1.00e+00 100 chrX:542727-543271 4.65e-07 5_[-1(1.29e-07)]_32_[+2(1.60e-06)]_\ 12 chrX:545429-545927 4.20e-01 100 chrX:607543-608175 1.71e-01 1_[-3(9.28e-05)]_69 chrX:617714-618163 1.11e-05 37_[-2(8.63e-09)]_42 chrX:651045-651616 9.98e-01 100 chrX:651906-653459 8.66e-01 100 chrX:663681-664371 3.57e-01 100 chrX:690598-690919 6.71e-01 100 chrX:703256-703654 4.91e-01 100 chrX:745061-745750 5.55e-01 100 chrXI:1-187 3.40e-03 10_[+2(1.19e-05)]_69 chrXI:780-1084 9.74e-01 100 chrXI:46714-47004 8.07e-01 100 chrXI:67798-68045 2.83e-01 100 chrXI:74417-74809 4.08e-04 67_[-2(5.39e-08)]_12 chrXI:84008-84469 3.21e-06 26_[-2(5.39e-08)]_53 chrXI:99765-99927 1.28e-01 100 chrXI:100630-105850 3.77e-01 100 chrXI:107598-110139 9.93e-01 100 chrXI:140803-141427 9.25e-01 100 chrXI:141721-142761 2.83e-01 100 chrXI:158201-158707 9.64e-01 100 chrXI:161927-162092 4.99e-01 100 chrXI:162241-162760 2.43e-05 35_[-1(4.27e-09)]_35 chrXI:163636-164322 9.78e-01 100 chrXI:202155-203277 2.37e-01 100 chrXI:219746-220113 3.06e-12 22_[-2(6.56e-10)]_16_[+1(6.40e-10)]_\ 11 chrXI:261157-261906 6.48e-02 100 chrXI:282832-284469 5.16e-01 100 chrXI:302710-303243 1.36e-05 68_[+1(1.43e-08)]_2 chrXI:307928-308439 1.38e-10 9_[-1(9.89e-11)]_17_[+2(5.65e-07)]_\ 23 chrXI:313179-314014 9.93e-01 100 chrXI:326404-327575 1.29e-01 25_[+2(7.55e-05)]_54 chrXI:364533-365153 3.38e-01 100 chrXI:379683-380687 8.90e-02 100 chrXI:382182-382448 1.97e-01 100 chrXI:431363-431669 4.22e-01 100 chrXI:458022-458990 9.79e-01 100 chrXI:490767-491272 2.03e-09 5_[-2(3.54e-08)]_16_[+1(7.97e-09)]_\ 28 chrXI:513013-513597 8.45e-01 100 chrXI:517783-518122 9.92e-01 100 chrXI:519331-521381 5.17e-01 100 chrXI:558466-559416 6.24e-01 100 chrXI:578541-579599 2.55e-05 11_[+1(2.20e-09)]_59 chrXI:617756-619274 9.81e-01 100 chrXI:666020-666177 5.49e-01 100 chrXI:666611-666803 4.20e-01 100 chrXII:47506-49240 1.77e-01 100 chrXII:92408-92926 1.26e-05 4_[+1(8.83e-10)]_66 chrXII:167780-168263 1.02e-05 26_[+2(1.28e-09)]_53 chrXII:198684-199726 8.12e-01 100 chrXII:199890-200191 3.37e-01 100 chrXII:201660-202839 2.20e-01 100 chrXII:214728-215071 2.97e-14 32_[-1(1.74e-11)]_16_[+2(1.90e-10)]_\ 1 chrXII:232166-234198 2.31e-01 100 chrXII:241650-242014 9.47e-01 100 chrXII:242202-243440 1.49e-01 100 chrXII:253755-254997 8.42e-01 100 chrXII:260963-263933 8.90e-01 100 chrXII:282592-283968 1.18e-01 100 chrXII:360801-361302 1.97e-01 100 chrXII:366015-366575 8.42e-01 100 chrXII:369675-370243 2.18e-01 100 chrXII:370654-370863 2.42e-01 100 chrXII:373992-374660 3.70e-01 100 chrXII:424206-424468 2.66e-01 100 chrXII:426936-427463 8.08e-06 25_[+1(7.94e-10)]_45 chrXII:440549-441308 3.65e-02 100 chrXII:448509-449052 3.07e-01 100 chrXII:459608-460694 1.79e-01 100 chrXII:498357-500069 2.41e-01 100 chrXII:514085-514695 5.73e-01 100 chrXII:515257-516882 5.82e-01 100 chrXII:521458-522430 2.41e-01 100 chrXII:592326-592799 1.04e-06 5_[-1(5.95e-05)]_44_[+2(8.63e-09)] chrXII:605143-605613 2.31e-05 76_[+2(1.02e-08)]_3 chrXII:628087-628692 2.19e-03 50_[-2(6.91e-07)]_29 chrXII:636799-639930 4.50e-01 100 chrXII:656837-657213 1.13e-05 3_[+2(6.56e-10)]_76 chrXII:673547-674680 9.65e-01 100 chrXII:687658-687929 3.47e-01 100 chrXII:713142-713642 9.97e-01 100 chrXII:731564-732356 9.74e-01 100 chrXII:734593-734988 2.00e-05 68_[-2(2.38e-09)]_11 chrXII:781024-781893 9.29e-01 100 chrXII:783903-784518 5.13e-01 100 chrXII:793770-795287 2.55e-01 100 chrXII:796257-797773 7.87e-01 100 chrXII:805798-806816 3.41e-01 100 chrXII:811333-815619 3.13e-02 100 chrXII:818503-820319 9.64e-01 100 chrXII:837682-839225 8.10e-02 100 chrXII:855798-857331 5.88e-01 100 chrXII:874551-875645 4.96e-01 100 chrXII:897497-899026 6.20e-01 100 chrXII:921717-923343 7.51e-01 100 chrXII:929875-931871 7.26e-01 100 chrXII:932092-932559 8.49e-01 100 chrXII:953326-953807 4.31e-01 100 chrXII:962828-963275 5.76e-05 26_[+2(5.39e-08)]_53 chrXII:975777-976193 5.43e-05 46_[-1(3.23e-09)]_24 chrXII:1012143-1013344 2.73e-01 100 chrXII:1018105-1019389 6.23e-01 100 chrXII:1028179-1028645 4.85e-01 100 chrXII:1051931-1052235 6.10e-08 36_[-1(2.01e-11)]_34 chrXIII:5441-5667 6.75e-01 100 chrXIII:24074-25758 8.91e-01 100 chrXIII:91367-92125 2.13e-01 100 chrXIII:131642-132084 1.53e-05 10_[-1(1.55e-08)]_60 chrXIII:145885-147219 4.04e-01 100 chrXIII:168164-169035 9.25e-01 100 chrXIII:195928-196307 1.39e-03 75_[+2(3.16e-06)]_4 chrXIII:224104-224309 9.88e-01 100 chrXIII:225142-226565 5.87e-01 100 chrXIII:253398-253561 1.89e-01 100 chrXIII:258985-259385 1.52e-10 21_[-1(1.68e-08)]_25_[+2(1.28e-09)]_\ 3 chrXIII:288095-289943 6.01e-01 100 chrXIII:290592-291129 2.88e-22 [+3(4.12e-19)]_3_[+1(4.56e-11)]_37 chrXIII:296688-298897 4.24e-01 100 chrXIII:302868-303553 6.12e-01 100 chrXIII:320947-321326 3.74e-06 59_[-1(2.92e-10)]_11 chrXIII:352082-353262 2.56e-01 100 chrXIII:362929-363313 3.29e-06 2_[+3(5.85e-05)]_3_[+1(2.89e-08)]_\ 35 chrXIII:372174-372663 1.34e-01 100 chrXIII:379048-379603 3.32e-05 26_[-1(2.49e-08)]_44 chrXIII:420326-420854 3.18e-07 46_[-1(3.99e-11)]_24 chrXIII:433493-433748 9.98e-01 100 chrXIII:463360-463885 5.86e-06 24_[+1(7.94e-10)]_46 chrXIII:480382-480834 1.52e-07 61_[-1(8.72e-11)]_9 chrXIII:498999-499214 8.63e-01 100 chrXIII:499365-501165 5.41e-01 100 chrXIII:504898-505220 8.20e-02 48_[-1(8.86e-05)]_22 chrXIII:550027-551798 7.75e-01 100 chrXIII:552056-553190 6.72e-01 100 chrXIII:557446-558381 9.74e-01 100 chrXIII:572658-573145 3.41e-09 30_[-1(1.48e-09)]_16_[+2(3.72e-07)]_\ 3 chrXIII:586295-586917 7.35e-01 100 chrXIII:650731-651903 5.51e-01 100 chrXIII:652065-652932 2.47e-01 100 chrXIII:732002-732521 4.71e-01 100 chrXIII:747363-748140 7.64e-02 100 chrXIII:753214-754230 9.53e-01 100 chrXIII:754400-755032 5.54e-01 100 chrXIII:768188-768453 9.54e-01 100 chrXIII:808092-808535 2.30e-06 26_[+2(2.47e-06)]_53 chrXIII:837745-838237 5.31e-04 46_[+1(1.29e-07)]_24 chrXIII:861223-861625 8.66e-01 100 chrXIII:872448-872888 3.74e-01 100 chrXIII:873677-874000 2.70e-01 100 chrXIV:6615-7006 1.63e-02 12_[+2(7.31e-06)]_67 chrXIV:62029-64506 7.70e-01 100 chrXIV:88999-89683 4.25e-01 100 chrXIV:96007-96470 7.49e-07 51_[-1(1.12e-10)]_19 chrXIV:102573-103094 6.66e-01 100 chrXIV:104608-105042 3.64e-06 36_[-2(5.19e-10)]_43 chrXIV:241389-242021 3.79e-01 100 chrXIV:289661-291777 1.73e-01 100 chrXIV:302637-303672 3.17e-01 100 chrXIV:330786-331670 7.88e-02 100 chrXIV:374640-375100 2.30e-04 55_[-2(1.95e-08)]_24 chrXIV:405687-406151 1.64e-01 100 chrXIV:415174-416297 1.00e+00 100 chrXIV:442758-443272 2.63e-03 47_[-2(6.91e-07)]_32 chrXIV:443472-444822 9.42e-01 100 chrXIV:493930-495032 4.35e-02 100 chrXIV:495195-496184 5.91e-01 100 chrXIV:499298-500699 7.73e-01 100 chrXIV:518823-519143 1.57e-02 100 chrXIV:525068-525275 8.95e-01 100 chrXIV:546524-547465 2.37e-01 100 chrXIV:560157-560916 8.49e-01 100 chrXIV:568051-568993 1.41e-01 100 chrXIV:569660-570096 6.10e-08 37_[-1(2.01e-11)]_33 chrXIV:577187-577577 6.54e-01 100 chrXIV:602080-602542 2.01e-05 57_[-2(2.38e-09)]_22 chrXIV:603081-604255 6.76e-01 100 chrXIV:631664-632106 8.34e-10 9_[-1(8.41e-12)]_15_[+2(5.28e-05)]_\ 25 chrXIV:632424-632902 1.43e-05 30_[+1(3.23e-09)]_40 chrXIV:657367-661350 3.33e-01 100 chrXIV:725571-725744 9.63e-01 100 chrXIV:725929-726581 9.82e-01 100 chrXIV:783698-784324 8.08e-01 100 chrXV:28757-30895 6.04e-01 100 chrXV:79736-80141 4.87e-01 100 chrXV:80339-81143 9.19e-01 100 chrXV:92759-94795 8.87e-01 100 chrXV:109590-110663 9.40e-01 100 chrXV:110851-111204 3.64e-06 16_[-3(1.30e-06)]_54 chrXV:113591-113885 9.34e-01 100 chrXV:159155-160142 1.35e-01 100 chrXV:160334-160702 8.60e-01 100 chrXV:161109-161774 6.20e-01 100 chrXV:168083-168333 5.37e-02 100 chrXV:216284-216783 3.34e-01 100 chrXV:226328-226893 3.72e-09 49_[-1(1.41e-13)]_21 chrXV:228118-228558 6.15e-04 49_[-2(5.39e-08)]_30 chrXV:252882-253645 3.28e-01 100 chrXV:253799-254672 3.21e-01 100 chrXV:274048-274972 2.45e-02 44_[-2(1.99e-05)]_35 chrXV:281988-282822 9.85e-01 100 chrXV:286869-288438 2.88e-01 100 chrXV:300900-301861 7.60e-01 100 chrXV:340119-340584 2.40e-04 42_[+2(3.54e-08)]_37 chrXV:353887-354313 4.63e-06 35_[+2(5.19e-10)]_44 chrXV:378282-379549 1.53e-01 100 chrXV:407614-408112 3.75e-01 100 chrXV:438469-439019 1.76e-05 15_[+1(2.20e-09)]_55 chrXV:444665-446239 7.78e-01 100 chrXV:464280-464802 1.59e-05 31_[+1(8.83e-10)]_39 chrXV:487426-487885 8.88e-01 100 chrXV:488320-488544 5.37e-01 100 chrXV:504945-505495 8.18e-01 100 chrXV:571763-572559 7.87e-01 100 chrXV:594304-594655 9.34e-01 100 chrXV:639141-639428 3.04e-01 100 chrXV:663518-664087 1.08e-06 58_[-1(3.99e-11)]_12 chrXV:678535-679195 7.51e-01 100 chrXV:710120-710496 9.80e-01 100 chrXV:758947-759476 8.40e-01 100 chrXV:779684-780987 5.95e-01 100 chrXV:841531-842853 7.30e-01 100 chrXV:853740-854760 2.52e-06 31_[+2(1.90e-10)]_48 chrXV:866434-867854 9.99e-01 100 chrXV:901436-901657 3.33e-01 100 chrXV:968146-968427 4.57e-01 100 chrXV:976377-976643 1.87e-06 4_[+1(6.40e-10)]_66 chrXV:978822-979150 8.45e-01 100 chrXV:979741-981062 9.76e-01 100 chrXV:1003956-1004392 7.71e-01 100 chrXV:1025719-1026038 5.11e-01 100 chrXV:1027921-1029308 7.41e-01 100 chrXVI:55837-56430 5.88e-01 100 chrXVI:75390-76799 3.38e-01 100 chrXVI:108865-114342 7.64e-02 100 chrXVI:123423-124554 9.59e-01 100 chrXVI:141213-142415 9.09e-01 100 chrXVI:188611-188931 8.08e-03 21_[-2(1.11e-05)]_58 chrXVI:209973-210476 2.88e-22 16_[-1(4.56e-11)]_3_[-3(4.12e-19)]_\ 21 chrXVI:280023-280237 4.02e-01 100 chrXVI:280574-281390 4.44e-01 100 chrXVI:281541-281923 3.44e-01 100 chrXVI:302660-304230 8.90e-01 100 chrXVI:338748-339133 3.03e-03 1_[+2(3.16e-06)]_78 chrXVI:378643-378988 2.12e-01 100 chrXVI:406196-407797 7.14e-01 100 chrXVI:408018-408248 4.85e-01 100 chrXVI:432667-434107 4.20e-01 100 chrXVI:435655-436183 1.41e-08 22_[-1(1.34e-09)]_15_[+2(1.60e-06)]_\ 12 chrXVI:451686-453030 9.02e-01 100 chrXVI:519693-520532 1.12e-01 100 chrXVI:529966-531269 4.34e-01 100 chrXVI:560050-560486 7.72e-05 43_[+2(1.95e-08)]_36 chrXVI:572174-572610 5.16e-01 100 chrXVI:577796-579755 5.69e-01 100 chrXVI:581852-582378 3.45e-11 3_[-2(4.69e-08)]_16_[+1(8.72e-11)]_\ 30 chrXVI:610495-611577 7.72e-01 100 chrXVI:622035-623137 2.89e-09 2_[-1(1.97e-08)]_35_[+2(1.95e-08)]_\ 12 chrXVI:642321-643334 4.73e-01 100 chrXVI:653886-655032 7.16e-01 100 chrXVI:689377-689854 7.65e-12 6_[-2(1.10e-10)]_25_[+1(4.82e-08)]_\ 18 chrXVI:692825-694903 2.19e-01 100 chrXVI:699609-700695 5.99e-01 100 chrXVI:731658-733137 8.19e-01 100 chrXVI:744051-744549 2.23e-04 40_[-2(1.91e-06)]_39 chrXVI:768368-769491 4.60e-01 100 chrXVI:775651-776047 9.40e-03 9_[+2(1.60e-06)]_70 chrXVI:794482-794836 9.97e-01 100 chrXVI:810572-811341 4.32e-01 100 chrXVI:819343-820360 6.00e-01 100 chrXVI:821636-822197 9.91e-01 100 chrXVI:856720-857141 1.36e-12 28_[-2(6.56e-10)]_16_[+1(2.92e-10)]_\ 5 chrXVI:860175-860700 6.22e-09 33_[+1(6.24e-13)]_37 chrXVI:879862-880574 1.00e+00 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************