******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAD1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71807-73250 1.0000 100 chrI:81854-82362 1.0000 100 chrI:138962-139371 1.0000 100 chrI:166170-166811 1.0000 100 chrI:181123-181486 1.0000 100 chrI:182176-183167 1.0000 100 chrII:9457-10173 1.0000 100 chrII:36241-36596 1.0000 100 chrII:44938-45361 1.0000 100 chrII:59825-61257 1.0000 100 chrII:87959-88556 1.0000 100 chrII:89662-90404 1.0000 100 chrII:159320-160175 1.0000 100 chrII:165055-165443 1.0000 100 chrII:167580-169721 1.0000 100 chrII:181310-181689 1.0000 100 chrII:181864-182083 1.0000 100 chrII:197192-197837 1.0000 100 chrII:226969-227374 1.0000 100 chrII:266174-266652 1.0000 100 chrII:326455-327169 1.0000 100 chrII:332303-332918 1.0000 100 chrII:347414-348011 1.0000 100 chrII:350602-351050 1.0000 100 chrII:393374-394755 1.0000 100 chrII:405699-406298 1.0000 100 chrII:415508-415961 1.0000 100 chrII:477032-477729 1.0000 100 chrII:504538-504852 1.0000 100 chrII:592686-593498 1.0000 100 chrII:604045-607135 1.0000 100 chrII:642842-643252 1.0000 100 chrII:644919-645419 1.0000 100 chrII:680385-682513 1.0000 100 chrIII:74-1060 1.0000 100 chrIII:75004-75711 1.0000 100 chrIII:78490-78886 1.0000 100 chrIII:81754-82651 1.0000 100 chrIII:90850-91161 1.0000 100 chrIII:123303-123818 1.0000 100 chrIII:127516-127891 1.0000 100 chrIII:142609-142969 1.0000 100 chrIII:149522-150195 1.0000 100 chrIII:150956-151517 1.0000 100 chrIII:161929-162376 1.0000 100 chrIII:163456-163903 1.0000 100 chrIII:168087-168550 1.0000 100 chrIII:177130-178779 1.0000 100 chrIII:227778-228508 1.0000 100 chrIII:260325-262358 1.0000 100 chrIII:262728-263153 1.0000 100 chrIII:295299-295979 1.0000 100 chrIII:315615-316040 1.0000 100 chrIV:15-242 1.0000 100 chrIV:83343-83818 1.0000 100 chrIV:117147-118210 1.0000 100 chrIV:129264-131017 1.0000 100 chrIV:216207-216868 1.0000 100 chrIV:217045-218082 1.0000 100 chrIV:218304-218700 1.0000 100 chrIV:221653-222970 1.0000 100 chrIV:229266-230524 1.0000 100 chrIV:306687-309398 1.0000 100 chrIV:321633-321955 1.0000 100 chrIV:340608-341923 1.0000 100 chrIV:357832-358522 1.0000 100 chrIV:359349-359784 1.0000 100 chrIV:392608-392854 1.0000 100 chrIV:409963-410768 1.0000 100 chrIV:411036-411674 1.0000 100 chrIV:433917-434938 1.0000 100 chrIV:437553-438156 1.0000 100 chrIV:465282-465605 1.0000 100 chrIV:488376-489080 1.0000 100 chrIV:489928-491260 1.0000 100 chrIV:491439-492662 1.0000 100 chrIV:519651-519904 1.0000 100 chrIV:520660-521457 1.0000 100 chrIV:538841-539249 1.0000 100 chrIV:568705-569342 1.0000 100 chrIV:578953-580681 1.0000 100 chrIV:600753-601930 1.0000 100 chrIV:619704-620190 1.0000 100 chrIV:644913-645367 1.0000 100 chrIV:667736-668255 1.0000 100 chrIV:727438-727945 1.0000 100 chrIV:757506-758219 1.0000 100 chrIV:802548-803004 1.0000 100 chrIV:835737-837924 1.0000 100 chrIV:884257-885645 1.0000 100 chrIV:946145-946635 1.0000 100 chrIV:980737-981157 1.0000 100 chrIV:992719-993429 1.0000 100 chrIV:1013694-1013977 1.0000 100 chrIV:1016952-1017521 1.0000 100 chrIV:1075124-1075761 1.0000 100 chrIV:1094711-1095659 1.0000 100 chrIV:1150714-1151169 1.0000 100 chrIV:1175742-1176113 1.0000 100 chrIV:1176376-1176687 1.0000 100 chrIV:1201507-1202114 1.0000 100 chrIV:1256698-1257294 1.0000 100 chrIV:1300840-1301344 1.0000 100 chrIV:1305420-1305912 1.0000 100 chrIV:1352149-1353067 1.0000 100 chrIV:1355720-1356009 1.0000 100 chrIV:1359200-1360815 1.0000 100 chrIV:1400934-1401953 1.0000 100 chrIV:1450646-1451646 1.0000 100 chrIV:1461349-1461850 1.0000 100 chrIV:1501605-1502774 1.0000 100 chrIX:68252-68503 1.0000 100 chrIX:99619-100051 1.0000 100 chrIX:174156-175580 1.0000 100 chrIX:182919-183710 1.0000 100 chrIX:197363-197743 1.0000 100 chrIX:210656-210925 1.0000 100 chrIX:248576-248992 1.0000 100 chrIX:254088-254580 1.0000 100 chrIX:257366-258081 1.0000 100 chrIX:299974-300473 1.0000 100 chrIX:315621-318399 1.0000 100 chrIX:323998-324385 1.0000 100 chrIX:325738-326348 1.0000 100 chrIX:336095-336627 1.0000 100 chrIX:370217-370612 1.0000 100 chrIX:391106-392507 1.0000 100 chrV:53512-54267 1.0000 100 chrV:61055-62161 1.0000 100 chrV:67127-69494 1.0000 100 chrV:85104-87093 1.0000 100 chrV:99855-100324 1.0000 100 chrV:117146-118298 1.0000 100 chrV:130814-131422 1.0000 100 chrV:135150-136187 1.0000 100 chrV:138453-139972 1.0000 100 chrV:140201-140923 1.0000 100 chrV:176856-177480 1.0000 100 chrV:207354-208190 1.0000 100 chrV:249786-250538 1.0000 100 chrV:270018-271106 1.0000 100 chrV:288140-288790 1.0000 100 chrV:305814-306932 1.0000 100 chrV:311690-312304 1.0000 100 chrV:354664-355530 1.0000 100 chrV:362158-362486 1.0000 100 chrV:396178-396595 1.0000 100 chrV:423066-424338 1.0000 100 chrV:431023-431940 1.0000 100 chrV:434385-434980 1.0000 100 chrV:435574-436032 1.0000 100 chrV:438309-438973 1.0000 100 chrV:441778-442693 1.0000 100 chrV:442994-443363 1.0000 100 chrV:469272-469749 1.0000 100 chrV:486921-487602 1.0000 100 chrV:492204-492576 1.0000 100 chrV:550933-551823 1.0000 100 chrVI:64130-65589 1.0000 100 chrVI:82580-83851 1.0000 100 chrVI:95468-95897 1.0000 100 chrVI:101039-101921 1.0000 100 chrVI:136972-137704 1.0000 100 chrVI:157844-158234 1.0000 100 chrVI:162041-162581 1.0000 100 chrVI:163059-163275 1.0000 100 chrVI:167213-167697 1.0000 100 chrVI:180628-181280 1.0000 100 chrVI:190906-191781 1.0000 100 chrVI:210446-211108 1.0000 100 chrVI:220808-222432 1.0000 100 chrVI:223223-224158 1.0000 100 chrVI:226673-227284 1.0000 100 chrVII:280-1756 1.0000 100 chrVII:110101-110786 1.0000 100 chrVII:115324-115706 1.0000 100 chrVII:121903-122977 1.0000 100 chrVII:148216-149558 1.0000 100 chrVII:185357-185917 1.0000 100 chrVII:205310-205758 1.0000 100 chrVII:254127-254696 1.0000 100 chrVII:255199-255367 1.0000 100 chrVII:277022-278696 1.0000 100 chrVII:287156-287731 1.0000 100 chrVII:310489-312948 1.0000 100 chrVII:319248-320158 1.0000 100 chrVII:328379-328945 1.0000 100 chrVII:345906-346706 1.0000 100 chrVII:364910-366616 1.0000 100 chrVII:370931-371580 1.0000 100 chrVII:401432-401619 1.0000 100 chrVII:405464-405864 1.0000 100 chrVII:411993-412591 1.0000 100 chrVII:422890-423484 1.0000 100 chrVII:438545-439882 1.0000 100 chrVII:440520-442632 1.0000 100 chrVII:479165-482692 1.0000 100 chrVII:531261-532007 1.0000 100 chrVII:533469-535200 1.0000 100 chrVII:541714-542171 1.0000 100 chrVII:544111-544860 1.0000 100 chrVII:555128-556688 1.0000 100 chrVII:561434-561729 1.0000 100 chrVII:648772-649388 1.0000 100 chrVII:661488-661983 1.0000 100 chrVII:700428-701239 1.0000 100 chrVII:706923-707186 1.0000 100 chrVII:726341-726781 1.0000 100 chrVII:730966-731432 1.0000 100 chrVII:736174-736651 1.0000 100 chrVII:738871-739630 1.0000 100 chrVII:774147-774750 1.0000 100 chrVII:779388-779947 1.0000 100 chrVII:787395-788750 1.0000 100 chrVII:794020-794566 1.0000 100 chrVII:823339-823713 1.0000 100 chrVII:828370-828979 1.0000 100 chrVII:845280-846001 1.0000 100 chrVII:856733-857948 1.0000 100 chrVII:876121-878090 1.0000 100 chrVII:878555-879036 1.0000 100 chrVII:882785-883820 1.0000 100 chrVII:930749-931646 1.0000 100 chrVII:972044-973919 1.0000 100 chrVII:1000343-1000606 1.0000 100 chrVII:1003959-1004416 1.0000 100 chrVIII:34381-36342 1.0000 100 chrVIII:62605-62898 1.0000 100 chrVIII:74776-75923 1.0000 100 chrVIII:103868-104731 1.0000 100 chrVIII:115841-116410 1.0000 100 chrVIII:125889-126320 1.0000 100 chrVIII:134112-134683 1.0000 100 chrVIII:144272-146458 1.0000 100 chrVIII:148923-149435 1.0000 100 chrVIII:174819-176051 1.0000 100 chrVIII:237756-238585 1.0000 100 chrVIII:296664-297249 1.0000 100 chrVIII:358285-358887 1.0000 100 chrVIII:381501-382359 1.0000 100 chrVIII:382699-383354 1.0000 100 chrVIII:388655-389005 1.0000 100 chrVIII:451291-453146 1.0000 100 chrVIII:466645-467298 1.0000 100 chrVIII:475479-475913 1.0000 100 chrVIII:487756-488042 1.0000 100 chrVIII:488330-488719 1.0000 100 chrVIII:505800-506228 1.0000 100 chrVIII:555764-556367 1.0000 100 chrVIII:556586-556914 1.0000 100 chrVIII:562317-562592 1.0000 100 chrX:58997-59396 1.0000 100 chrX:73374-76505 1.0000 100 chrX:89886-90460 1.0000 100 chrX:115759-116259 1.0000 100 chrX:139127-140308 1.0000 100 chrX:156574-157238 1.0000 100 chrX:157423-157889 1.0000 100 chrX:196533-197447 1.0000 100 chrX:204553-204990 1.0000 100 chrX:233654-234192 1.0000 100 chrX:236423-236978 1.0000 100 chrX:348847-349455 1.0000 100 chrX:353992-354487 1.0000 100 chrX:355186-355800 1.0000 100 chrX:374179-374874 1.0000 100 chrX:378219-378728 1.0000 100 chrX:390814-391345 1.0000 100 chrX:391801-392199 1.0000 100 chrX:396577-396956 1.0000 100 chrX:414747-415363 1.0000 100 chrX:415690-416243 1.0000 100 chrX:422736-423232 1.0000 100 chrX:424271-424716 1.0000 100 chrX:517655-518112 1.0000 100 chrX:523833-524392 1.0000 100 chrX:531598-532347 1.0000 100 chrX:538021-538814 1.0000 100 chrX:540726-543269 1.0000 100 chrX:545430-545734 1.0000 100 chrX:607899-608158 1.0000 100 chrX:617697-618155 1.0000 100 chrX:650913-651616 1.0000 100 chrX:690590-690864 1.0000 100 chrX:702950-703660 1.0000 100 chrX:745075-745748 1.0000 100 chrXI:4-180 1.0000 100 chrXI:782-1085 1.0000 100 chrXI:46714-47010 1.0000 100 chrXI:67795-68045 1.0000 100 chrXI:74387-75017 1.0000 100 chrXI:83987-84671 1.0000 100 chrXI:99730-99958 1.0000 100 chrXI:108665-110138 1.0000 100 chrXI:140702-141482 1.0000 100 chrXI:157542-158019 1.0000 100 chrXI:158190-159554 1.0000 100 chrXI:162238-162730 1.0000 100 chrXI:202509-203281 1.0000 100 chrXI:219623-220113 1.0000 100 chrXI:247400-248363 1.0000 100 chrXI:302682-303255 1.0000 100 chrXI:307932-308623 1.0000 100 chrXI:312406-314019 1.0000 100 chrXI:325922-327545 1.0000 100 chrXI:360394-362333 1.0000 100 chrXI:382176-382479 1.0000 100 chrXI:431363-431675 1.0000 100 chrXI:457985-459567 1.0000 100 chrXI:490726-491296 1.0000 100 chrXI:512897-513601 1.0000 100 chrXI:517793-518070 1.0000 100 chrXI:574900-576367 1.0000 100 chrXI:578724-579472 1.0000 100 chrXI:618765-619273 1.0000 100 chrXI:666621-666791 1.0000 100 chrXII:47689-49240 1.0000 100 chrXII:92346-92731 1.0000 100 chrXII:167780-168253 1.0000 100 chrXII:198658-199670 1.0000 100 chrXII:214673-215069 1.0000 100 chrXII:232091-234195 1.0000 100 chrXII:241631-242030 1.0000 100 chrXII:261083-263945 1.0000 100 chrXII:281967-284029 1.0000 100 chrXII:366035-366543 1.0000 100 chrXII:367753-368467 1.0000 100 chrXII:370637-370874 1.0000 100 chrXII:373799-374048 1.0000 100 chrXII:374209-374683 1.0000 100 chrXII:424194-424537 1.0000 100 chrXII:426899-427550 1.0000 100 chrXII:448529-448946 1.0000 100 chrXII:459609-460690 1.0000 100 chrXII:498257-499838 1.0000 100 chrXII:521752-522907 1.0000 100 chrXII:523066-523259 1.0000 100 chrXII:592323-592816 1.0000 100 chrXII:605142-605618 1.0000 100 chrXII:628073-628850 1.0000 100 chrXII:636754-639904 1.0000 100 chrXII:656838-657216 1.0000 100 chrXII:673488-674939 1.0000 100 chrXII:710595-710882 1.0000 100 chrXII:713145-713804 1.0000 100 chrXII:731044-732334 1.0000 100 chrXII:734602-734977 1.0000 100 chrXII:780628-780855 1.0000 100 chrXII:781023-781888 1.0000 100 chrXII:783914-784522 1.0000 100 chrXII:793772-795395 1.0000 100 chrXII:796271-797596 1.0000 100 chrXII:805396-806833 1.0000 100 chrXII:818502-820322 1.0000 100 chrXII:837722-839372 1.0000 100 chrXII:874977-875669 1.0000 100 chrXII:897184-897371 1.0000 100 chrXII:897534-898751 1.0000 100 chrXII:903403-903694 1.0000 100 chrXII:921712-922855 1.0000 100 chrXII:930496-931329 1.0000 100 chrXII:932067-932512 1.0000 100 chrXII:951175-953207 1.0000 100 chrXII:962807-963324 1.0000 100 chrXII:975783-976185 1.0000 100 chrXII:1018128-1019889 1.0000 100 chrXII:1028179-1028609 1.0000 100 chrXII:1051926-1052227 1.0000 100 chrXIII:5445-5662 1.0000 100 chrXIII:91412-92083 1.0000 100 chrXIII:131611-132073 1.0000 100 chrXIII:145910-146573 1.0000 100 chrXIII:159349-159766 1.0000 100 chrXIII:161769-162669 1.0000 100 chrXIII:168246-169040 1.0000 100 chrXIII:195943-196301 1.0000 100 chrXIII:224927-226572 1.0000 100 chrXIII:253355-253595 1.0000 100 chrXIII:258989-259442 1.0000 100 chrXIII:288090-289702 1.0000 100 chrXIII:290575-291172 1.0000 100 chrXIII:296718-298885 1.0000 100 chrXIII:302796-303132 1.0000 100 chrXIII:320799-321328 1.0000 100 chrXIII:347612-349126 1.0000 100 chrXIII:352076-353183 1.0000 100 chrXIII:362933-363314 1.0000 100 chrXIII:372177-372659 1.0000 100 chrXIII:378878-379656 1.0000 100 chrXIII:420314-420868 1.0000 100 chrXIII:463321-464277 1.0000 100 chrXIII:480400-480821 1.0000 100 chrXIII:499023-500619 1.0000 100 chrXIII:504904-505255 1.0000 100 chrXIII:549883-553200 1.0000 100 chrXIII:572601-573607 1.0000 100 chrXIII:586349-586907 1.0000 100 chrXIII:731895-733154 1.0000 100 chrXIII:747359-748149 1.0000 100 chrXIII:753034-756256 1.0000 100 chrXIII:768195-768448 1.0000 100 chrXIII:808076-808549 1.0000 100 chrXIII:837753-838266 1.0000 100 chrXIII:861167-861443 1.0000 100 chrXIII:872675-872939 1.0000 100 chrXIV:6619-6944 1.0000 100 chrXIV:61977-64542 1.0000 100 chrXIV:96009-96472 1.0000 100 chrXIV:102570-103209 1.0000 100 chrXIV:103471-103626 1.0000 100 chrXIV:104548-105595 1.0000 100 chrXIV:241382-241867 1.0000 100 chrXIV:302649-303815 1.0000 100 chrXIV:304268-304450 1.0000 100 chrXIV:330756-331118 1.0000 100 chrXIV:374664-375106 1.0000 100 chrXIV:415250-416201 1.0000 100 chrXIV:442786-443265 1.0000 100 chrXIV:443552-444798 1.0000 100 chrXIV:495191-495774 1.0000 100 chrXIV:499312-500728 1.0000 100 chrXIV:501515-502783 1.0000 100 chrXIV:518803-519131 1.0000 100 chrXIV:525069-525298 1.0000 100 chrXIV:546534-547599 1.0000 100 chrXIV:560607-560917 1.0000 100 chrXIV:568054-568604 1.0000 100 chrXIV:569606-570094 1.0000 100 chrXIV:602074-602532 1.0000 100 chrXIV:631513-632129 1.0000 100 chrXIV:632431-632927 1.0000 100 chrXIV:715976-716635 1.0000 100 chrXIV:725698-726582 1.0000 100 chrXIV:763970-764268 1.0000 100 chrXIV:778437-779211 1.0000 100 chrXIV:783724-784321 1.0000 100 chrXV:28763-30406 1.0000 100 chrXV:79732-80142 1.0000 100 chrXV:80367-81160 1.0000 100 chrXV:92703-94799 1.0000 100 chrXV:109558-110017 1.0000 100 chrXV:110862-111204 1.0000 100 chrXV:113483-113881 1.0000 100 chrXV:159273-160131 1.0000 100 chrXV:160336-160669 1.0000 100 chrXV:161096-161712 1.0000 100 chrXV:168081-168394 1.0000 100 chrXV:216279-216700 1.0000 100 chrXV:226325-226902 1.0000 100 chrXV:228091-228576 1.0000 100 chrXV:252849-254133 1.0000 100 chrXV:274451-275028 1.0000 100 chrXV:281990-282504 1.0000 100 chrXV:287192-288425 1.0000 100 chrXV:300908-302190 1.0000 100 chrXV:340129-340590 1.0000 100 chrXV:353919-354326 1.0000 100 chrXV:438468-439031 1.0000 100 chrXV:444671-446176 1.0000 100 chrXV:464292-464784 1.0000 100 chrXV:487432-487790 1.0000 100 chrXV:504951-505516 1.0000 100 chrXV:571638-572139 1.0000 100 chrXV:594307-594676 1.0000 100 chrXV:631883-632176 1.0000 100 chrXV:639119-639486 1.0000 100 chrXV:663434-664301 1.0000 100 chrXV:678153-678369 1.0000 100 chrXV:678610-679183 1.0000 100 chrXV:679353-679656 1.0000 100 chrXV:710120-710483 1.0000 100 chrXV:779700-780953 1.0000 100 chrXV:854019-854820 1.0000 100 chrXV:866216-867276 1.0000 100 chrXV:901428-901651 1.0000 100 chrXV:925182-925424 1.0000 100 chrXV:961242-962762 1.0000 100 chrXV:962968-963196 1.0000 100 chrXV:968119-968495 1.0000 100 chrXV:976378-976636 1.0000 100 chrXV:978801-979187 1.0000 100 chrXV:979469-981308 1.0000 100 chrXV:1003986-1004664 1.0000 100 chrXV:1025713-1026000 1.0000 100 chrXV:1027879-1029089 1.0000 100 chrXVI:55833-56430 1.0000 100 chrXVI:76305-76868 1.0000 100 chrXVI:134920-135281 1.0000 100 chrXVI:135437-135841 1.0000 100 chrXVI:172858-173935 1.0000 100 chrXVI:188336-189367 1.0000 100 chrXVI:209978-210507 1.0000 100 chrXVI:279981-280237 1.0000 100 chrXVI:280568-282976 1.0000 100 chrXVI:297600-298351 1.0000 100 chrXVI:302633-304296 1.0000 100 chrXVI:338105-338268 1.0000 100 chrXVI:338745-339272 1.0000 100 chrXVI:378641-380531 1.0000 100 chrXVI:404566-406656 1.0000 100 chrXVI:435460-436201 1.0000 100 chrXVI:519974-520543 1.0000 100 chrXVI:559991-560502 1.0000 100 chrXVI:572181-572720 1.0000 100 chrXVI:581838-582403 1.0000 100 chrXVI:622323-623083 1.0000 100 chrXVI:689347-689850 1.0000 100 chrXVI:699679-700656 1.0000 100 chrXVI:718367-719690 1.0000 100 chrXVI:731639-732726 1.0000 100 chrXVI:744058-744578 1.0000 100 chrXVI:768560-769488 1.0000 100 chrXVI:775657-776053 1.0000 100 chrXVI:794459-796622 1.0000 100 chrXVI:810574-812114 1.0000 100 chrXVI:819038-820012 1.0000 100 chrXVI:821652-822152 1.0000 100 chrXVI:856733-857169 1.0000 100 chrXVI:860167-860730 1.0000 100 chrXVI:879551-880572 1.0000 100 chrXVI:940795-942497 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAD1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAD1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAD1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 521 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 52100 N= 521 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--CAD1/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF AAAAAWYGMYCHMDMSSGGRATCGAACCS MEME-1 width = 29 sites = 86 llr = 1644 E-value = 2.7e-343 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAWYGMYCHMDMSSGGRATCGAACCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8898761:2112333:13:64:::aa::: pos.-specific C :::::13:54644:553:::2:8:::a75 probability G :11111:72222242357a42::a::::3 matrix T 11112352131212:2::::2a2::::31 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * ****** Entropy 1.2 * ** ******* (27.6 bits) 1.0 * * * **** ******* 0.7 **** * * ***** ******** 0.5 ***** * * ******* ******** 0.2 ******************** ******** 0.0 ----------------------------- Multilevel AAAAAATGCCCCCGCCGGGAATCGAACCC consensus TTC AT AAAAGCA GT T TG sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWYGMYCHMDMSSGGRATCGAACCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:1256698-1257294 + 56 7.93e-14 AAAATTGCAC AAAAAATGCGGAAGCCGGGAATCGAACCC GGGCCCCATG chrXV:226325-226902 + 42 9.02e-13 AATTCAACAA AAAATTTGCGCAAGCCCGGAATCGAACCG GGGGCCCAAC chrXV:281990-282504 - 15 2.08e-12 GTGGACAAAA AAGAAATGCGCAAGCCCGGAATCGAACCG GGGGCCCAAC chrX:396577-396956 + 4 2.08e-12 AAA AAGAAATGCGCAAGCCCGGAATCGAACCG GGGGCCCAAC chrXVI:860167-860730 - 29 3.94e-12 AGCAAAAAAT AAAATCTGCGCAAGCCCGGAATCGAACCG GGGGCCCAAC chrVIII:134112-134683 - 23 9.74e-12 TCATTTTAGC AAAAAAAGGTCCTACCCGGATTCGAACCG GGGTTGTCCG chrV:442994-443363 + 68 9.74e-12 ATTTTCAAAA AAAATATGGTCTCTAGCGGGATCGAACCG CTGA chrIII:168087-168550 + 27 9.74e-12 ATCTGTATTC AAAAAAAGGTCCTACCCGGATTCGAACCG GGGTTGTCCG chrX:355186-355800 - 62 1.13e-11 CAGCTTCAAA AAAAATCTCCGCGACGGGGAATTGAACCC CGATCTGGCA chrX:204553-204990 - 63 1.13e-11 AGGGCCAAA AAAAATCTCCGCGACGGGGAATTGAACCC CGATCTGGCA chrIX:336095-336627 + 32 1.13e-11 GTTATGGTAA AAAAATCTCCGCGACGGGGAATTGAACCC CGATCTGGCA chrII:405699-406298 - 61 1.13e-11 GAGTAGCCAA AAAAATCTCCGCGACGGGGAATTGAACCC CGATCTGGCA chrVII:328379-328945 - 20 1.30e-11 AACTTACGAC AAAAAACTCCGATACGGGGAGTCGAACCC CGGTCTCCAC chrX:390814-391345 + 8 1.99e-11 ACGTATA AAAATATGCTCCAGGGGAGGTTCGAACTC TCGACCTTCA chrVI:162041-162581 - 15 1.99e-11 CAGAAAAAAA AGAAACTGCGCAAGCCCGGAATCGAACCG GGGGCCCAAC chrXIV:569606-570094 + 61 2.29e-11 ATGCAAAAAA AAAGAATGGTCTCTAGCGGGATCGAACCG CTGATCCCCG chrXII:1051926-1052227 + 39 2.62e-11 AAAGTAAAAA AAATAATGGTCTCTAGCGGGATCGAACCG CTGATCCCCG chrXI:162238-162730 + 47 2.62e-11 CTGCTGGTGT AAAAAACACTCACGATGGGGGTCGAACCC ATAATCTTCT chrIV:1016952-1017521 + 15 2.62e-11 GAAAATAAAA AAGAAACTCCGAAGCGGGGAGTCGAACCC CGGTCTCCAC chrIV:667736-668255 + 56 2.62e-11 GGAGAAAAAA TAAAAATGGTCTCTAGCGGGATCGAACCG CTGATCCCCG chrXVI:581838-582403 - 42 3.93e-11 ATGCAATAAA AAAGAAAGCCCTGTAGGGGGCTCGAACCC CTAACCTTAT chrXII:426899-427550 - 7 4.48e-11 GAAGCTTAAA AAAATTCTCCGCGACGGGGAATTGAACCC CGATCT chrIV:568705-569342 - 40 4.48e-11 TCAATTAAAA AAAATTCTCCGCGACGGGGAATTGAACCC CGATCTGGCA chrVII:401432-401619 + 46 5.11e-11 AACTTTCAAA AAAATACTCCGATACGGGGAGTCGAACCC CGGTCTCCAC chrXIII:480400-480821 + 55 5.82e-11 AATCTTCAAA AAAAGAAGCCCTGTAGGGGGCTCGAACCC CTAACCTTAT chrIV:83343-83818 - 66 5.82e-11 AAAAAT TAAACTTGCGCAAGCCCGGAATCGAACCG GGGGCCCAAC chrXII:214673-215069 + 56 8.52e-11 AAAAGTAAAA AATAAATGGACGCAACCGGAATCGAACCG ATGACCTCTT chrIX:299974-300473 + 49 8.52e-11 AAAATGGTAA AAAGATAGCCCTGTAGGGGGCTCGAACCC CTAACCTTAT chrXIII:586349-586907 + 52 9.66e-11 GATGTCTTCA AAAAAATGATTTCGCCCAGGATCGAACTG GGGACGTTCT chrXIII:372177-372659 + 71 9.66e-11 TAAAGTGCTA AAAAAATGATTTCGCCCAGGATCGAACTG G chrVII:823339-823713 - 57 9.66e-11 TGTAATCTTC AAAAAATGATTTCGCCCAGGATCGAACTG GGGACGTTCT chrV:469272-469749 - 48 9.66e-11 TGGCATATTT AAAAAATGATTTCGCCCAGGATCGAACTG GGGACGTTCT chrV:130814-131422 + 8 9.66e-11 GGGGGAA AAAAATAGGTCTTACCCGGATTCGAACCG GGGTTGTTCG chrIV:644913-645367 + 57 9.66e-11 AAGCCACAGT TAAAAAAGGTCCTACCCGGATTCGAACCG GGGTTGTCCG chrXV:976378-976636 - 14 1.09e-10 ATTAGCAAAA AAATATTGCTCCAGGGGAGGTTCGAACTC TCGACCTTCA chrX:422736-423232 - 53 1.09e-10 ACAAAAAAAG AAAATGTGCTCCAGGGGAGGTTCGAACTC TCGACCTTCA chrXIV:96009-96472 + 45 1.24e-10 ATGTCATCAA AAAATTTGAGCGGTACGAGAATCGAACCC GTGTCCCCAC chrXV:438468-439031 - 17 1.58e-10 TGACAAAAAT AAAGAACTCCTCATAGGGGGCTCGAACCC CTGACATTTC chrXIV:632431-632927 - 21 1.58e-10 GAAATAAGAA AAAAAACGACCCCAGTGAGGGTTGAACTC ACGATCTTGC chrVIII:115841-116410 + 26 1.58e-10 AAATCAATGC AAAAAATGCTTCCAATCGGATTTGAACCG ATGATCTCCA chrVII:730966-731432 - 39 1.58e-10 CATTTCAAGC AAAAAACGACCCCAGTGAGGGTTGAACTC ACGATCTTGC chrVI:180628-181280 + 64 1.58e-10 TCCTTAAAAA AAGGACTGCGCAAGCCCGGAATCGAACCG GGGGCCCA chrII:266174-266652 - 65 1.58e-10 GTATTCA AAAAAATGCTTCCAATCGGATTTGAACCG ATGATCTCCA chrIV:1175742-1176113 - 2 2.25e-10 CCGTGCTCGG CAAAAATGCTCCAGGGGAGGTTCGAACTC T chrVI:101039-101921 - 26 2.83e-10 GATATGCAAA AAAAAGGGGGCGAGCTGGGAATTGAACCC AGGGCCTCTC chrV:176856-177480 - 30 3.56e-10 AGCCATCAAA AAAGTACTCCGATACGGGGAGTCGAACCC CGGTCTCCAC chrX:414747-415363 - 11 5.55e-10 GCAAGAAAAA AATATTAGCCCTGTAGGGGGCTCGAACCC CTAACCTTAT chrXIII:420314-420868 + 41 6.89e-10 ACGGCTGAGA TAAAAATGATTTCGCCCAGGATCGAACTG GGGACGTTCT chrXV:464292-464784 - 41 7.67e-10 ATAATTAAAA ATAAAAGGGGCGAGCTGGGAATTGAACCC AGGGCCTCTC chrXII:374209-374683 - 9 7.67e-10 GTCGGAGCAA AAAAATCTTCCCCGCCAGGACTTGAACCT GGAATCTT chrVII:774147-774750 - 1 7.67e-10 TAAAAGTAAA AAAATTTGGACGAGTCCGGAATCGAACCG chrVII:736174-736651 - 27 7.67e-10 TTATTTAAAA AAACAACACTCACGATGGGGGTCGAACCC ATAATCTTCT chrIV:619704-620190 + 66 7.67e-10 AAAATGTATA AAAAATCTTCCCCGCCAGGACTTGAACCT GGAATC chrIV:520660-521457 - 13 1.05e-09 GGTTAAAAAA TAGAAAAGGTCCTACCCGGATTCGAACCG GGGTTGTCCG chrXIII:290575-291172 - 27 1.58e-09 TTCTTCAAAA AGAAGACTCCGATACGGGGAGTCGAACCC CGGTCTCCAC chrVIII:475479-475913 + 54 1.58e-09 AAAATCGATG TTAAAATGTTCCAACCGAGGATCGAACTC GGGACCTTTG chrXII:975783-976185 + 43 1.75e-09 ATGCAAAAAA AATAAACGACCCCAGTGAGGGTTGAACTC ACGATCTTGC chrVII:541714-542171 - 7 1.93e-09 GGTAAGAAAA AGAACACTCCGATACGGGGAGTCGAACCC CGGTCT chrVII:411993-412591 + 46 1.93e-09 AGAAAAAAAT AAAACTTGATTTCGCCCAGGATCGAACTG GGGACGTTCT chrXIII:131611-132073 + 27 2.13e-09 AAAAGAAGAA ACAAAGCACTCACGATGGGGGTCGAACCC ATAATCTTCT chrXI:490726-491296 - 57 2.13e-09 TAAAAGTAAA AAAATTCTTCCCCGCCAGGACTTGAACCT GGAATCTTCT chrX:374179-374874 + 24 2.13e-09 CACGGAAGAA ACAAAGCACTCACGATGGGGGTCGAACCC ATAATCTTCT chrV:288140-288790 + 22 3.77e-09 CTAACAATAA AAAAAACGACACCAGCAGGATTTGAACCA GCGCGGGCAG chrXIV:631513-632129 + 69 4.53e-09 TAAAAATAAA TCAATGGGGGCGAGCCGGGACTCGAACCC GGG chrII:326455-327169 + 24 4.96e-09 AAAAAAATAA AGAGTTTGATCCAACCGAGGTTCGAACTC GGGATCTTCG chrIV:980737-981157 + 71 5.43e-09 AAATTTTTGG TAAAAACGACAACTGCAGGACTCGAACCT G chrII:226969-227374 - 13 5.43e-09 ACTGTCCAAA AAATAACGACAACTGCAGGACTCGAACCT GCGCGGGCAA chrXI:74387-75017 - 23 5.94e-09 AAAAGTTAAA AATAAGCGACCCCAGTGAGGGTTGAACTC ACGATCTTGC chrXVI:856733-857169 - 51 7.09e-09 TAATCAAAAA TTAAAATGGACGAGTCCGGAATCGAACCG GAGACCTCTC chrIII:123303-123818 + 61 7.74e-09 ATTGTAAAAA CAATGTGGGGCGAGCCGGGACTCGAACCC GGGACCTCCC chrII:642842-643252 + 4 7.74e-09 AAA AAAAGAAGCTCGCACTCAGGATCGAACTA AGGACCAACA chrVII:779388-779947 - 48 1.19e-08 ATTAAAAAAG TAATCTTGAGCGGTACGAGAATCGAACCC GTGTCCCCAC chrIV:437553-438156 - 27 2.64e-08 GGGAATATAA AAATGACGACAACTGCAGGACTCGAACCT GCGCGGGCAA chrIV:946145-946635 - 38 2.85e-08 GCTTGACATA AAAAAATCTCCCGGGGGCGAGTCGAACGC CCGATCTCAA chrV:492204-492576 + 6 3.08e-08 GAAAA ATAATCCTTCCCCGCCAGGACTTGAACCT GGAATCTTCT chrXIV:725698-726582 + 38 3.32e-08 AAATAAAAAA AAATACTGAAGGATGCGAGGTTCGAACTC GCGCGGACAA chrXII:628073-628850 - 64 3.57e-08 GAAGGCAA AAATAATGGTTGCTAAGAGATTCGAACTC TTGCATCTTA chrVII:422890-423484 - 46 3.57e-08 AAATGGAAAA AAATAATGGTTGCTAAGAGATTCGAACTC TTGCATCTTA chrXIII:362933-363314 - 40 3.85e-08 TGAAAAAAAA AGAAAATGCCATCTCCTAGAATCGAACCA GGGTTTCATC chrIV:1201507-1202114 - 40 5.14e-08 TTTTGAATGT GTTATTAGCCCTGTAGGGGGCTCGAACCC CTAACCTTAT chrXIII:837753-838266 - 35 5.93e-08 CAAAAGTAAA AAAATATCTCCCGGGGGCGAGTCGAACGC CCGATCTCAA chrX:415690-416243 + 9 7.29e-08 ATAAAAAA ATAAATTGAAACGGACAGGAATTGAACCT GCAACCCTTC chrV:311690-312304 + 70 7.81e-08 TACAAAAAGA TTTCATTGGACGCAACCGGAATCGAACCG AT chrXV:274451-275028 - 62 9.54e-08 TCACAAAAAA GAAATGCGTCACAGACAGGATTCGAACCT GCGCAGGTAA chrXVI:744058-744578 - 65 1.24e-07 AGGGAAA AAATTTTGCCACCTGTCAGAATTGAACTA ACGACCTTTG chrII:347414-348011 - 2 3.99e-07 ATTAAAAAAA TATTACTGAAGGATGCGAGGTTCGAACTC G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWYGMYCHMDMSSGGRATCGAACCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1256698-1257294 7.9e-14 55_[+1]_16 chrXV:226325-226902 9e-13 41_[+1]_30 chrXV:281990-282504 2.1e-12 14_[-1]_57 chrX:396577-396956 2.1e-12 3_[+1]_68 chrXVI:860167-860730 3.9e-12 28_[-1]_43 chrVIII:134112-134683 9.7e-12 22_[-1]_49 chrV:442994-443363 9.7e-12 67_[+1]_4 chrIII:168087-168550 9.7e-12 26_[+1]_45 chrX:355186-355800 1.1e-11 61_[-1]_10 chrX:204553-204990 1.1e-11 62_[-1]_9 chrIX:336095-336627 1.1e-11 31_[+1]_40 chrII:405699-406298 1.1e-11 60_[-1]_11 chrVII:328379-328945 1.3e-11 19_[-1]_52 chrX:390814-391345 2e-11 7_[+1]_64 chrVI:162041-162581 2e-11 14_[-1]_57 chrXIV:569606-570094 2.3e-11 60_[+1]_11 chrXII:1051926-1052227 2.6e-11 38_[+1]_33 chrXI:162238-162730 2.6e-11 46_[+1]_25 chrIV:1016952-1017521 2.6e-11 14_[+1]_57 chrIV:667736-668255 2.6e-11 55_[+1]_16 chrXVI:581838-582403 3.9e-11 41_[-1]_30 chrXII:426899-427550 4.5e-11 6_[-1]_65 chrIV:568705-569342 4.5e-11 39_[-1]_32 chrVII:401432-401619 5.1e-11 45_[+1]_26 chrXIII:480400-480821 5.8e-11 54_[+1]_17 chrIV:83343-83818 5.8e-11 65_[-1]_6 chrXII:214673-215069 8.5e-11 55_[+1]_16 chrIX:299974-300473 8.5e-11 48_[+1]_23 chrXIII:586349-586907 9.7e-11 51_[+1]_20 chrXIII:372177-372659 9.7e-11 70_[+1]_1 chrVII:823339-823713 9.7e-11 56_[-1]_15 chrV:469272-469749 9.7e-11 47_[-1]_24 chrV:130814-131422 9.7e-11 7_[+1]_64 chrIV:644913-645367 9.7e-11 56_[+1]_15 chrXV:976378-976636 1.1e-10 13_[-1]_58 chrX:422736-423232 1.1e-10 52_[-1]_19 chrXIV:96009-96472 1.2e-10 44_[+1]_27 chrXV:438468-439031 1.6e-10 16_[-1]_55 chrXIV:632431-632927 1.6e-10 20_[-1]_51 chrVIII:115841-116410 1.6e-10 25_[+1]_46 chrVII:730966-731432 1.6e-10 38_[-1]_33 chrVI:180628-181280 1.6e-10 63_[+1]_8 chrII:266174-266652 1.6e-10 64_[-1]_7 chrIV:1175742-1176113 2.2e-10 1_[-1]_70 chrVI:101039-101921 2.8e-10 25_[-1]_46 chrV:176856-177480 3.6e-10 29_[-1]_42 chrX:414747-415363 5.6e-10 10_[-1]_61 chrXIII:420314-420868 6.9e-10 40_[+1]_31 chrXV:464292-464784 7.7e-10 40_[-1]_31 chrXII:374209-374683 7.7e-10 8_[-1]_63 chrVII:774147-774750 7.7e-10 [-1]_71 chrVII:736174-736651 7.7e-10 26_[-1]_45 chrIV:619704-620190 7.7e-10 65_[+1]_6 chrIV:520660-521457 1.1e-09 12_[-1]_59 chrXIII:290575-291172 1.6e-09 26_[-1]_45 chrVIII:475479-475913 1.6e-09 53_[+1]_18 chrXII:975783-976185 1.7e-09 42_[+1]_29 chrVII:541714-542171 1.9e-09 6_[-1]_65 chrVII:411993-412591 1.9e-09 45_[+1]_26 chrXIII:131611-132073 2.1e-09 26_[+1]_45 chrXI:490726-491296 2.1e-09 56_[-1]_15 chrX:374179-374874 2.1e-09 23_[+1]_48 chrV:288140-288790 3.8e-09 21_[+1]_50 chrXIV:631513-632129 4.5e-09 68_[+1]_3 chrII:326455-327169 5e-09 23_[+1]_48 chrIV:980737-981157 5.4e-09 70_[+1]_1 chrII:226969-227374 5.4e-09 12_[-1]_59 chrXI:74387-75017 5.9e-09 22_[-1]_49 chrXVI:856733-857169 7.1e-09 50_[-1]_21 chrIII:123303-123818 7.7e-09 60_[+1]_11 chrII:642842-643252 7.7e-09 3_[+1]_68 chrVII:779388-779947 1.2e-08 47_[-1]_24 chrIV:437553-438156 2.6e-08 26_[-1]_45 chrIV:946145-946635 2.9e-08 37_[-1]_34 chrV:492204-492576 3.1e-08 5_[+1]_66 chrXIV:725698-726582 3.3e-08 37_[+1]_34 chrXII:628073-628850 3.6e-08 63_[-1]_8 chrVII:422890-423484 3.6e-08 45_[-1]_26 chrXIII:362933-363314 3.8e-08 39_[-1]_32 chrIV:1201507-1202114 5.1e-08 39_[-1]_32 chrXIII:837753-838266 5.9e-08 34_[-1]_37 chrX:415690-416243 7.3e-08 8_[+1]_63 chrV:311690-312304 7.8e-08 69_[+1]_2 chrXV:274451-275028 9.5e-08 61_[-1]_10 chrXVI:744058-744578 1.2e-07 64_[-1]_7 chrII:347414-348011 4e-07 1_[-1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWYGMYCHMDMSSGGRATCGAACCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAWYGMYCHMDMSSGGRATCGAACCS width=29 seqs=86 chrIV:1256698-1257294 ( 56) AAAAAATGCGGAAGCCGGGAATCGAACCC 1 chrXV:226325-226902 ( 42) AAAATTTGCGCAAGCCCGGAATCGAACCG 1 chrXV:281990-282504 ( 15) AAGAAATGCGCAAGCCCGGAATCGAACCG 1 chrX:396577-396956 ( 4) AAGAAATGCGCAAGCCCGGAATCGAACCG 1 chrXVI:860167-860730 ( 29) AAAATCTGCGCAAGCCCGGAATCGAACCG 1 chrVIII:134112-134683 ( 23) AAAAAAAGGTCCTACCCGGATTCGAACCG 1 chrV:442994-443363 ( 68) AAAATATGGTCTCTAGCGGGATCGAACCG 1 chrIII:168087-168550 ( 27) AAAAAAAGGTCCTACCCGGATTCGAACCG 1 chrX:355186-355800 ( 62) AAAAATCTCCGCGACGGGGAATTGAACCC 1 chrX:204553-204990 ( 63) AAAAATCTCCGCGACGGGGAATTGAACCC 1 chrIX:336095-336627 ( 32) AAAAATCTCCGCGACGGGGAATTGAACCC 1 chrII:405699-406298 ( 61) AAAAATCTCCGCGACGGGGAATTGAACCC 1 chrVII:328379-328945 ( 20) AAAAAACTCCGATACGGGGAGTCGAACCC 1 chrX:390814-391345 ( 8) AAAATATGCTCCAGGGGAGGTTCGAACTC 1 chrVI:162041-162581 ( 15) AGAAACTGCGCAAGCCCGGAATCGAACCG 1 chrXIV:569606-570094 ( 61) AAAGAATGGTCTCTAGCGGGATCGAACCG 1 chrXII:1051926-1052227 ( 39) AAATAATGGTCTCTAGCGGGATCGAACCG 1 chrXI:162238-162730 ( 47) AAAAAACACTCACGATGGGGGTCGAACCC 1 chrIV:1016952-1017521 ( 15) AAGAAACTCCGAAGCGGGGAGTCGAACCC 1 chrIV:667736-668255 ( 56) TAAAAATGGTCTCTAGCGGGATCGAACCG 1 chrXVI:581838-582403 ( 42) AAAGAAAGCCCTGTAGGGGGCTCGAACCC 1 chrXII:426899-427550 ( 7) AAAATTCTCCGCGACGGGGAATTGAACCC 1 chrIV:568705-569342 ( 40) AAAATTCTCCGCGACGGGGAATTGAACCC 1 chrVII:401432-401619 ( 46) AAAATACTCCGATACGGGGAGTCGAACCC 1 chrXIII:480400-480821 ( 55) AAAAGAAGCCCTGTAGGGGGCTCGAACCC 1 chrIV:83343-83818 ( 66) TAAACTTGCGCAAGCCCGGAATCGAACCG 1 chrXII:214673-215069 ( 56) AATAAATGGACGCAACCGGAATCGAACCG 1 chrIX:299974-300473 ( 49) AAAGATAGCCCTGTAGGGGGCTCGAACCC 1 chrXIII:586349-586907 ( 52) AAAAAATGATTTCGCCCAGGATCGAACTG 1 chrXIII:372177-372659 ( 71) AAAAAATGATTTCGCCCAGGATCGAACTG 1 chrVII:823339-823713 ( 57) AAAAAATGATTTCGCCCAGGATCGAACTG 1 chrV:469272-469749 ( 48) AAAAAATGATTTCGCCCAGGATCGAACTG 1 chrV:130814-131422 ( 8) AAAAATAGGTCTTACCCGGATTCGAACCG 1 chrIV:644913-645367 ( 57) TAAAAAAGGTCCTACCCGGATTCGAACCG 1 chrXV:976378-976636 ( 14) AAATATTGCTCCAGGGGAGGTTCGAACTC 1 chrX:422736-423232 ( 53) AAAATGTGCTCCAGGGGAGGTTCGAACTC 1 chrXIV:96009-96472 ( 45) AAAATTTGAGCGGTACGAGAATCGAACCC 1 chrXV:438468-439031 ( 17) AAAGAACTCCTCATAGGGGGCTCGAACCC 1 chrXIV:632431-632927 ( 21) AAAAAACGACCCCAGTGAGGGTTGAACTC 1 chrVIII:115841-116410 ( 26) AAAAAATGCTTCCAATCGGATTTGAACCG 1 chrVII:730966-731432 ( 39) AAAAAACGACCCCAGTGAGGGTTGAACTC 1 chrVI:180628-181280 ( 64) AAGGACTGCGCAAGCCCGGAATCGAACCG 1 chrII:266174-266652 ( 65) AAAAAATGCTTCCAATCGGATTTGAACCG 1 chrIV:1175742-1176113 ( 2) CAAAAATGCTCCAGGGGAGGTTCGAACTC 1 chrVI:101039-101921 ( 26) AAAAAGGGGGCGAGCTGGGAATTGAACCC 1 chrV:176856-177480 ( 30) AAAGTACTCCGATACGGGGAGTCGAACCC 1 chrX:414747-415363 ( 11) AATATTAGCCCTGTAGGGGGCTCGAACCC 1 chrXIII:420314-420868 ( 41) TAAAAATGATTTCGCCCAGGATCGAACTG 1 chrXV:464292-464784 ( 41) ATAAAAGGGGCGAGCTGGGAATTGAACCC 1 chrXII:374209-374683 ( 9) AAAAATCTTCCCCGCCAGGACTTGAACCT 1 chrVII:774147-774750 ( 1) AAAATTTGGACGAGTCCGGAATCGAACCG 1 chrVII:736174-736651 ( 27) AAACAACACTCACGATGGGGGTCGAACCC 1 chrIV:619704-620190 ( 66) AAAAATCTTCCCCGCCAGGACTTGAACCT 1 chrIV:520660-521457 ( 13) TAGAAAAGGTCCTACCCGGATTCGAACCG 1 chrXIII:290575-291172 ( 27) AGAAGACTCCGATACGGGGAGTCGAACCC 1 chrVIII:475479-475913 ( 54) TTAAAATGTTCCAACCGAGGATCGAACTC 1 chrXII:975783-976185 ( 43) AATAAACGACCCCAGTGAGGGTTGAACTC 1 chrVII:541714-542171 ( 7) AGAACACTCCGATACGGGGAGTCGAACCC 1 chrVII:411993-412591 ( 46) AAAACTTGATTTCGCCCAGGATCGAACTG 1 chrXIII:131611-132073 ( 27) ACAAAGCACTCACGATGGGGGTCGAACCC 1 chrXI:490726-491296 ( 57) AAAATTCTTCCCCGCCAGGACTTGAACCT 1 chrX:374179-374874 ( 24) ACAAAGCACTCACGATGGGGGTCGAACCC 1 chrV:288140-288790 ( 22) AAAAAACGACACCAGCAGGATTTGAACCA 1 chrXIV:631513-632129 ( 69) TCAATGGGGGCGAGCCGGGACTCGAACCC 1 chrII:326455-327169 ( 24) AGAGTTTGATCCAACCGAGGTTCGAACTC 1 chrIV:980737-981157 ( 71) TAAAAACGACAACTGCAGGACTCGAACCT 1 chrII:226969-227374 ( 13) AAATAACGACAACTGCAGGACTCGAACCT 1 chrXI:74387-75017 ( 23) AATAAGCGACCCCAGTGAGGGTTGAACTC 1 chrXVI:856733-857169 ( 51) TTAAAATGGACGAGTCCGGAATCGAACCG 1 chrIII:123303-123818 ( 61) CAATGTGGGGCGAGCCGGGACTCGAACCC 1 chrII:642842-643252 ( 4) AAAAGAAGCTCGCACTCAGGATCGAACTA 1 chrVII:779388-779947 ( 48) TAATCTTGAGCGGTACGAGAATCGAACCC 1 chrIV:437553-438156 ( 27) AAATGACGACAACTGCAGGACTCGAACCT 1 chrIV:946145-946635 ( 38) AAAAAATCTCCCGGGGGCGAGTCGAACGC 1 chrV:492204-492576 ( 6) ATAATCCTTCCCCGCCAGGACTTGAACCT 1 chrXIV:725698-726582 ( 38) AAATACTGAAGGATGCGAGGTTCGAACTC 1 chrXII:628073-628850 ( 64) AAATAATGGTTGCTAAGAGATTCGAACTC 1 chrVII:422890-423484 ( 46) AAATAATGGTTGCTAAGAGATTCGAACTC 1 chrXIII:362933-363314 ( 40) AGAAAATGCCATCTCCTAGAATCGAACCA 1 chrIV:1201507-1202114 ( 40) GTTATTAGCCCTGTAGGGGGCTCGAACCC 1 chrXIII:837753-838266 ( 35) AAAATATCTCCCGGGGGCGAGTCGAACGC 1 chrX:415690-416243 ( 9) ATAAATTGAAACGGACAGGAATTGAACCT 1 chrV:311690-312304 ( 70) TTTCATTGGACGCAACCGGAATCGAACCG 1 chrXV:274451-275028 ( 62) GAAATGCGTCACAGACAGGATTCGAACCT 1 chrXVI:744058-744578 ( 65) AAATTTTGCCACCTGTCAGAATTGAACTA 1 chrII:347414-348011 ( 2) TATTACTGAAGGATGCGAGGTTCGAACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWYGMYCHMDMSSGGRATCGAACCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 37512 bayes= 8.28838 E= 2.7e-343 140 -304 -304 -114 142 -246 -172 -192 148 -1307 -172 -192 132 -304 -124 -127 110 -204 -172 -41 86 -146 -124 -8 -127 86 -204 63 -273 -304 193 -64 -41 124 20 -173 -192 109 -24 18 -173 166 -14 -127 -34 100 -14 -64 -8 109 -4 -141 8 -1307 117 -34 -14 138 4 -373 -373 135 76 -92 -141 86 145 -472 -8 -304 184 -1307 -1307 -1307 238 -1307 100 -1307 100 -1307 48 -14 -4 -56 -1307 -1307 -1307 170 -1307 198 -1307 -34 -1307 -1307 238 -1307 170 -1307 -1307 -1307 170 -1307 -1307 -1307 -1307 238 -1307 -1307 -1307 191 -304 -27 -273 145 76 -156 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWYGMYCHMDMSSGGRATCGAACCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 86 E= 2.7e-343 0.813953 0.023256 0.023256 0.139535 0.825581 0.034884 0.058140 0.081395 0.860465 0.000000 0.058140 0.081395 0.767442 0.023256 0.081395 0.127907 0.662791 0.046512 0.058140 0.232558 0.558140 0.069767 0.081395 0.290698 0.127907 0.348837 0.046512 0.476744 0.046512 0.023256 0.732558 0.197674 0.232558 0.453488 0.220930 0.093023 0.081395 0.406977 0.162791 0.348837 0.093023 0.604651 0.174419 0.127907 0.244186 0.383721 0.174419 0.197674 0.290698 0.406977 0.186047 0.116279 0.325581 0.000000 0.430233 0.244186 0.279070 0.500000 0.197674 0.023256 0.023256 0.488372 0.325581 0.162791 0.116279 0.348837 0.523256 0.011628 0.290698 0.023256 0.686047 0.000000 0.000000 0.000000 1.000000 0.000000 0.616279 0.000000 0.383721 0.000000 0.430233 0.174419 0.186047 0.209302 0.000000 0.000000 0.000000 1.000000 0.000000 0.755814 0.000000 0.244186 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.720930 0.023256 0.255814 0.046512 0.523256 0.325581 0.104651 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWYGMYCHMDMSSGGRATCGAACCS MEME-1 regular expression -------------------------------------------------------------------------------- AAAA[AT][AT][TC]G[CAG][CT]C[CA][CA][GAT][CA][CG][GC][GA]G[AG][AT]T[CT]GAAC[CT][CG] -------------------------------------------------------------------------------- Time 262.11 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCYTWAMCCACTVVGCYAHV MEME-2 width = 21 sites = 85 llr = 1146 E-value = 1.7e-151 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCYTWAMCCACTVVGCYAHV MEME-2 Description -------------------------------------------------------------------------------- Simplified A 221:1356:3a::433::a44 pos.-specific C 43632114a6:8:22:a7:42 probability G 45121:2::1:::347::::3 matrix T ::25562::::2a1:::3:31 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * *** * * Relative 1.4 * *** * * Entropy 1.2 * *** **** (19.4 bits) 1.0 * *** **** 0.7 * ****** ***** 0.5 **** ****** ****** 0.2 ********************* 0.0 --------------------- Multilevel CGCTTTAACCACTAGGCCACA consensus GC CCATC A GAA T AG sequence A CC TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCCACTVVGCYAHV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:258989-259442 + 49 1.04e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATACT chrXII:167780-168253 + 34 1.04e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATATG chrX:523833-524392 + 6 1.04e-11 TCTTT CGCCTTAACCACTCGGCCAAG TTGCCTTTAA chrIV:1305420-1305912 - 19 1.04e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTTAAT chrXVI:689347-689850 - 22 5.79e-11 TCAAGTCTGT CGCCTTAACCACTCGGCCATA GTGCCCAAAA chrIV:1150714-1151169 + 25 2.97e-10 TAGCAGGCAT CGCCTTAACCACTCGGCCACT GGGACTGAAA chrXII:592323-592816 + 75 9.42e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCC chrX:617697-618155 - 48 9.42e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrXVI:819038-820012 - 59 2.15e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATTCT chrXIV:602074-602532 - 64 2.15e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATTGT chrXII:734602-734977 - 68 2.15e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAAACT chrV:550933-551823 + 5 2.15e-09 CGGT GCCTTAACCAACTGGGCCAAG AGACCTGTAA chrII:197192-197837 - 35 2.15e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTTGAT chrXII:962807-963324 + 15 4.58e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTCGA chrX:424271-424716 + 47 4.58e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCATCTT chrIV:519651-519904 - 21 4.58e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTAAA chrXV:353919-354326 + 16 5.48e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCAGTAA chrXIV:560607-560917 + 28 5.48e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCCCGTT chrX:58997-59396 + 1 5.48e-09 . CGCCTTACCAACTTGGCCATA GAAGCTTCTA chrVIII:115841-116410 + 79 5.48e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA G chrII:266174-266652 - 20 5.48e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCAGTTT chrXII:605142-605618 + 77 6.53e-09 ATAAGCACGA AGCTCTAACCACTGAGCTACA CGA chrXV:340129-340590 + 37 9.18e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAACAGAT chrXI:490726-491296 - 12 9.18e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAACAAGA chrX:233654-234192 - 71 9.18e-09 GTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAACAAGA chrV:492204-492576 + 59 9.18e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAATAGGA chrXVI:856733-857169 - 6 1.08e-08 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCC chrXII:656838-657216 + 4 1.08e-08 GAG CGCGCTACCGACTACGCCACA CGCCCAATTT chrIV:409963-410768 - 69 1.08e-08 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCAATAT chrVII:115324-115706 - 28 1.50e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrIV:359349-359784 - 66 1.50e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXV:228091-228576 - 53 2.75e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTAATA chrIII:127516-127891 - 68 2.75e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCATTTT chrXIV:374664-375106 - 39 8.26e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAG TCCGCTTATT chrXVI:559991-560502 + 68 1.20e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTCAAT chrVIII:358285-358887 + 8 1.20e-07 AGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACT chrII:36241-36596 - 35 1.20e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACA chrV:435574-436032 + 46 1.93e-07 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTA chrXIV:442786-443265 - 36 3.01e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrVII:205310-205758 - 42 3.01e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrXV:663434-664301 + 43 3.72e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTAT chrVII:823339-823713 - 11 3.72e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTCT chrV:469272-469749 - 2 3.72e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG A chrXVI:744058-744578 - 21 5.58e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCTTTTA chrVIII:466645-467298 - 74 5.58e-07 AGTGCA ACGCTCTACCACTAAGCTAAG GAGGCTAAAA chrVII:661488-661983 - 69 5.58e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCAAATT chrX:396577-396956 + 55 6.15e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTACT chrVII:845280-846001 - 64 6.15e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTGTT chrIV:83343-83818 - 23 6.15e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTAAGT chrIII:142609-142969 + 7 6.15e-07 AACGTT GGATTTTACCACTAAACCACT TGCGCTAGTA chrXIII:195943-196301 + 73 8.16e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCTT chrXII:92346-92731 - 65 8.16e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCTTATT chrI:138962-139371 - 41 8.16e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGTACT chrX:422736-423232 - 8 8.95e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCAT chrX:390814-391345 + 61 8.95e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCACTAT chrX:353992-354487 - 60 9.79e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTGATA chrVI:167213-167697 - 37 9.79e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTCATT chrXIV:6619-6944 + 44 1.51e-06 CCCACTCGTT ACCCTGCCCCACTCAACCATA CCACTCCCAA chrVIII:556586-556914 - 55 1.51e-06 CCCACTCGTT ACCCTGCCCCACTCAACCATA CCACTCCCAA chrXVI:775657-776053 + 6 1.64e-06 ATCTG CTGCGCTACCACTGCGCCATA CGAGCTTTTG chrII:642842-643252 + 56 1.64e-06 TTGCAATCTG CTGCGCTACCACTGCGCCATA CGAGCTTTCT chrIII:74-1060 + 30 1.93e-06 CCTCCAACTA CCCATATCCAACTCCACTACC GCTTACCCTA chrXIII:808076-808549 + 30 2.26e-06 CAGAACCGAA AGTGATAACCACTACACTATA GGACCTTTTT chrXII:448529-448946 + 9 2.26e-06 AAACCGAA AGTGATAACCACTACACTATA GGACCGGAAC chrXI:302682-303255 - 5 2.26e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTT chrVII:878555-879036 + 45 2.26e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTTCATCTT chrVII:287156-287731 + 37 2.26e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTTCATCTT chrV:130814-131422 + 60 2.26e-06 CAAAACCGAA AGTGATAACCACTACACTATA AAACCTCTTA chrIV:802548-803004 + 51 2.26e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCGACAA chrIII:168087-168550 + 79 2.26e-06 CAAAACCGAA AGTGATAACCACTACACTATA G chrII:350602-351050 - 56 2.26e-06 CAAAACCGAA AGTGATAACCACTACACTATA AAACCCTTTT chrII:326455-327169 + 78 2.26e-06 TAAAGGCGAC GTCTTGAACCACTGGACCATT GG chrX:517655-518112 + 26 2.44e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCACG GCGCTTAACT chrXV:110862-111204 + 25 3.05e-06 GGAAGGGTGG GATGATAACCACTACACTAAC CGCCCGGGTT chrXI:382176-382479 + 80 3.05e-06 CGTCAGTAAC CGTTCCACCCATTCCTCCACG chrVII:779388-779947 - 4 3.05e-06 GGAAGGGTGG GATGATAACCACTACACTAAC CGC chrXI:4-180 + 15 4.64e-06 CACACCCACA CACCACACCCACTACTCTAAC CCTATTCTAA chrXIII:131611-132073 + 79 5.30e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG C chrX:374179-374874 + 76 5.30e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAG chrX:355186-355800 - 18 7.26e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrX:204553-204990 - 19 7.26e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGATTTTT chrVII:531261-532007 - 31 7.26e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGTAA chrII:405699-406298 - 17 7.26e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrIV:1176376-1176687 - 72 1.28e-05 AAAAAAGT GGTTTTAACTACCACGCTATG TCCCTTTTCC chrVIII:34381-36342 + 65 1.49e-05 AGCGTCAATG GTAGAAACCAACTTAGCCAAA GCAGCTTCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCCACTVVGCYAHV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:258989-259442 1e-11 48_[+2]_31 chrXII:167780-168253 1e-11 33_[+2]_46 chrX:523833-524392 1e-11 5_[+2]_74 chrIV:1305420-1305912 1e-11 18_[-2]_61 chrXVI:689347-689850 5.8e-11 21_[-2]_58 chrIV:1150714-1151169 3e-10 24_[+2]_55 chrXII:592323-592816 9.4e-10 74_[+2]_5 chrX:617697-618155 9.4e-10 47_[-2]_32 chrXVI:819038-820012 2.2e-09 58_[-2]_21 chrXIV:602074-602532 2.2e-09 63_[-2]_16 chrXII:734602-734977 2.2e-09 67_[-2]_12 chrV:550933-551823 2.2e-09 4_[+2]_75 chrII:197192-197837 2.2e-09 34_[-2]_45 chrXII:962807-963324 4.6e-09 14_[+2]_65 chrX:424271-424716 4.6e-09 46_[+2]_33 chrIV:519651-519904 4.6e-09 20_[-2]_59 chrXV:353919-354326 5.5e-09 15_[+2]_64 chrXIV:560607-560917 5.5e-09 27_[+2]_52 chrX:58997-59396 5.5e-09 [+2]_79 chrVIII:115841-116410 5.5e-09 78_[+2]_1 chrII:266174-266652 5.5e-09 19_[-2]_60 chrXII:605142-605618 6.5e-09 76_[+2]_3 chrXV:340129-340590 9.2e-09 36_[+2]_43 chrXI:490726-491296 9.2e-09 11_[-2]_68 chrX:233654-234192 9.2e-09 70_[-2]_9 chrV:492204-492576 9.2e-09 58_[+2]_21 chrXVI:856733-857169 1.1e-08 5_[-2]_74 chrXII:656838-657216 1.1e-08 3_[+2]_76 chrIV:409963-410768 1.1e-08 68_[-2]_11 chrVII:115324-115706 1.5e-08 27_[-2]_52 chrIV:359349-359784 1.5e-08 65_[-2]_14 chrXV:228091-228576 2.8e-08 52_[-2]_27 chrIII:127516-127891 2.8e-08 67_[-2]_12 chrXIV:374664-375106 8.3e-08 38_[-2]_41 chrXVI:559991-560502 1.2e-07 67_[+2]_12 chrVIII:358285-358887 1.2e-07 7_[+2]_72 chrII:36241-36596 1.2e-07 34_[-2]_45 chrV:435574-436032 1.9e-07 45_[+2]_34 chrXIV:442786-443265 3e-07 35_[-2]_44 chrVII:205310-205758 3e-07 41_[-2]_38 chrXV:663434-664301 3.7e-07 42_[+2]_37 chrVII:823339-823713 3.7e-07 10_[-2]_69 chrV:469272-469749 3.7e-07 1_[-2]_78 chrXVI:744058-744578 5.6e-07 20_[-2]_59 chrVIII:466645-467298 5.6e-07 73_[-2]_6 chrVII:661488-661983 5.6e-07 68_[-2]_11 chrX:396577-396956 6.1e-07 54_[+2]_25 chrVII:845280-846001 6.1e-07 63_[-2]_16 chrIV:83343-83818 6.1e-07 22_[-2]_57 chrIII:142609-142969 6.1e-07 6_[+2]_73 chrXIII:195943-196301 8.2e-07 72_[+2]_7 chrXII:92346-92731 8.2e-07 64_[-2]_15 chrI:138962-139371 8.2e-07 40_[-2]_39 chrX:422736-423232 8.9e-07 7_[-2]_72 chrX:390814-391345 8.9e-07 60_[+2]_19 chrX:353992-354487 9.8e-07 59_[-2]_20 chrVI:167213-167697 9.8e-07 36_[-2]_43 chrXIV:6619-6944 1.5e-06 43_[+2]_36 chrVIII:556586-556914 1.5e-06 54_[-2]_25 chrXVI:775657-776053 1.6e-06 5_[+2]_74 chrII:642842-643252 1.6e-06 55_[+2]_24 chrIII:74-1060 1.9e-06 29_[+2]_50 chrXIII:808076-808549 2.3e-06 29_[+2]_50 chrXII:448529-448946 2.3e-06 8_[+2]_71 chrXI:302682-303255 2.3e-06 4_[-2]_75 chrVII:878555-879036 2.3e-06 44_[+2]_35 chrVII:287156-287731 2.3e-06 36_[+2]_43 chrV:130814-131422 2.3e-06 59_[+2]_20 chrIV:802548-803004 2.3e-06 50_[+2]_29 chrIII:168087-168550 2.3e-06 78_[+2]_1 chrII:350602-351050 2.3e-06 55_[-2]_24 chrII:326455-327169 2.3e-06 77_[+2]_2 chrX:517655-518112 2.4e-06 25_[+2]_54 chrXV:110862-111204 3e-06 24_[+2]_55 chrXI:382176-382479 3e-06 79_[+2] chrVII:779388-779947 3e-06 3_[-2]_76 chrXI:4-180 4.6e-06 14_[+2]_65 chrXIII:131611-132073 5.3e-06 78_[+2]_1 chrX:374179-374874 5.3e-06 75_[+2]_4 chrX:355186-355800 7.3e-06 17_[-2]_62 chrX:204553-204990 7.3e-06 18_[-2]_61 chrVII:531261-532007 7.3e-06 30_[-2]_49 chrII:405699-406298 7.3e-06 16_[-2]_63 chrIV:1176376-1176687 1.3e-05 71_[-2]_8 chrVIII:34381-36342 1.5e-05 64_[+2]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCCACTVVGCYAHV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCYTWAMCCACTVVGCYAHV width=21 seqs=85 chrXIII:258989-259442 ( 49) CGCCTTAACCACTCGGCCAAG 1 chrXII:167780-168253 ( 34) CGCCTTAACCACTCGGCCAAG 1 chrX:523833-524392 ( 6) CGCCTTAACCACTCGGCCAAG 1 chrIV:1305420-1305912 ( 19) CGCCTTAACCACTCGGCCAAG 1 chrXVI:689347-689850 ( 22) CGCCTTAACCACTCGGCCATA 1 chrIV:1150714-1151169 ( 25) CGCCTTAACCACTCGGCCACT 1 chrXII:592323-592816 ( 75) GCCTTAAACCACTCGGCCAAA 1 chrX:617697-618155 ( 48) GCCTTAAACCACTCGGCCAAA 1 chrXVI:819038-820012 ( 59) GCCTTAACCAACTGGGCCAAG 1 chrXIV:602074-602532 ( 64) GCCTTAACCAACTGGGCCAAG 1 chrXII:734602-734977 ( 68) GCCTTAACCAACTGGGCCAAG 1 chrV:550933-551823 ( 5) GCCTTAACCAACTGGGCCAAG 1 chrII:197192-197837 ( 35) GCCTTAACCAACTGGGCCAAG 1 chrXII:962807-963324 ( 15) GCCTTAGACCACTCGGCCAAC 1 chrX:424271-424716 ( 47) GCCTTAGACCACTCGGCCAAC 1 chrIV:519651-519904 ( 21) GCCTTAGACCACTCGGCCAAC 1 chrXV:353919-354326 ( 16) CGCCTTACCAACTTGGCCATA 1 chrXIV:560607-560917 ( 28) CGCCTTACCAACTTGGCCATA 1 chrX:58997-59396 ( 1) CGCCTTACCAACTTGGCCATA 1 chrVIII:115841-116410 ( 79) CGCCTTACCAACTTGGCCATA 1 chrII:266174-266652 ( 20) CGCCTTACCAACTTGGCCATA 1 chrXII:605142-605618 ( 77) AGCTCTAACCACTGAGCTACA 1 chrXV:340129-340590 ( 37) CGCCGTGACCATTGGGCCACG 1 chrXI:490726-491296 ( 12) CGCCGTGACCATTGGGCCACG 1 chrX:233654-234192 ( 71) CGCCGTGACCATTGGGCCACG 1 chrV:492204-492576 ( 59) CGCCGTGACCATTGGGCCACG 1 chrXVI:856733-857169 ( 6) CGCGCTACCGACTACGCCACA 1 chrXII:656838-657216 ( 4) CGCGCTACCGACTACGCCACA 1 chrIV:409963-410768 ( 69) CGCGCTACCGACTACGCCACA 1 chrVII:115324-115706 ( 28) CGCTCTACCAACTGAGCTAAC 1 chrIV:359349-359784 ( 66) CGCTCTACCAACTGAGCTAAC 1 chrXV:228091-228576 ( 53) GCCTTAACCAACTTGGCCATG 1 chrIII:127516-127891 ( 68) GCCTTAACCAACTTGGCCATG 1 chrXIV:374664-375106 ( 39) CGCTCTCCCAACTGAGCTAAG 1 chrXVI:559991-560502 ( 68) CGCTCTCCCAACTGAGCTAAA 1 chrVIII:358285-358887 ( 8) CGCTCTCCCAACTGAGCTAAA 1 chrII:36241-36596 ( 35) CGCTCTCCCAACTGAGCTAAA 1 chrV:435574-436032 ( 46) CGCGCTACCGATTGCGCCAAC 1 chrXIV:442786-443265 ( 36) GCCTTAGACCGCTCGGCCAAA 1 chrVII:205310-205758 ( 42) GCCTTAGACCGCTCGGCCAAA 1 chrXV:663434-664301 ( 43) GCCATAACCGACTAGACCACG 1 chrVII:823339-823713 ( 11) GCCATAACCGACTAGACCACG 1 chrV:469272-469749 ( 2) GCCATAACCGACTAGACCACG 1 chrXVI:744058-744578 ( 21) ACGCTCTACCACTAAGCTAAG 1 chrVIII:466645-467298 ( 74) ACGCTCTACCACTAAGCTAAG 1 chrVII:661488-661983 ( 69) ACGCTCTACCACTAAGCTAAG 1 chrX:396577-396956 ( 55) GGATTTTACCACTAAACCACT 1 chrVII:845280-846001 ( 64) GGATTTTACCACTAAACCACT 1 chrIV:83343-83818 ( 23) GGATTTTACCACTAAACCACT 1 chrIII:142609-142969 ( 7) GGATTTTACCACTAAACCACT 1 chrXIII:195943-196301 ( 73) GAATCATACCACTAGACCACA 1 chrXII:92346-92731 ( 65) GAATCATACCACTAGACCACA 1 chrI:138962-139371 ( 41) GAATCATACCACTAGACCACA 1 chrX:422736-423232 ( 8) CGCTCTTCCTACTGAGCTACT 1 chrX:390814-391345 ( 61) CGCTCTTCCTACTGAGCTACT 1 chrX:353992-354487 ( 60) CCTTAAACCAACTTGGCTACC 1 chrVI:167213-167697 ( 37) CCTTAAACCAACTTGGCTACC 1 chrXIV:6619-6944 ( 44) ACCCTGCCCCACTCAACCATA 1 chrVIII:556586-556914 ( 55) ACCCTGCCCCACTCAACCATA 1 chrXVI:775657-776053 ( 6) CTGCGCTACCACTGCGCCATA 1 chrII:642842-643252 ( 56) CTGCGCTACCACTGCGCCATA 1 chrIII:74-1060 ( 30) CCCATATCCAACTCCACTACC 1 chrXIII:808076-808549 ( 30) AGTGATAACCACTACACTATA 1 chrXII:448529-448946 ( 9) AGTGATAACCACTACACTATA 1 chrXI:302682-303255 ( 5) AAGCTCTACCATTGAGCCACC 1 chrVII:878555-879036 ( 45) AAGCTCTACCATTGAGCCACC 1 chrVII:287156-287731 ( 37) AAGCTCTACCATTGAGCCACC 1 chrV:130814-131422 ( 60) AGTGATAACCACTACACTATA 1 chrIV:802548-803004 ( 51) AGTGATAACCACTACACTATA 1 chrIII:168087-168550 ( 79) AGTGATAACCACTACACTATA 1 chrII:350602-351050 ( 56) AGTGATAACCACTACACTATA 1 chrII:326455-327169 ( 78) GTCTTGAACCACTGGACCATT 1 chrX:517655-518112 ( 26) GCGCGCTTCCACTGCGCCACG 1 chrXV:110862-111204 ( 25) GATGATAACCACTACACTAAC 1 chrXI:382176-382479 ( 80) CGTTCCACCCATTCCTCCACG 1 chrVII:779388-779947 ( 4) GATGATAACCACTACACTAAC 1 chrXI:4-180 ( 15) CACCACACCCACTACTCTAAC 1 chrXIII:131611-132073 ( 79) ACGCGTTGCCATTACGCCACG 1 chrX:374179-374874 ( 76) ACGCGTTGCCATTACGCCACG 1 chrX:355186-355800 ( 18) CATTCTGACCATTAAACTATC 1 chrX:204553-204990 ( 19) CATTCTGACCATTAAACTATC 1 chrVII:531261-532007 ( 31) CATTCTGACCATTAAACTATC 1 chrII:405699-406298 ( 17) CATTCTGACCATTAAACTATC 1 chrIV:1176376-1176687 ( 72) GGTTTTAACTACCACGCTATG 1 chrVIII:34381-36342 ( 65) GTAGAAACCAACTTAGCCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCCACTVVGCYAHV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 41680 bayes= 9.25301 E= 1.7e-151 -62 122 88 -1305 -101 78 130 -271 -171 162 -57 -71 -271 83 -33 57 -113 37 -86 71 -13 -57 -244 84 78 -144 -33 -32 84 110 -303 -471 -1305 238 -1305 -1305 -25 170 -122 -313 166 -1305 -303 -1305 -1305 210 -1305 -80 -1305 -402 -1305 168 29 6 67 -139 -1 37 122 -1305 -1 -1305 181 -371 -1305 238 -1305 -1305 -1305 178 -1305 15 170 -1305 -1305 -1305 20 93 -1305 -13 24 22 73 -171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCCACTVVGCYAHV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 85 E= 1.7e-151 0.200000 0.447059 0.352941 0.000000 0.152941 0.329412 0.470588 0.047059 0.094118 0.588235 0.129412 0.188235 0.047059 0.341176 0.152941 0.458824 0.141176 0.247059 0.105882 0.505882 0.282353 0.129412 0.035294 0.552941 0.529412 0.070588 0.152941 0.247059 0.552941 0.411765 0.023529 0.011765 0.000000 1.000000 0.000000 0.000000 0.258824 0.623529 0.082353 0.035294 0.976471 0.000000 0.023529 0.000000 0.000000 0.823529 0.000000 0.176471 0.000000 0.011765 0.000000 0.988235 0.376471 0.200000 0.305882 0.117647 0.305882 0.247059 0.447059 0.000000 0.305882 0.000000 0.670588 0.023529 0.000000 1.000000 0.000000 0.000000 0.000000 0.658824 0.000000 0.341176 1.000000 0.000000 0.000000 0.000000 0.352941 0.364706 0.000000 0.282353 0.364706 0.223529 0.317647 0.094118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCCACTVVGCYAHV MEME-2 regular expression -------------------------------------------------------------------------------- [CGA][GC]C[TC][TC][TA][AT][AC]C[CA]ACT[AGC][GAC][GA]C[CT]A[CAT][AGC] -------------------------------------------------------------------------------- Time 503.75 secs. ******************************************************************************** ******************************************************************************** MOTIF TGWGRTGTAYGGRTGYR MEME-3 width = 17 sites = 59 llr = 709 E-value = 1.7e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGWGRTGTAYGGRTGYR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 22334:::71::4::14 pos.-specific C 111::::313:::1:31 probability G 1526519:3:aa6:813 matrix T 62411917:6:::9252 bits 2.4 ** 2.1 ** 1.9 * ** 1.7 * ** Relative 1.4 * ** ** Entropy 1.2 ** ***** (17.3 bits) 1.0 * *** ***** 0.7 ************ 0.5 * ************* 0.2 ** ************** 0.0 ----------------- Multilevel TGTGGTGTATGGGTGTA consensus TAAA CGC A CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGRTGTAYGGRTGYR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------- chrXV:639119-639486 + 62 1.97e-10 CGGTTGTATG TGTGGTGTACGGGTGTA AAAGTAGTCA chrXIII:5445-5662 - 39 5.66e-10 TGGGTGTGGG TGTGGTGTGTGGGTGTG GGTGTATATA chrXI:666621-666791 + 35 5.66e-10 GGTGTGTGGG TGTGGTGTGTGGGTGTG TGGTGTGTGG chrVIII:562317-562592 + 59 5.66e-10 AAAGTGTGGG TGTGGTGTGTGGGTGTG GGTGTGTGTG chrIV:15-242 - 39 5.66e-10 TGGGTGTGGG TGTGGTGTGTGGGTGTG GGTGTGGTGT chrX:690590-690864 - 37 3.30e-09 TAACGCACAT GGTGGTGTACGGGTGTG TTGATGACCA chrXVI:279981-280237 - 54 1.21e-08 TTCGGAATTG TGAGGTGCACGGATGCG GACTTCTCCT chrXII:710595-710882 - 44 1.21e-08 TAACGCAAAA TGAGATGCGTGGGTGTG ATTCCTGCTT chrIII:163456-163903 + 15 2.78e-08 ACAGCCGCGG TTGGGTGCGTGGGTGCG GTAATTTAAC chrXIV:783724-784321 + 62 8.54e-08 GTAGTGTTAG GGTAGTGTGTGGGTGTG GTGTGTGTGG chrI:81854-82362 + 49 9.85e-08 CTCATCTAGC GGAGGTGCACGGATGTA CCAACAGTTT chrII:181310-181689 - 45 1.13e-07 ATGTATTCAA TGTAATGTATGGGTGCT TTGTAAAGGG chrXV:968119-968495 + 9 1.47e-07 CAAAAGCG TGGGGTGCGTGGGCGTG CGCTGCTCGA chrXI:382176-382479 - 27 1.47e-07 TTGTGTTGGG TGTGATGTCCGGATGCA ACAGCAGCAA chrX:545430-545734 + 22 1.69e-07 CACGTGCGAG TGCGGTGCATGGGTGGC TGTCTTTTCG chrVIII:505800-506228 + 34 2.20e-07 AATGTCTGGG TGAAATGTATGGATGCA TAATTGTCTC chrXII:903403-903694 - 23 3.65e-07 TCCTAATGCA TGTGGTGCATGGGTCCA ATGCTTCTAT chrVIII:125889-126320 - 47 3.65e-07 ATGTAAAGAT GTAGGTGTACGGATGCA TTAACGTCTT chrIX:254088-254580 + 71 4.61e-07 GCGCGGCAAT TAGAATGTGTGGGTGCG GAAGCTCGCC chrXII:370637-370874 + 78 5.74e-07 GGACTAACCG TGTGGTTCATGGGTGGG CGAAGT chrVII:726341-726781 - 75 5.74e-07 ATGGGTGTA TATAGGGTATGGGTGTA CAGTTAATTT chrIX:68252-68503 - 22 6.40e-07 CATACATCTT AGTAATGTACGGATGTA ATAAACTCAA chrX:607899-608158 - 17 7.14e-07 ATGGGTTAAA TAGGATGTATGGATGGA GGGTTGGCAT chrXII:1028179-1028609 - 53 8.88e-07 ACCCATACAT TTTGGTGCATGGGTGAT ATTTTGTCTT chrXIII:549883-553200 + 34 1.10e-06 TTTAAAAACT ATAAATGTATGGGTGCG TAATGTACAG chrII:592686-593498 + 40 1.10e-06 TATGGAGTTC AAAGATGTATGGATGCA AGAAAAGAGG chrII:44938-45361 - 70 1.10e-06 CAAACATACA TAGAATGTACGGATGCA TGATTGTCTC chrXVI:280568-282976 - 43 1.22e-06 AGTAATCAAA GGAAGTGTAAGGGTGTA AAGAGGTAAG chrXI:431363-431675 - 24 1.22e-06 AAGATGTAAA AATTGTGTATGGGTGTA TTTGCGCTGT chrIV:1355720-1356009 + 22 1.22e-06 AAAAAATACT ATAAATGTATGGGTGTA ATTTTAACCG chrX:391801-392199 - 43 1.35e-06 GCCCGCTCGC AGGGAGGTCTGGGTGTG GGGCGTGTGC chrXIII:302796-303132 + 48 1.80e-06 AATCCAGGGG TGTGGGGTGTGGGCGCC CATATGCGCG chrXIV:330756-331118 - 62 1.97e-06 AGGTTTTACT TTAGATGTAAGGATGTA AGATATCTGA chrXI:67795-68045 - 42 1.97e-06 GAAAATTTGA TGCGGTGCACGGATTTC AGCACGGGTT chrXV:168081-168394 - 19 2.17e-06 TCGTTCTCAA TGTGATGTGTGGGCGGC TTTGAATACC chrXII:932067-932512 + 33 2.17e-06 GTACAGATGT ACGGATGTACGGATGTA TACTATGTAA chrXII:521752-522907 - 23 2.17e-06 TTGGAAAACC TTTTGTGTACGGATGTT TAGTTAATAA chrV:396178-396595 - 42 2.17e-06 TTGGGTTCAC AAAAGTGTACGGATGTA TACAACAGGG chrXII:241631-242030 - 26 2.37e-06 GGTTTACATT TTATATGTACGGATGTA AAAAGGGAAA chrXVI:699679-700656 - 16 2.60e-06 GGGGATTGGG TGTGATGTAAGGATTCG CGGTCCTCGA chrXV:79732-80142 + 58 2.60e-06 GTCACTTATT TAATATGTACGGGTGTT TACATGGAGT chrXVI:135437-135841 + 34 3.12e-06 GCATACTTTA CGGGGTGCACGGATTTT AGCAGTCTTT chrXV:901428-901651 + 48 3.40e-06 GTCGGAAACG TAAAATGTACGGGTGAA CAGTCCCGAA chrXI:618765-619273 + 39 3.71e-06 CACAAATCTA TTAGAGGCACGGATGGA AATAGTATTT chrII:165055-165443 - 57 4.04e-06 AGTGCTCTAA CGCGGTGTATGGGTTAG ATTCGTAATA chrXV:1025713-1026000 - 69 4.77e-06 TCCAATTACA CGTGATGAATGGGTGTT CAGCATATGT chrXIV:763970-764268 + 73 5.60e-06 AATCAGGGTC CTGAGTGTCTGGGTGCT GTCTACGTTA chrXV:216279-216700 - 35 6.57e-06 GTTACCTGGG GGCGGTGCCTGGGTTGA GGAAGGCGCG chrIV:321633-321955 - 54 7.10e-06 AAAAATAAAG ATTGGTGTACGGAGGTA AAGGTATGAA chrXV:866216-867276 + 57 8.28e-06 CAAGCATTCT GGGTTTGTATGGGTGTT ACACCGGTTT chrIV:1400934-1401953 - 39 8.93e-06 AAAAAGGGTA ATATATGTGTGGGTGGA AAATGATTGG chrIV:1013694-1013977 - 57 8.93e-06 ATGCAATGGG TGTGGGCTCTGGGTGCC CTTTAACCAC chrV:362158-362486 - 77 9.61e-06 ATTGAAA TATATTGTATGGGTTTA AATTTCTTGG chrIV:1300840-1301344 - 66 9.61e-06 CCCAAACATC CACAGTGCACGGATGTT TGAAGGAAAA chrI:181123-181486 + 74 9.61e-06 CCAATGAGGG TGTGTTTCGTGGATGCA TATACTCTGA chrXII:592323-592816 - 16 1.11e-05 TCTGATATCT TCGGATGCAAGGGTTCG AATCCCTTAG chrXIV:241382-241867 - 25 1.37e-05 TTTACTACCT TTTGGGCTATGGGTTTG TTTTGTTTAA chrIX:248576-248992 + 41 1.68e-05 ATCATTACAC CGCGAGTCGTGGGTGCA TTGTAGTTTA chrXIII:296718-298885 - 59 2.62e-05 TTACAATGGA TCAGTTGCGCGGGTTTT CTAGGCCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGRTGTAYGGRTGYR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639119-639486 2e-10 61_[+3]_22 chrXIII:5445-5662 5.7e-10 38_[-3]_45 chrXI:666621-666791 5.7e-10 34_[+3]_49 chrVIII:562317-562592 5.7e-10 58_[+3]_25 chrIV:15-242 5.7e-10 38_[-3]_45 chrX:690590-690864 3.3e-09 36_[-3]_47 chrXVI:279981-280237 1.2e-08 53_[-3]_30 chrXII:710595-710882 1.2e-08 43_[-3]_40 chrIII:163456-163903 2.8e-08 14_[+3]_69 chrXIV:783724-784321 8.5e-08 61_[+3]_22 chrI:81854-82362 9.8e-08 48_[+3]_35 chrII:181310-181689 1.1e-07 44_[-3]_39 chrXV:968119-968495 1.5e-07 8_[+3]_75 chrXI:382176-382479 1.5e-07 26_[-3]_57 chrX:545430-545734 1.7e-07 21_[+3]_62 chrVIII:505800-506228 2.2e-07 33_[+3]_50 chrXII:903403-903694 3.7e-07 22_[-3]_61 chrVIII:125889-126320 3.7e-07 46_[-3]_37 chrIX:254088-254580 4.6e-07 70_[+3]_13 chrXII:370637-370874 5.7e-07 77_[+3]_6 chrVII:726341-726781 5.7e-07 74_[-3]_9 chrIX:68252-68503 6.4e-07 21_[-3]_62 chrX:607899-608158 7.1e-07 16_[-3]_67 chrXII:1028179-1028609 8.9e-07 52_[-3]_31 chrXIII:549883-553200 1.1e-06 33_[+3]_50 chrII:592686-593498 1.1e-06 39_[+3]_44 chrII:44938-45361 1.1e-06 69_[-3]_14 chrXVI:280568-282976 1.2e-06 42_[-3]_41 chrXI:431363-431675 1.2e-06 23_[-3]_60 chrIV:1355720-1356009 1.2e-06 21_[+3]_62 chrX:391801-392199 1.3e-06 42_[-3]_41 chrXIII:302796-303132 1.8e-06 47_[+3]_36 chrXIV:330756-331118 2e-06 61_[-3]_22 chrXI:67795-68045 2e-06 41_[-3]_42 chrXV:168081-168394 2.2e-06 18_[-3]_65 chrXII:932067-932512 2.2e-06 32_[+3]_51 chrXII:521752-522907 2.2e-06 22_[-3]_61 chrV:396178-396595 2.2e-06 41_[-3]_42 chrXII:241631-242030 2.4e-06 25_[-3]_58 chrXVI:699679-700656 2.6e-06 15_[-3]_68 chrXV:79732-80142 2.6e-06 57_[+3]_26 chrXVI:135437-135841 3.1e-06 33_[+3]_50 chrXV:901428-901651 3.4e-06 47_[+3]_36 chrXI:618765-619273 3.7e-06 38_[+3]_45 chrII:165055-165443 4e-06 56_[-3]_27 chrXV:1025713-1026000 4.8e-06 68_[-3]_15 chrXIV:763970-764268 5.6e-06 72_[+3]_11 chrXV:216279-216700 6.6e-06 34_[-3]_49 chrIV:321633-321955 7.1e-06 53_[-3]_30 chrXV:866216-867276 8.3e-06 56_[+3]_27 chrIV:1400934-1401953 8.9e-06 38_[-3]_45 chrIV:1013694-1013977 8.9e-06 56_[-3]_27 chrV:362158-362486 9.6e-06 76_[-3]_7 chrIV:1300840-1301344 9.6e-06 65_[-3]_18 chrI:181123-181486 9.6e-06 73_[+3]_10 chrXII:592323-592816 1.1e-05 15_[-3]_68 chrXIV:241382-241867 1.4e-05 24_[-3]_59 chrIX:248576-248992 1.7e-05 40_[+3]_43 chrXIII:296718-298885 2.6e-05 58_[-3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGRTGTAYGGRTGYR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGWGRTGTAYGGRTGYR width=17 seqs=59 chrXV:639119-639486 ( 62) TGTGGTGTACGGGTGTA 1 chrXIII:5445-5662 ( 39) TGTGGTGTGTGGGTGTG 1 chrXI:666621-666791 ( 35) TGTGGTGTGTGGGTGTG 1 chrVIII:562317-562592 ( 59) TGTGGTGTGTGGGTGTG 1 chrIV:15-242 ( 39) TGTGGTGTGTGGGTGTG 1 chrX:690590-690864 ( 37) GGTGGTGTACGGGTGTG 1 chrXVI:279981-280237 ( 54) TGAGGTGCACGGATGCG 1 chrXII:710595-710882 ( 44) TGAGATGCGTGGGTGTG 1 chrIII:163456-163903 ( 15) TTGGGTGCGTGGGTGCG 1 chrXIV:783724-784321 ( 62) GGTAGTGTGTGGGTGTG 1 chrI:81854-82362 ( 49) GGAGGTGCACGGATGTA 1 chrII:181310-181689 ( 45) TGTAATGTATGGGTGCT 1 chrXV:968119-968495 ( 9) TGGGGTGCGTGGGCGTG 1 chrXI:382176-382479 ( 27) TGTGATGTCCGGATGCA 1 chrX:545430-545734 ( 22) TGCGGTGCATGGGTGGC 1 chrVIII:505800-506228 ( 34) TGAAATGTATGGATGCA 1 chrXII:903403-903694 ( 23) TGTGGTGCATGGGTCCA 1 chrVIII:125889-126320 ( 47) GTAGGTGTACGGATGCA 1 chrIX:254088-254580 ( 71) TAGAATGTGTGGGTGCG 1 chrXII:370637-370874 ( 78) TGTGGTTCATGGGTGGG 1 chrVII:726341-726781 ( 75) TATAGGGTATGGGTGTA 1 chrIX:68252-68503 ( 22) AGTAATGTACGGATGTA 1 chrX:607899-608158 ( 17) TAGGATGTATGGATGGA 1 chrXII:1028179-1028609 ( 53) TTTGGTGCATGGGTGAT 1 chrXIII:549883-553200 ( 34) ATAAATGTATGGGTGCG 1 chrII:592686-593498 ( 40) AAAGATGTATGGATGCA 1 chrII:44938-45361 ( 70) TAGAATGTACGGATGCA 1 chrXVI:280568-282976 ( 43) GGAAGTGTAAGGGTGTA 1 chrXI:431363-431675 ( 24) AATTGTGTATGGGTGTA 1 chrIV:1355720-1356009 ( 22) ATAAATGTATGGGTGTA 1 chrX:391801-392199 ( 43) AGGGAGGTCTGGGTGTG 1 chrXIII:302796-303132 ( 48) TGTGGGGTGTGGGCGCC 1 chrXIV:330756-331118 ( 62) TTAGATGTAAGGATGTA 1 chrXI:67795-68045 ( 42) TGCGGTGCACGGATTTC 1 chrXV:168081-168394 ( 19) TGTGATGTGTGGGCGGC 1 chrXII:932067-932512 ( 33) ACGGATGTACGGATGTA 1 chrXII:521752-522907 ( 23) TTTTGTGTACGGATGTT 1 chrV:396178-396595 ( 42) AAAAGTGTACGGATGTA 1 chrXII:241631-242030 ( 26) TTATATGTACGGATGTA 1 chrXVI:699679-700656 ( 16) TGTGATGTAAGGATTCG 1 chrXV:79732-80142 ( 58) TAATATGTACGGGTGTT 1 chrXVI:135437-135841 ( 34) CGGGGTGCACGGATTTT 1 chrXV:901428-901651 ( 48) TAAAATGTACGGGTGAA 1 chrXI:618765-619273 ( 39) TTAGAGGCACGGATGGA 1 chrII:165055-165443 ( 57) CGCGGTGTATGGGTTAG 1 chrXV:1025713-1026000 ( 69) CGTGATGAATGGGTGTT 1 chrXIV:763970-764268 ( 73) CTGAGTGTCTGGGTGCT 1 chrXV:216279-216700 ( 35) GGCGGTGCCTGGGTTGA 1 chrIV:321633-321955 ( 54) ATTGGTGTACGGAGGTA 1 chrXV:866216-867276 ( 57) GGGTTTGTATGGGTGTT 1 chrIV:1400934-1401953 ( 39) ATATATGTGTGGGTGGA 1 chrIV:1013694-1013977 ( 57) TGTGGGCTCTGGGTGCC 1 chrV:362158-362486 ( 77) TATATTGTATGGGTTTA 1 chrIV:1300840-1301344 ( 66) CACAGTGCACGGATGTT 1 chrI:181123-181486 ( 74) TGTGTTTCGTGGATGCA 1 chrXII:592323-592816 ( 16) TCGGATGCAAGGGTTCG 1 chrXIV:241382-241867 ( 25) TTTGGGCTATGGGTTTG 1 chrIX:248576-248992 ( 41) CGCGAGTCGTGGGTGCA 1 chrXIII:296718-298885 ( 59) TCAGTTGCGCGGGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGRTGTAYGGRTGYR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 17 n= 43764 bayes= 10.1913 E= 1.7e-054 -86 -91 -69 98 -73 -191 150 -48 -10 -91 -4 46 -28 -1253 175 -160 40 -1253 145 -218 -1253 -1253 -69 152 -1253 -250 226 -260 -418 67 -1253 114 110 -118 41 -1253 -218 82 -1253 94 -1253 -1253 238 -1253 -1253 -1253 238 -1253 21 -1253 175 -1253 -1253 -191 -350 160 -1253 -350 211 -101 -260 67 -69 77 52 -118 67 -86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGRTGTAYGGRTGYR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 17 nsites= 59 E= 1.7e-054 0.169492 0.101695 0.118644 0.610169 0.186441 0.050847 0.542373 0.220339 0.288136 0.101695 0.186441 0.423729 0.254237 0.000000 0.644068 0.101695 0.406780 0.000000 0.525424 0.067797 0.000000 0.000000 0.118644 0.881356 0.000000 0.033898 0.915254 0.050847 0.016949 0.305085 0.000000 0.677966 0.661017 0.084746 0.254237 0.000000 0.067797 0.338983 0.000000 0.593220 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.355932 0.000000 0.644068 0.000000 0.000000 0.050847 0.016949 0.932203 0.000000 0.016949 0.830508 0.152542 0.050847 0.305085 0.118644 0.525424 0.440678 0.084746 0.305085 0.169492 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGRTGTAYGGRTGYR MEME-3 regular expression -------------------------------------------------------------------------------- T[GT][TA][GA][GA]TG[TC][AG][TC]GG[GA]TG[TC][AG] -------------------------------------------------------------------------------- Time 733.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71807-73250 4.20e-01 100 chrI:81854-82362 1.49e-04 48_[+3(9.85e-08)]_35 chrI:138962-139371 6.65e-05 40_[-2(8.16e-07)]_39 chrI:166170-166811 2.71e-01 100 chrI:181123-181486 2.02e-02 73_[+3(9.61e-06)]_10 chrI:182176-183167 7.79e-01 100 chrII:9457-10173 4.98e-01 100 chrII:36241-36596 2.49e-04 34_[-2(1.20e-07)]_45 chrII:44938-45361 3.44e-03 69_[-3(1.10e-06)]_14 chrII:59825-61257 9.91e-01 100 chrII:87959-88556 7.39e-01 100 chrII:89662-90404 3.28e-01 100 chrII:159320-160175 5.53e-01 100 chrII:165055-165443 2.38e-03 32_[-3(8.47e-05)]_7_[-3(4.04e-06)]_\ 27 chrII:167580-169721 6.73e-01 100 chrII:181310-181689 1.15e-03 44_[-3(1.13e-07)]_39 chrII:181864-182083 8.96e-01 100 chrII:197192-197837 2.93e-07 34_[-2(2.15e-09)]_8_[+1(4.83e-05)]_\ 8 chrII:226969-227374 4.23e-05 12_[-1(5.43e-09)]_59 chrII:266174-266652 6.36e-12 19_[-2(5.48e-09)]_24_[-1(1.58e-10)]_\ 7 chrII:326455-327169 5.75e-08 23_[+1(4.96e-09)]_25_[+2(2.26e-06)]_\ 2 chrII:332303-332918 5.97e-01 100 chrII:347414-348011 1.21e-03 1_[-1(3.99e-07)]_70 chrII:350602-351050 9.36e-05 55_[-2(2.26e-06)]_24 chrII:393374-394755 2.65e-01 100 chrII:405699-406298 3.46e-10 16_[-2(7.26e-06)]_23_[-1(1.13e-11)]_\ 11 chrII:415508-415961 9.35e-01 100 chrII:477032-477729 5.09e-01 100 chrII:504538-504852 9.65e-01 100 chrII:592686-593498 2.27e-03 22_[+3(5.74e-05)]_[+3(1.10e-06)]_44 chrII:604045-607135 7.07e-01 100 chrII:642842-643252 4.72e-08 3_[+1(7.74e-09)]_23_[+2(1.64e-06)]_\ 24 chrII:644919-645419 4.62e-01 100 chrII:680385-682513 8.90e-01 100 chrIII:74-1060 3.23e-03 29_[+2(1.93e-06)]_50 chrIII:75004-75711 7.96e-01 100 chrIII:78490-78886 7.18e-01 100 chrIII:81754-82651 8.08e-01 100 chrIII:90850-91161 4.46e-01 100 chrIII:123303-123818 2.29e-06 60_[+1(7.74e-09)]_11 chrIII:127516-127891 6.15e-05 67_[-2(2.75e-08)]_12 chrIII:142609-142969 2.52e-03 6_[+2(6.15e-07)]_73 chrIII:149522-150195 4.33e-01 100 chrIII:150956-151517 5.81e-01 100 chrIII:161929-162376 8.11e-02 100 chrIII:163456-163903 9.28e-05 14_[+3(2.78e-08)]_13_[+3(1.57e-05)]_\ 39 chrIII:168087-168550 6.77e-12 26_[+1(9.74e-12)]_23_[+2(2.26e-06)]_\ 1 chrIII:177130-178779 8.14e-01 100 chrIII:227778-228508 2.36e-01 100 chrIII:260325-262358 3.47e-01 100 chrIII:262728-263153 9.96e-01 100 chrIII:295299-295979 6.18e-01 100 chrIII:315615-316040 9.18e-01 100 chrIV:15-242 2.09e-06 21_[-3(1.80e-06)]_[-3(5.66e-10)]_2_\ [-3(5.66e-10)]_26 chrIV:83343-83818 1.12e-10 22_[-2(6.15e-07)]_22_[-1(5.82e-11)]_\ 6 chrIV:117147-118210 9.51e-01 100 chrIV:129264-131017 7.28e-01 100 chrIV:216207-216868 9.77e-01 100 chrIV:217045-218082 6.51e-01 100 chrIV:218304-218700 9.69e-01 100 chrIV:221653-222970 4.25e-01 100 chrIV:229266-230524 8.16e-01 100 chrIV:306687-309398 8.46e-01 100 chrIV:321633-321955 1.67e-02 53_[-3(7.10e-06)]_9_[-3(7.72e-05)]_\ 4 chrIV:340608-341923 8.21e-01 100 chrIV:357832-358522 7.98e-01 100 chrIV:359349-359784 2.20e-05 65_[-2(1.50e-08)]_14 chrIV:392608-392854 4.20e-01 100 chrIV:409963-410768 3.70e-05 68_[-2(1.08e-08)]_11 chrIV:411036-411674 9.83e-01 100 chrIV:433917-434938 9.87e-01 100 chrIV:437553-438156 2.00e-05 26_[-1(2.64e-08)]_45 chrIV:465282-465605 2.01e-01 100 chrIV:488376-489080 6.37e-01 100 chrIV:489928-491260 1.56e-01 100 chrIV:491439-492662 1.98e-01 100 chrIV:519651-519904 1.22e-07 20_[-2(4.58e-09)]_18_[+1(5.31e-05)]_\ 12 chrIV:520660-521457 1.94e-05 12_[-1(1.05e-09)]_59 chrIV:538841-539249 1.26e-01 100 chrIV:568705-569342 2.82e-07 39_[-1(4.48e-11)]_32 chrIV:578953-580681 4.05e-01 100 chrIV:600753-601930 1.13e-01 100 chrIV:619704-620190 1.64e-06 65_[+1(7.67e-10)]_6 chrIV:644913-645367 6.09e-07 56_[+1(9.66e-11)]_15 chrIV:667736-668255 4.50e-08 55_[+1(2.62e-11)]_16 chrIV:727438-727945 4.22e-01 100 chrIV:757506-758219 7.22e-01 100 chrIV:802548-803004 1.04e-05 15_[-1(5.31e-05)]_6_[+2(2.26e-06)]_\ 29 chrIV:835737-837924 1.78e-01 100 chrIV:884257-885645 7.52e-01 100 chrIV:946145-946635 1.42e-04 37_[-1(2.85e-08)]_34 chrIV:980737-981157 5.40e-05 70_[+1(5.43e-09)]_1 chrIV:992719-993429 8.49e-02 100 chrIV:1013694-1013977 1.46e-02 56_[-3(8.93e-06)]_27 chrIV:1016952-1017521 4.28e-08 14_[+1(2.62e-11)]_57 chrIV:1075124-1075761 7.28e-02 100 chrIV:1094711-1095659 3.81e-01 100 chrIV:1150714-1151169 1.08e-06 24_[+2(2.97e-10)]_55 chrIV:1175742-1176113 1.70e-07 1_[-1(2.25e-10)]_70 chrIV:1176376-1176687 9.36e-03 71_[-2(1.28e-05)]_8 chrIV:1201507-1202114 1.76e-05 39_[-1(5.14e-08)]_32 chrIV:1256698-1257294 1.29e-11 55_[+1(7.93e-14)]_16 chrIV:1300840-1301344 9.97e-03 65_[-3(9.61e-06)]_18 chrIV:1305420-1305912 1.10e-08 18_[-2(1.04e-11)]_61 chrIV:1352149-1353067 9.60e-01 100 chrIV:1355720-1356009 4.19e-03 21_[+3(1.22e-06)]_7_[+3(1.47e-05)]_\ 38 chrIV:1359200-1360815 3.57e-01 100 chrIV:1400934-1401953 1.83e-02 38_[-3(8.93e-06)]_45 chrIV:1450646-1451646 9.94e-01 100 chrIV:1461349-1461850 2.49e-01 100 chrIV:1501605-1502774 9.01e-01 100 chrIX:68252-68503 3.59e-03 21_[-3(6.40e-07)]_62 chrIX:99619-100051 1.99e-01 100 chrIX:174156-175580 6.17e-01 100 chrIX:182919-183710 8.87e-01 100 chrIX:197363-197743 9.80e-01 100 chrIX:210656-210925 5.43e-01 100 chrIX:248576-248992 2.25e-02 40_[+3(1.68e-05)]_43 chrIX:254088-254580 1.01e-03 70_[+3(4.61e-07)]_13 chrIX:257366-258081 8.15e-02 100 chrIX:299974-300473 4.00e-08 48_[+1(8.52e-11)]_23 chrIX:315621-318399 9.05e-01 100 chrIX:323998-324385 3.64e-01 100 chrIX:325738-326348 6.82e-01 100 chrIX:336095-336627 8.03e-08 31_[+1(1.13e-11)]_40 chrIX:370217-370612 2.75e-01 100 chrIX:391106-392507 1.17e-01 100 chrV:53512-54267 8.32e-01 100 chrV:61055-62161 5.19e-01 100 chrV:67127-69494 7.89e-01 100 chrV:85104-87093 5.77e-02 100 chrV:99855-100324 2.41e-01 100 chrV:117146-118298 2.03e-01 100 chrV:130814-131422 4.87e-10 7_[+1(9.66e-11)]_23_[+2(2.26e-06)]_\ 20 chrV:135150-136187 2.04e-01 100 chrV:138453-139972 5.09e-01 100 chrV:140201-140923 3.70e-01 100 chrV:176856-177480 3.58e-06 29_[-1(3.56e-10)]_42 chrV:207354-208190 9.47e-01 100 chrV:249786-250538 8.15e-02 100 chrV:270018-271106 1.83e-01 100 chrV:288140-288790 9.52e-06 21_[+1(3.77e-09)]_50 chrV:305814-306932 9.07e-01 100 chrV:311690-312304 3.97e-04 69_[+1(7.81e-08)]_2 chrV:354664-355530 1.87e-01 100 chrV:362158-362486 1.77e-02 76_[-3(9.61e-06)]_7 chrV:396178-396595 5.67e-03 41_[-3(2.17e-06)]_42 chrV:423066-424338 1.81e-01 100 chrV:431023-431940 6.97e-01 100 chrV:434385-434980 9.67e-01 100 chrV:435574-436032 3.41e-05 45_[+2(1.93e-07)]_34 chrV:438309-438973 9.58e-01 100 chrV:441778-442693 6.02e-01 100 chrV:442994-443363 1.53e-08 67_[+1(9.74e-12)]_4 chrV:469272-469749 2.00e-10 1_[-2(3.72e-07)]_25_[-1(9.66e-11)]_\ 24 chrV:486921-487602 5.39e-01 100 chrV:492204-492576 1.49e-09 5_[+1(3.08e-08)]_24_[+2(9.18e-09)]_\ 21 chrV:550933-551823 1.77e-05 4_[+2(2.15e-09)]_75 chrVI:64130-65589 9.58e-01 100 chrVI:82580-83851 6.68e-02 100 chrVI:95468-95897 4.95e-05 [+3(2.20e-07)]_83 chrVI:101039-101921 1.84e-07 25_[-1(2.83e-10)]_46 chrVI:136972-137704 9.36e-01 100 chrVI:157844-158234 8.31e-01 100 chrVI:162041-162581 2.04e-07 14_[-1(1.99e-11)]_57 chrVI:163059-163275 1.53e-01 100 chrVI:167213-167697 5.40e-03 36_[-2(9.79e-07)]_43 chrVI:180628-181280 2.85e-06 63_[+1(1.58e-10)]_8 chrVI:190906-191781 6.42e-01 100 chrVI:210446-211108 9.89e-01 100 chrVI:220808-222432 5.10e-02 100 chrVI:223223-224158 1.30e-01 100 chrVI:226673-227284 3.11e-01 100 chrVII:280-1756 9.77e-01 100 chrVII:110101-110786 2.51e-01 100 chrVII:115324-115706 3.25e-05 27_[-2(1.50e-08)]_52 chrVII:121903-122977 6.34e-01 100 chrVII:148216-149558 8.96e-01 100 chrVII:185357-185917 1.92e-01 100 chrVII:205310-205758 1.96e-03 41_[-2(3.01e-07)]_38 chrVII:254127-254696 8.71e-01 100 chrVII:255199-255367 4.35e-01 100 chrVII:277022-278696 3.52e-01 100 chrVII:287156-287731 1.98e-03 36_[+2(2.26e-06)]_43 chrVII:310489-312948 7.67e-03 30_[-2(7.91e-05)]_49 chrVII:319248-320158 7.79e-01 100 chrVII:328379-328945 4.77e-08 19_[-1(1.30e-11)]_52 chrVII:345906-346706 5.51e-01 100 chrVII:364910-366616 9.81e-01 100 chrVII:370931-371580 3.34e-01 100 chrVII:401432-401619 4.82e-07 45_[+1(5.11e-11)]_26 chrVII:405464-405864 9.81e-01 100 chrVII:411993-412591 1.58e-05 45_[+1(1.93e-09)]_26 chrVII:422890-423484 5.40e-05 45_[-1(3.57e-08)]_26 chrVII:438545-439882 4.96e-01 100 chrVII:440520-442632 4.78e-01 100 chrVII:479165-482692 1.36e-01 100 chrVII:531261-532007 3.07e-03 30_[-2(7.26e-06)]_49 chrVII:533469-535200 5.48e-01 100 chrVII:541714-542171 2.01e-05 6_[-1(1.93e-09)]_65 chrVII:544111-544860 8.89e-01 100 chrVII:555128-556688 2.37e-01 100 chrVII:561434-561729 9.75e-01 100 chrVII:648772-649388 9.55e-01 100 chrVII:661488-661983 4.83e-04 68_[-2(5.58e-07)]_11 chrVII:700428-701239 5.52e-01 100 chrVII:706923-707186 8.99e-01 100 chrVII:726341-726781 3.29e-03 74_[-3(5.74e-07)]_9 chrVII:730966-731432 4.01e-07 38_[-1(1.58e-10)]_33 chrVII:736174-736651 1.39e-06 26_[-1(7.67e-10)]_45 chrVII:738871-739630 7.93e-01 100 chrVII:774147-774750 9.64e-06 [-1(7.67e-10)]_71 chrVII:779388-779947 2.19e-08 3_[-2(3.05e-06)]_23_[-1(1.19e-08)]_\ 24 chrVII:787395-788750 4.34e-01 100 chrVII:794020-794566 7.12e-01 100 chrVII:823339-823713 2.00e-10 10_[-2(3.72e-07)]_25_[-1(9.66e-11)]_\ 15 chrVII:828370-828979 5.05e-01 100 chrVII:845280-846001 7.92e-04 63_[-2(6.15e-07)]_16 chrVII:856733-857948 9.96e-01 100 chrVII:876121-878090 2.41e-01 100 chrVII:878555-879036 1.84e-03 44_[+2(2.26e-06)]_35 chrVII:882785-883820 8.93e-02 100 chrVII:930749-931646 8.92e-01 100 chrVII:972044-973919 9.08e-01 100 chrVII:1000343-1000606 1.21e-01 100 chrVII:1003959-1004416 3.31e-01 100 chrVIII:34381-36342 6.83e-03 64_[+2(1.49e-05)]_15 chrVIII:62605-62898 4.90e-01 100 chrVIII:74776-75923 9.68e-01 100 chrVIII:103868-104731 3.39e-01 100 chrVIII:115841-116410 3.27e-12 25_[+1(1.58e-10)]_24_[+2(5.48e-09)]_\ 1 chrVIII:125889-126320 8.43e-04 46_[-3(3.65e-07)]_37 chrVIII:134112-134683 8.01e-09 22_[-1(9.74e-12)]_49 chrVIII:144272-146458 4.11e-02 100 chrVIII:148923-149435 8.64e-01 100 chrVIII:174819-176051 3.86e-01 100 chrVIII:237756-238585 3.56e-01 100 chrVIII:296664-297249 4.64e-01 100 chrVIII:358285-358887 1.87e-04 7_[+2(1.20e-07)]_72 chrVIII:381501-382359 6.98e-01 100 chrVIII:382699-383354 4.92e-01 100 chrVIII:388655-389005 3.14e-01 100 chrVIII:451291-453146 8.98e-01 100 chrVIII:466645-467298 7.93e-04 73_[-2(5.58e-07)]_6 chrVIII:475479-475913 6.66e-06 53_[+1(1.58e-09)]_18 chrVIII:487756-488042 9.74e-01 100 chrVIII:488330-488719 1.09e-01 67_[+2(4.35e-05)]_12 chrVIII:505800-506228 1.66e-03 33_[+3(2.20e-07)]_50 chrVIII:555764-556367 7.38e-01 100 chrVIII:556586-556914 1.61e-03 54_[-2(1.51e-06)]_25 chrVIII:562317-562592 5.90e-06 58_[+3(5.66e-10)]_1_[+3(1.63e-06)]_\ 7 chrX:58997-59396 2.41e-05 [+2(5.48e-09)]_79 chrX:73374-76505 6.38e-01 100 chrX:89886-90460 6.34e-01 100 chrX:115759-116259 4.75e-01 100 chrX:139127-140308 9.33e-01 100 chrX:156574-157238 4.66e-01 100 chrX:157423-157889 5.79e-01 100 chrX:196533-197447 9.85e-01 100 chrX:204553-204990 3.46e-10 18_[-2(7.26e-06)]_23_[-1(1.13e-11)]_\ 9 chrX:233654-234192 6.51e-05 70_[-2(9.18e-09)]_9 chrX:236423-236978 9.86e-02 100 chrX:348847-349455 9.39e-01 100 chrX:353992-354487 5.36e-03 59_[-2(9.79e-07)]_20 chrX:355186-355800 3.46e-10 17_[-2(7.26e-06)]_23_[-1(1.13e-11)]_\ 10 chrX:374179-374874 1.02e-08 23_[+1(2.13e-09)]_23_[+2(5.30e-06)]_\ 4 chrX:378219-378728 6.19e-01 100 chrX:390814-391345 6.26e-11 7_[+1(1.99e-11)]_24_[+2(8.95e-07)]_\ 19 chrX:391801-392199 2.68e-03 42_[-3(1.35e-06)]_41 chrX:396577-396956 4.96e-12 3_[+1(2.08e-12)]_22_[+2(6.15e-07)]_\ 25 chrX:414747-415363 3.05e-07 10_[-1(5.55e-10)]_61 chrX:415690-416243 2.45e-04 8_[+1(7.29e-08)]_63 chrX:422736-423232 3.07e-10 7_[-2(8.95e-07)]_24_[-1(1.09e-10)]_\ 19 chrX:424271-424716 1.27e-05 46_[+2(4.58e-09)]_33 chrX:517655-518112 1.14e-03 25_[+2(2.44e-06)]_54 chrX:523833-524392 1.99e-07 5_[+2(1.04e-11)]_74 chrX:531598-532347 7.22e-01 100 chrX:538021-538814 2.75e-01 100 chrX:540726-543269 5.38e-01 100 chrX:545430-545734 2.27e-04 21_[+3(1.69e-07)]_62 chrX:607899-608158 9.20e-04 16_[-3(7.14e-07)]_1_[-3(1.11e-05)]_\ 49 chrX:617697-618155 2.49e-07 47_[-2(9.42e-10)]_32 chrX:650913-651616 9.70e-01 100 chrX:690590-690864 4.28e-05 36_[-3(3.30e-09)]_47 chrX:702950-703660 1.21e-01 100 chrX:745075-745748 5.42e-02 100 chrXI:4-180 3.74e-09 4_[-3(5.66e-10)]_79 chrXI:782-1085 6.27e-01 100 chrXI:46714-47010 6.49e-01 100 chrXI:67795-68045 3.04e-03 41_[-3(1.97e-06)]_42 chrXI:74387-75017 8.02e-05 22_[-1(5.94e-09)]_49 chrXI:83987-84671 4.64e-01 100 chrXI:99730-99958 2.74e-02 54_[-3(2.79e-05)]_29 chrXI:108665-110138 2.21e-01 100 chrXI:140702-141482 2.46e-01 100 chrXI:157542-158019 4.11e-01 100 chrXI:158190-159554 7.11e-01 100 chrXI:162238-162730 3.60e-08 46_[+1(2.62e-11)]_25 chrXI:202509-203281 6.05e-02 100 chrXI:219623-220113 6.04e-01 100 chrXI:247400-248363 7.32e-01 100 chrXI:302682-303255 9.38e-04 4_[-2(2.26e-06)]_75 chrXI:307932-308623 2.20e-01 100 chrXI:312406-314019 3.30e-01 100 chrXI:325922-327545 6.24e-01 100 chrXI:360394-362333 7.02e-01 100 chrXI:382176-382479 1.62e-06 26_[-3(1.47e-07)]_36_[+2(3.05e-06)] chrXI:431363-431675 2.83e-03 23_[-3(1.22e-06)]_60 chrXI:457985-459567 2.30e-01 100 chrXI:490726-491296 1.25e-10 11_[-2(9.18e-09)]_24_[-1(2.13e-09)]_\ 15 chrXI:512897-513601 6.79e-01 100 chrXI:517793-518070 8.56e-01 100 chrXI:574900-576367 8.08e-02 100 chrXI:578724-579472 9.45e-01 100 chrXI:618765-619273 3.16e-04 12_[-3(6.06e-06)]_9_[+3(3.71e-06)]_\ 45 chrXI:666621-666791 1.03e-06 2_[+3(1.80e-06)]_15_[+3(5.66e-10)]_\ 23_[+3(8.54e-08)]_9 chrXII:47689-49240 9.69e-01 100 chrXII:92346-92731 3.53e-03 64_[-2(8.16e-07)]_15 chrXII:167780-168253 2.54e-07 33_[+2(1.04e-11)]_46 chrXII:198658-199670 5.39e-03 30_[+1(7.91e-05)]_41 chrXII:214673-215069 7.83e-07 55_[+1(8.52e-11)]_16 chrXII:232091-234195 3.71e-01 100 chrXII:241631-242030 1.04e-02 25_[-3(2.37e-06)]_4_[-3(8.93e-06)]_\ 37 chrXII:261083-263945 6.42e-01 100 chrXII:281967-284029 2.49e-01 100 chrXII:366035-366543 4.81e-01 100 chrXII:367753-368467 3.82e-01 100 chrXII:370637-370874 2.07e-05 8_[+3(1.57e-05)]_52_[+3(5.74e-07)]_\ 6 chrXII:373799-374048 3.90e-01 100 chrXII:374209-374683 7.75e-06 8_[-1(7.67e-10)]_63 chrXII:424194-424537 5.33e-01 100 chrXII:426899-427550 1.07e-06 6_[-1(4.48e-11)]_65 chrXII:448529-448946 3.18e-03 8_[+2(2.26e-06)]_71 chrXII:459609-460690 3.20e-01 100 chrXII:498257-499838 8.81e-02 49_[+2(9.81e-05)]_30 chrXII:521752-522907 1.29e-02 22_[-3(2.17e-06)]_61 chrXII:523066-523259 6.92e-01 100 chrXII:592323-592816 5.82e-10 15_[-3(1.11e-05)]_42_[+2(9.42e-10)]_\ 5 chrXII:605142-605618 4.29e-05 76_[+2(6.53e-09)]_3 chrXII:628073-628850 5.46e-05 63_[-1(3.57e-08)]_8 chrXII:636754-639904 2.38e-01 100 chrXII:656838-657216 6.47e-05 3_[+2(1.08e-08)]_76 chrXII:673488-674939 7.54e-01 100 chrXII:710595-710882 3.80e-06 43_[-3(1.21e-08)]_40 chrXII:713145-713804 3.23e-01 100 chrXII:731044-732334 8.90e-01 100 chrXII:734602-734977 9.19e-06 67_[-2(2.15e-09)]_12 chrXII:780628-780855 6.91e-01 100 chrXII:781023-781888 5.62e-01 100 chrXII:783914-784522 7.39e-01 100 chrXII:793772-795395 9.90e-01 100 chrXII:796271-797596 8.33e-02 [+3(3.52e-05)]_83 chrXII:805396-806833 4.78e-01 100 chrXII:818502-820322 9.35e-01 100 chrXII:837722-839372 8.20e-01 100 chrXII:874977-875669 4.37e-01 100 chrXII:897184-897371 9.48e-01 100 chrXII:897534-898751 5.15e-01 100 chrXII:903403-903694 5.92e-05 22_[-3(3.65e-07)]_61 chrXII:921712-922855 7.45e-01 100 chrXII:930496-931329 7.31e-01 100 chrXII:932067-932512 1.89e-03 32_[+3(2.17e-06)]_8_[+3(3.71e-06)]_\ 26 chrXII:951175-953207 3.83e-01 100 chrXII:962807-963324 1.08e-05 14_[+2(4.58e-09)]_65 chrXII:975783-976185 2.73e-05 42_[+1(1.75e-09)]_29 chrXII:1018128-1019889 2.08e-01 100 chrXII:1028179-1028609 3.71e-03 52_[-3(8.88e-07)]_31 chrXII:1051926-1052227 4.50e-08 38_[+1(2.62e-11)]_33 chrXIII:5445-5662 6.34e-06 38_[-3(5.66e-10)]_2_[-3(5.66e-10)]_\ 26 chrXIII:91412-92083 3.00e-02 100 chrXIII:131611-132073 1.02e-08 26_[+1(2.13e-09)]_23_[+2(5.30e-06)]_\ 1 chrXIII:145910-146573 8.90e-02 100 chrXIII:159349-159766 4.62e-01 100 chrXIII:161769-162669 1.25e-01 4_[+3(9.71e-05)]_79 chrXIII:168246-169040 9.85e-01 100 chrXIII:195943-196301 1.16e-05 72_[+2(8.16e-07)]_7 chrXIII:224927-226572 2.73e-01 100 chrXIII:253355-253595 2.28e-01 100 chrXIII:258989-259442 2.22e-08 48_[+2(1.04e-11)]_31 chrXIII:288090-289702 4.27e-01 100 chrXIII:290575-291172 1.03e-05 26_[-1(1.58e-09)]_45 chrXIII:296718-298885 3.93e-03 58_[-3(2.62e-05)]_25 chrXIII:302796-303132 4.29e-03 47_[+3(1.80e-06)]_36 chrXIII:320799-321328 9.94e-01 100 chrXIII:347612-349126 3.01e-01 100 chrXIII:352076-353183 1.20e-01 100 chrXIII:362933-363314 3.18e-04 39_[-1(3.85e-08)]_32 chrXIII:372177-372659 5.37e-07 70_[+1(9.66e-11)]_1 chrXIII:378878-379656 6.80e-01 100 chrXIII:420314-420868 4.79e-06 40_[+1(6.89e-10)]_31 chrXIII:463321-464277 9.19e-01 100 chrXIII:480400-480821 2.45e-07 54_[+1(5.82e-11)]_17 chrXIII:499023-500619 2.77e-01 100 chrXIII:504904-505255 2.88e-01 100 chrXIII:549883-553200 7.71e-03 33_[+3(1.10e-06)]_50 chrXIII:572601-573607 2.64e-02 100 chrXIII:586349-586907 1.20e-06 51_[+1(9.66e-11)]_20 chrXIII:731895-733154 9.96e-01 100 chrXIII:747359-748149 1.79e-01 100 chrXIII:753034-756256 9.66e-01 100 chrXIII:768195-768448 8.49e-01 100 chrXIII:808076-808549 1.81e-03 29_[+2(2.26e-06)]_50 chrXIII:837753-838266 2.23e-04 34_[-1(5.93e-08)]_37 chrXIII:861167-861443 2.41e-01 100 chrXIII:872675-872939 7.39e-02 61_[+3(8.47e-05)]_22 chrXIV:6619-6944 1.61e-03 43_[+2(1.51e-06)]_36 chrXIV:61977-64542 5.68e-01 100 chrXIV:96009-96472 2.35e-07 44_[+1(1.24e-10)]_27 chrXIV:102570-103209 9.99e-01 100 chrXIV:103471-103626 1.16e-01 100 chrXIV:104548-105595 9.01e-01 100 chrXIV:241382-241867 3.58e-02 24_[-3(1.37e-05)]_59 chrXIV:302649-303815 2.10e-01 100 chrXIV:304268-304450 3.39e-01 100 chrXIV:330756-331118 5.84e-03 61_[-3(1.97e-06)]_22 chrXIV:374664-375106 5.13e-04 38_[-2(8.26e-08)]_41 chrXIV:415250-416201 5.87e-01 100 chrXIV:442786-443265 1.96e-03 35_[-2(3.01e-07)]_44 chrXIV:443552-444798 5.99e-01 100 chrXIV:495191-495774 1.74e-01 100 chrXIV:499312-500728 8.64e-01 100 chrXIV:501515-502783 3.56e-01 100 chrXIV:518803-519131 2.43e-02 100 chrXIV:525069-525298 9.06e-01 100 chrXIV:546534-547599 8.26e-01 100 chrXIV:560607-560917 8.39e-05 27_[+2(5.48e-09)]_52 chrXIV:568054-568604 9.94e-01 100 chrXIV:569606-570094 3.97e-08 60_[+1(2.29e-11)]_11 chrXIV:602074-602532 1.38e-05 14_[-2(7.66e-05)]_28_[-2(2.15e-09)]_\ 16 chrXIV:631513-632129 1.38e-06 68_[+1(4.53e-09)]_3 chrXIV:632431-632927 1.10e-06 20_[-1(1.58e-10)]_51 chrXIV:715976-716635 9.11e-01 100 chrXIV:725698-726582 1.13e-04 37_[+1(3.32e-08)]_34 chrXIV:763970-764268 2.41e-02 72_[+3(5.60e-06)]_11 chrXIV:778437-779211 3.29e-01 100 chrXIV:783724-784321 8.44e-05 61_[+3(8.54e-08)]_22 chrXV:28763-30406 2.61e-01 100 chrXV:79732-80142 1.20e-02 57_[+3(2.60e-06)]_26 chrXV:80367-81160 9.47e-01 100 chrXV:92703-94799 7.05e-01 100 chrXV:109558-110017 1.51e-01 100 chrXV:110862-111204 8.11e-03 24_[+2(3.05e-06)]_55 chrXV:113483-113881 4.58e-01 100 chrXV:159273-160131 3.62e-01 100 chrXV:160336-160669 9.47e-01 100 chrXV:161096-161712 3.52e-01 100 chrXV:168081-168394 1.02e-02 18_[-3(2.17e-06)]_65 chrXV:216279-216700 4.79e-03 18_[-3(6.06e-06)]_65 chrXV:226325-226902 6.30e-09 41_[+1(9.02e-13)]_30 chrXV:228091-228576 3.80e-05 52_[-2(2.75e-08)]_27 chrXV:252849-254133 1.33e-01 100 chrXV:274451-275028 4.91e-04 61_[-1(9.54e-08)]_10 chrXV:281990-282504 1.91e-08 14_[-1(2.08e-12)]_57 chrXV:287192-288425 2.62e-01 100 chrXV:300908-302190 3.41e-02 100 chrXV:340129-340590 2.40e-05 36_[+2(9.18e-09)]_43 chrXV:353919-354326 2.77e-05 15_[+2(5.48e-09)]_64 chrXV:438468-439031 3.23e-08 16_[-1(1.58e-10)]_55 chrXV:444671-446176 7.35e-01 100 chrXV:464292-464784 4.54e-07 40_[-1(7.67e-10)]_31 chrXV:487432-487790 6.27e-01 100 chrXV:504951-505516 7.78e-01 100 chrXV:571638-572139 1.00e+00 100 chrXV:594307-594676 2.85e-01 100 chrXV:631883-632176 4.11e-01 100 chrXV:639119-639486 4.09e-07 61_[+3(1.97e-10)]_22 chrXV:663434-664301 1.04e-03 42_[+2(3.72e-07)]_37 chrXV:678153-678369 9.92e-01 100 chrXV:678610-679183 4.11e-01 100 chrXV:679353-679656 7.94e-02 100 chrXV:710120-710483 8.29e-01 100 chrXV:779700-780953 8.23e-01 100 chrXV:854019-854820 1.67e-01 100 chrXV:866216-867276 9.67e-03 56_[+3(8.28e-06)]_27 chrXV:901428-901651 1.13e-02 47_[+3(3.40e-06)]_36 chrXV:925182-925424 4.13e-01 100 chrXV:961242-962762 7.77e-01 100 chrXV:962968-963196 1.73e-01 100 chrXV:968119-968495 6.59e-04 8_[+3(1.47e-07)]_75 chrXV:976378-976636 9.13e-07 13_[-1(1.09e-10)]_58 chrXV:978801-979187 3.79e-01 100 chrXV:979469-981308 7.56e-01 100 chrXV:1003986-1004664 8.55e-01 100 chrXV:1025713-1026000 2.23e-02 68_[-3(4.77e-06)]_15 chrXV:1027879-1029089 7.71e-02 100 chrXVI:55833-56430 7.63e-01 100 chrXVI:76305-76868 2.70e-01 100 chrXVI:134920-135281 9.24e-01 100 chrXVI:135437-135841 1.20e-02 33_[+3(3.12e-06)]_50 chrXVI:172858-173935 9.08e-01 100 chrXVI:188336-189367 2.26e-01 100 chrXVI:209978-210507 6.41e-02 100 chrXVI:279981-280237 3.86e-05 53_[-3(1.21e-08)]_30 chrXVI:280568-282976 6.99e-03 42_[-3(1.22e-06)]_41 chrXVI:297600-298351 6.44e-01 100 chrXVI:302633-304296 7.38e-02 100 chrXVI:338105-338268 5.35e-01 100 chrXVI:338745-339272 9.95e-01 100 chrXVI:378641-380531 2.89e-01 100 chrXVI:404566-406656 7.55e-01 100 chrXVI:435460-436201 9.90e-01 100 chrXVI:519974-520543 7.16e-01 100 chrXVI:559991-560502 1.86e-05 67_[+2(1.20e-07)]_12 chrXVI:572181-572720 6.50e-01 100 chrXVI:581838-582403 1.57e-07 41_[-1(3.93e-11)]_30 chrXVI:622323-623083 1.89e-01 100 chrXVI:689347-689850 3.89e-07 21_[-2(5.79e-11)]_58 chrXVI:699679-700656 3.47e-03 15_[-3(2.60e-06)]_18_[-3(1.92e-05)]_\ 33 chrXVI:718367-719690 6.63e-01 100 chrXVI:731639-732726 2.05e-01 100 chrXVI:744058-744578 5.81e-08 20_[-2(5.58e-07)]_23_[-1(1.24e-07)]_\ 7 chrXVI:768560-769488 3.03e-01 100 chrXVI:775657-776053 6.17e-03 5_[+2(1.64e-06)]_74 chrXVI:794459-796622 7.47e-02 100 chrXVI:810574-812114 7.87e-01 100 chrXVI:819038-820012 1.92e-05 58_[-2(2.15e-09)]_21 chrXVI:821652-822152 7.74e-01 100 chrXVI:856733-857169 2.14e-10 5_[-2(1.08e-08)]_24_[-1(7.09e-09)]_\ 21 chrXVI:860167-860730 6.25e-09 28_[-1(3.94e-12)]_43 chrXVI:879551-880572 2.35e-01 100 chrXVI:940795-942497 2.56e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************