******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ARR1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71736-73252 1.0000 100 chrI:81910-82280 1.0000 100 chrI:138952-139351 1.0000 100 chrI:139517-139736 1.0000 100 chrI:166168-166591 1.0000 100 chrI:181122-181490 1.0000 100 chrI:182202-183189 1.0000 100 chrII:9453-10037 1.0000 100 chrII:36229-36629 1.0000 100 chrII:44956-45355 1.0000 100 chrII:59858-61461 1.0000 100 chrII:87915-88581 1.0000 100 chrII:89664-90333 1.0000 100 chrII:165055-165438 1.0000 100 chrII:167730-168214 1.0000 100 chrII:181314-181658 1.0000 100 chrII:197230-197852 1.0000 100 chrII:226967-227383 1.0000 100 chrII:256356-257953 1.0000 100 chrII:266181-266742 1.0000 100 chrII:326482-327121 1.0000 100 chrII:332192-333061 1.0000 100 chrII:347407-348157 1.0000 100 chrII:350599-351060 1.0000 100 chrII:405670-406307 1.0000 100 chrII:415491-415889 1.0000 100 chrII:476452-476681 1.0000 100 chrII:476892-477744 1.0000 100 chrII:592347-593767 1.0000 100 chrII:604036-607109 1.0000 100 chrII:642850-643258 1.0000 100 chrII:644939-645452 1.0000 100 chrIII:70-606 1.0000 100 chrIII:13991-15655 1.0000 100 chrIII:15909-16896 1.0000 100 chrIII:30572-31149 1.0000 100 chrIII:58684-59359 1.0000 100 chrIII:81826-82673 1.0000 100 chrIII:90848-91198 1.0000 100 chrIII:107221-107831 1.0000 100 chrIII:123309-123819 1.0000 100 chrIII:127501-127901 1.0000 100 chrIII:141986-142962 1.0000 100 chrIII:149538-150213 1.0000 100 chrIII:151047-151526 1.0000 100 chrIII:163463-163903 1.0000 100 chrIII:168099-168560 1.0000 100 chrIII:177075-178784 1.0000 100 chrIII:227751-228231 1.0000 100 chrIII:262706-263104 1.0000 100 chrIII:295295-295904 1.0000 100 chrIII:308104-309360 1.0000 100 chrIII:314909-316045 1.0000 100 chrIII:316250-316593 1.0000 100 chrIV:12-240 1.0000 100 chrIV:83322-83808 1.0000 100 chrIV:117143-117908 1.0000 100 chrIV:129799-131018 1.0000 100 chrIV:216601-218075 1.0000 100 chrIV:221678-222367 1.0000 100 chrIV:229090-230719 1.0000 100 chrIV:306678-309406 1.0000 100 chrIV:321606-321956 1.0000 100 chrIV:322207-323589 1.0000 100 chrIV:340474-341868 1.0000 100 chrIV:358005-358513 1.0000 100 chrIV:359363-359885 1.0000 100 chrIV:410184-410784 1.0000 100 chrIV:411238-411690 1.0000 100 chrIV:434017-434996 1.0000 100 chrIV:437548-438390 1.0000 100 chrIV:488337-489125 1.0000 100 chrIV:490245-491276 1.0000 100 chrIV:491440-492793 1.0000 100 chrIV:519650-519914 1.0000 100 chrIV:520737-521433 1.0000 100 chrIV:555840-556404 1.0000 100 chrIV:568645-569382 1.0000 100 chrIV:578870-580747 1.0000 100 chrIV:601213-602331 1.0000 100 chrIV:619682-620468 1.0000 100 chrIV:644912-645382 1.0000 100 chrIV:667728-668260 1.0000 100 chrIV:757515-758207 1.0000 100 chrIV:802554-803045 1.0000 100 chrIV:835757-837158 1.0000 100 chrIV:884255-884639 1.0000 100 chrIV:915294-916222 1.0000 100 chrIV:946120-946824 1.0000 100 chrIV:980641-981162 1.0000 100 chrIV:992719-993227 1.0000 100 chrIV:1013433-1013981 1.0000 100 chrIV:1016946-1017517 1.0000 100 chrIV:1075284-1075769 1.0000 100 chrIV:1094811-1095689 1.0000 100 chrIV:1150708-1151159 1.0000 100 chrIV:1175744-1176625 1.0000 100 chrIV:1201519-1202109 1.0000 100 chrIV:1256525-1257322 1.0000 100 chrIV:1300735-1301346 1.0000 100 chrIV:1305409-1305871 1.0000 100 chrIV:1351787-1352005 1.0000 100 chrIV:1352217-1353318 1.0000 100 chrIV:1353718-1356017 1.0000 100 chrIV:1359416-1361253 1.0000 100 chrIV:1401198-1403424 1.0000 100 chrIV:1449906-1451665 1.0000 100 chrIV:1461434-1461849 1.0000 100 chrIV:1489140-1489796 1.0000 100 chrIX:68249-68980 1.0000 100 chrIX:98238-99443 1.0000 100 chrIX:99632-100296 1.0000 100 chrIX:174555-175702 1.0000 100 chrIX:183286-183734 1.0000 100 chrIX:197354-197995 1.0000 100 chrIX:210657-210941 1.0000 100 chrIX:248539-249003 1.0000 100 chrIX:254214-254569 1.0000 100 chrIX:257368-257931 1.0000 100 chrIX:299967-300907 1.0000 100 chrIX:315403-317653 1.0000 100 chrIX:323756-324384 1.0000 100 chrIX:325735-326210 1.0000 100 chrIX:336092-336631 1.0000 100 chrIX:370219-370644 1.0000 100 chrIX:391170-392491 1.0000 100 chrV:53510-53971 1.0000 100 chrV:61035-62169 1.0000 100 chrV:67145-68836 1.0000 100 chrV:85108-86978 1.0000 100 chrV:99895-100326 1.0000 100 chrV:117546-118326 1.0000 100 chrV:130824-131404 1.0000 100 chrV:135077-136087 1.0000 100 chrV:138436-139981 1.0000 100 chrV:140155-140922 1.0000 100 chrV:176856-177506 1.0000 100 chrV:207350-207560 1.0000 100 chrV:249783-250744 1.0000 100 chrV:270380-271010 1.0000 100 chrV:288157-288788 1.0000 100 chrV:305809-307396 1.0000 100 chrV:311726-312302 1.0000 100 chrV:322016-323572 1.0000 100 chrV:354695-355412 1.0000 100 chrV:361996-362478 1.0000 100 chrV:395622-395931 1.0000 100 chrV:396153-398007 1.0000 100 chrV:422860-424336 1.0000 100 chrV:431023-431972 1.0000 100 chrV:434381-434979 1.0000 100 chrV:435574-436029 1.0000 100 chrV:438503-438978 1.0000 100 chrV:441774-442706 1.0000 100 chrV:442977-443365 1.0000 100 chrV:469226-470223 1.0000 100 chrV:487081-487637 1.0000 100 chrV:492195-492579 1.0000 100 chrV:550976-551579 1.0000 100 chrVI:63978-65398 1.0000 100 chrVI:95468-95894 1.0000 100 chrVI:101014-101691 1.0000 100 chrVI:136125-137703 1.0000 100 chrVI:157845-158245 1.0000 100 chrVI:162017-162392 1.0000 100 chrVI:167107-167702 1.0000 100 chrVI:180630-181285 1.0000 100 chrVI:190962-191780 1.0000 100 chrVI:210437-210931 1.0000 100 chrVI:220510-224169 1.0000 100 chrVI:226552-226982 1.0000 100 chrVII:268-1485 1.0000 100 chrVII:110298-110789 1.0000 100 chrVII:115322-115729 1.0000 100 chrVII:121847-122993 1.0000 100 chrVII:148085-149583 1.0000 100 chrVII:185206-185918 1.0000 100 chrVII:205290-205815 1.0000 100 chrVII:254099-254758 1.0000 100 chrVII:255197-255601 1.0000 100 chrVII:276979-278709 1.0000 100 chrVII:287087-287699 1.0000 100 chrVII:291590-291953 1.0000 100 chrVII:310068-312928 1.0000 100 chrVII:319218-320139 1.0000 100 chrVII:328389-329072 1.0000 100 chrVII:345757-346628 1.0000 100 chrVII:362387-364422 1.0000 100 chrVII:364917-366721 1.0000 100 chrVII:371227-371524 1.0000 100 chrVII:401413-401619 1.0000 100 chrVII:405460-405891 1.0000 100 chrVII:411894-412590 1.0000 100 chrVII:422865-423547 1.0000 100 chrVII:437221-439902 1.0000 100 chrVII:440505-441104 1.0000 100 chrVII:479035-482699 1.0000 100 chrVII:531262-532536 1.0000 100 chrVII:533656-535202 1.0000 100 chrVII:541711-542193 1.0000 100 chrVII:544388-544874 1.0000 100 chrVII:545104-545994 1.0000 100 chrVII:554580-557470 1.0000 100 chrVII:561492-561723 1.0000 100 chrVII:610580-611455 1.0000 100 chrVII:648780-649402 1.0000 100 chrVII:661500-661954 1.0000 100 chrVII:700429-701256 1.0000 100 chrVII:706907-707187 1.0000 100 chrVII:726276-728352 1.0000 100 chrVII:730945-731451 1.0000 100 chrVII:736181-736882 1.0000 100 chrVII:738892-739536 1.0000 100 chrVII:774109-774790 1.0000 100 chrVII:779362-779927 1.0000 100 chrVII:786918-788780 1.0000 100 chrVII:794090-794585 1.0000 100 chrVII:823339-823723 1.0000 100 chrVII:828442-828988 1.0000 100 chrVII:845421-845989 1.0000 100 chrVII:856735-857003 1.0000 100 chrVII:857193-857661 1.0000 100 chrVII:876161-878147 1.0000 100 chrVII:878559-879039 1.0000 100 chrVII:930211-931634 1.0000 100 chrVII:1000346-1000570 1.0000 100 chrVII:1004028-1004434 1.0000 100 chrVIII:34410-36146 1.0000 100 chrVIII:62513-63076 1.0000 100 chrVIII:74767-75913 1.0000 100 chrVIII:103823-105399 1.0000 100 chrVIII:115604-116404 1.0000 100 chrVIII:125879-127505 1.0000 100 chrVIII:132375-133114 1.0000 100 chrVIII:134123-134689 1.0000 100 chrVIII:145316-146492 1.0000 100 chrVIII:148918-149435 1.0000 100 chrVIII:174906-175415 1.0000 100 chrVIII:237123-237493 1.0000 100 chrVIII:237745-238138 1.0000 100 chrVIII:296745-297552 1.0000 100 chrVIII:358194-358789 1.0000 100 chrVIII:381145-382442 1.0000 100 chrVIII:382690-383383 1.0000 100 chrVIII:388652-389004 1.0000 100 chrVIII:411012-411641 1.0000 100 chrVIII:451302-453050 1.0000 100 chrVIII:466815-467640 1.0000 100 chrVIII:475498-475919 1.0000 100 chrVIII:505802-506236 1.0000 100 chrVIII:555103-555404 1.0000 100 chrVIII:555759-556453 1.0000 100 chrVIII:562330-562593 1.0000 100 chrX:58996-59418 1.0000 100 chrX:73175-75749 1.0000 100 chrX:89752-90451 1.0000 100 chrX:115754-116269 1.0000 100 chrX:120339-121905 1.0000 100 chrX:139231-140287 1.0000 100 chrX:157432-157942 1.0000 100 chrX:196739-196900 1.0000 100 chrX:197096-197448 1.0000 100 chrX:204554-204979 1.0000 100 chrX:233685-234242 1.0000 100 chrX:353973-354479 1.0000 100 chrX:355180-355763 1.0000 100 chrX:374165-374853 1.0000 100 chrX:378015-378742 1.0000 100 chrX:381486-383371 1.0000 100 chrX:390838-391339 1.0000 100 chrX:391808-392116 1.0000 100 chrX:396011-396241 1.0000 100 chrX:396540-396956 1.0000 100 chrX:414759-415247 1.0000 100 chrX:415520-416237 1.0000 100 chrX:422649-423400 1.0000 100 chrX:424265-424720 1.0000 100 chrX:517640-518102 1.0000 100 chrX:523609-524447 1.0000 100 chrX:531491-532256 1.0000 100 chrX:538021-539126 1.0000 100 chrX:540888-541905 1.0000 100 chrX:542758-543372 1.0000 100 chrX:545425-545769 1.0000 100 chrX:607900-609023 1.0000 100 chrX:617683-618233 1.0000 100 chrX:651104-651621 1.0000 100 chrX:663666-664312 1.0000 100 chrX:702924-703663 1.0000 100 chrX:745056-745748 1.0000 100 chrXI:2-184 1.0000 100 chrXI:767-1081 1.0000 100 chrXI:46708-47025 1.0000 100 chrXI:67731-68028 1.0000 100 chrXI:74390-74879 1.0000 100 chrXI:75047-75211 1.0000 100 chrXI:83993-84446 1.0000 100 chrXI:108522-110141 1.0000 100 chrXI:140734-141504 1.0000 100 chrXI:158201-159834 1.0000 100 chrXI:162002-162805 1.0000 100 chrXI:202349-203282 1.0000 100 chrXI:219648-220120 1.0000 100 chrXI:302728-303243 1.0000 100 chrXI:307934-308538 1.0000 100 chrXI:313201-314028 1.0000 100 chrXI:326408-327458 1.0000 100 chrXI:379691-379950 1.0000 100 chrXI:382175-382459 1.0000 100 chrXI:430674-431691 1.0000 100 chrXI:457981-459360 1.0000 100 chrXI:490741-491406 1.0000 100 chrXI:513116-513594 1.0000 100 chrXI:517787-518068 1.0000 100 chrXI:558690-559443 1.0000 100 chrXI:578638-579348 1.0000 100 chrXI:617694-619272 1.0000 100 chrXI:666013-666175 1.0000 100 chrXI:666613-666795 1.0000 100 chrXII:48700-49246 1.0000 100 chrXII:64159-64635 1.0000 100 chrXII:92293-93027 1.0000 100 chrXII:167766-168258 1.0000 100 chrXII:198373-199753 1.0000 100 chrXII:201642-203030 1.0000 100 chrXII:214675-215068 1.0000 100 chrXII:231966-234218 1.0000 100 chrXII:241629-242035 1.0000 100 chrXII:262834-263944 1.0000 100 chrXII:282576-283988 1.0000 100 chrXII:346284-346621 1.0000 100 chrXII:366025-366570 1.0000 100 chrXII:369654-370250 1.0000 100 chrXII:374182-374657 1.0000 100 chrXII:424199-424494 1.0000 100 chrXII:426900-427445 1.0000 100 chrXII:448510-448959 1.0000 100 chrXII:459613-460229 1.0000 100 chrXII:460427-460695 1.0000 100 chrXII:498364-500197 1.0000 100 chrXII:521908-523311 1.0000 100 chrXII:592337-592820 1.0000 100 chrXII:605135-605625 1.0000 100 chrXII:628162-628985 1.0000 100 chrXII:636736-639954 1.0000 100 chrXII:656840-657226 1.0000 100 chrXII:673511-674565 1.0000 100 chrXII:710577-711977 1.0000 100 chrXII:713061-713617 1.0000 100 chrXII:731518-732398 1.0000 100 chrXII:734584-735009 1.0000 100 chrXII:780515-781886 1.0000 100 chrXII:783901-784519 1.0000 100 chrXII:793778-795399 1.0000 100 chrXII:796252-797435 1.0000 100 chrXII:818502-820390 1.0000 100 chrXII:855799-857599 1.0000 100 chrXII:875188-875677 1.0000 100 chrXII:897185-897343 1.0000 100 chrXII:897645-899688 1.0000 100 chrXII:903389-904455 1.0000 100 chrXII:921716-922917 1.0000 100 chrXII:930537-931843 1.0000 100 chrXII:932080-932540 1.0000 100 chrXII:962795-963294 1.0000 100 chrXII:975765-976209 1.0000 100 chrXII:1018104-1019392 1.0000 100 chrXII:1028156-1028602 1.0000 100 chrXII:1051783-1052228 1.0000 100 chrXIII:5450-5662 1.0000 100 chrXIII:91485-92084 1.0000 100 chrXIII:131176-132113 1.0000 100 chrXIII:145715-147237 1.0000 100 chrXIII:162983-164328 1.0000 100 chrXIII:168206-169356 1.0000 100 chrXIII:195929-196306 1.0000 100 chrXIII:222673-223817 1.0000 100 chrXIII:225252-226695 1.0000 100 chrXIII:253370-253575 1.0000 100 chrXIII:253736-253941 1.0000 100 chrXIII:258990-259441 1.0000 100 chrXIII:290537-291158 1.0000 100 chrXIII:296218-296439 1.0000 100 chrXIII:296651-298899 1.0000 100 chrXIII:302863-303335 1.0000 100 chrXIII:320953-321329 1.0000 100 chrXIII:352068-352915 1.0000 100 chrXIII:362938-364181 1.0000 100 chrXIII:372181-372668 1.0000 100 chrXIII:379054-379632 1.0000 100 chrXIII:420314-420888 1.0000 100 chrXIII:463342-464052 1.0000 100 chrXIII:480372-480826 1.0000 100 chrXIII:504900-505236 1.0000 100 chrXIII:549931-553199 1.0000 100 chrXIII:572646-573260 1.0000 100 chrXIII:586339-586923 1.0000 100 chrXIII:731826-733573 1.0000 100 chrXIII:747541-748457 1.0000 100 chrXIII:754406-754925 1.0000 100 chrXIII:768172-768448 1.0000 100 chrXIII:808062-808548 1.0000 100 chrXIII:837745-838330 1.0000 100 chrXIII:861166-861680 1.0000 100 chrXIII:872707-872941 1.0000 100 chrXIV:6617-6996 1.0000 100 chrXIV:63102-64532 1.0000 100 chrXIV:95989-96468 1.0000 100 chrXIV:102575-103525 1.0000 100 chrXIV:104620-105293 1.0000 100 chrXIV:229673-230739 1.0000 100 chrXIV:241366-241781 1.0000 100 chrXIV:330759-331527 1.0000 100 chrXIV:374669-375130 1.0000 100 chrXIV:375329-375512 1.0000 100 chrXIV:442779-444832 1.0000 100 chrXIV:493757-495950 1.0000 100 chrXIV:499257-500711 1.0000 100 chrXIV:518835-519139 1.0000 100 chrXIV:525065-525297 1.0000 100 chrXIV:546529-547444 1.0000 100 chrXIV:560132-560924 1.0000 100 chrXIV:568051-568760 1.0000 100 chrXIV:569634-570084 1.0000 100 chrXIV:576731-577616 1.0000 100 chrXIV:585492-586403 1.0000 100 chrXIV:602069-602555 1.0000 100 chrXIV:631675-632136 1.0000 100 chrXIV:632421-632897 1.0000 100 chrXIV:715959-716623 1.0000 100 chrXIV:725670-726581 1.0000 100 chrXIV:764039-764254 1.0000 100 chrXIV:783715-784323 1.0000 100 chrXV:79694-80141 1.0000 100 chrXV:92734-94807 1.0000 100 chrXV:109574-110669 1.0000 100 chrXV:110847-111268 1.0000 100 chrXV:113489-114091 1.0000 100 chrXV:161075-161563 1.0000 100 chrXV:168098-168456 1.0000 100 chrXV:216277-216713 1.0000 100 chrXV:226414-226898 1.0000 100 chrXV:228049-228541 1.0000 100 chrXV:252845-254711 1.0000 100 chrXV:274464-275039 1.0000 100 chrXV:281891-282901 1.0000 100 chrXV:287644-288430 1.0000 100 chrXV:300869-302108 1.0000 100 chrXV:340115-340755 1.0000 100 chrXV:353397-354477 1.0000 100 chrXV:438428-439342 1.0000 100 chrXV:444616-446371 1.0000 100 chrXV:464272-465045 1.0000 100 chrXV:487431-487775 1.0000 100 chrXV:504981-505508 1.0000 100 chrXV:571420-572141 1.0000 100 chrXV:594303-594650 1.0000 100 chrXV:631872-632059 1.0000 100 chrXV:639174-639473 1.0000 100 chrXV:663466-664200 1.0000 100 chrXV:678601-679179 1.0000 100 chrXV:710122-710528 1.0000 100 chrXV:722910-724609 1.0000 100 chrXV:759010-759517 1.0000 100 chrXV:779691-780996 1.0000 100 chrXV:832253-832783 1.0000 100 chrXV:853627-854774 1.0000 100 chrXV:866503-868055 1.0000 100 chrXV:900073-901250 1.0000 100 chrXV:901453-901657 1.0000 100 chrXV:925129-925435 1.0000 100 chrXV:968147-968943 1.0000 100 chrXV:976378-976629 1.0000 100 chrXV:978807-979156 1.0000 100 chrXV:979752-981302 1.0000 100 chrXV:1003961-1004963 1.0000 100 chrXV:1025713-1026071 1.0000 100 chrXV:1027871-1029511 1.0000 100 chrXV:1091120-1091290 1.0000 100 chrXVI:55838-56426 1.0000 100 chrXVI:75472-76832 1.0000 100 chrXVI:134879-135849 1.0000 100 chrXVI:172688-174041 1.0000 100 chrXVI:188343-189143 1.0000 100 chrXVI:209675-210515 1.0000 100 chrXVI:280553-281903 1.0000 100 chrXVI:302642-304997 1.0000 100 chrXVI:338559-339281 1.0000 100 chrXVI:378646-379009 1.0000 100 chrXVI:404568-405982 1.0000 100 chrXVI:406171-408361 1.0000 100 chrXVI:435264-436182 1.0000 100 chrXVI:519891-520550 1.0000 100 chrXVI:559963-560495 1.0000 100 chrXVI:572173-572724 1.0000 100 chrXVI:581834-582421 1.0000 100 chrXVI:622305-623147 1.0000 100 chrXVI:689350-689864 1.0000 100 chrXVI:699902-700712 1.0000 100 chrXVI:701893-702324 1.0000 100 chrXVI:731621-732698 1.0000 100 chrXVI:744081-744580 1.0000 100 chrXVI:768828-769500 1.0000 100 chrXVI:775634-776118 1.0000 100 chrXVI:794469-795987 1.0000 100 chrXVI:810574-810893 1.0000 100 chrXVI:819321-819830 1.0000 100 chrXVI:821636-822167 1.0000 100 chrXVI:856708-857166 1.0000 100 chrXVI:860163-860694 1.0000 100 chrXVI:879431-880570 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ARR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ARR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ARR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 511 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 51100 N= 511 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ARR1/background): A 0.312 C 0.188 G 0.188 T 0.312 ******************************************************************************** ******************************************************************************** MOTIF DMSSGGRATCGAACCSSGGAC MEME-1 width = 21 sites = 94 llr = 1580 E-value = 1.0e-311 ******************************************************************************** -------------------------------------------------------------------------------- Motif DMSSGGRATCGAACCSSGGAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 43:13:65:::aa::12:26: pos.-specific C :554:::2:7:::a7532:17 probability G 42457a42::a::::345811 matrix T 3:2::::2a3::::21:2:23 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * ****** * Entropy 1.2 ** ******* * (24.2 bits) 1.0 *** ******* * * 0.7 ***** ******** ** * 0.5 ******* *********** * 0.2 ********************* 0.0 --------------------- Multilevel GCCGGGAATCGAACCCGGGAC consensus AAGCA G T TGCCATT sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMSSGGRATCGAACCSSGGAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123309-123819 + 70 2.69e-13 TGTGGGGCGA GCCGGGACTCGAACCCGGGAC CTCCCGCACC chrIX:197354-197995 - 12 1.00e-11 TAACTCCGAA GCGGGGAGTCGAACCCCGGTC TCCACGGTGA chrIV:1016946-1017517 + 33 1.00e-11 AAACTCCGAA GCGGGGAGTCGAACCCCGGTC TCCACGGTGA chrXVI:860163-860694 - 44 1.27e-11 ATCTGCGCAA GCCCGGAATCGAACCGGGGGC CCAACGATGG chrXV:226414-226898 + 12 1.27e-11 ATTTGCGCAA GCCCGGAATCGAACCGGGGGC CCAACGATGG chrX:531491-532256 - 48 1.27e-11 AACTGCGCAA GCCCGGAATCGAACCGGGGGC CCAACGATGG chrX:396540-396956 + 35 1.27e-11 AAATGCGCAA GCCCGGAATCGAACCGGGGGC CCAACGATGG chrVII:845421-845989 - 37 1.27e-11 CATTGCGCAA GCCCGGAATCGAACCGGGGGC CCAACGATGG chrVI:180630-181285 + 74 1.27e-11 GACTGCGCAA GCCCGGAATCGAACCGGGGGC CCAACG chrIV:83322-83808 - 76 1.27e-11 GCAA GCCCGGAATCGAACCGGGGGC CCAACGATGG chrXIII:290537-291158 - 48 2.97e-11 AGACTCCGAT ACGGGGAGTCGAACCCCGGTC TCCACGGTGA chrVII:401413-401619 + 68 2.97e-11 ATACTCCGAT ACGGGGAGTCGAACCCCGGTC TCCACGGTGA chrV:487081-487637 + 29 2.97e-11 ATACTCCGAT ACGGGGAGTCGAACCCCGGTC TCCACGGTGA chrV:176856-177506 - 12 2.97e-11 GTACTCCGAT ACGGGGAGTCGAACCCCGGTC TCCACGGTGA chrIX:370219-370644 - 80 2.97e-11 . ACGGGGAGTCGAACCCCGGTC TCCACGGTGA chrII:644939-645452 - 66 2.97e-11 TAACTCCGAT ACGGGGAGTCGAACCCCGGTC TCCACGGTGA chrVIII:475498-475919 + 55 1.35e-10 AAATGTTCCA ACCGAGGATCGAACTCGGGAC CTTTGCCGTG chrIV:1075284-1075769 + 3 1.35e-10 CA ACCGAGGATCGAACTCGGGAC CTTTGCCGTG chrXV:663466-664200 + 36 2.66e-10 AAATGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrXIII:586339-586923 + 62 2.66e-10 AAATGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrXIII:420314-420888 + 44 2.66e-10 AAATGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrXIII:372181-372668 + 78 2.66e-10 AAATGATTTC GCCCAGGATCGAACTGGGGAC GT chrX:378015-378742 - 78 2.66e-10 TC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrVII:823339-823723 - 47 2.66e-10 AAATGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrV:438503-438978 - 56 2.66e-10 AATTGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrXII:875188-875677 - 62 4.28e-10 GAACTCCTCA TAGGGGGCTCGAACCCCTGAC ATTTCGGTAT chrIV:359363-359885 - 71 4.28e-10 AACTCCTCA TAGGGGGCTCGAACCCCTGAC ATTTCGGTAT chrVIII:134123-134689 - 9 1.04e-09 AAAAGGTCCT ACCCGGATTCGAACCGGGGTT GTCCGGAT chrV:130824-131404 + 25 1.04e-09 AATAGGTCTT ACCCGGATTCGAACCGGGGTT GTTCGGATCA chrIV:644912-645382 + 63 1.04e-09 AAAAGGTCCT ACCCGGATTCGAACCGGGGTT GTCCGGATCA chrIII:168099-168560 + 29 1.04e-09 AAAAGGTCCT ACCCGGATTCGAACCGGGGTT GTCCGGATCA chrXII:426900-427445 - 54 1.37e-09 ATTCTCCGCG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrXI:513116-513594 + 34 1.37e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrX:355180-355763 - 79 1.37e-09 G ACGGGGAATTGAACCCCGATC TGGCACGCGA chrX:204554-204979 - 63 1.37e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrVII:544388-544874 + 3 1.37e-09 CG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrIX:336092-336631 + 45 1.37e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrIV:568645-569382 - 45 1.37e-09 ATTCTCCGCG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrII:405670-406307 - 66 1.37e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrXV:853627-854774 + 44 1.79e-09 AATTGGACGC AACCGGAATCGAACCGATGAC CTCTTCCTTG chrXII:214675-215068 + 69 1.79e-09 AAATGGACGC AACCGGAATCGAACCGATGAC CTCTTCCTTG chrV:311726-312302 + 66 1.79e-09 CATTGGACGC AACCGGAATCGAACCGATGAC CTCTTCCTTG chrXIV:95989-96468 + 70 2.63e-09 ATTTGAGCGG TACGAGAATCGAACCCGTGTC CCCACCTTGG chrVII:779362-779927 - 66 2.63e-09 TCTTGAGCGG TACGAGAATCGAACCCGTGTC CCCACCTTGG chrXIII:195929-196306 + 8 2.98e-09 GGGGCGA GCTGGGAATTGAACCCAGGGC CTCTCGCATG chrXII:92293-93027 - 13 2.98e-09 AAAGGGGCGA GCTGGGAATTGAACCCAGGGC CTCTCGCATG chrXVI:581834-582421 - 30 3.37e-09 GAAAGCCCTG TAGGGGGCTCGAACCCCTAAC CTTATGATTA chrXIII:480372-480826 + 79 3.37e-09 AGAAGCCCTG TAGGGGGCTCGAACCCCTAAC C chrX:414759-415247 - 58 3.37e-09 ATTAGCCCTG TAGGGGGCTCGAACCCCTAAC CTTATGATTA chrV:435574-436029 + 8 3.37e-09 AGCCCTG TAGGGGGCTCGAACCCCTAAC CTTATGATTA chrIV:1201519-1202109 - 31 3.37e-09 ATTAGCCCTG TAGGGGGCTCGAACCCCTAAC CTTATGATTA chrIII:151047-151526 + 55 3.37e-09 GAAAGCCCTG TAGGGGGCTCGAACCCCTAAC CTTATGATTA chrXVI:819321-819830 - 50 3.81e-09 AAATGGTCTC TAGCGGGATCGAACCGCTGAT CCCCGCGTTA chrXIV:569634-570084 + 65 3.81e-09 GAATGGTCTC TAGCGGGATCGAACCGCTGAT CCCCGCGTTA chrVII:738892-739536 - 4 3.81e-09 AAATGGTCTC TAGCGGGATCGAACCGCTGAT CCC chrV:550976-551579 + 65 3.81e-09 AAATGGTCTC TAGCGGGATCGAACCGCTGAT CCCCGCGTTA chrIV:667728-668260 + 70 3.81e-09 AAATGGTCTC TAGCGGGATCGAACCGCTGAT CCCCGCGTTA chrII:326482-327121 + 48 3.81e-09 GTTTGATCCA ACCGAGGTTCGAACTCGGGAT CTTCGCCGTG chrII:197230-197852 - 49 3.81e-09 AAATGGTCTC TAGCGGGATCGAACCGCTGAT CCCCGCGTTA chrIV:884255-884639 - 69 1.30e-08 AAGTGCTCGA GGTGGGGTTTGAACCCACGAC GGTCGCGTTG chrX:538021-539126 - 76 1.94e-08 TCCG TACGGGACTCGAACCCGCAGT CTTCTCCTTA chrX:233685-234242 - 71 2.35e-08 TTCTTCCCC GCCAGGACTCGAACCTGGAAT CTTCTGGTTC chrXVI:856708-857166 - 60 3.72e-08 AAATGGACGA GTCCGGAATCGAACCGGAGAC CTCTCCCATG chrXIII:320953-321329 + 63 3.72e-08 AAATGGACGA GTCCGGAATCGAACCGGAGAC CTCTCCCATG chrX:374165-374853 + 54 5.72e-08 AAGCACTCAC GATGGGGGTCGAACCCATAAT CTTCTGATTA chrVII:828442-828988 + 65 5.72e-08 AAGCACTCAC GATGGGGGTCGAACCCATAAT CTTCTGATTA chrXIII:379054-379632 + 17 6.75e-08 AATTGAAACG GACAGGAATTGAACCTGCAAC CCTTCGATTG chrXI:302728-303243 - 61 6.75e-08 AAATGAAACG GACAGGAATTGAACCTGCAAC CCTTCGATTG chrVII:287087-287699 + 14 6.75e-08 AAATGAAACG GACAGGAATTGAACCTGCAAC CCTTCGATTG chrXV:976378-976629 - 13 7.32e-08 TATTGCTCCA GGGGAGGTTCGAACTCTCGAC CTTCAGATTA chrX:422649-423400 - 8 7.32e-08 ATGTGCTCCA GGGGAGGTTCGAACTCTCGAC CTTCAGA chrX:390838-391339 + 12 7.32e-08 ATATGCTCCA GGGGAGGTTCGAACTCTCGAC CTTCAGATTA chrXII:374182-374657 - 31 7.92e-08 AATCTTCCCC GCCAGGACTTGAACCTGGAAT CTTCTGGTTC chrV:492195-492579 + 22 7.92e-08 ATCCTTCCCC GCCAGGACTTGAACCTGGAAT CTTCTGGTTC chrII:642850-643258 + 10 8.57e-08 GAAGCTCGC ACTCAGGATCGAACTAAGGAC CAACAGATTT chrXIV:725670-726581 + 66 1.45e-07 TACTGAAGGA TGCGAGGTTCGAACTCGCGCG GACAACCGTC chrIV:519650-519914 - 67 1.45e-07 TATTGAAGGA TGCGAGGTTCGAACTCGCGCG GACAACCGTC chrX:523609-524447 + 41 2.34e-07 TAACGACAAC TGCAGGACTCGAACCTGCGCG GGCAAAGCCC chrII:266181-266742 - 12 2.34e-07 AAATGCTTCC AATCGGATTTGAACCGATGAT CTCCACATTA chrII:226967-227383 - 4 2.34e-07 TAACGACAAC TGCAGGACTCGAACCTGCGCG GGC chrVIII:62513-63076 - 55 3.43e-07 AAATGCCATC TCCTAGAATCGAACCAGGGTT TCATCGGCCA chrXVI:559963-560495 + 26 3.64e-07 AAATGCGAAT TCTGTGGATCGAACACAGGAC CTCCAGATAA chrVIII:358194-358789 + 44 3.64e-07 ATATGCGAAT TCTGTGGATCGAACACAGGAC CTCCAGATAA chrXVI:810574-810893 - 39 3.87e-07 ATACGACCCC AGTGAGGGTTGAACTCACGAT CTTGCGATTA chrXIV:632421-632897 - 36 3.87e-07 AAACGACCCC AGTGAGGGTTGAACTCACGAT CTTGCGATTA chrXII:975765-976209 + 53 3.87e-07 AAACGACCCC AGTGAGGGTTGAACTCACGAT CTTGCGATTA chrVII:730945-731451 - 35 3.87e-07 AAACGACCCC AGTGAGGGTTGAACTCACGAT CTTGCGATTA chrXIII:837745-838330 - 2 6.43e-07 ATATCTCCCG GGGGCGAGTCGAACGCCCGAT C chrXVI:689350-689864 - 62 6.78e-07 ATACGACACC AGCAGGATTTGAACCAGCGCG GGCAGAGCCC chrV:288157-288788 + 28 6.78e-07 AAACGACACC AGCAGGATTTGAACCAGCGCG GGCAGAGCCC chrIII:227751-228231 - 74 6.78e-07 GACACC AGCAGGATTTGAACCAGCGCG GGCAGAGCCC chrXV:274464-275039 - 45 7.52e-07 ATGCGTCACA GACAGGATTCGAACCTGCGCA GGTAAAACCC chrXVI:744081-744580 - 48 7.92e-07 TTTTGCCACC TGTCAGAATTGAACTAACGAC CTTTGCATTA chrVII:1004028-1004434 - 79 7.92e-07 C TGTCAGAATTGAACTAACGAC CTTTGCATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMSSGGRATCGAACCSSGGAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123309-123819 2.7e-13 69_[+1]_10 chrIX:197354-197995 1e-11 11_[-1]_68 chrIV:1016946-1017517 1e-11 32_[+1]_47 chrXVI:860163-860694 1.3e-11 43_[-1]_36 chrXV:226414-226898 1.3e-11 11_[+1]_68 chrX:531491-532256 1.3e-11 47_[-1]_32 chrX:396540-396956 1.3e-11 34_[+1]_45 chrVII:845421-845989 1.3e-11 36_[-1]_43 chrVI:180630-181285 1.3e-11 73_[+1]_6 chrIV:83322-83808 1.3e-11 75_[-1]_4 chrXIII:290537-291158 3e-11 47_[-1]_32 chrVII:401413-401619 3e-11 67_[+1]_12 chrV:487081-487637 3e-11 28_[+1]_51 chrV:176856-177506 3e-11 11_[-1]_68 chrIX:370219-370644 3e-11 79_[-1] chrII:644939-645452 3e-11 65_[-1]_14 chrVIII:475498-475919 1.4e-10 54_[+1]_25 chrIV:1075284-1075769 1.4e-10 2_[+1]_77 chrXV:663466-664200 2.7e-10 35_[+1]_44 chrXIII:586339-586923 2.7e-10 61_[+1]_18 chrXIII:420314-420888 2.7e-10 43_[+1]_36 chrXIII:372181-372668 2.7e-10 77_[+1]_2 chrX:378015-378742 2.7e-10 77_[-1]_2 chrVII:823339-823723 2.7e-10 46_[-1]_33 chrV:438503-438978 2.7e-10 55_[-1]_24 chrXII:875188-875677 4.3e-10 61_[-1]_18 chrIV:359363-359885 4.3e-10 70_[-1]_9 chrVIII:134123-134689 1e-09 8_[-1]_71 chrV:130824-131404 1e-09 24_[+1]_55 chrIV:644912-645382 1e-09 62_[+1]_17 chrIII:168099-168560 1e-09 28_[+1]_51 chrXII:426900-427445 1.4e-09 53_[-1]_26 chrXI:513116-513594 1.4e-09 33_[+1]_46 chrX:355180-355763 1.4e-09 78_[-1]_1 chrX:204554-204979 1.4e-09 62_[-1]_17 chrVII:544388-544874 1.4e-09 2_[+1]_77 chrIX:336092-336631 1.4e-09 44_[+1]_35 chrIV:568645-569382 1.4e-09 44_[-1]_35 chrII:405670-406307 1.4e-09 65_[-1]_14 chrXV:853627-854774 1.8e-09 43_[+1]_36 chrXII:214675-215068 1.8e-09 68_[+1]_11 chrV:311726-312302 1.8e-09 65_[+1]_14 chrXIV:95989-96468 2.6e-09 69_[+1]_10 chrVII:779362-779927 2.6e-09 65_[-1]_14 chrXIII:195929-196306 3e-09 7_[+1]_72 chrXII:92293-93027 3e-09 12_[-1]_67 chrXVI:581834-582421 3.4e-09 29_[-1]_50 chrXIII:480372-480826 3.4e-09 78_[+1]_1 chrX:414759-415247 3.4e-09 57_[-1]_22 chrV:435574-436029 3.4e-09 7_[+1]_72 chrIV:1201519-1202109 3.4e-09 30_[-1]_49 chrIII:151047-151526 3.4e-09 54_[+1]_25 chrXVI:819321-819830 3.8e-09 49_[-1]_30 chrXIV:569634-570084 3.8e-09 64_[+1]_15 chrVII:738892-739536 3.8e-09 3_[-1]_76 chrV:550976-551579 3.8e-09 64_[+1]_15 chrIV:667728-668260 3.8e-09 69_[+1]_10 chrII:326482-327121 3.8e-09 47_[+1]_32 chrII:197230-197852 3.8e-09 48_[-1]_31 chrIV:884255-884639 1.3e-08 68_[-1]_11 chrX:538021-539126 1.9e-08 75_[-1]_4 chrX:233685-234242 2.3e-08 70_[-1]_9 chrXVI:856708-857166 3.7e-08 59_[-1]_20 chrXIII:320953-321329 3.7e-08 62_[+1]_17 chrX:374165-374853 5.7e-08 53_[+1]_26 chrVII:828442-828988 5.7e-08 64_[+1]_15 chrXIII:379054-379632 6.7e-08 16_[+1]_63 chrXI:302728-303243 6.7e-08 60_[-1]_19 chrVII:287087-287699 6.7e-08 13_[+1]_66 chrXV:976378-976629 7.3e-08 12_[-1]_67 chrX:422649-423400 7.3e-08 7_[-1]_72 chrX:390838-391339 7.3e-08 11_[+1]_68 chrXII:374182-374657 7.9e-08 30_[-1]_49 chrV:492195-492579 7.9e-08 21_[+1]_58 chrII:642850-643258 8.6e-08 9_[+1]_70 chrXIV:725670-726581 1.4e-07 65_[+1]_14 chrIV:519650-519914 1.4e-07 66_[-1]_13 chrX:523609-524447 2.3e-07 40_[+1]_39 chrII:266181-266742 2.3e-07 11_[-1]_68 chrII:226967-227383 2.3e-07 3_[-1]_76 chrVIII:62513-63076 3.4e-07 54_[-1]_25 chrXVI:559963-560495 3.6e-07 25_[+1]_54 chrVIII:358194-358789 3.6e-07 43_[+1]_36 chrXVI:810574-810893 3.9e-07 38_[-1]_41 chrXIV:632421-632897 3.9e-07 35_[-1]_44 chrXII:975765-976209 3.9e-07 52_[+1]_27 chrVII:730945-731451 3.9e-07 34_[-1]_45 chrXIII:837745-838330 6.4e-07 1_[-1]_78 chrXVI:689350-689864 6.8e-07 61_[-1]_18 chrV:288157-288788 6.8e-07 27_[+1]_52 chrIII:227751-228231 6.8e-07 73_[-1]_6 chrXV:274464-275039 7.5e-07 44_[-1]_35 chrXVI:744081-744580 7.9e-07 47_[-1]_32 chrVII:1004028-1004434 7.9e-07 78_[-1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMSSGGRATCGAACCSSGGAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DMSSGGRATCGAACCSSGGAC width=21 seqs=94 chrIII:123309-123819 ( 70) GCCGGGACTCGAACCCGGGAC 1 chrIX:197354-197995 ( 12) GCGGGGAGTCGAACCCCGGTC 1 chrIV:1016946-1017517 ( 33) GCGGGGAGTCGAACCCCGGTC 1 chrXVI:860163-860694 ( 44) GCCCGGAATCGAACCGGGGGC 1 chrXV:226414-226898 ( 12) GCCCGGAATCGAACCGGGGGC 1 chrX:531491-532256 ( 48) GCCCGGAATCGAACCGGGGGC 1 chrX:396540-396956 ( 35) GCCCGGAATCGAACCGGGGGC 1 chrVII:845421-845989 ( 37) GCCCGGAATCGAACCGGGGGC 1 chrVI:180630-181285 ( 74) GCCCGGAATCGAACCGGGGGC 1 chrIV:83322-83808 ( 76) GCCCGGAATCGAACCGGGGGC 1 chrXIII:290537-291158 ( 48) ACGGGGAGTCGAACCCCGGTC 1 chrVII:401413-401619 ( 68) ACGGGGAGTCGAACCCCGGTC 1 chrV:487081-487637 ( 29) ACGGGGAGTCGAACCCCGGTC 1 chrV:176856-177506 ( 12) ACGGGGAGTCGAACCCCGGTC 1 chrIX:370219-370644 ( 80) ACGGGGAGTCGAACCCCGGTC 1 chrII:644939-645452 ( 66) ACGGGGAGTCGAACCCCGGTC 1 chrVIII:475498-475919 ( 55) ACCGAGGATCGAACTCGGGAC 1 chrIV:1075284-1075769 ( 3) ACCGAGGATCGAACTCGGGAC 1 chrXV:663466-664200 ( 36) GCCCAGGATCGAACTGGGGAC 1 chrXIII:586339-586923 ( 62) GCCCAGGATCGAACTGGGGAC 1 chrXIII:420314-420888 ( 44) GCCCAGGATCGAACTGGGGAC 1 chrXIII:372181-372668 ( 78) GCCCAGGATCGAACTGGGGAC 1 chrX:378015-378742 ( 78) GCCCAGGATCGAACTGGGGAC 1 chrVII:823339-823723 ( 47) GCCCAGGATCGAACTGGGGAC 1 chrV:438503-438978 ( 56) GCCCAGGATCGAACTGGGGAC 1 chrXII:875188-875677 ( 62) TAGGGGGCTCGAACCCCTGAC 1 chrIV:359363-359885 ( 71) TAGGGGGCTCGAACCCCTGAC 1 chrVIII:134123-134689 ( 9) ACCCGGATTCGAACCGGGGTT 1 chrV:130824-131404 ( 25) ACCCGGATTCGAACCGGGGTT 1 chrIV:644912-645382 ( 63) ACCCGGATTCGAACCGGGGTT 1 chrIII:168099-168560 ( 29) ACCCGGATTCGAACCGGGGTT 1 chrXII:426900-427445 ( 54) ACGGGGAATTGAACCCCGATC 1 chrXI:513116-513594 ( 34) ACGGGGAATTGAACCCCGATC 1 chrX:355180-355763 ( 79) ACGGGGAATTGAACCCCGATC 1 chrX:204554-204979 ( 63) ACGGGGAATTGAACCCCGATC 1 chrVII:544388-544874 ( 3) ACGGGGAATTGAACCCCGATC 1 chrIX:336092-336631 ( 45) ACGGGGAATTGAACCCCGATC 1 chrIV:568645-569382 ( 45) ACGGGGAATTGAACCCCGATC 1 chrII:405670-406307 ( 66) ACGGGGAATTGAACCCCGATC 1 chrXV:853627-854774 ( 44) AACCGGAATCGAACCGATGAC 1 chrXII:214675-215068 ( 69) AACCGGAATCGAACCGATGAC 1 chrV:311726-312302 ( 66) AACCGGAATCGAACCGATGAC 1 chrXIV:95989-96468 ( 70) TACGAGAATCGAACCCGTGTC 1 chrVII:779362-779927 ( 66) TACGAGAATCGAACCCGTGTC 1 chrXIII:195929-196306 ( 8) GCTGGGAATTGAACCCAGGGC 1 chrXII:92293-93027 ( 13) GCTGGGAATTGAACCCAGGGC 1 chrXVI:581834-582421 ( 30) TAGGGGGCTCGAACCCCTAAC 1 chrXIII:480372-480826 ( 79) TAGGGGGCTCGAACCCCTAAC 1 chrX:414759-415247 ( 58) TAGGGGGCTCGAACCCCTAAC 1 chrV:435574-436029 ( 8) TAGGGGGCTCGAACCCCTAAC 1 chrIV:1201519-1202109 ( 31) TAGGGGGCTCGAACCCCTAAC 1 chrIII:151047-151526 ( 55) TAGGGGGCTCGAACCCCTAAC 1 chrXVI:819321-819830 ( 50) TAGCGGGATCGAACCGCTGAT 1 chrXIV:569634-570084 ( 65) TAGCGGGATCGAACCGCTGAT 1 chrVII:738892-739536 ( 4) TAGCGGGATCGAACCGCTGAT 1 chrV:550976-551579 ( 65) TAGCGGGATCGAACCGCTGAT 1 chrIV:667728-668260 ( 70) TAGCGGGATCGAACCGCTGAT 1 chrII:326482-327121 ( 48) ACCGAGGTTCGAACTCGGGAT 1 chrII:197230-197852 ( 49) TAGCGGGATCGAACCGCTGAT 1 chrIV:884255-884639 ( 69) GGTGGGGTTTGAACCCACGAC 1 chrX:538021-539126 ( 76) TACGGGACTCGAACCCGCAGT 1 chrX:233685-234242 ( 71) GCCAGGACTCGAACCTGGAAT 1 chrXVI:856708-857166 ( 60) GTCCGGAATCGAACCGGAGAC 1 chrXIII:320953-321329 ( 63) GTCCGGAATCGAACCGGAGAC 1 chrX:374165-374853 ( 54) GATGGGGGTCGAACCCATAAT 1 chrVII:828442-828988 ( 65) GATGGGGGTCGAACCCATAAT 1 chrXIII:379054-379632 ( 17) GACAGGAATTGAACCTGCAAC 1 chrXI:302728-303243 ( 61) GACAGGAATTGAACCTGCAAC 1 chrVII:287087-287699 ( 14) GACAGGAATTGAACCTGCAAC 1 chrXV:976378-976629 ( 13) GGGGAGGTTCGAACTCTCGAC 1 chrX:422649-423400 ( 8) GGGGAGGTTCGAACTCTCGAC 1 chrX:390838-391339 ( 12) GGGGAGGTTCGAACTCTCGAC 1 chrXII:374182-374657 ( 31) GCCAGGACTTGAACCTGGAAT 1 chrV:492195-492579 ( 22) GCCAGGACTTGAACCTGGAAT 1 chrII:642850-643258 ( 10) ACTCAGGATCGAACTAAGGAC 1 chrXIV:725670-726581 ( 66) TGCGAGGTTCGAACTCGCGCG 1 chrIV:519650-519914 ( 67) TGCGAGGTTCGAACTCGCGCG 1 chrX:523609-524447 ( 41) TGCAGGACTCGAACCTGCGCG 1 chrII:266181-266742 ( 12) AATCGGATTTGAACCGATGAT 1 chrII:226967-227383 ( 4) TGCAGGACTCGAACCTGCGCG 1 chrVIII:62513-63076 ( 55) TCCTAGAATCGAACCAGGGTT 1 chrXVI:559963-560495 ( 26) TCTGTGGATCGAACACAGGAC 1 chrVIII:358194-358789 ( 44) TCTGTGGATCGAACACAGGAC 1 chrXVI:810574-810893 ( 39) AGTGAGGGTTGAACTCACGAT 1 chrXIV:632421-632897 ( 36) AGTGAGGGTTGAACTCACGAT 1 chrXII:975765-976209 ( 53) AGTGAGGGTTGAACTCACGAT 1 chrVII:730945-731451 ( 35) AGTGAGGGTTGAACTCACGAT 1 chrXIII:837745-838330 ( 2) GGGGCGAGTCGAACGCCCGAT 1 chrXVI:689350-689864 ( 62) AGCAGGATTTGAACCAGCGCG 1 chrV:288157-288788 ( 28) AGCAGGATTTGAACCAGCGCG 1 chrIII:227751-228231 ( 74) AGCAGGATTTGAACCAGCGCG 1 chrXV:274464-275039 ( 45) GACAGGATTCGAACCTGCGCA 1 chrXVI:744081-744580 ( 48) TGTCAGAATTGAACTAACGAC 1 chrVII:1004028-1004434 ( 79) TGTCAGAATTGAACTAACGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMSSGGRATCGAACCSSGGAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 40880 bayes= 9.18735 E= 1.0e-311 17 -1320 98 -17 -12 141 2 -387 -1320 135 94 -97 -129 90 144 -487 -23 -414 190 -387 -1320 -1320 241 -1320 91 -1320 114 -1320 71 -24 -24 -87 -1320 -1320 -1320 168 -1320 194 -1320 -17 -1320 -1320 241 -1320 168 -1320 -1320 -1320 168 -1320 -1320 -1320 -1320 241 -1320 -1320 -387 196 -414 -41 -206 144 76 -170 -70 81 125 -329 -387 38 141 -41 -35 -1320 200 -1320 86 -115 -82 -35 -487 181 -134 -29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMSSGGRATCGAACCSSGGAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 94 E= 1.0e-311 0.351064 0.000000 0.372340 0.276596 0.287234 0.500000 0.191489 0.021277 0.000000 0.478723 0.361702 0.159574 0.127660 0.351064 0.510638 0.010638 0.265957 0.010638 0.702128 0.021277 0.000000 0.000000 1.000000 0.000000 0.585106 0.000000 0.414894 0.000000 0.510638 0.159574 0.159574 0.170213 0.000000 0.000000 0.000000 1.000000 0.000000 0.723404 0.000000 0.276596 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.021277 0.734043 0.010638 0.234043 0.074468 0.510638 0.319149 0.095745 0.191489 0.329787 0.446809 0.031915 0.021277 0.244681 0.500000 0.234043 0.244681 0.000000 0.755319 0.000000 0.563830 0.085106 0.106383 0.244681 0.010638 0.659574 0.074468 0.255319 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMSSGGRATCGAACCSSGGAC MEME-1 regular expression -------------------------------------------------------------------------------- [GAT][CA][CG][GC][GA]G[AG]AT[CT]GAAC[CT][CG][GC][GCT][GA][AT][CT] -------------------------------------------------------------------------------- Time 393.16 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCTYWAMCCACTRRRCYAHVVVV MEME-2 width = 24 sites = 77 llr = 1098 E-value = 1.0e-149 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCTYWAMCCACTRRRCYAHVVVV MEME-2 Description -------------------------------------------------------------------------------- Simplified A 22111356:2a::444::a43433 pos.-specific C 54623114a6:8:22:a6:33232 probability G 44121:2::1:::346::::3334 matrix T ::25562::::2a1:::4:31211 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * ** * * Relative 1.4 * *** * * Entropy 1.2 * *** **** (20.6 bits) 1.0 ** *** **** 0.7 ** ****** ***** 0.5 *** ****** ***** * 0.2 ********************* ** 0.0 ------------------------ Multilevel CGCTTTAACCACTAGGCCAACAAG consensus GCTCCATC A GAA T CAGGA sequence C TG CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCCACTRRRCYAHVVVV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrIV:1150708-1151159 + 33 5.14e-11 TAGCAGGCAT CGCCTTAACCACTCGGCCACTGGG ACTGAAACAC chrXI:578638-579348 - 24 6.15e-10 AAAAGCCGAA CGCTCTACCAACTGAGCTAACAAG GATGAGTTCT chrVII:115322-115729 - 15 6.15e-10 AAAAGCCGAA CGCTCTACCAACTGAGCTAACAAG GATGAGTTCT chrIV:359363-359885 - 5 6.15e-10 AAAAGCCGAA CGCTCTACCAACTGAGCTAACAAG GATG chrXVI:819321-819830 - 6 7.49e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGA CCATT chrXIV:602069-602555 - 52 7.49e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGA CCATTGTTAT chrXII:734584-735009 - 58 7.49e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGA CCAAACTTTG chrIX:183286-183734 + 28 7.49e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGA CCAGGAATTT chrII:197230-197852 - 5 7.49e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGA CCTT chrXVI:689350-689864 - 10 9.09e-10 TCAAGTCTGT CGCCTTAACCACTCGGCCATAGTG CCCAAAATA chrIII:227751-228231 - 3 9.09e-10 TCGAGTCTCT CGCCTTAACCACTCGGCCATAGTG CC chrXIII:258990-259441 + 49 1.10e-09 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTG CCATACTAAC chrXII:167766-168258 + 38 1.10e-09 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTG CCATATGACT chrIV:1305409-1305871 - 42 1.10e-09 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTG CCTTAATTTG chrX:233685-234242 - 28 3.19e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACGAGG AACAAGAATA chrV:492195-492579 + 62 3.19e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACGAGG AATAGGATGT chrXVI:856708-857166 - 17 3.76e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACACGC CCGAATCTTG chrXI:219648-220120 - 63 3.76e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACACGC CCTATTTACT chrXII:592337-592820 + 66 6.09e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAAACTC CCATTGTATG chrX:617683-618233 - 13 6.09e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAAACTC CCATTGTTTG chrXI:74390-74879 - 42 7.12e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCATGGAG TCTAATTGCT chrIII:127501-127901 - 67 7.12e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCATGGAG TCATTTTATC chrXII:962795-963294 + 36 9.63e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAACCCT CCGTCGATAA chrXI:83993-84446 - 41 9.63e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAACCCT CCATACAAAT chrX:424265-424720 + 48 9.63e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAACCCT CCATCTTATT chrIV:519650-519914 - 13 9.63e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAACCCT CCGTAAAATC chrXV:113489-114091 - 64 1.97e-08 ACTAGTGTGG CGCCTTACCAACTTGGCCATAGAA GCTAAATCTC chrX:414759-415247 - 15 1.97e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAG GCTAATTCGT chrVI:226552-226982 + 18 1.97e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAG GCATTTTAAT chrV:435574-436029 + 48 1.97e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAG GCTCTTATTG chrXIV:374669-375130 - 22 3.79e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAGTCC GCTTATTTTT chrVIII:237745-238138 + 23 6.97e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAATCC GCTTACTATT chrVII:440505-441104 + 28 6.97e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAATCC GCATATATTT chrII:36229-36629 - 21 6.97e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAATCC GCTTACAACT chrXIII:168206-169356 - 66 1.36e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACCGAG AGTGACTATT chrX:542758-543372 + 4 1.36e-07 GCG CCTTAAACCAACTTGGCTACCGAG AGTATTTAAT chrX:353973-354479 - 70 1.36e-07 TCTTGCG CCTTAAACCAACTTGGCTACCGAG AGTGATAAAT chrVI:210437-210931 + 48 1.36e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACCGAG AGTCGTTTTT chrXI:307934-308538 + 6 1.68e-07 CAGAT GCCATAACCGACTAGACCACGAAA CCACTTAATT chrX:378015-378742 - 34 1.68e-07 TTAAGCAGAT GCCATAACCGACTAGACCACGAAA CCTATTAATT chrVII:823339-823723 - 3 1.68e-07 TTAAGCAGAT GCCATAACCGACTAGACCACGAAA CC chrV:438503-438978 - 12 1.68e-07 TTAAGCAGAT GCCATAACCGACTAGACCACGAAA CCTAATTTGT chrVII:205290-205815 - 21 2.51e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAACAA CCACTTATTT chrI:138952-139351 - 53 3.05e-07 CCCAAAGCGA GAATCATACCACTAGACCACACGC CCGTACTAAT chrXVI:860163-860694 - 3 4.02e-07 TGGCAACGTT GGATTTTACCACTAAACCACTTGC GC chrXV:226414-226898 + 50 4.02e-07 TGGCAACGTT GGATTTTACCACTAAACCACTTGC GCTGAATTTC chrX:531491-532256 - 7 4.02e-07 TGGCAACGTT GGATTTTACCACTAAACCACTTGC GCTCAC chrX:396540-396956 + 73 4.02e-07 TGGCAACGTT GGATTTTACCACTAAACCACTTGC GCTT chrIV:83322-83808 - 35 4.02e-07 TGGCAACGTT GGATTTTACCACTAAACCACTTGC GCTAAGTGAA chrXIII:572646-573260 + 27 4.40e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACTGAA GCTATCTGTT chrX:390838-391339 + 52 4.40e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACTGAA GCACTATTTC chrXVI:744081-744580 - 6 4.81e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAAGGAG GCTTT chrXVI:75472-76832 - 55 4.81e-07 AAAGCAAAAT GAACTGAACCACTAAGCCAACAAC AGAAATACAA chrVII:1004028-1004434 - 37 4.81e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAAGGAG GCAAACCCTT chrVII:661500-661954 - 74 4.81e-07 GCA ACGCTCTACCACTAAGCTAAGGAG GCAAATTTTT chrXII:426900-427445 - 12 5.72e-07 GACAAGCGCC CATTCTGACCATTAAACTATCACG GATAAGAAAC chrXI:513116-513594 + 73 5.72e-07 GACAAGCGCC CATTCTGACCATTAAACTATCACG GAAC chrX:374165-374853 + 11 5.72e-07 GACAAGCGCC CATTCTGACCATTAAACTATCACG GAAGAAACAA chrX:355180-355763 - 37 5.72e-07 GACAAGCGCC CATTCTGACCATTAAACTATCACG GAAGAAACAA chrX:204554-204979 - 21 5.72e-07 GACAAGCGCC CATTCTGACCATTAAACTATCACG GATTTTTATG chrVII:779362-779927 - 24 5.72e-07 GGAAGGGTGG GATGATAACCACTACACTAACCGC CCGGGGTTAA chrVII:544388-544874 + 42 5.72e-07 GACAAGCGCC CATTCTGACCATTAAACTATCACG GAAGAAATAT chrIV:568645-569382 - 3 5.72e-07 GACAAGCGCC CATTCTGACCATTAAACTATCACG GA chrII:405670-406307 - 24 5.72e-07 GACAAGCGCC CATTCTGACCATTAAACTATCACG GAAGAAACAA chrXIII:808062-808548 + 37 1.09e-06 CAGAACCGAA AGTGATAACCACTACACTATAGGA CCTTTTTCTT chrXII:448510-448959 + 12 1.09e-06 CAAAACCGAA AGTGATAACCACTACACTATAGGA CCGGAACTTC chrIV:802554-803045 + 28 1.09e-06 CAAAACCGAA AGTGATAACCACTACACTATAGGA CCGACAATTC chrIII:168099-168560 + 68 1.09e-06 CAAAACCGAA AGTGATAACCACTACACTATAGGA CCAGGACTT chrXIV:6617-6996 + 19 1.36e-06 CCCACTCGTT ACCCTGCCCCACTCAACCATACCA CTCCCAACCA chrX:538021-539126 - 34 1.36e-06 TAGGAGGGAG ACGCGTTACCATTACGCCAACGGA ACCAACTTGG chrIII:316250-316593 - 45 1.36e-06 CCCACTCGTT ACCCTGCCCCACTCAACCATACCA CTCCCAACCA chrXVI:338559-339281 + 24 1.69e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCACGGCG CTGCTAAATC chrX:517640-518102 + 38 1.69e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCACGGCG CTTAACTTTT chrV:130824-131404 + 64 1.69e-06 CAAAACCGAA AGTGATAACCACTACACTATAAAA CCTCTTAATT chrII:350599-351060 - 50 1.69e-06 CAAAACCGAA AGTGATAACCACTACACTATAAAA CCCTTTTATT chrXIV:631675-632136 + 37 5.72e-06 CCCTAAGCGA GAATCATACCTCTAGACCACACGC CCGGTAGAAG chrII:642850-643258 + 49 7.76e-06 TTGCAATCTG CTGCGCTACCACTGCGCCATACGA GCTTTCTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCCACTRRRCYAHVVVV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1150708-1151159 5.1e-11 32_[+2]_44 chrXI:578638-579348 6.2e-10 23_[-2]_53 chrVII:115322-115729 6.2e-10 14_[-2]_62 chrIV:359363-359885 6.2e-10 4_[-2]_72 chrXVI:819321-819830 7.5e-10 5_[-2]_71 chrXIV:602069-602555 7.5e-10 51_[-2]_25 chrXII:734584-735009 7.5e-10 57_[-2]_19 chrIX:183286-183734 7.5e-10 27_[+2]_49 chrII:197230-197852 7.5e-10 4_[-2]_72 chrXVI:689350-689864 9.1e-10 9_[-2]_67 chrIII:227751-228231 9.1e-10 2_[-2]_74 chrXIII:258990-259441 1.1e-09 48_[+2]_28 chrXII:167766-168258 1.1e-09 37_[+2]_39 chrIV:1305409-1305871 1.1e-09 41_[-2]_35 chrX:233685-234242 3.2e-09 27_[-2]_49 chrV:492195-492579 3.2e-09 61_[+2]_15 chrXVI:856708-857166 3.8e-09 16_[-2]_60 chrXI:219648-220120 3.8e-09 62_[-2]_14 chrXII:592337-592820 6.1e-09 65_[+2]_11 chrX:617683-618233 6.1e-09 12_[-2]_64 chrXI:74390-74879 7.1e-09 41_[-2]_35 chrIII:127501-127901 7.1e-09 66_[-2]_10 chrXII:962795-963294 9.6e-09 35_[+2]_41 chrXI:83993-84446 9.6e-09 40_[-2]_36 chrX:424265-424720 9.6e-09 47_[+2]_29 chrIV:519650-519914 9.6e-09 12_[-2]_64 chrXV:113489-114091 2e-08 63_[-2]_13 chrX:414759-415247 2e-08 14_[-2]_62 chrVI:226552-226982 2e-08 17_[+2]_59 chrV:435574-436029 2e-08 47_[+2]_29 chrXIV:374669-375130 3.8e-08 21_[-2]_55 chrVIII:237745-238138 7e-08 22_[+2]_54 chrVII:440505-441104 7e-08 27_[+2]_49 chrII:36229-36629 7e-08 20_[-2]_56 chrXIII:168206-169356 1.4e-07 65_[-2]_11 chrX:542758-543372 1.4e-07 3_[+2]_73 chrX:353973-354479 1.4e-07 69_[-2]_7 chrVI:210437-210931 1.4e-07 47_[+2]_29 chrXI:307934-308538 1.7e-07 5_[+2]_71 chrX:378015-378742 1.7e-07 33_[-2]_43 chrVII:823339-823723 1.7e-07 2_[-2]_74 chrV:438503-438978 1.7e-07 11_[-2]_65 chrVII:205290-205815 2.5e-07 20_[-2]_56 chrI:138952-139351 3e-07 52_[-2]_24 chrXVI:860163-860694 4e-07 2_[-2]_74 chrXV:226414-226898 4e-07 49_[+2]_27 chrX:531491-532256 4e-07 6_[-2]_70 chrX:396540-396956 4e-07 72_[+2]_4 chrIV:83322-83808 4e-07 34_[-2]_42 chrXIII:572646-573260 4.4e-07 26_[+2]_50 chrX:390838-391339 4.4e-07 51_[+2]_25 chrXVI:744081-744580 4.8e-07 5_[-2]_71 chrXVI:75472-76832 4.8e-07 54_[-2]_22 chrVII:1004028-1004434 4.8e-07 36_[-2]_40 chrVII:661500-661954 4.8e-07 73_[-2]_3 chrXII:426900-427445 5.7e-07 11_[-2]_65 chrXI:513116-513594 5.7e-07 72_[+2]_4 chrX:374165-374853 5.7e-07 10_[+2]_66 chrX:355180-355763 5.7e-07 36_[-2]_40 chrX:204554-204979 5.7e-07 20_[-2]_56 chrVII:779362-779927 5.7e-07 23_[-2]_53 chrVII:544388-544874 5.7e-07 41_[+2]_35 chrIV:568645-569382 5.7e-07 2_[-2]_74 chrII:405670-406307 5.7e-07 23_[-2]_53 chrXIII:808062-808548 1.1e-06 36_[+2]_40 chrXII:448510-448959 1.1e-06 11_[+2]_65 chrIV:802554-803045 1.1e-06 27_[+2]_49 chrIII:168099-168560 1.1e-06 67_[+2]_9 chrXIV:6617-6996 1.4e-06 18_[+2]_58 chrX:538021-539126 1.4e-06 33_[-2]_43 chrIII:316250-316593 1.4e-06 44_[-2]_32 chrXVI:338559-339281 1.7e-06 23_[+2]_53 chrX:517640-518102 1.7e-06 37_[+2]_39 chrV:130824-131404 1.7e-06 63_[+2]_13 chrII:350599-351060 1.7e-06 49_[-2]_27 chrXIV:631675-632136 5.7e-06 36_[+2]_40 chrII:642850-643258 7.8e-06 48_[+2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCCACTRRRCYAHVVVV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCTYWAMCCACTRRRCYAHVVVV width=24 seqs=77 chrIV:1150708-1151159 ( 33) CGCCTTAACCACTCGGCCACTGGG 1 chrXI:578638-579348 ( 24) CGCTCTACCAACTGAGCTAACAAG 1 chrVII:115322-115729 ( 15) CGCTCTACCAACTGAGCTAACAAG 1 chrIV:359363-359885 ( 5) CGCTCTACCAACTGAGCTAACAAG 1 chrXVI:819321-819830 ( 6) GCCTTAACCAACTGGGCCAAGAGA 1 chrXIV:602069-602555 ( 52) GCCTTAACCAACTGGGCCAAGAGA 1 chrXII:734584-735009 ( 58) GCCTTAACCAACTGGGCCAAGAGA 1 chrIX:183286-183734 ( 28) GCCTTAACCAACTGGGCCAAGAGA 1 chrII:197230-197852 ( 5) GCCTTAACCAACTGGGCCAAGAGA 1 chrXVI:689350-689864 ( 10) CGCCTTAACCACTCGGCCATAGTG 1 chrIII:227751-228231 ( 3) CGCCTTAACCACTCGGCCATAGTG 1 chrXIII:258990-259441 ( 49) CGCCTTAACCACTCGGCCAAGTTG 1 chrXII:167766-168258 ( 38) CGCCTTAACCACTCGGCCAAGTTG 1 chrIV:1305409-1305871 ( 42) CGCCTTAACCACTCGGCCAAGTTG 1 chrX:233685-234242 ( 28) CGCCGTGACCATTGGGCCACGAGG 1 chrV:492195-492579 ( 62) CGCCGTGACCATTGGGCCACGAGG 1 chrXVI:856708-857166 ( 17) CGCGCTACCGACTACGCCACACGC 1 chrXI:219648-220120 ( 63) CGCGCTACCGACTACGCCACACGC 1 chrXII:592337-592820 ( 66) GCCTTAAACCACTCGGCCAAACTC 1 chrX:617683-618233 ( 13) GCCTTAAACCACTCGGCCAAACTC 1 chrXI:74390-74879 ( 42) GCCTTAACCAACTTGGCCATGGAG 1 chrIII:127501-127901 ( 67) GCCTTAACCAACTTGGCCATGGAG 1 chrXII:962795-963294 ( 36) GCCTTAGACCACTCGGCCAACCCT 1 chrXI:83993-84446 ( 41) GCCTTAGACCACTCGGCCAACCCT 1 chrX:424265-424720 ( 48) GCCTTAGACCACTCGGCCAACCCT 1 chrIV:519650-519914 ( 13) GCCTTAGACCACTCGGCCAACCCT 1 chrXV:113489-114091 ( 64) CGCCTTACCAACTTGGCCATAGAA 1 chrX:414759-415247 ( 15) CGCGCTACCGATTGCGCCAACAAG 1 chrVI:226552-226982 ( 18) CGCGCTACCGATTGCGCCAACAAG 1 chrV:435574-436029 ( 48) CGCGCTACCGATTGCGCCAACAAG 1 chrXIV:374669-375130 ( 22) CGCTCTCCCAACTGAGCTAAGTCC 1 chrVIII:237745-238138 ( 23) CGCTCTCCCAACTGAGCTAAATCC 1 chrVII:440505-441104 ( 28) CGCTCTCCCAACTGAGCTAAATCC 1 chrII:36229-36629 ( 21) CGCTCTCCCAACTGAGCTAAATCC 1 chrXIII:168206-169356 ( 66) CCTTAAACCAACTTGGCTACCGAG 1 chrX:542758-543372 ( 4) CCTTAAACCAACTTGGCTACCGAG 1 chrX:353973-354479 ( 70) CCTTAAACCAACTTGGCTACCGAG 1 chrVI:210437-210931 ( 48) CCTTAAACCAACTTGGCTACCGAG 1 chrXI:307934-308538 ( 6) GCCATAACCGACTAGACCACGAAA 1 chrX:378015-378742 ( 34) GCCATAACCGACTAGACCACGAAA 1 chrVII:823339-823723 ( 3) GCCATAACCGACTAGACCACGAAA 1 chrV:438503-438978 ( 12) GCCATAACCGACTAGACCACGAAA 1 chrVII:205290-205815 ( 21) GCCTTAGACCGCTCGGCCAAACAA 1 chrI:138952-139351 ( 53) GAATCATACCACTAGACCACACGC 1 chrXVI:860163-860694 ( 3) GGATTTTACCACTAAACCACTTGC 1 chrXV:226414-226898 ( 50) GGATTTTACCACTAAACCACTTGC 1 chrX:531491-532256 ( 7) GGATTTTACCACTAAACCACTTGC 1 chrX:396540-396956 ( 73) GGATTTTACCACTAAACCACTTGC 1 chrIV:83322-83808 ( 35) GGATTTTACCACTAAACCACTTGC 1 chrXIII:572646-573260 ( 27) CGCTCTTCCTACTGAGCTACTGAA 1 chrX:390838-391339 ( 52) CGCTCTTCCTACTGAGCTACTGAA 1 chrXVI:744081-744580 ( 6) ACGCTCTACCACTAAGCTAAGGAG 1 chrXVI:75472-76832 ( 55) GAACTGAACCACTAAGCCAACAAC 1 chrVII:1004028-1004434 ( 37) ACGCTCTACCACTAAGCTAAGGAG 1 chrVII:661500-661954 ( 74) ACGCTCTACCACTAAGCTAAGGAG 1 chrXII:426900-427445 ( 12) CATTCTGACCATTAAACTATCACG 1 chrXI:513116-513594 ( 73) CATTCTGACCATTAAACTATCACG 1 chrX:374165-374853 ( 11) CATTCTGACCATTAAACTATCACG 1 chrX:355180-355763 ( 37) CATTCTGACCATTAAACTATCACG 1 chrX:204554-204979 ( 21) CATTCTGACCATTAAACTATCACG 1 chrVII:779362-779927 ( 24) GATGATAACCACTACACTAACCGC 1 chrVII:544388-544874 ( 42) CATTCTGACCATTAAACTATCACG 1 chrIV:568645-569382 ( 3) CATTCTGACCATTAAACTATCACG 1 chrII:405670-406307 ( 24) CATTCTGACCATTAAACTATCACG 1 chrXIII:808062-808548 ( 37) AGTGATAACCACTACACTATAGGA 1 chrXII:448510-448959 ( 12) AGTGATAACCACTACACTATAGGA 1 chrIV:802554-803045 ( 28) AGTGATAACCACTACACTATAGGA 1 chrIII:168099-168560 ( 68) AGTGATAACCACTACACTATAGGA 1 chrXIV:6617-6996 ( 19) ACCCTGCCCCACTCAACCATACCA 1 chrX:538021-539126 ( 34) ACGCGTTACCATTACGCCAACGGA 1 chrIII:316250-316593 ( 45) ACCCTGCCCCACTCAACCATACCA 1 chrXVI:338559-339281 ( 24) GCGCGCTTCCACTGCGCCACGGCG 1 chrX:517640-518102 ( 38) GCGCGCTTCCACTGCGCCACGGCG 1 chrV:130824-131404 ( 64) AGTGATAACCACTACACTATAAAA 1 chrII:350599-351060 ( 50) AGTGATAACCACTACACTATAAAA 1 chrXIV:631675-632136 ( 37) GAATCATACCTCTAGACCACACGC 1 chrII:642850-643258 ( 49) CTGCGCTACCACTGCGCCATACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCCACTRRRCYAHVVVV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 39347 bayes= 10.4453 E= 1.0e-149 -100 131 100 -1291 -100 105 123 -458 -158 157 -105 -34 -258 39 -27 81 -113 73 -127 58 0 -127 -227 87 74 -127 5 -58 84 114 -1291 -358 -1291 241 -1291 -1291 -34 170 -69 -358 164 -1291 -386 -458 -1291 212 -1291 -78 -1291 -1291 -1291 168 46 5 60 -178 22 14 119 -1291 22 -1291 176 -1291 -1291 241 -1291 -1291 -1291 167 -1291 37 168 -1291 -1291 -1291 37 73 -1291 -13 -13 79 60 -158 22 5 60 -100 12 46 73 -178 -6 23 119 -258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCCACTRRRCYAHVVVV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 77 E= 1.0e-149 0.155844 0.467532 0.376623 0.000000 0.155844 0.389610 0.441558 0.012987 0.103896 0.558442 0.090909 0.246753 0.051948 0.246753 0.155844 0.545455 0.142857 0.311688 0.077922 0.467532 0.311688 0.077922 0.038961 0.571429 0.519481 0.077922 0.194805 0.207792 0.558442 0.415584 0.000000 0.025974 0.000000 1.000000 0.000000 0.000000 0.246753 0.610390 0.116883 0.025974 0.974026 0.000000 0.012987 0.012987 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 0.000000 1.000000 0.428571 0.194805 0.285714 0.090909 0.363636 0.207792 0.428571 0.000000 0.363636 0.000000 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.597403 0.000000 0.402597 1.000000 0.000000 0.000000 0.000000 0.402597 0.311688 0.000000 0.285714 0.285714 0.324675 0.285714 0.103896 0.363636 0.194805 0.285714 0.155844 0.337662 0.259740 0.311688 0.090909 0.298701 0.220779 0.428571 0.051948 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCCACTRRRCYAHVVVV MEME-2 regular expression -------------------------------------------------------------------------------- [CG][GC][CT][TC][TC][TA][AT][AC]C[CA]ACT[AG][GAC][GA]C[CT]A[ACT][CAG][AG][AGC][GAC] -------------------------------------------------------------------------------- Time 850.11 secs. ******************************************************************************** ******************************************************************************** MOTIF CACCCAYRCACCACACCCASA MEME-3 width = 21 sites = 22 llr = 410 E-value = 2.7e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACCCAYRCACCACACCCASA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 18:1:8:6:9::619:117:7 pos.-specific C 9189a:5:9:8a191a88161 probability G :1:::114::::1:::::132 matrix T ::2::13::11:1:::111:: bits 2.4 * 2.2 * * * 1.9 * * * * * 1.7 * *** * * * * Relative 1.4 * *** * ** * * Entropy 1.2 * *** * ** ***** (26.9 bits) 1.0 ***** **** ***** * 0.7 ************ ***** * 0.5 ************ ******** 0.2 ********************* 0.0 --------------------- Multilevel CACCCACACACCACACCCACA consensus TG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCAYRCACCACACCCASA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:5450-5662 + 38 5.27e-14 TATACACCCA CACCCACACACCACACCCACA CCCACACACC chrXI:666613-666795 - 31 5.27e-14 ACACACCACA CACCCACACACCACACCCACA CACCCACACC chrVIII:562330-562593 - 46 5.27e-14 CACACACCCA CACCCACACACCACACCCACA CTTTTCACAT chrIV:12-240 + 43 5.27e-14 ACCACACCCA CACCCACACACCACACCCACA CCCACACACC chrXI:2-184 + 6 3.42e-12 CACCA CACCCACACACCACACCCACT ACTCTAACCC chrXIV:783715-784323 - 72 1.05e-11 CCCACACA CCCACACACACCACACCCACA CACTACCCTA chrIII:70-606 + 27 1.05e-11 CACACCCACA CCCACACACACCACACCCACA CCACACCCAC chrX:545425-545769 - 1 2.95e-10 AAAAGACAGC CACCCATGCACCGCACTCGCA chrX:391808-392116 + 70 6.48e-10 GCAACGAGGT CGCACACGCCCCACACCCAGA CCTCCCTGCG chrXV:639174-639473 - 35 1.04e-09 ACTACTTTTA CACCCGTACACCACACATACA ACCGTACGAC chrVII:291590-291953 + 76 1.14e-09 CATGTTAAAG AACCCACACACCACACGCGCG AGAA chrXV:216277-216713 + 31 2.58e-09 CGCCTTCCTC AACCCAGGCACCGCCCCCAGG TAACCGTGCG chrVII:371227-371524 + 31 4.32e-09 AAAATACCGG CACCCATGCACCTCACACCGC CGCACGCGAG chrIV:411238-411690 + 37 7.70e-09 ACACCCCGGG CACCCAAAGTCCCCACCCACA CCACCAATAC chrIII:163463-163903 - 5 1.15e-08 TAAATTACCG CACCCACGCACCCAACCGCGG CTGT chrVII:856735-857003 - 36 1.24e-08 TGAGGGTACC CGCCCATACACCGCACCAATG GAACTAGCAG chrI:181122-181490 - 66 2.29e-08 AGAGTATATG CATCCACGAAACACACCCTCA TTGGTATAAT chrVIII:505802-506236 - 23 3.30e-08 GACAATTATG CATCCATACATTTCACCCAGA CATTTTGTGT chrXI:382175-382459 + 39 6.69e-08 GCTGCTGTTG CATCCGGACATCACACCCAAC ACAAAACCCC chrII:165055-165438 + 25 1.07e-07 GCTGATAATT ACCCCTTGCAGCAAACCCAGA GCCCTATTAC chrXIV:602069-602555 - 13 1.80e-07 ATCTGTTTTT CACCCTCCCTCCACACTATCA AACCAACGTC chrI:81910-82280 - 56 2.04e-07 ACTGTTGGTA CATCCGTGCACCTCCGCTAGA TGAGGTGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCAYRCACCACACCCASA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:5450-5662 5.3e-14 37_[+3]_42 chrXI:666613-666795 5.3e-14 30_[-3]_49 chrVIII:562330-562593 5.3e-14 45_[-3]_34 chrIV:12-240 5.3e-14 42_[+3]_37 chrXI:2-184 3.4e-12 5_[+3]_74 chrXIV:783715-784323 1.1e-11 71_[-3]_8 chrIII:70-606 1.1e-11 26_[+3]_53 chrX:545425-545769 3e-10 [-3]_79 chrX:391808-392116 6.5e-10 69_[+3]_10 chrXV:639174-639473 1e-09 34_[-3]_45 chrVII:291590-291953 1.1e-09 75_[+3]_4 chrXV:216277-216713 2.6e-09 30_[+3]_49 chrVII:371227-371524 4.3e-09 30_[+3]_49 chrIV:411238-411690 7.7e-09 36_[+3]_43 chrIII:163463-163903 1.1e-08 4_[-3]_75 chrVII:856735-857003 1.2e-08 35_[-3]_44 chrI:181122-181490 2.3e-08 65_[-3]_14 chrVIII:505802-506236 3.3e-08 22_[-3]_57 chrXI:382175-382459 6.7e-08 38_[+3]_41 chrII:165055-165438 1.1e-07 24_[+3]_55 chrXIV:602069-602555 1.8e-07 12_[-3]_67 chrI:81910-82280 2e-07 55_[-3]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCAYRCACCACACCCASA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACCCAYRCACCACACCCASA width=21 seqs=22 chrXIII:5450-5662 ( 38) CACCCACACACCACACCCACA 1 chrXI:666613-666795 ( 31) CACCCACACACCACACCCACA 1 chrVIII:562330-562593 ( 46) CACCCACACACCACACCCACA 1 chrIV:12-240 ( 43) CACCCACACACCACACCCACA 1 chrXI:2-184 ( 6) CACCCACACACCACACCCACT 1 chrXIV:783715-784323 ( 72) CCCACACACACCACACCCACA 1 chrIII:70-606 ( 27) CCCACACACACCACACCCACA 1 chrX:545425-545769 ( 1) CACCCATGCACCGCACTCGCA 1 chrX:391808-392116 ( 70) CGCACACGCCCCACACCCAGA 1 chrXV:639174-639473 ( 35) CACCCGTACACCACACATACA 1 chrVII:291590-291953 ( 76) AACCCACACACCACACGCGCG 1 chrXV:216277-216713 ( 31) AACCCAGGCACCGCCCCCAGG 1 chrVII:371227-371524 ( 31) CACCCATGCACCTCACACCGC 1 chrIV:411238-411690 ( 37) CACCCAAAGTCCCCACCCACA 1 chrIII:163463-163903 ( 5) CACCCACGCACCCAACCGCGG 1 chrVII:856735-857003 ( 36) CGCCCATACACCGCACCAATG 1 chrI:181122-181490 ( 66) CATCCACGAAACACACCCTCA 1 chrVIII:505802-506236 ( 23) CATCCATACATTTCACCCAGA 1 chrXI:382175-382459 ( 39) CATCCGGACATCACACCCAAC 1 chrII:165055-165438 ( 25) ACCCCTTGCAGCAAACCCAGA 1 chrXIV:602069-602555 ( 13) CACCCTCCCTCCACACTATCA 1 chrI:81910-82280 ( 56) CATCCGTGCACCTCCGCTAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCAYRCACCACACCCASA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 40880 bayes= 11.2142 E= 2.7e-048 -119 220 -1110 -1110 131 -47 -105 -1110 -1110 212 -1110 -78 -119 220 -1110 -1110 -1110 241 -1110 -1110 131 -1110 -47 -178 -277 153 -105 3 92 -205 95 -1110 -277 227 -205 -1110 147 -205 -1110 -178 -277 212 -205 -178 -1110 234 -1110 -277 103 -105 -47 -119 -178 227 -1110 -1110 154 -105 -1110 -1110 -1110 234 -205 -1110 -178 204 -205 -178 -178 204 -205 -178 122 -105 -105 -178 -277 165 76 -277 113 -105 -5 -277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCAYRCACCACACCCASA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 22 E= 2.7e-048 0.136364 0.863636 0.000000 0.000000 0.772727 0.136364 0.090909 0.000000 0.000000 0.818182 0.000000 0.181818 0.136364 0.863636 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.772727 0.000000 0.136364 0.090909 0.045455 0.545455 0.090909 0.318182 0.590909 0.045455 0.363636 0.000000 0.045455 0.909091 0.045455 0.000000 0.863636 0.045455 0.000000 0.090909 0.045455 0.818182 0.045455 0.090909 0.000000 0.954545 0.000000 0.045455 0.636364 0.090909 0.136364 0.136364 0.090909 0.909091 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.954545 0.045455 0.000000 0.090909 0.772727 0.045455 0.090909 0.090909 0.772727 0.045455 0.090909 0.727273 0.090909 0.090909 0.090909 0.045455 0.590909 0.318182 0.045455 0.681818 0.090909 0.181818 0.045455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCAYRCACCACACCCASA MEME-3 regular expression -------------------------------------------------------------------------------- CACCCA[CT][AG]CACCACACCCA[CG]A -------------------------------------------------------------------------------- Time 1274.51 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71736-73252 3.37e-01 100 chrI:81910-82280 3.25e-04 55_[-3(2.04e-07)]_24 chrI:138952-139351 1.26e-04 52_[-2(3.05e-07)]_24 chrI:139517-139736 1.28e-01 100 chrI:166168-166591 9.49e-01 100 chrI:181122-181490 1.06e-04 65_[-3(2.29e-08)]_14 chrI:182202-183189 2.95e-01 100 chrII:9453-10037 9.59e-01 100 chrII:36229-36629 7.10e-05 20_[-2(6.97e-08)]_56 chrII:44956-45355 4.38e-01 100 chrII:59858-61461 8.17e-01 100 chrII:87915-88581 7.33e-01 100 chrII:89664-90333 1.98e-01 100 chrII:165055-165438 6.68e-05 24_[+3(1.07e-07)]_55 chrII:167730-168214 9.98e-01 100 chrII:181314-181658 2.17e-01 100 chrII:197230-197852 8.98e-12 4_[-2(7.49e-10)]_20_[-1(3.81e-09)]_\ 31 chrII:226967-227383 2.82e-04 3_[-1(2.34e-07)]_76 chrII:256356-257953 7.80e-02 100 chrII:266181-266742 1.18e-04 11_[-1(2.34e-07)]_68 chrII:326482-327121 4.90e-06 47_[+1(3.81e-09)]_32 chrII:332192-333061 3.93e-01 100 chrII:347407-348157 1.44e-01 100 chrII:350599-351060 1.75e-03 49_[-2(1.69e-06)]_27 chrII:405670-406307 1.17e-09 23_[-2(5.72e-07)]_18_[-1(1.37e-09)]_\ 14 chrII:415491-415889 1.41e-01 100 chrII:476452-476681 8.72e-01 100 chrII:476892-477744 4.76e-01 100 chrII:592347-593767 9.04e-01 100 chrII:604036-607109 3.67e-01 100 chrII:642850-643258 2.30e-06 9_[+1(8.57e-08)]_18_[+2(7.76e-06)]_\ 28 chrII:644939-645452 1.33e-07 65_[-1(2.97e-11)]_14 chrIII:70-606 4.70e-08 1_[+3(4.52e-06)]_4_[+3(1.05e-11)]_\ 23_[+3(1.91e-06)]_9 chrIII:13991-15655 8.61e-01 100 chrIII:15909-16896 4.91e-02 29_[-1(2.23e-05)]_50 chrIII:30572-31149 9.90e-01 100 chrIII:58684-59359 6.17e-01 100 chrIII:81826-82673 7.92e-01 100 chrIII:90848-91198 7.51e-01 100 chrIII:107221-107831 3.49e-01 100 chrIII:123309-123819 2.46e-09 69_[+1(2.69e-13)]_10 chrIII:127501-127901 1.13e-04 66_[-2(7.12e-09)]_10 chrIII:141986-142962 1.28e-01 100 chrIII:149538-150213 9.39e-01 100 chrIII:151047-151526 2.26e-05 54_[+1(3.37e-09)]_25 chrIII:163463-163903 3.84e-05 4_[-3(1.15e-08)]_75 chrIII:168099-168560 9.23e-10 28_[+1(1.04e-09)]_18_[+2(1.09e-06)]_\ 9 chrIII:177075-178784 7.94e-01 100 chrIII:227751-228231 1.98e-09 2_[-2(9.09e-10)]_47_[-1(6.78e-07)]_\ 6 chrIII:262706-263104 9.82e-01 100 chrIII:295295-295904 6.92e-01 100 chrIII:308104-309360 4.54e-01 100 chrIII:314909-316045 9.98e-01 100 chrIII:316250-316593 2.05e-04 44_[-2(1.36e-06)]_32 chrIV:12-240 6.08e-10 42_[+3(5.27e-14)]_[+3(4.45e-07)]_16 chrIV:83322-83808 1.24e-11 34_[-2(4.02e-07)]_17_[-1(1.27e-11)]_\ 4 chrIV:117143-117908 1.59e-02 29_[+3(8.28e-05)]_50 chrIV:129799-131018 9.89e-01 100 chrIV:216601-218075 7.93e-02 15_[+1(5.66e-05)]_64 chrIV:221678-222367 3.37e-01 100 chrIV:229090-230719 4.28e-01 100 chrIV:306678-309406 8.31e-01 100 chrIV:321606-321956 1.10e-01 100 chrIV:322207-323589 7.52e-01 100 chrIV:340474-341868 1.96e-01 100 chrIV:358005-358513 5.56e-01 100 chrIV:359363-359885 5.85e-13 4_[-2(6.15e-10)]_42_[-1(4.28e-10)]_\ 9 chrIV:410184-410784 6.68e-01 100 chrIV:411238-411690 2.40e-06 23_[+3(3.72e-05)]_[+2(8.50e-05)]_32 chrIV:434017-434996 6.59e-01 100 chrIV:437548-438390 7.38e-01 100 chrIV:488337-489125 9.90e-01 100 chrIV:490245-491276 5.65e-01 100 chrIV:491440-492793 2.37e-02 3_[+2(6.35e-05)]_73 chrIV:519650-519914 1.07e-09 12_[-2(9.63e-09)]_30_[-1(1.45e-07)]_\ 13 chrIV:520737-521433 7.36e-01 100 chrIV:555840-556404 1.70e-01 100 chrIV:568645-569382 1.17e-09 2_[-2(5.72e-07)]_18_[-1(1.37e-09)]_\ 35 chrIV:578870-580747 1.79e-01 100 chrIV:601213-602331 5.34e-01 100 chrIV:619682-620468 9.77e-01 100 chrIV:644912-645382 6.90e-07 62_[+1(1.04e-09)]_17 chrIV:667728-668260 1.76e-05 69_[+1(3.81e-09)]_10 chrIV:757515-758207 7.17e-01 100 chrIV:802554-803045 2.78e-04 27_[+2(1.09e-06)]_49 chrIV:835757-837158 1.18e-01 100 chrIV:884255-884639 2.26e-05 68_[-1(1.30e-08)]_11 chrIV:915294-916222 6.26e-01 100 chrIV:946120-946824 8.04e-01 100 chrIV:980641-981162 9.46e-01 100 chrIV:992719-993227 4.56e-01 100 chrIV:1013433-1013981 6.74e-01 100 chrIV:1016946-1017517 2.67e-08 32_[+1(1.00e-11)]_47 chrIV:1075284-1075769 5.21e-09 2_[+1(1.35e-10)]_77 chrIV:1094811-1095689 6.70e-01 100 chrIV:1150708-1151159 4.57e-07 32_[+2(5.14e-11)]_44 chrIV:1175744-1176625 9.27e-01 100 chrIV:1201519-1202109 2.00e-06 30_[-1(3.37e-09)]_49 chrIV:1256525-1257322 6.07e-01 100 chrIV:1300735-1301346 9.75e-01 100 chrIV:1305409-1305871 8.42e-06 41_[-2(1.10e-09)]_35 chrIV:1351787-1352005 5.15e-01 100 chrIV:1352217-1353318 1.54e-01 100 chrIV:1353718-1356017 3.16e-02 79_[+3(4.45e-05)] chrIV:1359416-1361253 6.94e-01 100 chrIV:1401198-1403424 6.28e-01 100 chrIV:1449906-1451665 6.20e-01 100 chrIV:1461434-1461849 2.57e-01 100 chrIV:1489140-1489796 9.83e-01 100 chrIX:68249-68980 8.57e-01 100 chrIX:98238-99443 7.05e-01 100 chrIX:99632-100296 9.27e-01 100 chrIX:174555-175702 9.60e-01 100 chrIX:183286-183734 3.74e-06 27_[+2(7.49e-10)]_49 chrIX:197354-197995 2.08e-07 11_[-1(1.00e-11)]_68 chrIX:210657-210941 1.95e-01 100 chrIX:248539-249003 2.71e-01 100 chrIX:254214-254569 2.62e-01 100 chrIX:257368-257931 9.41e-01 100 chrIX:299967-300907 1.08e-01 100 chrIX:315403-317653 5.00e-01 100 chrIX:323756-324384 9.12e-01 100 chrIX:325735-326210 6.90e-01 100 chrIX:336092-336631 1.76e-06 44_[+1(1.37e-09)]_35 chrIX:370219-370644 1.33e-07 79_[-1(2.97e-11)] chrIX:391170-392491 1.88e-01 100 chrV:53510-53971 1.11e-01 100 chrV:61035-62169 3.19e-01 100 chrV:67145-68836 1.36e-01 100 chrV:85108-86978 5.33e-01 100 chrV:99895-100326 2.20e-03 74_[-2(1.69e-06)]_2 chrV:117546-118326 5.15e-01 100 chrV:130824-131404 1.84e-09 24_[+1(1.04e-09)]_18_[+2(1.69e-06)]_\ 13 chrV:135077-136087 8.31e-01 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9.63e-01 100 chrXV:300869-302108 9.47e-01 100 chrXV:340115-340755 9.66e-01 100 chrXV:353397-354477 9.86e-01 100 chrXV:438428-439342 1.50e-01 100 chrXV:444616-446371 1.44e-01 100 chrXV:464272-465045 3.15e-01 100 chrXV:487431-487775 9.79e-01 100 chrXV:504981-505508 8.14e-01 100 chrXV:571420-572141 9.37e-01 100 chrXV:594303-594650 9.99e-01 100 chrXV:631872-632059 5.67e-01 100 chrXV:639174-639473 5.81e-06 34_[-3(1.04e-09)]_45 chrXV:663466-664200 1.20e-11 35_[+1(2.66e-10)]_20_[+2(1.68e-07)] chrXV:678601-679179 3.90e-01 100 chrXV:710122-710528 9.17e-01 100 chrXV:722910-724609 2.75e-01 100 chrXV:759010-759517 3.40e-01 100 chrXV:779691-780996 2.93e-01 100 chrXV:832253-832783 3.69e-02 100 chrXV:853627-854774 1.69e-05 43_[+1(1.79e-09)]_36 chrXV:866503-868055 7.01e-01 100 chrXV:900073-901250 7.11e-01 100 chrXV:901453-901657 3.38e-01 100 chrXV:925129-925435 3.33e-01 100 chrXV:968147-968943 8.68e-01 100 chrXV:976378-976629 2.21e-04 12_[-1(7.32e-08)]_67 chrXV:978807-979156 4.78e-01 100 chrXV:979752-981302 9.97e-01 100 chrXV:1003961-1004963 9.04e-01 100 chrXV:1025713-1026071 2.28e-01 100 chrXV:1027871-1029511 2.07e-01 100 chrXV:1091120-1091290 8.38e-01 100 chrXVI:55838-56426 2.04e-01 100 chrXVI:75472-76832 5.90e-04 54_[-2(4.81e-07)]_22 chrXVI:134879-135849 5.25e-01 100 chrXVI:172688-174041 9.91e-01 100 chrXVI:188343-189143 2.89e-01 100 chrXVI:209675-210515 5.99e-01 100 chrXVI:280553-281903 2.07e-01 100 chrXVI:302642-304997 4.43e-01 100 chrXVI:338559-339281 2.10e-03 23_[+2(1.69e-06)]_53 chrXVI:378646-379009 1.49e-02 100 chrXVI:404568-405982 3.08e-01 100 chrXVI:406171-408361 8.07e-01 100 chrXVI:435264-436182 7.90e-01 100 chrXVI:519891-520550 3.62e-01 100 chrXVI:559963-560495 9.14e-05 25_[+1(3.64e-07)]_54 chrXVI:572173-572724 5.00e-02 100 chrXVI:581834-582421 2.26e-05 29_[-1(3.37e-09)]_50 chrXVI:622305-623147 7.99e-01 100 chrXVI:689350-689864 1.98e-09 9_[-2(9.09e-10)]_28_[-1(6.78e-07)]_\ 18 chrXVI:699902-700712 3.79e-01 100 chrXVI:701893-702324 3.73e-01 100 chrXVI:731621-732698 6.65e-01 100 chrXVI:744081-744580 8.95e-07 5_[-2(4.81e-07)]_18_[-1(7.92e-07)]_\ 32 chrXVI:768828-769500 7.41e-01 100 chrXVI:775634-776118 2.76e-01 100 chrXVI:794469-795987 9.95e-01 100 chrXVI:810574-810893 1.40e-04 38_[-1(3.87e-07)]_41 chrXVI:819321-819830 8.98e-12 5_[-2(7.49e-10)]_20_[-1(3.81e-09)]_\ 30 chrXVI:821636-822167 9.62e-01 100 chrXVI:856708-857166 1.76e-10 16_[-2(3.76e-09)]_19_[-1(3.72e-08)]_\ 20 chrXVI:860163-860694 1.24e-11 2_[-2(4.02e-07)]_17_[-1(1.27e-11)]_\ 36 chrXVI:879431-880570 6.39e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************