******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--AFT1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71752-73711 1.0000 100 chrI:81934-82270 1.0000 100 chrI:138947-139386 1.0000 100 chrI:139568-139757 1.0000 100 chrI:166171-166599 1.0000 100 chrI:181124-181475 1.0000 100 chrI:182251-183183 1.0000 100 chrI:222918-223088 1.0000 100 chrII:9449-10060 1.0000 100 chrII:36233-36894 1.0000 100 chrII:44987-45359 1.0000 100 chrII:59600-61448 1.0000 100 chrII:87916-88562 1.0000 100 chrII:88963-89505 1.0000 100 chrII:89672-90004 1.0000 100 chrII:159806-159988 1.0000 100 chrII:165075-165433 1.0000 100 chrII:167866-169612 1.0000 100 chrII:181347-181614 1.0000 100 chrII:197270-197855 1.0000 100 chrII:226969-227369 1.0000 100 chrII:255115-255732 1.0000 100 chrII:256241-257889 1.0000 100 chrII:266175-266712 1.0000 100 chrII:326434-327071 1.0000 100 chrII:332244-333087 1.0000 100 chrII:347406-348095 1.0000 100 chrII:350596-351052 1.0000 100 chrII:393044-394757 1.0000 100 chrII:405684-406228 1.0000 100 chrII:415517-416078 1.0000 100 chrII:476831-477761 1.0000 100 chrII:478985-479552 1.0000 100 chrII:504533-504737 1.0000 100 chrII:530915-532188 1.0000 100 chrII:544609-544805 1.0000 100 chrII:556484-558120 1.0000 100 chrII:592278-593633 1.0000 100 chrII:604076-607160 1.0000 100 chrII:642839-643247 1.0000 100 chrII:644914-645423 1.0000 100 chrII:680380-682354 1.0000 100 chrIII:77-609 1.0000 100 chrIII:844-1062 1.0000 100 chrIII:11116-11532 1.0000 100 chrIII:13950-15222 1.0000 100 chrIII:29552-31183 1.0000 100 chrIII:78414-78858 1.0000 100 chrIII:82250-82674 1.0000 100 chrIII:90850-91187 1.0000 100 chrIII:107218-107822 1.0000 100 chrIII:123235-123814 1.0000 100 chrIII:127482-127913 1.0000 100 chrIII:137794-138980 1.0000 100 chrIII:142072-142965 1.0000 100 chrIII:149517-150269 1.0000 100 chrIII:151001-151533 1.0000 100 chrIII:163457-163900 1.0000 100 chrIII:168114-168552 1.0000 100 chrIII:177103-178829 1.0000 100 chrIII:227737-228261 1.0000 100 chrIII:262629-263128 1.0000 100 chrIII:295294-295968 1.0000 100 chrIII:308642-309266 1.0000 100 chrIII:315596-316052 1.0000 100 chrIII:316232-316594 1.0000 100 chrIV:15-242 1.0000 100 chrIV:83331-83817 1.0000 100 chrIV:117132-118227 1.0000 100 chrIV:118441-118914 1.0000 100 chrIV:129204-131010 1.0000 100 chrIV:216602-218078 1.0000 100 chrIV:220943-222348 1.0000 100 chrIV:229141-230742 1.0000 100 chrIV:305649-310185 1.0000 100 chrIV:321607-321963 1.0000 100 chrIV:322166-323581 1.0000 100 chrIV:331243-333307 1.0000 100 chrIV:340416-341664 1.0000 100 chrIV:355676-356961 1.0000 100 chrIV:358013-358470 1.0000 100 chrIV:359380-359944 1.0000 100 chrIV:410159-410785 1.0000 100 chrIV:411253-411654 1.0000 100 chrIV:433875-435120 1.0000 100 chrIV:437549-438140 1.0000 100 chrIV:465265-465528 1.0000 100 chrIV:488438-489138 1.0000 100 chrIV:489712-491255 1.0000 100 chrIV:519650-520120 1.0000 100 chrIV:520734-521439 1.0000 100 chrIV:568674-569391 1.0000 100 chrIV:578991-580760 1.0000 100 chrIV:619650-620198 1.0000 100 chrIV:644712-645390 1.0000 100 chrIV:667697-668267 1.0000 100 chrIV:765087-765616 1.0000 100 chrIV:802536-803030 1.0000 100 chrIV:835760-836258 1.0000 100 chrIV:884243-884663 1.0000 100 chrIV:913957-916215 1.0000 100 chrIV:946138-946642 1.0000 100 chrIV:980638-981162 1.0000 100 chrIV:992722-993541 1.0000 100 chrIV:1005174-1005936 1.0000 100 chrIV:1006394-1006693 1.0000 100 chrIV:1013407-1013949 1.0000 100 chrIV:1016969-1017519 1.0000 100 chrIV:1075126-1075753 1.0000 100 chrIV:1095123-1095662 1.0000 100 chrIV:1150704-1151182 1.0000 100 chrIV:1175742-1176249 1.0000 100 chrIV:1176422-1176643 1.0000 100 chrIV:1201515-1202010 1.0000 100 chrIV:1256813-1257298 1.0000 100 chrIV:1269900-1270856 1.0000 100 chrIV:1300882-1301346 1.0000 100 chrIV:1301565-1302428 1.0000 100 chrIV:1305408-1305910 1.0000 100 chrIV:1352038-1353091 1.0000 100 chrIV:1355720-1355997 1.0000 100 chrIV:1359185-1361304 1.0000 100 chrIV:1401075-1403365 1.0000 100 chrIV:1449713-1451638 1.0000 100 chrIV:1461424-1461979 1.0000 100 chrIX:68256-68500 1.0000 100 chrIX:99625-100317 1.0000 100 chrIX:174720-175246 1.0000 100 chrIX:182739-183739 1.0000 100 chrIX:197365-198142 1.0000 100 chrIX:210657-211067 1.0000 100 chrIX:231217-231659 1.0000 100 chrIX:248527-249025 1.0000 100 chrIX:254228-254562 1.0000 100 chrIX:257370-258133 1.0000 100 chrIX:299062-299228 1.0000 100 chrIX:300029-300828 1.0000 100 chrIX:315932-318294 1.0000 100 chrIX:323607-324387 1.0000 100 chrIX:325737-326140 1.0000 100 chrIX:336064-336632 1.0000 100 chrIX:370208-370799 1.0000 100 chrIX:391412-392143 1.0000 100 chrV:27232-28443 1.0000 100 chrV:42169-42647 1.0000 100 chrV:53521-54103 1.0000 100 chrV:61040-62162 1.0000 100 chrV:66950-69308 1.0000 100 chrV:77976-79469 1.0000 100 chrV:79635-79953 1.0000 100 chrV:85105-86948 1.0000 100 chrV:99901-100346 1.0000 100 chrV:117247-118325 1.0000 100 chrV:130818-131392 1.0000 100 chrV:134979-136057 1.0000 100 chrV:138456-140909 1.0000 100 chrV:176870-177445 1.0000 100 chrV:207350-208255 1.0000 100 chrV:249778-250642 1.0000 100 chrV:269200-270699 1.0000 100 chrV:288128-288747 1.0000 100 chrV:305810-306946 1.0000 100 chrV:311724-312308 1.0000 100 chrV:321967-323428 1.0000 100 chrV:342983-343299 1.0000 100 chrV:354702-355488 1.0000 100 chrV:362049-362477 1.0000 100 chrV:395916-398081 1.0000 100 chrV:422770-424338 1.0000 100 chrV:431015-431923 1.0000 100 chrV:434378-435128 1.0000 100 chrV:435567-436016 1.0000 100 chrV:438490-438980 1.0000 100 chrV:441790-442702 1.0000 100 chrV:443017-443363 1.0000 100 chrV:460629-462181 1.0000 100 chrV:469260-470302 1.0000 100 chrV:487064-487599 1.0000 100 chrV:492183-492587 1.0000 100 chrV:551024-551781 1.0000 100 chrVI:64010-65475 1.0000 100 chrVI:82530-84444 1.0000 100 chrVI:95472-95903 1.0000 100 chrVI:100978-101697 1.0000 100 chrVI:137227-137705 1.0000 100 chrVI:157833-158287 1.0000 100 chrVI:162014-162404 1.0000 100 chrVI:167186-167713 1.0000 100 chrVI:180665-181291 1.0000 100 chrVI:191145-191772 1.0000 100 chrVI:210426-210942 1.0000 100 chrVI:221735-222269 1.0000 100 chrVI:222910-224190 1.0000 100 chrVI:226434-226926 1.0000 100 chrVII:276-1203 1.0000 100 chrVII:23878-25467 1.0000 100 chrVII:110358-110787 1.0000 100 chrVII:115327-115733 1.0000 100 chrVII:122004-122960 1.0000 100 chrVII:148081-149592 1.0000 100 chrVII:149769-150163 1.0000 100 chrVII:185355-185927 1.0000 100 chrVII:205308-206081 1.0000 100 chrVII:254097-254728 1.0000 100 chrVII:255202-255826 1.0000 100 chrVII:277017-278719 1.0000 100 chrVII:287124-287683 1.0000 100 chrVII:310352-312267 1.0000 100 chrVII:316761-317414 1.0000 100 chrVII:319236-320158 1.0000 100 chrVII:328395-329316 1.0000 100 chrVII:345843-346625 1.0000 100 chrVII:364897-366725 1.0000 100 chrVII:370116-371876 1.0000 100 chrVII:372033-372602 1.0000 100 chrVII:397969-398220 1.0000 100 chrVII:401409-401620 1.0000 100 chrVII:405461-405796 1.0000 100 chrVII:412065-412590 1.0000 100 chrVII:422506-423588 1.0000 100 chrVII:437212-443129 1.0000 100 chrVII:479165-482751 1.0000 100 chrVII:483434-483669 1.0000 100 chrVII:531265-532002 1.0000 100 chrVII:533841-535193 1.0000 100 chrVII:541706-542193 1.0000 100 chrVII:544068-544883 1.0000 100 chrVII:545087-546002 1.0000 100 chrVII:555054-557505 1.0000 100 chrVII:561430-561738 1.0000 100 chrVII:599390-601003 1.0000 100 chrVII:609319-610053 1.0000 100 chrVII:648740-649370 1.0000 100 chrVII:661502-661948 1.0000 100 chrVII:700218-701261 1.0000 100 chrVII:706687-707188 1.0000 100 chrVII:726301-728184 1.0000 100 chrVII:730940-731452 1.0000 100 chrVII:735890-736863 1.0000 100 chrVII:738839-739539 1.0000 100 chrVII:773837-774740 1.0000 100 chrVII:779179-779969 1.0000 100 chrVII:786900-788781 1.0000 100 chrVII:794083-794587 1.0000 100 chrVII:806454-807792 1.0000 100 chrVII:823338-823729 1.0000 100 chrVII:828415-828997 1.0000 100 chrVII:845427-846005 1.0000 100 chrVII:856757-857006 1.0000 100 chrVII:857179-857662 1.0000 100 chrVII:876179-877158 1.0000 100 chrVII:878554-879060 1.0000 100 chrVII:882428-883902 1.0000 100 chrVII:930737-931682 1.0000 100 chrVII:968835-969280 1.0000 100 chrVII:1003919-1004454 1.0000 100 chrVIII:20198-21532 1.0000 100 chrVIII:34407-36136 1.0000 100 chrVIII:62548-62981 1.0000 100 chrVIII:74880-76288 1.0000 100 chrVIII:85103-85371 1.0000 100 chrVIII:102790-105463 1.0000 100 chrVIII:115835-116424 1.0000 100 chrVIII:119668-121699 1.0000 100 chrVIII:125892-127921 1.0000 100 chrVIII:132525-133114 1.0000 100 chrVIII:134110-134710 1.0000 100 chrVIII:145524-146489 1.0000 100 chrVIII:147596-148741 1.0000 100 chrVIII:148929-149513 1.0000 100 chrVIII:175013-175422 1.0000 100 chrVIII:237747-238146 1.0000 100 chrVIII:296881-297228 1.0000 100 chrVIII:358274-358781 1.0000 100 chrVIII:382685-383363 1.0000 100 chrVIII:388634-389005 1.0000 100 chrVIII:411020-411680 1.0000 100 chrVIII:451273-453218 1.0000 100 chrVIII:466833-467526 1.0000 100 chrVIII:475381-475913 1.0000 100 chrVIII:492961-493588 1.0000 100 chrVIII:505814-506225 1.0000 100 chrVIII:555776-556361 1.0000 100 chrVIII:562341-562592 1.0000 100 chrX:58993-59438 1.0000 100 chrX:73363-75721 1.0000 100 chrX:90040-90437 1.0000 100 chrX:115824-116265 1.0000 100 chrX:139179-140317 1.0000 100 chrX:157439-157895 1.0000 100 chrX:196876-197448 1.0000 100 chrX:204542-205040 1.0000 100 chrX:227771-228615 1.0000 100 chrX:233626-234204 1.0000 100 chrX:348914-349457 1.0000 100 chrX:354007-354496 1.0000 100 chrX:355176-355737 1.0000 100 chrX:374168-374837 1.0000 100 chrX:378209-378793 1.0000 100 chrX:390365-390568 1.0000 100 chrX:390815-391351 1.0000 100 chrX:391831-392102 1.0000 100 chrX:396374-397013 1.0000 100 chrX:414761-415284 1.0000 100 chrX:415651-416247 1.0000 100 chrX:422697-423350 1.0000 100 chrX:424253-424720 1.0000 100 chrX:517643-518103 1.0000 100 chrX:523812-524411 1.0000 100 chrX:531499-532263 1.0000 100 chrX:532446-532678 1.0000 100 chrX:538032-538874 1.0000 100 chrX:539036-539213 1.0000 100 chrX:540940-542359 1.0000 100 chrX:542789-543260 1.0000 100 chrX:607900-609122 1.0000 100 chrX:617669-618155 1.0000 100 chrX:651135-651601 1.0000 100 chrX:651862-653099 1.0000 100 chrX:663377-664370 1.0000 100 chrX:702947-703658 1.0000 100 chrX:745068-745748 1.0000 100 chrXI:783-1074 1.0000 100 chrXI:46634-47007 1.0000 100 chrXI:67741-68398 1.0000 100 chrXI:74414-74873 1.0000 100 chrXI:83973-84456 1.0000 100 chrXI:99769-99958 1.0000 100 chrXI:108569-109093 1.0000 100 chrXI:140708-141475 1.0000 100 chrXI:141705-142770 1.0000 100 chrXI:158210-159626 1.0000 100 chrXI:162041-162777 1.0000 100 chrXI:163326-164412 1.0000 100 chrXI:202265-203299 1.0000 100 chrXI:219644-220121 1.0000 100 chrXI:259217-259961 1.0000 100 chrXI:261113-261884 1.0000 100 chrXI:282812-284867 1.0000 100 chrXI:302680-303242 1.0000 100 chrXI:307904-308484 1.0000 100 chrXI:312469-314025 1.0000 100 chrXI:326072-327585 1.0000 100 chrXI:334147-334934 1.0000 100 chrXI:364527-365159 1.0000 100 chrXI:382199-382445 1.0000 100 chrXI:430671-431662 1.0000 100 chrXI:457988-458981 1.0000 100 chrXI:490735-491260 1.0000 100 chrXI:513110-513613 1.0000 100 chrXI:517788-518171 1.0000 100 chrXI:558626-559451 1.0000 100 chrXI:578684-579381 1.0000 100 chrXI:591069-592100 1.0000 100 chrXI:617628-619362 1.0000 100 chrXI:666020-666179 1.0000 100 chrXI:666622-666800 1.0000 100 chrXII:39401-40346 1.0000 100 chrXII:47484-49457 1.0000 100 chrXII:86947-87195 1.0000 100 chrXII:92244-92946 1.0000 100 chrXII:167733-168242 1.0000 100 chrXII:198376-199698 1.0000 100 chrXII:201655-202712 1.0000 100 chrXII:214647-215067 1.0000 100 chrXII:231960-234225 1.0000 100 chrXII:241602-242009 1.0000 100 chrXII:242206-243470 1.0000 100 chrXII:253160-253359 1.0000 100 chrXII:261278-264000 1.0000 100 chrXII:282443-283993 1.0000 100 chrXII:348153-348708 1.0000 100 chrXII:366035-366558 1.0000 100 chrXII:369639-370266 1.0000 100 chrXII:374181-374671 1.0000 100 chrXII:416515-417088 1.0000 100 chrXII:424228-424438 1.0000 100 chrXII:426863-427454 1.0000 100 chrXII:448486-449073 1.0000 100 chrXII:459605-460731 1.0000 100 chrXII:498331-500169 1.0000 100 chrXII:522132-522397 1.0000 100 chrXII:568039-571051 1.0000 100 chrXII:592314-593007 1.0000 100 chrXII:605141-605626 1.0000 100 chrXII:628090-628850 1.0000 100 chrXII:636693-639975 1.0000 100 chrXII:656837-657218 1.0000 100 chrXII:673529-674950 1.0000 100 chrXII:687649-687909 1.0000 100 chrXII:710464-710882 1.0000 100 chrXII:713147-713698 1.0000 100 chrXII:731246-732333 1.0000 100 chrXII:734588-735130 1.0000 100 chrXII:780538-781884 1.0000 100 chrXII:784113-784577 1.0000 100 chrXII:793773-795416 1.0000 100 chrXII:795592-797445 1.0000 100 chrXII:809749-811555 1.0000 100 chrXII:818499-820386 1.0000 100 chrXII:837681-839411 1.0000 100 chrXII:874956-876122 1.0000 100 chrXII:897654-899704 1.0000 100 chrXII:903398-904428 1.0000 100 chrXII:921706-923101 1.0000 100 chrXII:930726-931844 1.0000 100 chrXII:932084-932527 1.0000 100 chrXII:951041-953712 1.0000 100 chrXII:962816-963319 1.0000 100 chrXII:975761-976202 1.0000 100 chrXII:1017660-1019514 1.0000 100 chrXII:1028153-1028570 1.0000 100 chrXII:1051922-1052228 1.0000 100 chrXIII:5478-5660 1.0000 100 chrXIII:19001-20510 1.0000 100 chrXIII:67572-68002 1.0000 100 chrXIII:91689-92107 1.0000 100 chrXIII:131552-132147 1.0000 100 chrXIII:145870-147589 1.0000 100 chrXIII:162969-164332 1.0000 100 chrXIII:168181-169045 1.0000 100 chrXIII:195933-196310 1.0000 100 chrXIII:224102-224457 1.0000 100 chrXIII:225270-227726 1.0000 100 chrXIII:251764-252392 1.0000 100 chrXIII:253332-253573 1.0000 100 chrXIII:258982-259438 1.0000 100 chrXIII:290547-291170 1.0000 100 chrXIII:296750-298920 1.0000 100 chrXIII:306541-306841 1.0000 100 chrXIII:320961-321326 1.0000 100 chrXIII:352050-352910 1.0000 100 chrXIII:362933-363336 1.0000 100 chrXIII:372158-372669 1.0000 100 chrXIII:378869-379635 1.0000 100 chrXIII:388265-389254 1.0000 100 chrXIII:420293-420882 1.0000 100 chrXIII:463314-463876 1.0000 100 chrXIII:480376-480839 1.0000 100 chrXIII:498958-500777 1.0000 100 chrXIII:504897-505263 1.0000 100 chrXIII:549852-553456 1.0000 100 chrXIII:572576-573179 1.0000 100 chrXIII:586364-586939 1.0000 100 chrXIII:625880-627156 1.0000 100 chrXIII:650836-652955 1.0000 100 chrXIII:701752-703274 1.0000 100 chrXIII:731808-733148 1.0000 100 chrXIII:747673-749079 1.0000 100 chrXIII:754424-755264 1.0000 100 chrXIII:760416-763159 1.0000 100 chrXIII:768165-768445 1.0000 100 chrXIII:772909-773253 1.0000 100 chrXIII:807969-808550 1.0000 100 chrXIII:837738-838244 1.0000 100 chrXIII:861163-861434 1.0000 100 chrXIII:872680-872959 1.0000 100 chrXIII:887120-889175 1.0000 100 chrXIII:913879-917180 1.0000 100 chrXIV:6617-6984 1.0000 100 chrXIV:24045-25100 1.0000 100 chrXIV:25271-27562 1.0000 100 chrXIV:61930-64517 1.0000 100 chrXIV:88956-90151 1.0000 100 chrXIV:96031-96474 1.0000 100 chrXIV:102570-103189 1.0000 100 chrXIV:104569-105122 1.0000 100 chrXIV:173779-174667 1.0000 100 chrXIV:229236-230855 1.0000 100 chrXIV:241172-241771 1.0000 100 chrXIV:302612-303792 1.0000 100 chrXIV:330648-331088 1.0000 100 chrXIV:374600-375126 1.0000 100 chrXIV:442792-444813 1.0000 100 chrXIV:493514-495830 1.0000 100 chrXIV:498945-500762 1.0000 100 chrXIV:518838-519142 1.0000 100 chrXIV:525068-525315 1.0000 100 chrXIV:546511-547633 1.0000 100 chrXIV:560213-560915 1.0000 100 chrXIV:568052-568628 1.0000 100 chrXIV:569694-570090 1.0000 100 chrXIV:585482-586626 1.0000 100 chrXIV:602076-602576 1.0000 100 chrXIV:631536-632142 1.0000 100 chrXIV:632416-632910 1.0000 100 chrXIV:715815-716625 1.0000 100 chrXIV:721252-723199 1.0000 100 chrXIV:725686-726580 1.0000 100 chrXIV:738820-740121 1.0000 100 chrXIV:763949-764261 1.0000 100 chrXIV:783672-784323 1.0000 100 chrXV:79734-80137 1.0000 100 chrXV:80342-81156 1.0000 100 chrXV:92698-94800 1.0000 100 chrXV:109577-110686 1.0000 100 chrXV:110851-111204 1.0000 100 chrXV:113557-113993 1.0000 100 chrXV:159239-160118 1.0000 100 chrXV:160335-160713 1.0000 100 chrXV:161118-161688 1.0000 100 chrXV:168104-168340 1.0000 100 chrXV:216280-216695 1.0000 100 chrXV:226416-226922 1.0000 100 chrXV:228092-228665 1.0000 100 chrXV:252841-253631 1.0000 100 chrXV:253809-254719 1.0000 100 chrXV:274452-275014 1.0000 100 chrXV:281935-282469 1.0000 100 chrXV:287519-288429 1.0000 100 chrXV:300851-301599 1.0000 100 chrXV:340133-340763 1.0000 100 chrXV:353775-354318 1.0000 100 chrXV:407649-408230 1.0000 100 chrXV:438433-439016 1.0000 100 chrXV:444663-446671 1.0000 100 chrXV:464283-464814 1.0000 100 chrXV:487431-487766 1.0000 100 chrXV:504793-505489 1.0000 100 chrXV:571702-572153 1.0000 100 chrXV:593808-594684 1.0000 100 chrXV:619690-623711 1.0000 100 chrXV:639239-639486 1.0000 100 chrXV:663499-664117 1.0000 100 chrXV:677929-679149 1.0000 100 chrXV:710119-710754 1.0000 100 chrXV:759037-759528 1.0000 100 chrXV:779699-781013 1.0000 100 chrXV:841428-842911 1.0000 100 chrXV:853996-854810 1.0000 100 chrXV:866517-867327 1.0000 100 chrXV:901457-901694 1.0000 100 chrXV:925204-925423 1.0000 100 chrXV:968133-968405 1.0000 100 chrXV:976378-976777 1.0000 100 chrXV:978813-979152 1.0000 100 chrXV:980124-981325 1.0000 100 chrXV:988801-989385 1.0000 100 chrXV:1003961-1004992 1.0000 100 chrXV:1025724-1026085 1.0000 100 chrXV:1027853-1029289 1.0000 100 chrXV:1091116-1091290 1.0000 100 chrXVI:55840-56431 1.0000 100 chrXVI:75335-76754 1.0000 100 chrXVI:134884-135848 1.0000 100 chrXVI:172854-174035 1.0000 100 chrXVI:188378-188927 1.0000 100 chrXVI:209811-210566 1.0000 100 chrXVI:280557-282971 1.0000 100 chrXVI:302652-304291 1.0000 100 chrXVI:338614-339393 1.0000 100 chrXVI:378657-379008 1.0000 100 chrXVI:404552-407921 1.0000 100 chrXVI:435060-435334 1.0000 100 chrXVI:435517-436202 1.0000 100 chrXVI:520125-520677 1.0000 100 chrXVI:559984-560516 1.0000 100 chrXVI:572176-572864 1.0000 100 chrXVI:581840-582384 1.0000 100 chrXVI:622129-622873 1.0000 100 chrXVI:689336-689859 1.0000 100 chrXVI:699854-700707 1.0000 100 chrXVI:701881-702336 1.0000 100 chrXVI:718247-719538 1.0000 100 chrXVI:731630-732322 1.0000 100 chrXVI:744072-744634 1.0000 100 chrXVI:768998-769835 1.0000 100 chrXVI:775623-776202 1.0000 100 chrXVI:785672-786274 1.0000 100 chrXVI:794474-795983 1.0000 100 chrXVI:810573-811127 1.0000 100 chrXVI:819137-820088 1.0000 100 chrXVI:821623-822182 1.0000 100 chrXVI:829022-829319 1.0000 100 chrXVI:856708-857159 1.0000 100 chrXVI:860155-860687 1.0000 100 chrXVI:879593-880585 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--AFT1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--AFT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--AFT1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 577 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57700 N= 577 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.302 C 0.198 G 0.198 T 0.302 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--AFT1/background): A 0.312 C 0.188 G 0.188 T 0.312 ******************************************************************************** ******************************************************************************** MOTIF RRGRTCMBSGGTTCGAYYCCSVKHKDGRG MEME-1 width = 29 sites = 88 llr = 1743 E-value = 4.3e-376 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGAYYCCSVKHKDGRG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 46243:3::2::::3a2::::3:313241 pos.-specific C 111:17534::::a::25a7641421212 probability G 4366::1467a:::7:1:::435:44646 matrix T 1:::63:3:::aa:::45:3::33231:2 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * ****** * Entropy 1.2 * * ******* *** (28.6 bits) 1.0 * * ******** **** 0.7 ** * ******** ****** * * 0.5 *************** ****** *** 0.2 **************** ************ 0.0 ----------------------------- Multilevel AAGGTCCGGGGTTCGATCCCCCGCGGGAG consensus GG AATACCA A CT TGGTTTT G sequence T A A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGAYYCCSVKHKDGRG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:631536-632142 - 59 9.96e-13 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCCGGCTCGCC CCCATTGATT chrIV:1016969-1017519 - 15 9.96e-13 TTCTCACCGT GGAGACCGGGGTTCGACTCCCCGCTTCGG AGTTTCTTTT chrXVI:581840-582384 + 42 2.65e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTTTCTTTTT chrXIII:480376-480839 - 66 2.65e-12 AATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTTCTTTTTT chrX:414761-415284 + 36 2.65e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTAATATTTT chrVI:226434-226926 - 60 2.65e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTTATCTCTT chrV:435567-436016 - 13 2.65e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTTTCTTTTT chrIII:151001-151533 - 69 2.65e-12 CAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTTTCTTTTT chrXVI:819137-820088 + 10 4.22e-12 AATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTTATTTT chrXIV:569694-570090 - 27 4.22e-12 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTCTTTTT chrXII:1051922-1052228 - 48 4.22e-12 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTATTTTT chrXII:734588-735130 + 36 4.22e-12 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTTATTTT chrVII:738839-739539 + 26 4.22e-12 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTTACTTT chrV:443017-443363 - 64 4.22e-12 ATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATATTTTTT chrII:197270-197855 + 25 4.22e-12 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTTTTTTG chrXVI:209811-210566 - 56 6.62e-12 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTTTTCTTT chrXIII:290547-291170 + 34 6.62e-12 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTCTTCTTT chrVII:401409-401620 - 65 6.62e-12 TCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTATTTTTT chrV:487064-487599 - 52 6.62e-12 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTATTCGTT chrV:176870-177445 + 33 6.62e-12 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTACTTTTT chrIX:370208-370799 + 5 6.62e-12 CCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTATGTTTA chrIII:82250-82674 - 52 6.62e-12 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTTTTTTTT chrXVI:860155-860687 + 48 1.18e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAGATTTTAT chrXV:281935-282469 + 52 1.18e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CATTTCTTTT chrXIII:131552-132147 - 28 1.18e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGCTTTGTTT chrX:531499-532263 + 37 1.18e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAGTTTCTTT chrX:374168-374837 - 56 1.18e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGCTTTGTTT chrX:355176-355737 + 9 1.18e-11 CTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGCTTTGTTT chrVII:845427-846005 + 23 1.18e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAATGTTTTT chrVII:828415-828997 - 69 1.18e-11 CAG AAGATTATGGGTTCGACCCCCATCGTGAG TGCTTTTTTT chrVII:735890-736863 + 55 1.18e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGTTGTTTTT chrVI:180665-181291 - 48 1.18e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAGTCCTTTT chrIV:83331-83817 + 64 1.18e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAAGTTTA chrII:405684-406228 + 13 1.18e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGCTTTGTTT chrIV:1256813-1257298 - 5 7.42e-11 TTCCCAAGCA TGGGGCCCGGGTTCGATTCCCGGCTTCCG CATT chrIV:488438-489138 - 61 1.07e-10 TTACACGGCG AAGATCCCGAGTTCGAACCTCGGTTGGAT CAGAATCTTT chrXV:438433-439016 + 34 1.20e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGG AGTTCTTTAT chrXI:578684-579381 + 48 1.20e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGG AGTTCTTTAC chrIV:359380-359944 + 30 1.20e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGG AGTTCTTTCT chrVIII:134110-134710 + 2 1.51e-10 G GACAACCCCGGTTCGAATCCGGGTAGGAC CTTTTTTTGC chrIII:168114-168552 - 20 1.51e-10 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGAC CTTTTTTTGA chrXV:464283-464814 + 23 1.70e-10 AAGCATGCGA GAGGCCCTGGGTTCAATTCCCAGCTCGCC CCTTTTATTT chrXIII:807969-808550 - 39 2.38e-10 TTCTGATCCG AACAACCCCAGTTCGAATCCGGGTGGGAC CTTCCCTTCA chrV:311724-312308 - 59 2.66e-10 TTGCAAGGAA GAGGTCATCGGTTCGATTCCGGTTGCGTC CAATGAAATC chrXIV:96031-96474 - 41 4.56e-10 CTTCCAAGGT GGGGACACGGGTTCGATTCTCGTACCGCT CAAATTTTTT chrXV:663499-664117 - 56 5.62e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTTTTAAG chrXIII:586364-586939 - 37 5.62e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTTTTTTG chrXIII:420293-420882 - 53 5.62e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTTTTATC chrXI:307904-308484 - 2 5.62e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT C chrVII:823338-823729 + 42 5.62e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTTTTTGA chrVII:412065-412590 - 19 5.62e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CAAGTTTTAT chrV:438490-438980 + 58 5.62e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CAATTTTTTT chrXV:353775-354318 - 47 6.23e-10 TAGTAATGTG GAGATCATCGGTTCAAATCCGATTGGAAG CATTTTTTGT chrXIV:104569-105122 + 52 6.23e-10 TAGTAATGTG GAGATCATCGGTTCAAATCCGATTGGAAG CATATTATTT chrXIII:463314-463876 + 50 6.23e-10 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTT chrXII:426863-427454 + 65 6.23e-10 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGAATTT chrXI:513110-513613 - 23 6.23e-10 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTA chrX:204542-205040 + 35 6.23e-10 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTT chrVIII:115835-116424 - 30 6.23e-10 TAGTAATGTG GAGATCATCGGTTCAAATCCGATTGGAAG CATTTTTTGC chrVII:531265-532002 + 68 6.23e-10 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGAT chrV:130818-131392 - 29 6.23e-10 TTTTGATCCG AACAACCCCGGTTCGAATCCGGGTAAGAC CTATTTTTTT chrIX:336064-336632 - 53 6.23e-10 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTT chrIV:568674-569391 + 23 6.23e-10 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGAATTTTTT chrII:266175-266712 + 27 6.23e-10 TAGTAATGTG GAGATCATCGGTTCAAATCCGATTGGAAG CATTTTTTTG chrXIII:572576-573179 - 58 6.90e-10 TCATAATCTG AAGGTCGAGAGTTCGAACCTCCCCTGGAG CACATTTTTT chrX:422697-423350 + 6 6.90e-10 ATCTG AAGGTCGAGAGTTCGAACCTCCCCTGGAG CACATTTTCT chrX:390815-391351 - 12 6.90e-10 TCATAATCTG AAGGTCGAGAGTTCGAACCTCCCCTGGAG CATATTTTTA chrXV:228092-228665 + 46 2.40e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTATTTTT chrXIV:632416-632910 + 29 2.40e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTTTTTTT chrXII:975761-976202 - 54 2.40e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTTATTTT chrVII:730940-731452 + 34 2.40e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTTTTTGC chrVI:137227-137705 - 72 2.40e-09 . AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTTTTTTA chrIV:884243-884663 + 60 2.63e-09 AAGCAACGCG ACCGTCGTGGGTTCAAACCCCACCTCGAG CACTTTCTCT chrXIII:837738-838244 + 45 6.75e-09 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGA GATATTTTTT chrIV:946138-946642 + 30 6.75e-09 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGA GATTTTTTTA chrXII:374181-374671 + 21 1.27e-08 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGA AGATTTTTTT chrXI:490735-491260 + 63 1.27e-08 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGA AGAATTTTT chrV:492183-492587 - 19 1.27e-08 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGA AGGATTATTT chrIV:1095123-1095662 - 30 1.60e-08 AAGATATCTG GAGGTCCTGTGTTCGATCCACAGAGTTCG CATTTTTATT chrXVI:856708-857159 + 61 1.72e-08 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTC CATTTTAATT chrXIII:320961-321326 - 56 1.72e-08 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTC CATTTTTTAT chrII:642839-643247 - 16 3.29e-08 TGCAAATCTG TTGGTCCTTAGTTCGATCCTGAGTGCGAG CTTCTTTTTT chrVIII:358274-358781 - 3 4.93e-08 AAGTTATCTG GAGGTCCTGTGTTCGATCCACAGAATTCG CA chrXVI:744072-744634 + 22 6.39e-08 TTGTAATGCA AAGGTCGTTAGTTCAATTCTGACAGGTGG CAAAATTTTT chrVII:700218-701261 + 37 9.87e-08 TGATCTCTTC GGAGGCGCGGGTTCAAACCCCGCGGGTAT CAATATTTTT chrXIII:362933-363336 + 21 2.46e-07 TTGTGGCCGA TGAAACCCTGGTTCGATTCTAGGAGATGG CATTTTCTTT chrVIII:20198-21532 - 67 3.92e-07 GGGAA TGGAACACGAGTTGAATCCTGAGACTCAT AATGATTCCA chrXVI:829022-829319 + 37 4.78e-07 GGTTAATTCT GTCACTAGGGGTCCGAATCTCGGATTAAG TATAAAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGAYYCCSVKHKDGRG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631536-632142 1e-12 58_[-1]_13 chrIV:1016969-1017519 1e-12 14_[-1]_57 chrXVI:581840-582384 2.7e-12 41_[+1]_30 chrXIII:480376-480839 2.7e-12 65_[-1]_6 chrX:414761-415284 2.7e-12 35_[+1]_36 chrVI:226434-226926 2.7e-12 59_[-1]_12 chrV:435567-436016 2.7e-12 12_[-1]_59 chrIII:151001-151533 2.7e-12 68_[-1]_3 chrXVI:819137-820088 4.2e-12 9_[+1]_62 chrXIV:569694-570090 4.2e-12 26_[-1]_45 chrXII:1051922-1052228 4.2e-12 47_[-1]_24 chrXII:734588-735130 4.2e-12 35_[+1]_36 chrVII:738839-739539 4.2e-12 25_[+1]_46 chrV:443017-443363 4.2e-12 63_[-1]_8 chrII:197270-197855 4.2e-12 24_[+1]_47 chrXVI:209811-210566 6.6e-12 55_[-1]_16 chrXIII:290547-291170 6.6e-12 33_[+1]_38 chrVII:401409-401620 6.6e-12 64_[-1]_7 chrV:487064-487599 6.6e-12 51_[-1]_20 chrV:176870-177445 6.6e-12 32_[+1]_39 chrIX:370208-370799 6.6e-12 4_[+1]_67 chrIII:82250-82674 6.6e-12 51_[-1]_20 chrXVI:860155-860687 1.2e-11 47_[+1]_24 chrXV:281935-282469 1.2e-11 51_[+1]_20 chrXIII:131552-132147 1.2e-11 27_[-1]_44 chrX:531499-532263 1.2e-11 36_[+1]_35 chrX:374168-374837 1.2e-11 55_[-1]_16 chrX:355176-355737 1.2e-11 8_[+1]_63 chrVII:845427-846005 1.2e-11 22_[+1]_49 chrVII:828415-828997 1.2e-11 68_[-1]_3 chrVII:735890-736863 1.2e-11 54_[+1]_17 chrVI:180665-181291 1.2e-11 47_[-1]_24 chrIV:83331-83817 1.2e-11 63_[+1]_8 chrII:405684-406228 1.2e-11 12_[+1]_59 chrIV:1256813-1257298 7.4e-11 4_[-1]_67 chrIV:488438-489138 1.1e-10 60_[-1]_11 chrXV:438433-439016 1.2e-10 33_[+1]_38 chrXI:578684-579381 1.2e-10 47_[+1]_24 chrIV:359380-359944 1.2e-10 29_[+1]_42 chrVIII:134110-134710 1.5e-10 1_[+1]_70 chrIII:168114-168552 1.5e-10 19_[-1]_52 chrXV:464283-464814 1.7e-10 22_[+1]_49 chrXIII:807969-808550 2.4e-10 38_[-1]_33 chrV:311724-312308 2.7e-10 58_[-1]_13 chrXIV:96031-96474 4.6e-10 40_[-1]_31 chrXV:663499-664117 5.6e-10 55_[-1]_16 chrXIII:586364-586939 5.6e-10 36_[-1]_35 chrXIII:420293-420882 5.6e-10 52_[-1]_19 chrXI:307904-308484 5.6e-10 1_[-1]_70 chrVII:823338-823729 5.6e-10 41_[+1]_30 chrVII:412065-412590 5.6e-10 18_[-1]_53 chrV:438490-438980 5.6e-10 57_[+1]_14 chrXV:353775-354318 6.2e-10 46_[-1]_25 chrXIV:104569-105122 6.2e-10 51_[+1]_20 chrXIII:463314-463876 6.2e-10 49_[+1]_22 chrXII:426863-427454 6.2e-10 64_[+1]_7 chrXI:513110-513613 6.2e-10 22_[-1]_49 chrX:204542-205040 6.2e-10 34_[+1]_37 chrVIII:115835-116424 6.2e-10 29_[-1]_42 chrVII:531265-532002 6.2e-10 67_[+1]_4 chrV:130818-131392 6.2e-10 28_[-1]_43 chrIX:336064-336632 6.2e-10 52_[-1]_19 chrIV:568674-569391 6.2e-10 22_[+1]_49 chrII:266175-266712 6.2e-10 26_[+1]_45 chrXIII:572576-573179 6.9e-10 57_[-1]_14 chrX:422697-423350 6.9e-10 5_[+1]_66 chrX:390815-391351 6.9e-10 11_[-1]_60 chrXV:228092-228665 2.4e-09 45_[+1]_26 chrXIV:632416-632910 2.4e-09 28_[+1]_43 chrXII:975761-976202 2.4e-09 53_[-1]_18 chrVII:730940-731452 2.4e-09 33_[+1]_38 chrVI:137227-137705 2.4e-09 71_[-1] chrIV:884243-884663 2.6e-09 59_[+1]_12 chrXIII:837738-838244 6.8e-09 44_[+1]_27 chrIV:946138-946642 6.8e-09 29_[+1]_42 chrXII:374181-374671 1.3e-08 20_[+1]_51 chrXI:490735-491260 1.3e-08 62_[+1]_9 chrV:492183-492587 1.3e-08 18_[-1]_53 chrIV:1095123-1095662 1.6e-08 29_[-1]_42 chrXVI:856708-857159 1.7e-08 60_[+1]_11 chrXIII:320961-321326 1.7e-08 55_[-1]_16 chrII:642839-643247 3.3e-08 15_[-1]_56 chrVIII:358274-358781 4.9e-08 2_[-1]_69 chrXVI:744072-744634 6.4e-08 21_[+1]_50 chrVII:700218-701261 9.9e-08 36_[+1]_35 chrXIII:362933-363336 2.5e-07 20_[+1]_51 chrVIII:20198-21532 3.9e-07 66_[-1]_5 chrXVI:829022-829319 4.8e-07 36_[+1]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGAYYCCSVKHKDGRG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRGRTCMBSGGTTCGAYYCCSVKHKDGRG width=29 seqs=88 chrXIV:631536-632142 ( 59) GAGGTCCCGGGTTCGAGTCCCGGCTCGCC 1 chrIV:1016969-1017519 ( 15) GGAGACCGGGGTTCGACTCCCCGCTTCGG 1 chrXVI:581840-582384 ( 42) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrXIII:480376-480839 ( 66) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrX:414761-415284 ( 36) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrVI:226434-226926 ( 60) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrV:435567-436016 ( 13) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrIII:151001-151533 ( 69) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrXVI:819137-820088 ( 10) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrXIV:569694-570090 ( 27) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrXII:1051922-1052228 ( 48) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrXII:734588-735130 ( 36) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrVII:738839-739539 ( 26) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrV:443017-443363 ( 64) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrII:197270-197855 ( 25) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrXVI:209811-210566 ( 56) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrXIII:290547-291170 ( 34) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrVII:401409-401620 ( 65) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrV:487064-487599 ( 52) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrV:176870-177445 ( 33) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrIX:370208-370799 ( 5) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrIII:82250-82674 ( 52) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrXVI:860155-860687 ( 48) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrXV:281935-282469 ( 52) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrXIII:131552-132147 ( 28) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrX:531499-532263 ( 37) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrX:374168-374837 ( 56) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrX:355176-355737 ( 9) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrVII:845427-846005 ( 23) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrVII:828415-828997 ( 69) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrVII:735890-736863 ( 55) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrVI:180665-181291 ( 48) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrIV:83331-83817 ( 64) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrII:405684-406228 ( 13) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrIV:1256813-1257298 ( 5) TGGGGCCCGGGTTCGATTCCCGGCTTCCG 1 chrIV:488438-489138 ( 61) AAGATCCCGAGTTCGAACCTCGGTTGGAT 1 chrXV:438433-439016 ( 34) AATGTCAGGGGTTCGAGCCCCCTATGAGG 1 chrXI:578684-579381 ( 48) AATGTCAGGGGTTCGAGCCCCCTATGAGG 1 chrIV:359380-359944 ( 30) AATGTCAGGGGTTCGAGCCCCCTATGAGG 1 chrVIII:134110-134710 ( 2) GACAACCCCGGTTCGAATCCGGGTAGGAC 1 chrIII:168114-168552 ( 20) GACAACCCCGGTTCGAATCCGGGTAGGAC 1 chrXV:464283-464814 ( 23) GAGGCCCTGGGTTCAATTCCCAGCTCGCC 1 chrXIII:807969-808550 ( 39) AACAACCCCAGTTCGAATCCGGGTGGGAC 1 chrV:311724-312308 ( 59) GAGGTCATCGGTTCGATTCCGGTTGCGTC 1 chrXIV:96031-96474 ( 41) GGGGACACGGGTTCGATTCTCGTACCGCT 1 chrXV:663499-664117 ( 56) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrXIII:586364-586939 ( 37) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrXIII:420293-420882 ( 53) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrXI:307904-308484 ( 2) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrVII:823338-823729 ( 42) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrVII:412065-412590 ( 19) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrV:438490-438980 ( 58) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrXV:353775-354318 ( 47) GAGATCATCGGTTCAAATCCGATTGGAAG 1 chrXIV:104569-105122 ( 52) GAGATCATCGGTTCAAATCCGATTGGAAG 1 chrXIII:463314-463876 ( 50) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrXII:426863-427454 ( 65) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrXI:513110-513613 ( 23) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrX:204542-205040 ( 35) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrVIII:115835-116424 ( 30) GAGATCATCGGTTCAAATCCGATTGGAAG 1 chrVII:531265-532002 ( 68) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrV:130818-131392 ( 29) AACAACCCCGGTTCGAATCCGGGTAAGAC 1 chrIX:336064-336632 ( 53) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrIV:568674-569391 ( 23) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrII:266175-266712 ( 27) GAGATCATCGGTTCAAATCCGATTGGAAG 1 chrXIII:572576-573179 ( 58) AAGGTCGAGAGTTCGAACCTCCCCTGGAG 1 chrX:422697-423350 ( 6) AAGGTCGAGAGTTCGAACCTCCCCTGGAG 1 chrX:390815-391351 ( 12) AAGGTCGAGAGTTCGAACCTCCCCTGGAG 1 chrXV:228092-228665 ( 46) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrXIV:632416-632910 ( 29) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrXII:975761-976202 ( 54) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrVII:730940-731452 ( 34) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrVI:137227-137705 ( 72) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrIV:884243-884663 ( 60) ACCGTCGTGGGTTCAAACCCCACCTCGAG 1 chrXIII:837738-838244 ( 45) GAGATCGGGCGTTCGACTCGCCCCCGGGA 1 chrIV:946138-946642 ( 30) GAGATCGGGCGTTCGACTCGCCCCCGGGA 1 chrXII:374181-374671 ( 21) AAGATTCCAGGTTCAAGTCCTGGCGGGGA 1 chrXI:490735-491260 ( 63) AAGATTCCAGGTTCAAGTCCTGGCGGGGA 1 chrV:492183-492587 ( 19) AAGATTCCAGGTTCAAGTCCTGGCGGGGA 1 chrIV:1095123-1095662 ( 30) GAGGTCCTGTGTTCGATCCACAGAGTTCG 1 chrXVI:856708-857159 ( 61) GAGGTCTCCGGTTCGATTCCGGACTCGTC 1 chrXIII:320961-321326 ( 56) GAGGTCTCCGGTTCGATTCCGGACTCGTC 1 chrII:642839-643247 ( 16) TTGGTCCTTAGTTCGATCCTGAGTGCGAG 1 chrVIII:358274-358781 ( 3) GAGGTCCTGTGTTCGATCCACAGAATTCG 1 chrXVI:744072-744634 ( 22) AAGGTCGTTAGTTCAATTCTGACAGGTGG 1 chrVII:700218-701261 ( 37) GGAGGCGCGGGTTCAAACCCCGCGGGTAT 1 chrXIII:362933-363336 ( 21) TGAAACCCTGGTTCGATTCTAGGAGATGG 1 chrVIII:20198-21532 ( 67) TGGAACACGAGTTGAATCCTGAGACTCAT 1 chrXVI:829022-829319 ( 37) GTCACTAGGGGTCCGAATCTCGGATTAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGAYYCCSVKHKDGRG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 41544 bayes= 11.0787 E= 4.3e-376 47 -124 99 -146 92 -105 65 -378 -69 -35 173 -319 35 -1310 168 -1310 -32 -105 -305 103 -1310 197 -1310 -25 13 138 -35 -378 -319 81 104 -32 -319 90 162 -319 -46 -305 195 -378 -1310 -1310 241 -1310 -1310 -1310 -1310 168 -1310 -405 -1310 167 -1310 239 -405 -1310 -19 -1310 195 -1310 168 -1310 -1310 -1310 -87 34 -35 51 -1310 141 -1310 68 -1310 241 -1310 -1310 -378 190 -305 -32 -477 159 104 -319 -32 112 86 -1310 -378 -35 144 3 -25 104 -405 13 -132 4 123 -39 -32 -105 99 -13 -87 4 162 -245 43 -47 112 -319 -245 -5 162 -78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGAYYCCSVKHKDGRG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 88 E= 4.3e-376 0.431818 0.079545 0.375000 0.113636 0.590909 0.090909 0.295455 0.022727 0.193182 0.147727 0.625000 0.034091 0.397727 0.000000 0.602273 0.000000 0.250000 0.090909 0.022727 0.636364 0.000000 0.738636 0.000000 0.261364 0.340909 0.488636 0.147727 0.022727 0.034091 0.329545 0.386364 0.250000 0.034091 0.352273 0.579545 0.034091 0.227273 0.022727 0.727273 0.022727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.011364 0.000000 0.988636 0.000000 0.988636 0.011364 0.000000 0.272727 0.000000 0.727273 0.000000 1.000000 0.000000 0.000000 0.000000 0.170455 0.238636 0.147727 0.443182 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.022727 0.704545 0.022727 0.250000 0.011364 0.568182 0.386364 0.034091 0.250000 0.409091 0.340909 0.000000 0.022727 0.147727 0.511364 0.318182 0.261364 0.386364 0.011364 0.340909 0.125000 0.193182 0.443182 0.238636 0.250000 0.090909 0.375000 0.284091 0.170455 0.193182 0.579545 0.056818 0.420455 0.136364 0.409091 0.034091 0.056818 0.181818 0.579545 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGRTCMBSGGTTCGAYYCCSVKHKDGRG MEME-1 regular expression -------------------------------------------------------------------------------- [AG][AG]G[GA][TA][CT][CA][GCT][GC][GA]GTTC[GA]A[TC][CT]C[CT][CG][CGA][GT][CTA][GT][GTA]G[AG]G -------------------------------------------------------------------------------- Time 324.07 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCYYTWMCCACTRVRCCAH MEME-2 width = 20 sites = 84 llr = 1118 E-value = 4.3e-141 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVRCCAH MEME-2 Description -------------------------------------------------------------------------------- Simplified A 221:1355:2a::434::a3 pos.-specific C 53534114a6:7:22:a7:5 probability G 35121:2::2:::346:::: matrix T ::25463::::2a1:::3:3 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * * * * Relative 1.4 * * * *** Entropy 1.2 * *** **** (19.2 bits) 1.0 * *** **** 0.7 ** ***** ***** 0.5 **** * ****** ****** 0.2 ******************** 0.0 -------------------- Multilevel CGCTTTAACCACTAGGCCAC consensus GCTCCATC A T GAA T A sequence A C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVRCCAH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrXII:784113-784577 - 65 1.35e-11 TAGCAGGCAT CGCCTTAACCACTCGGCCAC TGGGACGGTT chrIV:1150704-1151182 + 23 1.35e-11 TAGCAGGCAT CGCCTTAACCACTCGGCCAC TGGGACTGAA chrXIII:258982-259438 + 54 2.29e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAC chrXII:167733-168242 + 63 2.29e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAT chrX:523812-524411 + 7 2.29e-10 ATCTTT CGCCTTAACCACTCGGCCAA GTTGCCTTTA chrIV:1305408-1305910 - 27 2.29e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCTTAA chrXVI:689336-689859 - 24 2.89e-10 TCAAGTCTGT CGCCTTAACCACTCGGCCAT AGTGCCCAAA chrXVI:856708-857159 - 25 7.25e-10 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCGAAT chrXII:656837-657218 + 4 7.25e-10 GAG CGCGCTACCGACTACGCCAC ACGCCCAATT chrXI:517788-518171 - 65 7.25e-10 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCATAG chrXI:219644-220121 - 69 7.25e-10 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCTATT chrXII:605141-605626 + 74 5.37e-09 ATAAGCACGA AGCTCTAACCACTGAGCTAC ACGAGCA chrXI:490735-491260 - 27 5.37e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAACAAG chrX:617669-618155 - 63 5.37e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAA ACTCCCATTG chrX:233626-234204 - 80 5.37e-09 A CGCCGTGACCATTGGGCCAC GAGGAACAAG chrV:492183-492587 + 64 5.37e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAATAGG chrXII:962816-963319 + 13 1.51e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCGTCG chrXI:83973-84456 - 50 1.51e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCATAC chrX:424253-424720 + 54 1.51e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCATCT chrXIV:104569-105122 - 16 1.77e-08 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCTGAG chrVIII:115835-116424 + 75 1.77e-08 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGC chrXIV:602076-602576 - 42 2.08e-08 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCATTG chrXIV:569694-570090 + 73 2.08e-08 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAT chrVII:115327-115733 - 14 2.43e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAA CAAGGATGAG chrXVI:581840-582384 - 6 5.07e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGG chrV:435567-436016 + 58 5.07e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTCTT chrV:134979-136057 + 4 5.07e-08 ATA CGCGCTACCGATTGCGCCAA CAAGGCTTTT chrIV:1201515-1202010 - 44 5.07e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTATT chrXVI:860155-860687 - 14 5.84e-08 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTGT chrXV:281935-282469 - 18 5.84e-08 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCGCTT chrXV:226416-226922 + 37 5.84e-08 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTGAA chrX:531499-532263 - 3 5.84e-08 TGGCAACGTT GGATTTTACCACTAAACCAC TT chrVI:162014-162404 - 75 5.84e-08 AACGTT GGATTTTACCACTAAACCAC TTGCGCTTGT chrIV:83331-83817 - 30 5.84e-08 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTAAG chrXV:228092-228665 - 9 1.46e-07 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCTA chrXI:74414-74873 - 37 1.46e-07 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCTAAT chrIII:127482-127913 - 75 1.46e-07 TCGCAC GCCTTAACCAACTTGGCCAT GGAGTCATTT chrXVI:559984-560516 + 64 1.65e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTCAA chrXIV:374600-375126 - 62 1.65e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA GTCCGCTTAT chrVIII:358274-358781 + 67 1.65e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrVIII:237747-238146 + 18 1.65e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrIV:1256813-1257298 + 49 1.65e-07 GGGAAGCATG AATTCTAACCACTGAACCAC TTTCGCTAAG chrXIV:546511-547633 - 78 2.09e-07 CGA GAATCATACCACTAGACCAC ACGCCCGATT chrXIII:195933-196310 + 74 2.09e-07 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCT chrXII:92244-92946 - 9 2.09e-07 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCTT chrI:138947-139386 - 42 2.09e-07 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCGTAC chrXI:307904-308484 + 48 3.29e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCACTT chrVII:823338-823729 - 5 3.29e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAA chrVII:412065-412590 + 65 3.29e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCAGTT chrV:438490-438980 - 21 3.29e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTAAT chrX:390815-391351 + 57 4.54e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTAC TGAAGCACTA chrX:542789-543260 + 45 1.67e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTATT chrX:354007-354496 - 49 1.67e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTGAT chrVI:210426-210942 + 48 1.67e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCGT chrVI:167186-167713 - 44 1.67e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCAT chrX:517643-518103 + 36 2.12e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTTAAC chrV:99901-100346 - 66 2.12e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTTAGC chrXV:980124-981325 - 15 2.29e-06 CCCAAAGCGA GAATCATTCCACTAGACCAC ACGCCCATAC chrXI:302680-303242 - 13 2.48e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrVII:878554-879060 + 33 2.48e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrVII:661502-661948 - 80 2.48e-06 A ACGCTCTACCACTAAGCTAA GGAGGCAAAT chrVII:287124-287683 + 77 2.48e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCT chrXIII:131552-132147 + 72 3.09e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCTAA chrVII:735890-736863 - 20 3.09e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCTATT chrXI:46634-47007 + 11 3.32e-06 TACGAGTGCG ATGCCTTACCACTTGGCCAA AAGGGCTGAG chrXIII:463314-463876 - 15 3.57e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGACAAA chrXII:426863-427454 - 30 3.57e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGATAAG chrXI:513110-513613 + 67 3.57e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGAACGT chrX:374168-374837 + 18 3.57e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGAAGAA chrX:355176-355737 - 56 3.57e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGAAGAA chrVII:531265-532002 - 33 3.57e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGAAGTA chrV:130818-131392 + 73 3.57e-06 CAAAACCGAA AGTGATAACCACTACACTAT AAAACCTC chrIV:802536-803030 + 44 3.57e-06 CAAAACCGAA AGTGATAACCACTACACTAT AGGACCGACA chrIII:168114-168552 + 64 3.57e-06 CAAAACCGAA AGTGATAACCACTACACTAT AGGACCAGGA chrII:405684-406228 - 60 3.57e-06 GACAAGCGCC CATTCTGACCATTAAACTAT CACGGAAGAA chrII:350596-351052 - 59 3.57e-06 CAAAACCGAA AGTGATAACCACTACACTAT AAAACCCTTT chrV:77976-79469 - 48 3.82e-06 TCTTGTACAA GGTTCTACCGACGACACCAT CGATGGACCA chrXV:110851-111204 + 31 4.10e-06 GGAAGGGTGG GATGATAACCACTACACTAA CCGCCCGGGT chrXIV:6617-6984 + 25 4.10e-06 CCCACTCGTT ACCCTGCCCCACTCAACCAT ACCACTCCCA chrIII:316232-316594 - 57 4.10e-06 CCCACTCGTT ACCCTGCCCCACTCAACCAT ACCACTCCCA chrII:642839-643247 + 60 5.00e-06 TTGCAATCTG CTGCGCTACCACTGCGCCAT ACGAGCTTTC chrXI:261113-261884 + 73 5.67e-06 ACGACGCTAC CGGTGTTGCGATTAGACCAA CTAGTAAG chrV:42169-42647 - 79 9.60e-06 TT GCACCCGACAAATCAGCCAC TAACTACGAG chrXII:261278-264000 + 68 1.18e-05 GAAGGCGCTG AGCCAAAGCAAATCGGCCAC TTGGGTGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVRCCAH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:784113-784577 1.3e-11 64_[-2]_16 chrIV:1150704-1151182 1.3e-11 22_[+2]_58 chrXIII:258982-259438 2.3e-10 53_[+2]_27 chrXII:167733-168242 2.3e-10 62_[+2]_18 chrX:523812-524411 2.3e-10 6_[+2]_74 chrIV:1305408-1305910 2.3e-10 26_[-2]_54 chrXVI:689336-689859 2.9e-10 23_[-2]_57 chrXVI:856708-857159 7.3e-10 24_[-2]_56 chrXII:656837-657218 7.3e-10 3_[+2]_77 chrXI:517788-518171 7.3e-10 64_[-2]_16 chrXI:219644-220121 7.3e-10 68_[-2]_12 chrXII:605141-605626 5.4e-09 73_[+2]_7 chrXI:490735-491260 5.4e-09 26_[-2]_54 chrX:617669-618155 5.4e-09 62_[-2]_18 chrX:233626-234204 5.4e-09 79_[-2]_1 chrV:492183-492587 5.4e-09 63_[+2]_17 chrXII:962816-963319 1.5e-08 12_[+2]_68 chrXI:83973-84456 1.5e-08 49_[-2]_31 chrX:424253-424720 1.5e-08 53_[+2]_27 chrXIV:104569-105122 1.8e-08 15_[-2]_65 chrVIII:115835-116424 1.8e-08 74_[+2]_6 chrXIV:602076-602576 2.1e-08 41_[-2]_39 chrXIV:569694-570090 2.1e-08 72_[+2]_8 chrVII:115327-115733 2.4e-08 13_[-2]_67 chrXVI:581840-582384 5.1e-08 5_[-2]_75 chrV:435567-436016 5.1e-08 57_[+2]_23 chrV:134979-136057 5.1e-08 3_[+2]_77 chrIV:1201515-1202010 5.1e-08 43_[-2]_37 chrXVI:860155-860687 5.8e-08 13_[-2]_67 chrXV:281935-282469 5.8e-08 17_[-2]_63 chrXV:226416-226922 5.8e-08 36_[+2]_44 chrX:531499-532263 5.8e-08 2_[-2]_78 chrVI:162014-162404 5.8e-08 74_[-2]_6 chrIV:83331-83817 5.8e-08 29_[-2]_51 chrXV:228092-228665 1.5e-07 8_[-2]_72 chrXI:74414-74873 1.5e-07 36_[-2]_44 chrIII:127482-127913 1.5e-07 74_[-2]_6 chrXVI:559984-560516 1.6e-07 63_[+2]_17 chrXIV:374600-375126 1.6e-07 61_[-2]_19 chrVIII:358274-358781 1.6e-07 66_[+2]_14 chrVIII:237747-238146 1.6e-07 17_[+2]_63 chrIV:1256813-1257298 1.6e-07 48_[+2]_32 chrXIV:546511-547633 2.1e-07 77_[-2]_3 chrXIII:195933-196310 2.1e-07 73_[+2]_7 chrXII:92244-92946 2.1e-07 8_[-2]_72 chrI:138947-139386 2.1e-07 41_[-2]_39 chrXI:307904-308484 3.3e-07 47_[+2]_33 chrVII:823338-823729 3.3e-07 4_[-2]_76 chrVII:412065-412590 3.3e-07 64_[+2]_16 chrV:438490-438980 3.3e-07 20_[-2]_60 chrX:390815-391351 4.5e-07 56_[+2]_24 chrX:542789-543260 1.7e-06 44_[+2]_36 chrX:354007-354496 1.7e-06 48_[-2]_32 chrVI:210426-210942 1.7e-06 47_[+2]_33 chrVI:167186-167713 1.7e-06 43_[-2]_37 chrX:517643-518103 2.1e-06 35_[+2]_45 chrV:99901-100346 2.1e-06 65_[-2]_15 chrXV:980124-981325 2.3e-06 14_[-2]_66 chrXI:302680-303242 2.5e-06 12_[-2]_68 chrVII:878554-879060 2.5e-06 32_[+2]_48 chrVII:661502-661948 2.5e-06 79_[-2]_1 chrVII:287124-287683 2.5e-06 76_[+2]_4 chrXIII:131552-132147 3.1e-06 71_[+2]_9 chrVII:735890-736863 3.1e-06 19_[-2]_61 chrXI:46634-47007 3.3e-06 10_[+2]_70 chrXIII:463314-463876 3.6e-06 14_[-2]_66 chrXII:426863-427454 3.6e-06 29_[-2]_51 chrXI:513110-513613 3.6e-06 66_[+2]_14 chrX:374168-374837 3.6e-06 17_[+2]_63 chrX:355176-355737 3.6e-06 55_[-2]_25 chrVII:531265-532002 3.6e-06 32_[-2]_48 chrV:130818-131392 3.6e-06 72_[+2]_8 chrIV:802536-803030 3.6e-06 43_[+2]_37 chrIII:168114-168552 3.6e-06 63_[+2]_17 chrII:405684-406228 3.6e-06 59_[-2]_21 chrII:350596-351052 3.6e-06 58_[-2]_22 chrV:77976-79469 3.8e-06 47_[-2]_33 chrXV:110851-111204 4.1e-06 30_[+2]_50 chrXIV:6617-6984 4.1e-06 24_[+2]_56 chrIII:316232-316594 4.1e-06 56_[-2]_24 chrII:642839-643247 5e-06 59_[+2]_21 chrXI:261113-261884 5.7e-06 72_[+2]_8 chrV:42169-42647 9.6e-06 78_[-2]_2 chrXII:261278-264000 1.2e-05 67_[+2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVRCCAH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCYYTWMCCACTRVRCCAH width=20 seqs=84 chrXII:784113-784577 ( 65) CGCCTTAACCACTCGGCCAC 1 chrIV:1150704-1151182 ( 23) CGCCTTAACCACTCGGCCAC 1 chrXIII:258982-259438 ( 54) CGCCTTAACCACTCGGCCAA 1 chrXII:167733-168242 ( 63) CGCCTTAACCACTCGGCCAA 1 chrX:523812-524411 ( 7) CGCCTTAACCACTCGGCCAA 1 chrIV:1305408-1305910 ( 27) CGCCTTAACCACTCGGCCAA 1 chrXVI:689336-689859 ( 24) CGCCTTAACCACTCGGCCAT 1 chrXVI:856708-857159 ( 25) CGCGCTACCGACTACGCCAC 1 chrXII:656837-657218 ( 4) CGCGCTACCGACTACGCCAC 1 chrXI:517788-518171 ( 65) CGCGCTACCGACTACGCCAC 1 chrXI:219644-220121 ( 69) CGCGCTACCGACTACGCCAC 1 chrXII:605141-605626 ( 74) AGCTCTAACCACTGAGCTAC 1 chrXI:490735-491260 ( 27) CGCCGTGACCATTGGGCCAC 1 chrX:617669-618155 ( 63) GCCTTAAACCACTCGGCCAA 1 chrX:233626-234204 ( 80) CGCCGTGACCATTGGGCCAC 1 chrV:492183-492587 ( 64) CGCCGTGACCATTGGGCCAC 1 chrXII:962816-963319 ( 13) GCCTTAGACCACTCGGCCAA 1 chrXI:83973-84456 ( 50) GCCTTAGACCACTCGGCCAA 1 chrX:424253-424720 ( 54) GCCTTAGACCACTCGGCCAA 1 chrXIV:104569-105122 ( 16) CGCCTTACCAACTTGGCCAT 1 chrVIII:115835-116424 ( 75) CGCCTTACCAACTTGGCCAT 1 chrXIV:602076-602576 ( 42) GCCTTAACCAACTGGGCCAA 1 chrXIV:569694-570090 ( 73) GCCTTAACCAACTGGGCCAA 1 chrVII:115327-115733 ( 14) CGCTCTACCAACTGAGCTAA 1 chrXVI:581840-582384 ( 6) CGCGCTACCGATTGCGCCAA 1 chrV:435567-436016 ( 58) CGCGCTACCGATTGCGCCAA 1 chrV:134979-136057 ( 4) CGCGCTACCGATTGCGCCAA 1 chrIV:1201515-1202010 ( 44) CGCGCTACCGATTGCGCCAA 1 chrXVI:860155-860687 ( 14) GGATTTTACCACTAAACCAC 1 chrXV:281935-282469 ( 18) GGATTTTACCACTAAACCAC 1 chrXV:226416-226922 ( 37) GGATTTTACCACTAAACCAC 1 chrX:531499-532263 ( 3) GGATTTTACCACTAAACCAC 1 chrVI:162014-162404 ( 75) GGATTTTACCACTAAACCAC 1 chrIV:83331-83817 ( 30) GGATTTTACCACTAAACCAC 1 chrXV:228092-228665 ( 9) GCCTTAACCAACTTGGCCAT 1 chrXI:74414-74873 ( 37) GCCTTAACCAACTTGGCCAT 1 chrIII:127482-127913 ( 75) GCCTTAACCAACTTGGCCAT 1 chrXVI:559984-560516 ( 64) CGCTCTCCCAACTGAGCTAA 1 chrXIV:374600-375126 ( 62) CGCTCTCCCAACTGAGCTAA 1 chrVIII:358274-358781 ( 67) CGCTCTCCCAACTGAGCTAA 1 chrVIII:237747-238146 ( 18) CGCTCTCCCAACTGAGCTAA 1 chrIV:1256813-1257298 ( 49) AATTCTAACCACTGAACCAC 1 chrXIV:546511-547633 ( 78) GAATCATACCACTAGACCAC 1 chrXIII:195933-196310 ( 74) GAATCATACCACTAGACCAC 1 chrXII:92244-92946 ( 9) GAATCATACCACTAGACCAC 1 chrI:138947-139386 ( 42) GAATCATACCACTAGACCAC 1 chrXI:307904-308484 ( 48) GCCATAACCGACTAGACCAC 1 chrVII:823338-823729 ( 5) GCCATAACCGACTAGACCAC 1 chrVII:412065-412590 ( 65) GCCATAACCGACTAGACCAC 1 chrV:438490-438980 ( 21) GCCATAACCGACTAGACCAC 1 chrX:390815-391351 ( 57) CGCTCTTCCTACTGAGCTAC 1 chrX:542789-543260 ( 45) CCTTAAACCAACTTGGCTAC 1 chrX:354007-354496 ( 49) CCTTAAACCAACTTGGCTAC 1 chrVI:210426-210942 ( 48) CCTTAAACCAACTTGGCTAC 1 chrVI:167186-167713 ( 44) CCTTAAACCAACTTGGCTAC 1 chrX:517643-518103 ( 36) GCGCGCTTCCACTGCGCCAC 1 chrV:99901-100346 ( 66) GCGCGCTTCCACTGCGCCAC 1 chrXV:980124-981325 ( 15) GAATCATTCCACTAGACCAC 1 chrXI:302680-303242 ( 13) AAGCTCTACCATTGAGCCAC 1 chrVII:878554-879060 ( 33) AAGCTCTACCATTGAGCCAC 1 chrVII:661502-661948 ( 80) ACGCTCTACCACTAAGCTAA 1 chrVII:287124-287683 ( 77) AAGCTCTACCATTGAGCCAC 1 chrXIII:131552-132147 ( 72) ACGCGTTGCCATTACGCCAC 1 chrVII:735890-736863 ( 20) ACGCGTTGCCATTACGCCAC 1 chrXI:46634-47007 ( 11) ATGCCTTACCACTTGGCCAA 1 chrXIII:463314-463876 ( 15) CATTCTGACCATTAAACTAT 1 chrXII:426863-427454 ( 30) CATTCTGACCATTAAACTAT 1 chrXI:513110-513613 ( 67) CATTCTGACCATTAAACTAT 1 chrX:374168-374837 ( 18) CATTCTGACCATTAAACTAT 1 chrX:355176-355737 ( 56) CATTCTGACCATTAAACTAT 1 chrVII:531265-532002 ( 33) CATTCTGACCATTAAACTAT 1 chrV:130818-131392 ( 73) AGTGATAACCACTACACTAT 1 chrIV:802536-803030 ( 44) AGTGATAACCACTACACTAT 1 chrIII:168114-168552 ( 64) AGTGATAACCACTACACTAT 1 chrII:405684-406228 ( 60) CATTCTGACCATTAAACTAT 1 chrII:350596-351052 ( 59) AGTGATAACCACTACACTAT 1 chrV:77976-79469 ( 48) GGTTCTACCGACGACACCAT 1 chrXV:110851-111204 ( 31) GATGATAACCACTACACTAA 1 chrXIV:6617-6984 ( 25) ACCCTGCCCCACTCAACCAT 1 chrIII:316232-316594 ( 57) ACCCTGCCCCACTCAACCAT 1 chrII:642839-643247 ( 60) CTGCGCTACCACTGCGCCAT 1 chrXI:261113-261884 ( 73) CGGTGTTGCGATTAGACCAA 1 chrV:42169-42647 ( 79) GCACCCGACAAATCAGCCAC 1 chrXII:261278-264000 ( 68) AGCCAAAGCAAATCGGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVRCCAH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 46737 bayes= 10.105 E= 4.3e-141 -71 130 87 -1304 -62 66 134 -371 -113 144 -52 -54 -271 72 -28 65 -139 97 -81 38 -19 -98 -298 96 65 -140 -18 -19 78 102 -198 -312 -1304 241 -1304 -1304 -54 169 -18 -471 168 -1304 -1304 -1304 -371 197 -1304 -39 -1304 -1304 -398 166 46 -8 54 -139 10 26 123 -1304 29 -1304 172 -1304 -1304 241 -1304 -1304 -1304 192 -1304 -13 168 -1304 -1304 -1304 -19 134 -1304 -32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVRCCAH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 84 E= 4.3e-141 0.190476 0.464286 0.345238 0.000000 0.202381 0.297619 0.476190 0.023810 0.142857 0.511905 0.130952 0.214286 0.047619 0.309524 0.154762 0.488095 0.119048 0.369048 0.107143 0.404762 0.273810 0.095238 0.023810 0.607143 0.488095 0.071429 0.166667 0.273810 0.535714 0.380952 0.047619 0.035714 0.000000 1.000000 0.000000 0.000000 0.214286 0.607143 0.166667 0.011905 1.000000 0.000000 0.000000 0.000000 0.023810 0.738095 0.000000 0.238095 0.000000 0.000000 0.011905 0.988095 0.428571 0.178571 0.273810 0.119048 0.333333 0.226190 0.440476 0.000000 0.380952 0.000000 0.619048 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.285714 1.000000 0.000000 0.000000 0.000000 0.273810 0.476190 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVRCCAH MEME-2 regular expression -------------------------------------------------------------------------------- [CG][GCA][CT][TC][TC][TA][AT][AC]C[CA]A[CT]T[AG][GAC][GA]C[CT]A[CAT] -------------------------------------------------------------------------------- Time 621.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGGAYTCGAACCWGCGCGGGCAAAGCC MEME-3 width = 29 sites = 11 llr = 380 E-value = 1.7e-065 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGGAYTCGAACCWGCGCGGGCAAAGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:82:8::::aa::3::::1:2:9782:: pos.-specific C :a::::5:7:::a82:a:a:::91:2278 probability G 9:28a2:::a:::::a:a:9a8::3:63: matrix T ::::::5a3::::25:::::::1:::::2 bits 2.4 * * * * **** * 2.2 * * * * **** * 1.9 ** * * * ****** * 1.7 ** ** * ***** ******** * Relative 1.4 ** ** ******* ******** ** Entropy 1.2 ****** ******* ********* * ** (49.8 bits) 1.0 ************** ************** 0.7 ************** ************** 0.5 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GCAGGATTCGAACCTGCGCGGGCAAAGCC consensus C T A G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGAYTCGAACCWGCGCGGGCAAAGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIII:258982-259438 + 6 8.52e-20 CAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrXII:167733-168242 + 15 8.52e-20 AACGACAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrIV:437549-438140 - 23 8.52e-20 GACGACAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrII:226969-227369 - 1 8.52e-20 AACGACAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC chrXVI:689336-689859 - 63 1.74e-17 ACGACACCA GCAGGATTTGAACCAGCGCGGGCAGAGCC CAACAGATTT chrV:288128-288747 + 64 1.74e-17 AACGACACCA GCAGGATTTGAACCAGCGCGGGCAGAGCC CAACAGAT chrIII:227737-228261 - 57 1.74e-17 AACGACACCA GCAGGATTTGAACCAGCGCGGGCAGAGCC CAAGAGATAG chrIV:1305408-1305910 - 67 1.16e-16 CAACT GCAGGACTCGAACCTGCGCGGGCCAAAGC CCAAAAGATT chrXV:274452-275014 - 54 9.95e-15 TGCGTCACAG ACAGGATTCGAACCTGCGCAGGTAAAACC CAATGCCTAA chrXIV:725686-726580 + 59 7.50e-14 ACTGAAGGAT GCGAGGTTCGAACTCGCGCGGACAACCGT CCAACAGATC chrX:424253-424720 + 4 7.50e-14 GAT GCGAGGTTCGAACTCGCGCGGACAACCGT CCAACAGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGAYTCGAACCWGCGCGGGCAAAGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:258982-259438 8.5e-20 5_[+3]_66 chrXII:167733-168242 8.5e-20 14_[+3]_57 chrIV:437549-438140 8.5e-20 22_[-3]_49 chrII:226969-227369 8.5e-20 [-3]_71 chrXVI:689336-689859 1.7e-17 62_[-3]_9 chrV:288128-288747 1.7e-17 63_[+3]_8 chrIII:227737-228261 1.7e-17 56_[-3]_15 chrIV:1305408-1305910 1.2e-16 66_[-3]_5 chrXV:274452-275014 1e-14 53_[-3]_18 chrXIV:725686-726580 7.5e-14 58_[+3]_13 chrX:424253-424720 7.5e-14 3_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGAYTCGAACCWGCGCGGGCAAAGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGGAYTCGAACCWGCGCGGGCAAAGCC width=29 seqs=11 chrXIII:258982-259438 ( 6) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrXII:167733-168242 ( 15) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrIV:437549-438140 ( 23) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrII:226969-227369 ( 1) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrXVI:689336-689859 ( 63) GCAGGATTTGAACCAGCGCGGGCAGAGCC 1 chrV:288128-288747 ( 64) GCAGGATTTGAACCAGCGCGGGCAGAGCC 1 chrIII:227737-228261 ( 57) GCAGGATTTGAACCAGCGCGGGCAGAGCC 1 chrIV:1305408-1305910 ( 67) GCAGGACTCGAACCTGCGCGGGCCAAAGC 1 chrXV:274452-275014 ( 54) ACAGGATTCGAACCTGCGCAGGTAAAACC 1 chrXIV:725686-726580 ( 59) GCGAGGTTCGAACTCGCGCGGACAACCGT 1 chrX:424253-424720 ( 4) GCGAGGTTCGAACTCGCGCGGACAACCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGAYTCGAACCWGCGCGGGCAAAGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 41544 bayes= 13.4162 E= 1.7e-065 -177 -1010 227 -1010 -1010 241 -1010 -1010 139 -1010 -5 -1010 -78 -1010 212 -1010 -1010 -1010 241 -1010 139 -1010 -5 -1010 -1010 127 -1010 81 -1010 -1010 -1010 168 -1010 195 -1010 -19 -1010 -1010 241 -1010 168 -1010 -1010 -1010 168 -1010 -1010 -1010 -1010 241 -1010 -1010 -1010 212 -1010 -78 -19 -5 -1010 81 -1010 -1010 241 -1010 -1010 241 -1010 -1010 -1010 -1010 241 -1010 -1010 241 -1010 -1010 -177 -1010 227 -1010 -1010 -1010 241 -1010 -78 -1010 212 -1010 -1010 227 -1010 -177 154 -105 -1010 -1010 122 -1010 53 -1010 139 -5 -1010 -1010 -78 -5 176 -1010 -1010 195 53 -1010 -1010 212 -1010 -78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGAYTCGAACCWGCGCGGGCAAAGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 11 E= 1.7e-065 0.090909 0.000000 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 0.000000 1.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.000000 1.000000 0.000000 0.727273 0.000000 0.272727 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.181818 0.272727 0.181818 0.000000 0.545455 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 0.909091 0.000000 0.090909 0.909091 0.090909 0.000000 0.000000 0.727273 0.000000 0.272727 0.000000 0.818182 0.181818 0.000000 0.000000 0.181818 0.181818 0.636364 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 0.818182 0.000000 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGAYTCGAACCWGCGCGGGCAAAGCC MEME-3 regular expression -------------------------------------------------------------------------------- GCAGGA[TC]T[CT]GAACC[TA]GCGCGGGCA[AG]AG[CG]C -------------------------------------------------------------------------------- Time 907.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71752-73711 4.92e-02 100 chrI:81934-82270 2.44e-01 100 chrI:138947-139386 7.00e-05 41_[-2(2.09e-07)]_39 chrI:139568-139757 3.03e-01 100 chrI:166171-166599 9.97e-01 100 chrI:181124-181475 3.97e-01 100 chrI:182251-183183 9.71e-02 100 chrI:222918-223088 4.75e-01 100 chrII:9449-10060 7.08e-01 100 chrII:36233-36894 1.37e-02 15_[-3(9.02e-05)]_56 chrII:44987-45359 1.13e-01 71_[-3(9.81e-05)] chrII:59600-61448 8.21e-02 100 chrII:87916-88562 2.36e-01 100 chrII:88963-89505 6.72e-01 100 chrII:89672-90004 7.61e-01 100 chrII:159806-159988 9.17e-01 100 chrII:165075-165433 1.48e-01 100 chrII:167866-169612 5.59e-01 100 chrII:181347-181614 3.82e-01 100 chrII:197270-197855 3.97e-08 24_[+1(4.22e-12)]_47 chrII:226969-227369 3.02e-17 [-3(8.52e-20)]_71 chrII:255115-255732 1.04e-01 100 chrII:256241-257889 3.53e-01 100 chrII:266175-266712 6.48e-07 26_[+1(6.23e-10)]_45 chrII:326434-327071 9.98e-01 100 chrII:332244-333087 1.48e-01 100 chrII:347406-348095 6.08e-01 100 chrII:350596-351052 7.35e-03 58_[-2(3.57e-06)]_22 chrII:393044-394757 9.78e-01 100 chrII:405684-406228 5.25e-11 12_[+1(1.18e-11)]_18_[-2(3.57e-06)]_\ 21 chrII:415517-416078 9.96e-01 100 chrII:476831-477761 4.51e-01 100 chrII:478985-479552 3.43e-01 100 chrII:504533-504737 9.04e-01 100 chrII:530915-532188 4.26e-01 100 chrII:544609-544805 6.56e-01 100 chrII:556484-558120 6.13e-01 100 chrII:592278-593633 5.98e-01 100 chrII:604076-607160 3.39e-01 100 chrII:642839-643247 1.62e-07 15_[-1(3.29e-08)]_15_[+2(5.00e-06)]_\ 21 chrII:644914-645423 5.15e-01 100 chrII:680380-682354 6.63e-01 100 chrIII:77-609 2.39e-01 100 chrIII:844-1062 4.40e-01 100 chrIII:11116-11532 9.16e-01 100 chrIII:13950-15222 8.23e-01 100 chrIII:29552-31183 9.28e-01 100 chrIII:78414-78858 1.99e-01 100 chrIII:82250-82674 2.64e-08 51_[-1(6.62e-12)]_20 chrIII:90850-91187 8.73e-01 100 chrIII:107218-107822 7.94e-01 100 chrIII:123235-123814 9.30e-01 100 chrIII:127482-127913 7.38e-04 74_[-2(1.46e-07)]_6 chrIII:137794-138980 1.23e-01 100 chrIII:142072-142965 6.35e-01 100 chrIII:149517-150269 3.69e-01 100 chrIII:151001-151533 6.74e-09 68_[-1(2.65e-12)]_3 chrIII:163457-163900 6.08e-02 100 chrIII:168114-168552 6.04e-11 19_[-1(1.51e-10)]_15_[+2(3.57e-06)]_\ 17 chrIII:177103-178829 1.00e+00 100 chrIII:227737-228261 5.57e-16 56_[-3(1.74e-17)]_15 chrIII:262629-263128 9.59e-01 100 chrIII:295294-295968 9.13e-01 100 chrIII:308642-309266 3.41e-01 100 chrIII:315596-316052 9.07e-01 100 chrIII:316232-316594 1.66e-02 56_[-2(4.10e-06)]_24 chrIV:15-242 2.51e-01 100 chrIV:83331-83817 7.93e-13 29_[-2(5.84e-08)]_14_[+1(1.18e-11)]_\ 8 chrIV:117132-118227 9.57e-01 100 chrIV:118441-118914 7.01e-01 100 chrIV:129204-131010 9.87e-01 100 chrIV:216602-218078 5.15e-02 100 chrIV:220943-222348 2.01e-01 100 chrIV:229141-230742 4.65e-01 100 chrIV:305649-310185 5.25e-01 100 chrIV:321607-321963 7.80e-01 100 chrIV:322166-323581 6.02e-01 100 chrIV:331243-333307 9.14e-01 100 chrIV:340416-341664 2.73e-01 100 chrIV:355676-356961 5.51e-01 100 chrIV:358013-358470 9.91e-01 100 chrIV:359380-359944 7.76e-07 29_[+1(1.20e-10)]_42 chrIV:410159-410785 2.80e-01 100 chrIV:411253-411654 5.53e-02 100 chrIV:433875-435120 4.29e-01 100 chrIV:437549-438140 2.41e-17 22_[-3(8.52e-20)]_49 chrIV:465265-465528 7.79e-01 100 chrIV:488438-489138 5.67e-09 60_[-1(1.07e-10)]_11 chrIV:489712-491255 7.31e-01 100 chrIV:519650-520120 9.57e-01 100 chrIV:520734-521439 3.16e-01 100 chrIV:568674-569391 2.34e-06 22_[+1(6.23e-10)]_49 chrIV:578991-580760 9.90e-02 100 chrIV:619650-620198 4.19e-01 100 chrIV:644712-645390 3.11e-01 100 chrIV:667697-668267 8.19e-01 100 chrIV:765087-765616 3.24e-01 100 chrIV:802536-803030 1.59e-05 5_[+3(7.09e-05)]_9_[+2(3.57e-06)]_\ 37 chrIV:835760-836258 2.48e-01 100 chrIV:884243-884663 3.02e-09 59_[+1(2.63e-09)]_12 chrIV:913957-916215 2.97e-01 100 chrIV:946138-946642 1.29e-05 29_[+1(6.75e-09)]_42 chrIV:980638-981162 9.67e-01 100 chrIV:992722-993541 5.69e-01 100 chrIV:1005174-1005936 2.35e-01 100 chrIV:1006394-1006693 3.94e-01 100 chrIV:1013407-1013949 3.83e-01 100 chrIV:1016969-1017519 1.11e-09 14_[-1(9.96e-13)]_57 chrIV:1075126-1075753 3.12e-02 34_[-1(4.26e-05)]_37 chrIV:1095123-1095662 2.30e-05 29_[-1(1.60e-08)]_42 chrIV:1150704-1151182 2.24e-07 22_[+2(1.35e-11)]_58 chrIV:1175742-1176249 8.53e-01 100 chrIV:1176422-1176643 2.60e-02 100 chrIV:1201515-1202010 2.42e-04 43_[-2(5.07e-08)]_37 chrIV:1256813-1257298 2.65e-11 4_[-1(7.42e-11)]_15_[+2(1.65e-07)]_\ 32 chrIV:1269900-1270856 1.16e-01 100 chrIV:1300882-1301346 2.69e-01 100 chrIV:1301565-1302428 3.12e-01 100 chrIV:1305408-1305910 3.12e-19 26_[-2(2.29e-10)]_20_[-3(1.16e-16)]_\ 5 chrIV:1352038-1353091 3.32e-01 100 chrIV:1355720-1355997 8.53e-01 100 chrIV:1359185-1361304 4.52e-01 100 chrIV:1401075-1403365 9.78e-02 100 chrIV:1449713-1451638 9.92e-01 100 chrIV:1461424-1461979 7.25e-03 71_[+3(4.41e-05)] chrIX:68256-68500 7.49e-01 100 chrIX:99625-100317 2.88e-01 100 chrIX:174720-175246 4.54e-01 100 chrIX:182739-183739 7.91e-01 100 chrIX:197365-198142 7.50e-01 100 chrIX:210657-211067 9.20e-01 100 chrIX:231217-231659 3.63e-01 100 chrIX:248527-249025 4.76e-01 100 chrIX:254228-254562 3.01e-01 100 chrIX:257370-258133 4.37e-01 100 chrIX:299062-299228 9.51e-01 100 chrIX:300029-300828 3.28e-01 100 chrIX:315932-318294 9.59e-01 100 chrIX:323607-324387 2.86e-01 100 chrIX:325737-326140 9.84e-01 100 chrIX:336064-336632 2.85e-07 52_[-1(6.23e-10)]_19 chrIX:370208-370799 2.43e-08 4_[+1(6.62e-12)]_67 chrIX:391412-392143 1.93e-01 100 chrV:27232-28443 5.22e-01 100 chrV:42169-42647 2.89e-02 78_[-2(9.60e-06)]_2 chrV:53521-54103 2.84e-01 100 chrV:61040-62162 2.41e-01 100 chrV:66950-69308 4.15e-01 100 chrV:77976-79469 4.82e-03 47_[-2(3.82e-06)]_33 chrV:79635-79953 4.60e-01 100 chrV:85105-86948 2.30e-01 100 chrV:99901-100346 8.37e-03 65_[-2(2.12e-06)]_15 chrV:117247-118325 1.73e-03 50_[-1(2.16e-05)]_21 chrV:130818-131392 3.71e-10 28_[-1(6.23e-10)]_15_[+2(3.57e-06)]_\ 8 chrV:134979-136057 6.11e-05 3_[+2(5.07e-08)]_77 chrV:138456-140909 5.21e-01 100 chrV:176870-177445 2.89e-08 32_[+1(6.62e-12)]_39 chrV:207350-208255 4.95e-01 100 chrV:249778-250642 8.01e-01 100 chrV:269200-270699 7.10e-01 100 chrV:288128-288747 7.59e-15 63_[+3(1.74e-17)]_8 chrV:305810-306946 7.52e-01 100 chrV:311724-312308 2.77e-06 58_[-1(2.66e-10)]_13 chrV:321967-323428 9.86e-01 100 chrV:342983-343299 8.41e-01 100 chrV:354702-355488 2.21e-01 100 chrV:362049-362477 9.94e-01 100 chrV:395916-398081 1.44e-01 100 chrV:422770-424338 9.91e-01 100 chrV:431015-431923 9.97e-01 100 chrV:434378-435128 2.79e-01 100 chrV:435567-436016 8.66e-13 12_[-1(2.65e-12)]_16_[+2(5.07e-08)]_\ 23 chrV:438490-438980 3.51e-10 20_[-2(3.29e-07)]_17_[+1(5.62e-10)]_\ 14 chrV:441790-442702 2.30e-01 100 chrV:443017-443363 3.97e-08 63_[-1(4.22e-12)]_8 chrV:460629-462181 7.21e-01 100 chrV:469260-470302 7.08e-01 100 chrV:487064-487599 3.77e-08 51_[-1(6.62e-12)]_20 chrV:492183-492587 5.89e-11 18_[-1(1.27e-08)]_16_[+2(5.37e-09)]_\ 17 chrV:551024-551781 1.51e-01 100 chrVI:64010-65475 6.45e-01 100 chrVI:82530-84444 7.01e-01 100 chrVI:95472-95903 1.23e-01 100 chrVI:100978-101697 9.91e-01 100 chrVI:137227-137705 1.37e-05 71_[-1(2.40e-09)] chrVI:157833-158287 9.82e-01 100 chrVI:162014-162404 3.39e-04 74_[-2(5.84e-08)]_6 chrVI:167186-167713 2.11e-03 43_[-2(1.67e-06)]_37 chrVI:180665-181291 1.87e-08 47_[-1(1.18e-11)]_24 chrVI:191145-191772 3.41e-01 100 chrVI:210426-210942 2.08e-03 47_[+2(1.67e-06)]_33 chrVI:221735-222269 8.00e-01 100 chrVI:222910-224190 9.99e-02 100 chrVI:226434-226926 3.01e-08 59_[-1(2.65e-12)]_12 chrVII:276-1203 9.42e-01 100 chrVII:23878-25467 2.79e-01 100 chrVII:110358-110787 9.39e-01 100 chrVII:115327-115733 4.86e-05 13_[-2(2.43e-08)]_67 chrVII:122004-122960 9.49e-01 100 chrVII:148081-149592 4.59e-01 100 chrVII:149769-150163 5.54e-01 100 chrVII:185355-185927 8.11e-01 100 chrVII:205308-206081 7.97e-02 100 chrVII:254097-254728 7.44e-01 100 chrVII:255202-255826 9.13e-01 100 chrVII:277017-278719 2.94e-01 100 chrVII:287124-287683 8.12e-04 76_[+2(2.48e-06)]_4 chrVII:310352-312267 9.77e-01 100 chrVII:316761-317414 9.98e-01 100 chrVII:319236-320158 8.27e-01 100 chrVII:328395-329316 1.00e+00 100 chrVII:345843-346625 2.78e-01 100 chrVII:364897-366725 1.34e-01 24_[+3(5.82e-05)]_47 chrVII:370116-371876 4.09e-01 100 chrVII:372033-372602 8.25e-01 100 chrVII:397969-398220 3.73e-01 100 chrVII:401409-401620 1.01e-08 64_[-1(6.62e-12)]_7 chrVII:405461-405796 5.07e-01 100 chrVII:412065-412590 1.86e-10 18_[-1(5.62e-10)]_17_[+2(3.29e-07)]_\ 16 chrVII:422506-423588 9.36e-01 100 chrVII:437212-443129 3.23e-01 100 chrVII:479165-482751 2.61e-01 100 chrVII:483434-483669 8.01e-01 100 chrVII:531265-532002 3.94e-09 32_[-2(3.57e-06)]_15_[+1(6.23e-10)]_\ 4 chrVII:533841-535193 9.73e-01 100 chrVII:541706-542193 7.24e-01 100 chrVII:544068-544883 3.37e-01 100 chrVII:545087-546002 9.86e-01 100 chrVII:555054-557505 9.87e-01 100 chrVII:561430-561738 3.24e-01 100 chrVII:599390-601003 5.10e-01 100 chrVII:609319-610053 7.09e-01 100 chrVII:648740-649370 1.77e-01 100 chrVII:661502-661948 1.09e-02 79_[-2(2.48e-06)]_1 chrVII:700218-701261 4.71e-08 36_[+1(9.87e-08)]_35 chrVII:706687-707188 3.72e-01 100 chrVII:726301-728184 9.09e-01 100 chrVII:730940-731452 1.27e-06 33_[+1(2.40e-09)]_38 chrVII:735890-736863 2.36e-10 19_[-2(3.09e-06)]_15_[+1(1.18e-11)]_\ 17 chrVII:738839-739539 3.97e-08 25_[+1(4.22e-12)]_46 chrVII:773837-774740 9.48e-01 100 chrVII:779179-779969 5.10e-01 100 chrVII:786900-788781 6.13e-01 100 chrVII:794083-794587 4.44e-01 100 chrVII:806454-807792 3.20e-01 100 chrVII:823338-823729 3.51e-10 4_[-2(3.29e-07)]_17_[+1(5.62e-10)]_\ 30 chrVII:828415-828997 1.24e-07 68_[-1(1.18e-11)]_3 chrVII:845427-846005 1.30e-07 22_[+1(1.18e-11)]_49 chrVII:856757-857006 3.19e-02 100 chrVII:857179-857662 7.48e-03 15_[+3(4.41e-05)]_56 chrVII:876179-877158 8.64e-01 100 chrVII:878554-879060 1.93e-03 32_[+2(2.48e-06)]_48 chrVII:882428-883902 5.16e-01 100 chrVII:930737-931682 9.91e-01 100 chrVII:968835-969280 1.60e-02 23_[+3(2.93e-05)]_48 chrVII:1003919-1004454 8.12e-01 100 chrVIII:20198-21532 8.69e-04 66_[-1(3.92e-07)]_5 chrVIII:34407-36136 1.82e-02 57_[-3(7.09e-05)]_14 chrVIII:62548-62981 4.32e-01 100 chrVIII:74880-76288 2.00e-01 100 chrVIII:85103-85371 6.64e-01 100 chrVIII:102790-105463 4.07e-01 100 chrVIII:115835-116424 2.32e-11 29_[-1(6.23e-10)]_16_[+2(1.77e-08)]_\ 6 chrVIII:119668-121699 1.45e-01 100 chrVIII:125892-127921 6.52e-01 100 chrVIII:132525-133114 2.41e-01 100 chrVIII:134110-134710 1.04e-06 1_[+1(1.51e-10)]_70 chrVIII:145524-146489 7.82e-02 100 chrVIII:147596-148741 9.77e-01 100 chrVIII:148929-149513 1.00e+00 100 chrVIII:175013-175422 2.36e-01 100 chrVIII:237747-238146 1.66e-04 17_[+2(1.65e-07)]_63 chrVIII:296881-297228 4.68e-01 100 chrVIII:358274-358781 8.26e-09 2_[-1(4.93e-08)]_35_[+2(1.65e-07)]_\ 14 chrVIII:382685-383363 3.92e-01 100 chrVIII:388634-389005 4.52e-01 100 chrVIII:411020-411680 7.91e-01 100 chrVIII:451273-453218 2.15e-01 100 chrVIII:466833-467526 4.21e-02 100 chrVIII:475381-475913 7.62e-01 100 chrVIII:492961-493588 5.94e-01 100 chrVIII:505814-506225 9.77e-01 100 chrVIII:555776-556361 7.21e-01 100 chrVIII:562341-562592 5.18e-01 100 chrX:58993-59438 5.42e-01 100 chrX:73363-75721 8.79e-04 14_[-3(4.91e-06)]_57 chrX:90040-90437 7.58e-01 100 chrX:115824-116265 9.30e-01 100 chrX:139179-140317 5.57e-01 100 chrX:157439-157895 1.87e-01 100 chrX:196876-197448 9.95e-01 100 chrX:204542-205040 2.50e-06 34_[+1(6.23e-10)]_37 chrX:227771-228615 8.42e-01 100 chrX:233626-234204 3.81e-05 79_[-2(5.37e-09)]_1 chrX:348914-349457 9.30e-01 100 chrX:354007-354496 2.11e-03 48_[-2(1.67e-06)]_32 chrX:355176-355737 5.25e-11 8_[+1(1.18e-11)]_18_[-2(3.57e-06)]_\ 25 chrX:374168-374837 5.25e-11 17_[+2(3.57e-06)]_18_[-1(1.18e-11)]_\ 16 chrX:378209-378793 7.39e-01 100 chrX:390365-390568 8.70e-01 100 chrX:390815-391351 7.73e-11 11_[-1(6.90e-10)]_16_[+2(4.54e-07)]_\ 24 chrX:391831-392102 4.19e-01 100 chrX:396374-397013 7.46e-01 100 chrX:414761-415284 3.32e-09 35_[+1(2.65e-12)]_36 chrX:415651-416247 5.82e-04 33_[-1(4.55e-07)]_38 chrX:422697-423350 6.70e-07 5_[+1(6.90e-10)]_66 chrX:424253-424720 6.58e-16 3_[+3(7.50e-14)]_21_[+2(1.51e-08)]_\ 27 chrX:517643-518103 5.78e-04 35_[+2(2.12e-06)]_45 chrX:523812-524411 1.02e-06 6_[+2(2.29e-10)]_74 chrX:531499-532263 1.07e-12 2_[-2(5.84e-08)]_14_[+1(1.18e-11)]_\ 35 chrX:532446-532678 8.35e-01 100 chrX:538032-538874 4.21e-01 100 chrX:539036-539213 7.17e-02 100 chrX:540940-542359 9.19e-01 100 chrX:542789-543260 5.61e-03 44_[+2(1.67e-06)]_36 chrX:607900-609122 4.74e-01 100 chrX:617669-618155 7.20e-06 62_[-2(5.37e-09)]_18 chrX:651135-651601 8.16e-01 100 chrX:651862-653099 2.86e-01 100 chrX:663377-664370 4.72e-01 100 chrX:702947-703658 3.26e-01 100 chrX:745068-745748 1.74e-01 100 chrXI:783-1074 2.95e-01 100 chrXI:46634-47007 5.27e-03 10_[+2(3.32e-06)]_70 chrXI:67741-68398 5.69e-01 100 chrXI:74414-74873 1.16e-05 36_[-2(1.46e-07)]_15_[-1(4.13e-05)] chrXI:83973-84456 6.94e-06 49_[-2(1.51e-08)]_31 chrXI:99769-99958 2.58e-01 100 chrXI:108569-109093 8.76e-01 100 chrXI:140708-141475 7.89e-01 100 chrXI:141705-142770 2.04e-02 39_[-2(7.04e-05)]_41 chrXI:158210-159626 9.96e-01 100 chrXI:162041-162777 5.66e-01 100 chrXI:163326-164412 2.58e-01 100 chrXI:202265-203299 2.33e-01 100 chrXI:219644-220121 2.61e-06 68_[-2(7.25e-10)]_12 chrXI:259217-259961 8.65e-01 100 chrXI:261113-261884 3.77e-03 52_[+2(3.50e-05)]_[+2(5.67e-06)]_8 chrXI:282812-284867 1.09e-01 100 chrXI:302680-303242 1.92e-03 12_[-2(2.48e-06)]_68 chrXI:307904-308484 3.51e-10 1_[-1(5.62e-10)]_17_[+2(3.29e-07)]_\ 33 chrXI:312469-314025 3.77e-01 100 chrXI:326072-327585 2.67e-01 100 chrXI:334147-334934 2.39e-01 100 chrXI:364527-365159 6.60e-01 100 chrXI:382199-382445 1.57e-01 100 chrXI:430671-431662 8.19e-01 100 chrXI:457988-458981 9.22e-01 100 chrXI:490735-491260 7.65e-11 26_[-2(5.37e-09)]_16_[+1(1.27e-08)]_\ 9 chrXI:513110-513613 3.94e-09 22_[-1(6.23e-10)]_15_[+2(3.57e-06)]_\ 14 chrXI:517788-518171 3.84e-06 64_[-2(7.25e-10)]_16 chrXI:558626-559451 1.78e-01 100 chrXI:578684-579381 5.54e-07 47_[+1(1.20e-10)]_24 chrXI:591069-592100 5.87e-01 100 chrXI:617628-619362 9.05e-01 100 chrXI:666020-666179 2.00e-01 100 chrXI:666622-666800 1.52e-01 100 chrXII:39401-40346 6.15e-01 100 chrXII:47484-49457 5.30e-01 100 chrXII:86947-87195 2.22e-01 100 chrXII:92244-92946 7.00e-05 8_[-2(2.09e-07)]_72 chrXII:167733-168242 3.17e-24 14_[+3(8.52e-20)]_19_[+2(2.29e-10)]_\ 18 chrXII:198376-199698 3.42e-01 100 chrXII:201655-202712 2.55e-01 100 chrXII:214647-215067 9.00e-01 100 chrXII:231960-234225 2.69e-01 100 chrXII:241602-242009 3.85e-01 100 chrXII:242206-243470 2.37e-01 100 chrXII:253160-253359 9.11e-01 100 chrXII:261278-264000 7.01e-03 67_[+2(1.18e-05)]_13 chrXII:282443-283993 3.91e-01 100 chrXII:348153-348708 7.17e-01 100 chrXII:366035-366558 3.96e-01 100 chrXII:369639-370266 2.51e-02 19_[+1(4.98e-05)]_52 chrXII:374181-374671 2.29e-05 20_[+1(1.27e-08)]_51 chrXII:416515-417088 2.93e-01 100 chrXII:424228-424438 3.73e-01 100 chrXII:426863-427454 3.94e-09 29_[-2(3.57e-06)]_15_[+1(6.23e-10)]_\ 7 chrXII:448486-449073 8.19e-01 100 chrXII:459605-460731 1.11e-01 100 chrXII:498331-500169 1.82e-01 100 chrXII:522132-522397 9.34e-01 100 chrXII:568039-571051 7.30e-01 100 chrXII:592314-593007 7.58e-01 100 chrXII:605141-605626 7.97e-06 73_[+2(5.37e-09)]_7 chrXII:628090-628850 8.17e-03 40_[-3(4.41e-05)]_31 chrXII:636693-639975 2.96e-02 20_[+1(4.26e-05)]_51 chrXII:656837-657218 1.23e-05 3_[+2(7.25e-10)]_77 chrXII:673529-674950 3.00e-01 100 chrXII:687649-687909 9.92e-01 100 chrXII:710464-710882 9.90e-01 100 chrXII:713147-713698 8.86e-01 100 chrXII:731246-732333 4.67e-01 100 chrXII:734588-735130 3.97e-08 35_[+1(4.22e-12)]_36 chrXII:780538-781884 6.12e-01 100 chrXII:784113-784577 4.43e-09 64_[-2(1.35e-11)]_16 chrXII:793773-795416 9.85e-01 100 chrXII:795592-797445 8.19e-01 100 chrXII:809749-811555 8.22e-01 100 chrXII:818499-820386 5.10e-01 100 chrXII:837681-839411 5.15e-01 100 chrXII:874956-876122 9.31e-01 100 chrXII:897654-899704 8.11e-01 100 chrXII:903398-904428 7.08e-01 100 chrXII:921706-923101 7.12e-01 100 chrXII:930726-931844 1.52e-01 100 chrXII:932084-932527 9.94e-01 100 chrXII:951041-953712 1.14e-01 100 chrXII:962816-963319 1.28e-06 12_[+2(1.51e-08)]_68 chrXII:975761-976202 1.19e-05 53_[-1(2.40e-09)]_18 chrXII:1017660-1019514 2.47e-01 100 chrXII:1028153-1028570 1.00e+00 100 chrXII:1051922-1052228 4.72e-08 47_[-1(4.22e-12)]_24 chrXIII:5478-5660 2.49e-01 100 chrXIII:19001-20510 6.27e-01 100 chrXIII:67572-68002 9.26e-02 100 chrXIII:91689-92107 6.24e-01 100 chrXIII:131552-132147 4.59e-11 27_[-1(1.18e-11)]_15_[+2(3.09e-06)]_\ 9 chrXIII:145870-147589 1.24e-01 100 chrXIII:162969-164332 9.76e-01 100 chrXIII:168181-169045 9.97e-01 100 chrXIII:195933-196310 1.16e-05 73_[+2(2.09e-07)]_7 chrXIII:224102-224457 9.89e-01 100 chrXIII:225270-227726 4.91e-01 100 chrXIII:251764-252392 7.73e-02 100 chrXIII:253332-253573 5.51e-01 100 chrXIII:258982-259438 3.68e-22 5_[+3(8.52e-20)]_19_[+2(2.29e-10)]_\ 27 chrXIII:290547-291170 7.07e-09 33_[+1(6.62e-12)]_38 chrXIII:296750-298920 9.66e-02 100 chrXIII:306541-306841 5.89e-01 100 chrXIII:320961-321326 1.08e-04 55_[-1(1.72e-08)]_16 chrXIII:352050-352910 9.26e-01 100 chrXIII:362933-363336 3.57e-04 20_[+1(2.46e-07)]_51 chrXIII:372158-372669 5.18e-01 100 chrXIII:378869-379635 4.27e-01 100 chrXIII:388265-389254 8.94e-01 100 chrXIII:420293-420882 2.03e-06 52_[-1(5.62e-10)]_19 chrXIII:463314-463876 3.28e-09 14_[-2(3.57e-06)]_15_[+1(6.23e-10)]_\ 22 chrXIII:480376-480839 8.21e-09 65_[-1(2.65e-12)]_6 chrXIII:498958-500777 2.82e-01 100 chrXIII:504897-505263 4.27e-01 100 chrXIII:549852-553456 6.48e-01 100 chrXIII:572576-573179 4.53e-07 57_[-1(6.90e-10)]_14 chrXIII:586364-586939 2.05e-06 36_[-1(5.62e-10)]_35 chrXIII:625880-627156 3.11e-02 100 chrXIII:650836-652955 7.31e-01 100 chrXIII:701752-703274 1.85e-01 100 chrXIII:731808-733148 6.56e-01 100 chrXIII:747673-749079 6.64e-01 100 chrXIII:754424-755264 1.96e-01 100 chrXIII:760416-763159 7.98e-01 100 chrXIII:768165-768445 9.99e-01 100 chrXIII:772909-773253 9.83e-01 100 chrXIII:807969-808550 2.03e-07 38_[-1(2.38e-10)]_33 chrXIII:837738-838244 5.41e-06 44_[+1(6.75e-09)]_27 chrXIII:861163-861434 1.05e-01 100 chrXIII:872680-872959 1.01e-01 100 chrXIII:887120-889175 1.05e-01 100 chrXIII:913879-917180 7.14e-01 100 chrXIV:6617-6984 1.66e-02 24_[+2(4.10e-06)]_56 chrXIV:24045-25100 5.70e-01 100 chrXIV:25271-27562 8.27e-01 100 chrXIV:61930-64517 3.35e-01 100 chrXIV:88956-90151 6.86e-01 100 chrXIV:96031-96474 3.86e-07 40_[-1(4.56e-10)]_31 chrXIV:102570-103189 8.98e-01 100 chrXIV:104569-105122 2.32e-11 15_[-2(1.77e-08)]_16_[+1(6.23e-10)]_\ 20 chrXIV:173779-174667 2.55e-01 100 chrXIV:229236-230855 9.96e-01 100 chrXIV:241172-241771 5.50e-01 100 chrXIV:302612-303792 6.70e-01 100 chrXIV:330648-331088 7.16e-01 100 chrXIV:374600-375126 2.97e-04 61_[-2(1.65e-07)]_19 chrXIV:442792-444813 1.72e-01 100 chrXIV:493514-495830 2.10e-01 100 chrXIV:498945-500762 3.53e-01 100 chrXIV:518838-519142 1.18e-01 100 chrXIV:525068-525315 5.47e-01 100 chrXIV:546511-547633 1.33e-04 77_[-2(2.09e-07)]_3 chrXIV:560213-560915 8.41e-01 100 chrXIV:568052-568628 9.74e-01 100 chrXIV:569694-570090 5.74e-14 26_[-1(4.22e-12)]_17_[+2(2.08e-08)]_\ 8 chrXIV:585482-586626 7.44e-01 100 chrXIV:602076-602576 1.24e-05 41_[-2(2.08e-08)]_39 chrXIV:631536-632142 3.58e-10 58_[-1(9.96e-13)]_13 chrXIV:632416-632910 1.27e-06 28_[+1(2.40e-09)]_43 chrXIV:715815-716625 8.43e-01 100 chrXIV:721252-723199 8.44e-01 100 chrXIV:725686-726580 2.15e-11 58_[+3(7.50e-14)]_13 chrXIV:738820-740121 7.99e-01 100 chrXIV:763949-764261 8.99e-01 100 chrXIV:783672-784323 2.14e-01 100 chrXV:79734-80137 7.26e-01 100 chrXV:80342-81156 9.60e-01 100 chrXV:92698-94800 8.73e-01 100 chrXV:109577-110686 9.21e-01 100 chrXV:110851-111204 7.02e-03 30_[+2(4.10e-06)]_50 chrXV:113557-113993 5.51e-01 100 chrXV:159239-160118 2.67e-01 100 chrXV:160335-160713 7.00e-01 100 chrXV:161118-161688 5.46e-01 100 chrXV:168104-168340 6.25e-02 100 chrXV:216280-216695 2.11e-01 100 chrXV:226416-226922 1.06e-04 36_[+2(5.84e-08)]_44 chrXV:228092-228665 8.60e-10 8_[-2(1.46e-07)]_17_[+1(2.40e-09)]_\ 26 chrXV:252841-253631 5.04e-01 100 chrXV:253809-254719 5.15e-01 100 chrXV:274452-275014 3.65e-13 53_[-3(9.95e-15)]_18 chrXV:281935-282469 4.73e-12 17_[-2(5.84e-08)]_14_[+1(1.18e-11)]_\ 20 chrXV:287519-288429 2.23e-01 100 chrXV:300851-301599 7.28e-01 100 chrXV:340133-340763 9.91e-01 100 chrXV:353775-354318 2.41e-06 46_[-1(6.23e-10)]_25 chrXV:407649-408230 9.93e-01 100 chrXV:438433-439016 2.15e-07 33_[+1(1.20e-10)]_38 chrXV:444663-446671 7.31e-02 34_[+1(8.29e-05)]_37 chrXV:464283-464814 8.18e-07 22_[+1(1.70e-10)]_49 chrXV:487431-487766 9.78e-01 100 chrXV:504793-505489 6.21e-01 100 chrXV:571702-572153 9.23e-01 100 chrXV:593808-594684 9.83e-01 100 chrXV:619690-623711 9.95e-01 100 chrXV:639239-639486 7.11e-01 100 chrXV:663499-664117 2.35e-06 55_[-1(5.62e-10)]_16 chrXV:677929-679149 8.70e-01 100 chrXV:710119-710754 4.65e-01 100 chrXV:759037-759528 9.64e-01 100 chrXV:779699-781013 2.13e-01 100 chrXV:841428-842911 4.94e-01 100 chrXV:853996-854810 5.02e-01 100 chrXV:866517-867327 5.08e-01 100 chrXV:901457-901694 8.81e-01 100 chrXV:925204-925423 7.74e-02 100 chrXV:968133-968405 2.16e-02 47_[+3(4.41e-05)]_24 chrXV:976378-976777 7.24e-01 100 chrXV:978813-979152 2.16e-01 100 chrXV:980124-981325 3.20e-03 14_[-2(2.29e-06)]_66 chrXV:988801-989385 1.86e-01 100 chrXV:1003961-1004992 9.52e-01 100 chrXV:1025724-1026085 7.41e-01 100 chrXV:1027853-1029289 3.98e-01 100 chrXV:1091116-1091290 9.96e-01 100 chrXVI:55840-56431 5.17e-01 100 chrXVI:75335-76754 7.59e-01 100 chrXVI:134884-135848 9.89e-02 100 chrXVI:172854-174035 8.23e-01 100 chrXVI:188378-188927 1.23e-01 100 chrXVI:209811-210566 2.75e-08 55_[-1(6.62e-12)]_16 chrXVI:280557-282971 6.57e-01 100 chrXVI:302652-304291 1.42e-01 100 chrXVI:338614-339393 9.87e-01 100 chrXVI:378657-379008 2.35e-01 100 chrXVI:404552-407921 7.40e-01 100 chrXVI:435060-435334 9.15e-01 100 chrXVI:435517-436202 8.10e-01 100 chrXVI:520125-520677 2.14e-02 41_[+3(6.73e-05)]_30 chrXVI:559984-560516 1.54e-04 63_[+2(1.65e-07)]_17 chrXVI:572176-572864 4.25e-02 100 chrXVI:581840-582384 8.66e-13 5_[-2(5.07e-08)]_16_[+1(2.65e-12)]_\ 30 chrXVI:622129-622873 2.75e-01 100 chrXVI:689336-689859 8.75e-22 23_[-2(2.89e-10)]_19_[-3(1.74e-17)]_\ 9 chrXVI:699854-700707 5.85e-01 100 chrXVI:701881-702336 8.94e-02 100 chrXVI:718247-719538 4.45e-01 100 chrXVI:731630-732322 1.28e-01 100 chrXVI:744072-744634 2.20e-05 21_[+1(6.39e-08)]_50 chrXVI:768998-769835 4.39e-01 100 chrXVI:775623-776202 9.25e-01 100 chrXVI:785672-786274 3.51e-01 100 chrXVI:794474-795983 5.42e-01 100 chrXVI:810573-811127 9.54e-01 100 chrXVI:819137-820088 2.21e-08 9_[+1(4.22e-12)]_62 chrXVI:821623-822182 9.98e-01 100 chrXVI:829022-829319 5.73e-05 36_[+1(4.78e-07)]_35 chrXVI:856708-857159 1.75e-11 24_[-2(7.25e-10)]_16_[+1(1.72e-08)]_\ 11 chrXVI:860155-860687 1.84e-12 13_[-2(5.84e-08)]_14_[+1(1.18e-11)]_\ 24 chrXVI:879593-880585 2.68e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************