******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ACE2/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71810-73254 1.0000 100 chrI:81313-82311 1.0000 100 chrI:138950-139360 1.0000 100 chrI:142200-143200 1.0000 100 chrI:166166-166592 1.0000 100 chrI:181122-181491 1.0000 100 chrI:182190-183220 1.0000 100 chrII:9452-9841 1.0000 100 chrII:36229-36574 1.0000 100 chrII:44796-45374 1.0000 100 chrII:45669-46369 1.0000 100 chrII:60791-62252 1.0000 100 chrII:89665-90161 1.0000 100 chrII:165073-165433 1.0000 100 chrII:167785-168260 1.0000 100 chrII:168784-169606 1.0000 100 chrII:181331-181670 1.0000 100 chrII:197254-197853 1.0000 100 chrII:226966-227342 1.0000 100 chrII:266194-266665 1.0000 100 chrII:326461-327074 1.0000 100 chrII:332290-332909 1.0000 100 chrII:347399-347920 1.0000 100 chrII:350610-351066 1.0000 100 chrII:405684-406296 1.0000 100 chrII:415497-416850 1.0000 100 chrII:476833-477762 1.0000 100 chrII:555727-558172 1.0000 100 chrII:592262-593543 1.0000 100 chrII:603699-606140 1.0000 100 chrII:642819-643254 1.0000 100 chrII:644773-645439 1.0000 100 chrIII:71-1054 1.0000 100 chrIII:30203-31152 1.0000 100 chrIII:57355-60584 1.0000 100 chrIII:82374-82662 1.0000 100 chrIII:90850-91124 1.0000 100 chrIII:123349-123819 1.0000 100 chrIII:127500-127904 1.0000 100 chrIII:142616-142978 1.0000 100 chrIII:149728-150192 1.0000 100 chrIII:150991-151516 1.0000 100 chrIII:163468-163892 1.0000 100 chrIII:168070-168554 1.0000 100 chrIII:177195-178756 1.0000 100 chrIII:227754-228254 1.0000 100 chrIII:294965-295983 1.0000 100 chrIII:316216-316595 1.0000 100 chrIV:6-240 1.0000 100 chrIV:83345-83816 1.0000 100 chrIV:117160-117810 1.0000 100 chrIV:130151-130979 1.0000 100 chrIV:217203-218032 1.0000 100 chrIV:221938-222344 1.0000 100 chrIV:229542-230744 1.0000 100 chrIV:307817-308422 1.0000 100 chrIV:321636-321966 1.0000 100 chrIV:322228-323550 1.0000 100 chrIV:331130-331912 1.0000 100 chrIV:332066-332575 1.0000 100 chrIV:340593-342501 1.0000 100 chrIV:355638-357540 1.0000 100 chrIV:357800-358490 1.0000 100 chrIV:359376-359775 1.0000 100 chrIV:409632-410794 1.0000 100 chrIV:411255-411660 1.0000 100 chrIV:434023-434877 1.0000 100 chrIV:437552-438090 1.0000 100 chrIV:465217-465545 1.0000 100 chrIV:488375-489154 1.0000 100 chrIV:490386-491292 1.0000 100 chrIV:519649-519913 1.0000 100 chrIV:520746-521181 1.0000 100 chrIV:538986-539435 1.0000 100 chrIV:568691-569342 1.0000 100 chrIV:578885-580700 1.0000 100 chrIV:600878-602255 1.0000 100 chrIV:619701-620201 1.0000 100 chrIV:644746-645366 1.0000 100 chrIV:667728-668261 1.0000 100 chrIV:802554-803002 1.0000 100 chrIV:835770-837924 1.0000 100 chrIV:884256-884579 1.0000 100 chrIV:946133-946620 1.0000 100 chrIV:980714-981161 1.0000 100 chrIV:992721-993313 1.0000 100 chrIV:1013525-1013977 1.0000 100 chrIV:1016984-1017472 1.0000 100 chrIV:1075102-1075758 1.0000 100 chrIV:1094931-1095657 1.0000 100 chrIV:1150720-1151156 1.0000 100 chrIV:1175741-1176110 1.0000 100 chrIV:1201514-1202038 1.0000 100 chrIV:1236567-1238011 1.0000 100 chrIV:1256764-1257293 1.0000 100 chrIV:1300369-1300654 1.0000 100 chrIV:1300869-1301337 1.0000 100 chrIV:1305407-1305789 1.0000 100 chrIV:1352038-1353062 1.0000 100 chrIV:1355742-1355985 1.0000 100 chrIV:1359426-1359833 1.0000 100 chrIV:1401162-1402534 1.0000 100 chrIV:1450731-1451221 1.0000 100 chrIV:1461464-1461849 1.0000 100 chrIV:1489380-1489789 1.0000 100 chrIX:68168-68509 1.0000 100 chrIX:99644-100214 1.0000 100 chrIX:174868-175704 1.0000 100 chrIX:183295-183719 1.0000 100 chrIX:197352-198579 1.0000 100 chrIX:210654-210892 1.0000 100 chrIX:247903-249009 1.0000 100 chrIX:253847-254561 1.0000 100 chrIX:257364-257920 1.0000 100 chrIX:299981-300480 1.0000 100 chrIX:315940-316595 1.0000 100 chrIX:323067-324395 1.0000 100 chrIX:325736-326176 1.0000 100 chrIX:336096-336631 1.0000 100 chrIX:370217-371306 1.0000 100 chrIX:391092-392506 1.0000 100 chrV:53510-53944 1.0000 100 chrV:61718-62161 1.0000 100 chrV:67205-68950 1.0000 100 chrV:69111-69315 1.0000 100 chrV:78090-79436 1.0000 100 chrV:85097-86244 1.0000 100 chrV:86402-86960 1.0000 100 chrV:99812-100323 1.0000 100 chrV:117349-118309 1.0000 100 chrV:130855-131379 1.0000 100 chrV:135207-136043 1.0000 100 chrV:138462-139959 1.0000 100 chrV:140225-140927 1.0000 100 chrV:141101-141314 1.0000 100 chrV:176912-177452 1.0000 100 chrV:235719-236987 1.0000 100 chrV:249768-250522 1.0000 100 chrV:270071-270655 1.0000 100 chrV:288059-288765 1.0000 100 chrV:305810-307434 1.0000 100 chrV:311694-312273 1.0000 100 chrV:354706-355343 1.0000 100 chrV:362182-363272 1.0000 100 chrV:395857-396597 1.0000 100 chrV:407343-409570 1.0000 100 chrV:422827-424290 1.0000 100 chrV:424598-425038 1.0000 100 chrV:425203-425533 1.0000 100 chrV:431026-431908 1.0000 100 chrV:434396-434978 1.0000 100 chrV:435602-436013 1.0000 100 chrV:438532-438962 1.0000 100 chrV:441791-442684 1.0000 100 chrV:443009-443364 1.0000 100 chrV:469105-469709 1.0000 100 chrV:470172-470421 1.0000 100 chrV:487095-487595 1.0000 100 chrV:491680-492569 1.0000 100 chrV:551015-551558 1.0000 100 chrVI:64250-65380 1.0000 100 chrVI:95459-95917 1.0000 100 chrVI:101014-102364 1.0000 100 chrVI:136800-137703 1.0000 100 chrVI:157841-158226 1.0000 100 chrVI:161996-162395 1.0000 100 chrVI:167208-167698 1.0000 100 chrVI:180661-181263 1.0000 100 chrVI:190949-191767 1.0000 100 chrVI:210422-211434 1.0000 100 chrVI:220483-222171 1.0000 100 chrVI:223238-224154 1.0000 100 chrVI:224330-225262 1.0000 100 chrVI:226415-227260 1.0000 100 chrVII:110145-110788 1.0000 100 chrVII:115326-115714 1.0000 100 chrVII:121968-122469 1.0000 100 chrVII:122654-122808 1.0000 100 chrVII:148210-149506 1.0000 100 chrVII:185378-185941 1.0000 100 chrVII:205320-205773 1.0000 100 chrVII:254105-254708 1.0000 100 chrVII:277024-277415 1.0000 100 chrVII:287146-287656 1.0000 100 chrVII:310436-312644 1.0000 100 chrVII:319229-320163 1.0000 100 chrVII:328395-329179 1.0000 100 chrVII:364894-366565 1.0000 100 chrVII:370509-371587 1.0000 100 chrVII:401415-401620 1.0000 100 chrVII:405459-405843 1.0000 100 chrVII:411749-412576 1.0000 100 chrVII:422877-423500 1.0000 100 chrVII:437490-439869 1.0000 100 chrVII:440474-444187 1.0000 100 chrVII:479551-482703 1.0000 100 chrVII:483354-483721 1.0000 100 chrVII:531401-531829 1.0000 100 chrVII:533819-535198 1.0000 100 chrVII:541712-542164 1.0000 100 chrVII:544408-544863 1.0000 100 chrVII:555065-555899 1.0000 100 chrVII:561434-561730 1.0000 100 chrVII:576223-577336 1.0000 100 chrVII:648755-649366 1.0000 100 chrVII:661546-661942 1.0000 100 chrVII:700457-701228 1.0000 100 chrVII:706726-707192 1.0000 100 chrVII:726402-726779 1.0000 100 chrVII:730965-731405 1.0000 100 chrVII:736179-736543 1.0000 100 chrVII:738828-739583 1.0000 100 chrVII:774130-774741 1.0000 100 chrVII:779395-779944 1.0000 100 chrVII:788003-788767 1.0000 100 chrVII:794202-794558 1.0000 100 chrVII:823339-823722 1.0000 100 chrVII:828397-828987 1.0000 100 chrVII:845457-846307 1.0000 100 chrVII:856731-857718 1.0000 100 chrVII:876170-878123 1.0000 100 chrVII:878373-879028 1.0000 100 chrVII:882798-883817 1.0000 100 chrVII:930745-931626 1.0000 100 chrVII:1000353-1000573 1.0000 100 chrVII:1003946-1004432 1.0000 100 chrVIII:34429-35074 1.0000 100 chrVIII:35289-36113 1.0000 100 chrVIII:62559-63114 1.0000 100 chrVIII:74758-75900 1.0000 100 chrVIII:84937-85373 1.0000 100 chrVIII:103695-104713 1.0000 100 chrVIII:115834-116398 1.0000 100 chrVIII:125900-126325 1.0000 100 chrVIII:132797-133114 1.0000 100 chrVIII:134131-134794 1.0000 100 chrVIII:145868-146456 1.0000 100 chrVIII:148939-149571 1.0000 100 chrVIII:174811-175401 1.0000 100 chrVIII:237587-238138 1.0000 100 chrVIII:296777-297236 1.0000 100 chrVIII:358289-358787 1.0000 100 chrVIII:382890-383358 1.0000 100 chrVIII:384490-385984 1.0000 100 chrVIII:388657-389008 1.0000 100 chrVIII:451313-453043 1.0000 100 chrVIII:466815-467168 1.0000 100 chrVIII:475557-475911 1.0000 100 chrVIII:505822-506403 1.0000 100 chrVIII:555122-555480 1.0000 100 chrVIII:555764-556924 1.0000 100 chrVIII:562342-562592 1.0000 100 chrX:58969-59408 1.0000 100 chrX:72849-73178 1.0000 100 chrX:73379-74584 1.0000 100 chrX:74892-75728 1.0000 100 chrX:90015-90447 1.0000 100 chrX:107658-108221 1.0000 100 chrX:115804-116258 1.0000 100 chrX:120469-121886 1.0000 100 chrX:139430-140283 1.0000 100 chrX:156557-157177 1.0000 100 chrX:157445-157873 1.0000 100 chrX:197185-197449 1.0000 100 chrX:204556-204957 1.0000 100 chrX:233415-234139 1.0000 100 chrX:348917-349900 1.0000 100 chrX:354008-354451 1.0000 100 chrX:355189-355880 1.0000 100 chrX:374188-374821 1.0000 100 chrX:378029-378804 1.0000 100 chrX:390596-391338 1.0000 100 chrX:396574-396961 1.0000 100 chrX:414769-415218 1.0000 100 chrX:415714-416229 1.0000 100 chrX:422710-423385 1.0000 100 chrX:424256-424722 1.0000 100 chrX:517645-518106 1.0000 100 chrX:523147-524411 1.0000 100 chrX:531587-532473 1.0000 100 chrX:537997-538847 1.0000 100 chrX:540973-542442 1.0000 100 chrX:542766-543275 1.0000 100 chrX:545407-545768 1.0000 100 chrX:607881-608157 1.0000 100 chrX:617713-618170 1.0000 100 chrX:651047-651631 1.0000 100 chrX:702928-703778 1.0000 100 chrX:745061-745749 1.0000 100 chrXI:2-187 1.0000 100 chrXI:766-1075 1.0000 100 chrXI:46714-47030 1.0000 100 chrXI:67795-68046 1.0000 100 chrXI:74400-74822 1.0000 100 chrXI:84010-84458 1.0000 100 chrXI:99752-100012 1.0000 100 chrXI:108743-109125 1.0000 100 chrXI:140787-141298 1.0000 100 chrXI:158177-159311 1.0000 100 chrXI:162137-162772 1.0000 100 chrXI:202461-203300 1.0000 100 chrXI:219649-220124 1.0000 100 chrXI:302694-303357 1.0000 100 chrXI:307920-308444 1.0000 100 chrXI:313233-314007 1.0000 100 chrXI:382189-382501 1.0000 100 chrXI:431381-431678 1.0000 100 chrXI:458013-458949 1.0000 100 chrXI:490703-491398 1.0000 100 chrXI:512763-513613 1.0000 100 chrXI:517789-518069 1.0000 100 chrXI:518867-519179 1.0000 100 chrXI:578766-579358 1.0000 100 chrXI:618748-619270 1.0000 100 chrXI:666612-666809 1.0000 100 chrXII:47561-49232 1.0000 100 chrXII:92304-92912 1.0000 100 chrXII:167769-168245 1.0000 100 chrXII:198665-199701 1.0000 100 chrXII:214644-215071 1.0000 100 chrXII:232214-234061 1.0000 100 chrXII:241643-242019 1.0000 100 chrXII:261305-263955 1.0000 100 chrXII:366023-366810 1.0000 100 chrXII:369684-370247 1.0000 100 chrXII:370498-370988 1.0000 100 chrXII:374195-374667 1.0000 100 chrXII:424176-424561 1.0000 100 chrXII:426906-427474 1.0000 100 chrXII:448523-449008 1.0000 100 chrXII:459601-460694 1.0000 100 chrXII:498220-499933 1.0000 100 chrXII:521562-522447 1.0000 100 chrXII:592359-592808 1.0000 100 chrXII:605141-605663 1.0000 100 chrXII:628185-628856 1.0000 100 chrXII:636737-639948 1.0000 100 chrXII:645865-646083 1.0000 100 chrXII:656854-657214 1.0000 100 chrXII:673528-674917 1.0000 100 chrXII:710341-710898 1.0000 100 chrXII:713146-713631 1.0000 100 chrXII:730922-732316 1.0000 100 chrXII:734595-734980 1.0000 100 chrXII:781110-781881 1.0000 100 chrXII:783878-784524 1.0000 100 chrXII:793777-794210 1.0000 100 chrXII:796404-796855 1.0000 100 chrXII:818502-820295 1.0000 100 chrXII:838058-839366 1.0000 100 chrXII:874901-875614 1.0000 100 chrXII:897257-898774 1.0000 100 chrXII:921702-923697 1.0000 100 chrXII:932086-932529 1.0000 100 chrXII:962836-963277 1.0000 100 chrXII:975752-976198 1.0000 100 chrXII:1011696-1011959 1.0000 100 chrXII:1012169-1013332 1.0000 100 chrXII:1018953-1019631 1.0000 100 chrXII:1028201-1028583 1.0000 100 chrXII:1029126-1029718 1.0000 100 chrXII:1051932-1052233 1.0000 100 chrXIII:5460-5663 1.0000 100 chrXIII:91372-92110 1.0000 100 chrXIII:131567-132123 1.0000 100 chrXIII:145752-146267 1.0000 100 chrXIII:162988-164262 1.0000 100 chrXIII:168237-169034 1.0000 100 chrXIII:195942-196308 1.0000 100 chrXIII:225029-226560 1.0000 100 chrXIII:253339-253636 1.0000 100 chrXIII:258980-259391 1.0000 100 chrXIII:288068-289684 1.0000 100 chrXIII:290569-291146 1.0000 100 chrXIII:296715-298844 1.0000 100 chrXIII:302868-303703 1.0000 100 chrXIII:320982-321327 1.0000 100 chrXIII:352077-353195 1.0000 100 chrXIII:362928-364006 1.0000 100 chrXIII:372181-372666 1.0000 100 chrXIII:379068-379627 1.0000 100 chrXIII:420332-420868 1.0000 100 chrXIII:463336-463863 1.0000 100 chrXIII:480368-480826 1.0000 100 chrXIII:498981-500704 1.0000 100 chrXIII:504892-505201 1.0000 100 chrXIII:550236-553214 1.0000 100 chrXIII:572601-573147 1.0000 100 chrXIII:586325-586915 1.0000 100 chrXIII:731813-733123 1.0000 100 chrXIII:747326-748154 1.0000 100 chrXIII:753222-754985 1.0000 100 chrXIII:768214-768455 1.0000 100 chrXIII:808035-808542 1.0000 100 chrXIII:837737-838270 1.0000 100 chrXIII:861219-861670 1.0000 100 chrXIII:873506-874002 1.0000 100 chrXIV:6617-7001 1.0000 100 chrXIV:62005-64220 1.0000 100 chrXIV:89001-89671 1.0000 100 chrXIV:96030-96478 1.0000 100 chrXIV:102569-103072 1.0000 100 chrXIV:104604-105115 1.0000 100 chrXIV:241378-241896 1.0000 100 chrXIV:302704-303685 1.0000 100 chrXIV:330791-331598 1.0000 100 chrXIV:374645-375135 1.0000 100 chrXIV:413679-414910 1.0000 100 chrXIV:442755-443247 1.0000 100 chrXIV:444263-444811 1.0000 100 chrXIV:495189-495810 1.0000 100 chrXIV:499290-500903 1.0000 100 chrXIV:501476-502752 1.0000 100 chrXIV:518047-519146 1.0000 100 chrXIV:525068-525300 1.0000 100 chrXIV:546563-547651 1.0000 100 chrXIV:560331-560923 1.0000 100 chrXIV:568051-568596 1.0000 100 chrXIV:569683-570093 1.0000 100 chrXIV:602077-602560 1.0000 100 chrXIV:631726-632131 1.0000 100 chrXIV:632416-632924 1.0000 100 chrXIV:657475-658943 1.0000 100 chrXIV:725911-726387 1.0000 100 chrXIV:783698-784323 1.0000 100 chrXV:28758-30882 1.0000 100 chrXV:79728-80148 1.0000 100 chrXV:92822-93821 1.0000 100 chrXV:94074-94803 1.0000 100 chrXV:109568-110024 1.0000 100 chrXV:110275-110641 1.0000 100 chrXV:110864-111592 1.0000 100 chrXV:113599-113883 1.0000 100 chrXV:159147-160123 1.0000 100 chrXV:161103-161705 1.0000 100 chrXV:168095-168389 1.0000 100 chrXV:216285-216698 1.0000 100 chrXV:226444-226906 1.0000 100 chrXV:228115-228536 1.0000 100 chrXV:253781-254138 1.0000 100 chrXV:274451-275025 1.0000 100 chrXV:281971-283330 1.0000 100 chrXV:287852-288444 1.0000 100 chrXV:300897-301895 1.0000 100 chrXV:340150-340629 1.0000 100 chrXV:353920-354306 1.0000 100 chrXV:438468-439018 1.0000 100 chrXV:444645-446387 1.0000 100 chrXV:464276-464955 1.0000 100 chrXV:487430-487771 1.0000 100 chrXV:505009-505493 1.0000 100 chrXV:571734-572147 1.0000 100 chrXV:594307-594655 1.0000 100 chrXV:639148-639508 1.0000 100 chrXV:663380-664088 1.0000 100 chrXV:678698-679165 1.0000 100 chrXV:710120-710530 1.0000 100 chrXV:722990-724687 1.0000 100 chrXV:779666-780990 1.0000 100 chrXV:797021-797503 1.0000 100 chrXV:854020-854750 1.0000 100 chrXV:866421-867847 1.0000 100 chrXV:901446-901643 1.0000 100 chrXV:909386-911550 1.0000 100 chrXV:968066-968463 1.0000 100 chrXV:976376-976710 1.0000 100 chrXV:978794-979164 1.0000 100 chrXV:979742-981016 1.0000 100 chrXV:1004024-1004387 1.0000 100 chrXV:1025734-1026056 1.0000 100 chrXV:1027954-1029348 1.0000 100 chrXV:1041692-1042742 1.0000 100 chrXVI:55837-56429 1.0000 100 chrXVI:75313-76116 1.0000 100 chrXVI:76321-76934 1.0000 100 chrXVI:188150-188925 1.0000 100 chrXVI:209977-210475 1.0000 100 chrXVI:279981-280228 1.0000 100 chrXVI:281538-282959 1.0000 100 chrXVI:302651-304978 1.0000 100 chrXVI:338617-339374 1.0000 100 chrXVI:340524-340767 1.0000 100 chrXVI:378642-378999 1.0000 100 chrXVI:406199-406895 1.0000 100 chrXVI:432636-434114 1.0000 100 chrXVI:435510-436184 1.0000 100 chrXVI:519901-520537 1.0000 100 chrXVI:525789-526962 1.0000 100 chrXVI:559973-560498 1.0000 100 chrXVI:572176-572630 1.0000 100 chrXVI:581843-582282 1.0000 100 chrXVI:622278-623050 1.0000 100 chrXVI:642367-643430 1.0000 100 chrXVI:689379-689854 1.0000 100 chrXVI:699774-700696 1.0000 100 chrXVI:731906-732294 1.0000 100 chrXVI:744077-744572 1.0000 100 chrXVI:768630-769484 1.0000 100 chrXVI:775618-776033 1.0000 100 chrXVI:794485-794834 1.0000 100 chrXVI:795046-796169 1.0000 100 chrXVI:810573-811476 1.0000 100 chrXVI:819338-820320 1.0000 100 chrXVI:822682-824030 1.0000 100 chrXVI:856721-857154 1.0000 100 chrXVI:860155-860707 1.0000 100 chrXVI:879553-880569 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ACE2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ACE2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ACE2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 507 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 50700 N= 507 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ACE2/background): A 0.305 C 0.195 G 0.195 T 0.305 ******************************************************************************** ******************************************************************************** MOTIF RGRWCCSSGGTTCGATYCCSS MEME-1 width = 21 sites = 98 llr = 1585 E-value = 1.0e-302 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGRWCCSSGGTTCGATYCCSS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4233:2:22::::3a2::::2 pos.-specific C 22117543::::a::249854 probability G 466112458a:::7:1:::44 matrix T :::52:21::aa:::56122: bits 2.4 * * 2.1 * * 1.9 * * * 1.6 **** * * Relative 1.4 ******* * Entropy 1.2 * ******* ** (23.3 bits) 0.9 * ******* *** 0.7 ** * * ******* ***** 0.5 *** *********** ***** 0.2 *************** ***** 0.0 --------------------- Multilevel AGGTCCCGGGTTCGATTCCCG consensus GCAATGGC A C GC sequence A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRWCCSSGGTTCGATYCCSS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123349-123819 - 52 3.15e-12 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCCCA chrIV:1256764-1257293 - 39 4.25e-12 TCCCAAGCAT GGGGCCCGGGTTCGATTCCCG GCTTCCGCAT chrXVI:860155-860707 + 39 4.83e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrX:396574-396961 - 18 4.83e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAT chrVI:180661-181263 - 71 4.83e-11 GCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrV:61718-62161 - 10 4.83e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCA chrIV:83345-83816 + 59 4.83e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAA chrXVI:209977-210475 - 25 1.30e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXIII:290569-291146 + 36 1.30e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXI:140787-141298 - 35 1.30e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrVII:541712-542164 + 4 1.30e-10 GTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrVII:401415-401620 - 69 1.30e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:487095-487595 - 45 1.30e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:354706-355343 + 2 1.30e-10 G GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:176912-177452 + 9 1.30e-10 TCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIV:1016984-1017472 - 38 1.30e-10 TCTCACCGTG GAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrIII:82374-82662 - 3 1.30e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GT chrXIV:569683-570093 - 38 1.87e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXII:1051932-1052233 - 48 1.87e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrVII:738828-739583 + 11 1.87e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:551015-551558 - 58 1.87e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:443009-443364 - 75 1.87e-10 CGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrIV:667728-668261 - 72 1.87e-10 TAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrII:197254-197853 + 35 1.87e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrX:414769-415218 + 66 7.12e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrV:435602-436013 - 4 7.12e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TAC chrIX:299981-300480 - 57 7.12e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrIV:1201514-1202038 + 67 7.12e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrXVI:856721-857154 + 58 8.28e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrXIV:96030-96478 - 46 8.28e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCG TACCGCTCAA chrXIII:320982-321327 - 52 8.28e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrX:197185-197449 - 55 8.28e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrVII:779395-779944 + 39 8.28e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCG TACCGCTCAA chrVII:774130-774741 + 7 8.28e-10 TGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrVIII:475557-475911 - 31 1.29e-09 CACACGGCAA AGGTCCCGAGTTCGATCCTCG GTTGGAACAT chrV:130855-131379 - 24 1.48e-09 TTTGATCCGA ACAACCCCGGTTCGAATCCGG GTAAGACCTA chrIV:802554-803002 - 12 1.48e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTC chrIII:168070-168554 - 48 1.48e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrXIII:463336-463863 + 47 7.87e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXII:793777-794210 + 17 7.87e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXII:426906-427474 + 34 7.87e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrX:355189-355880 + 14 7.87e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrX:204556-204957 + 71 7.87e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAG chrVII:544408-544863 - 1 7.87e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC chrIX:336096-336631 - 45 7.87e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrIV:568691-569342 + 40 7.87e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrII:405684-406296 + 62 7.87e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXIII:586325-586915 - 75 8.85e-09 GCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:420332-420868 - 47 8.85e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXI:307920-308444 - 21 8.85e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrX:378029-378804 + 38 8.85e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrVII:823339-823722 + 46 8.85e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrV:438532-438962 + 47 8.85e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrXIII:195942-196308 - 2 9.94e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA G chrXII:92304-92912 + 63 9.94e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCCT chrXV:438468-439018 + 16 1.11e-08 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXI:578766-579358 + 19 1.11e-08 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXIII:808035-808542 - 17 1.54e-08 TCTGATCCGA ACAACCCCAGTTCGAATCCGG GTGGGACCTT chrXIII:379068-379627 - 15 1.91e-08 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTTCAA chrXI:302694-303357 + 19 1.91e-08 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTTCAT chrX:415714-416229 - 19 1.91e-08 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTTCAA chrVII:878373-879028 - 69 1.91e-08 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTTCAT chrVII:287146-287656 - 8 1.91e-08 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTT chrXIII:131567-132123 - 39 3.87e-08 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrX:374188-374821 - 61 3.87e-08 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:736179-736543 + 71 3.87e-08 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTG chrXII:374195-374667 + 17 5.14e-08 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrXI:490703-491398 + 11 5.14e-08 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrIV:619701-620201 - 77 5.14e-08 AGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrXIV:104604-105115 + 39 8.09e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrVIII:115834-116398 - 50 8.09e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrII:266194-266665 + 42 8.09e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrII:326461-327074 + 79 1.24e-07 AGAGTTTGAT CCAACCGAGGTTCGAACTCGG G chrXIII:258980-259391 - 32 1.59e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrV:86402-86960 + 25 1.59e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrIV:437552-438090 + 53 1.59e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrII:226966-227342 + 23 1.59e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrXIV:725911-726387 + 39 1.72e-07 AAATACTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrIV:519649-519913 - 71 1.72e-07 GTTATTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrII:347399-347920 - 53 1.72e-07 TATTACTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrII:9452-9841 - 46 1.72e-07 AAATACTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrXIII:837737-838270 + 34 2.94e-07 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrIV:946133-946620 + 45 2.94e-07 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrXIII:572601-573147 - 68 3.17e-07 CATAATCTGA AGGTCGAGAGTTCGAACCTCC CCTGGAGCAC chrXIV:632416-632924 + 23 5.18e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXII:975752-976198 - 67 5.18e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVII:730965-731405 + 46 5.18e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXVI:559973-560498 - 22 6.76e-07 AGTTATCTGG AGGTCCTGTGTTCGATCCACA GAATTCGCAT chrVIII:237587-238138 - 45 6.76e-07 AGTTATCTGG AGGTCCTGTGTTCGATCCACA GAATTCGCAT chrXV:274451-275025 + 56 8.72e-07 TTGGGTTTTA CCTGCGCAGGTTCGAATCCTG TCTGTGACGC chrXVI:689379-689854 + 51 1.05e-06 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTG CTGGTGTCGT chrVIII:62559-63114 + 11 1.05e-06 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrIII:227754-228254 + 59 1.05e-06 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTG CTGGTGTCGT chrXVI:744077-744572 + 52 1.18e-06 TGTAATGCAA AGGTCGTTAGTTCAATTCTGA CAGGTGGCAA chrXI:84010-84458 + 78 1.40e-06 TGGACGGTTG TCCGCGCGAGTTCGAACCTCG CA chrX:424256-424722 - 2 1.40e-06 TGGACGGTTG TCCGCGCGAGTTCGAACCTCG C chrII:642819-643254 - 30 1.40e-06 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrIV:1175741-1176110 - 2 2.96e-06 CAAAAATGCT CCAGGGGAGGTTCGAACTCTC G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRWCCSSGGTTCGATYCCSS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123349-123819 3.1e-12 51_[-1]_28 chrIV:1256764-1257293 4.2e-12 38_[-1]_41 chrXVI:860155-860707 4.8e-11 38_[+1]_41 chrX:396574-396961 4.8e-11 17_[-1]_62 chrVI:180661-181263 4.8e-11 70_[-1]_9 chrV:61718-62161 4.8e-11 9_[-1]_70 chrIV:83345-83816 4.8e-11 58_[+1]_21 chrXVI:209977-210475 1.3e-10 24_[-1]_55 chrXIII:290569-291146 1.3e-10 35_[+1]_44 chrXI:140787-141298 1.3e-10 34_[-1]_45 chrVII:541712-542164 1.3e-10 3_[+1]_76 chrVII:401415-401620 1.3e-10 68_[-1]_11 chrV:487095-487595 1.3e-10 44_[-1]_35 chrV:354706-355343 1.3e-10 1_[+1]_78 chrV:176912-177452 1.3e-10 8_[+1]_71 chrIV:1016984-1017472 1.3e-10 37_[-1]_42 chrIII:82374-82662 1.3e-10 2_[-1]_77 chrXIV:569683-570093 1.9e-10 37_[-1]_42 chrXII:1051932-1052233 1.9e-10 47_[-1]_32 chrVII:738828-739583 1.9e-10 10_[+1]_69 chrV:551015-551558 1.9e-10 57_[-1]_22 chrV:443009-443364 1.9e-10 74_[-1]_5 chrIV:667728-668261 1.9e-10 71_[-1]_8 chrII:197254-197853 1.9e-10 34_[+1]_45 chrX:414769-415218 7.1e-10 65_[+1]_14 chrV:435602-436013 7.1e-10 3_[-1]_76 chrIX:299981-300480 7.1e-10 56_[-1]_23 chrIV:1201514-1202038 7.1e-10 66_[+1]_13 chrXVI:856721-857154 8.3e-10 57_[+1]_22 chrXIV:96030-96478 8.3e-10 45_[-1]_34 chrXIII:320982-321327 8.3e-10 51_[-1]_28 chrX:197185-197449 8.3e-10 54_[-1]_25 chrVII:779395-779944 8.3e-10 38_[+1]_41 chrVII:774130-774741 8.3e-10 6_[+1]_73 chrVIII:475557-475911 1.3e-09 30_[-1]_49 chrV:130855-131379 1.5e-09 23_[-1]_56 chrIV:802554-803002 1.5e-09 11_[-1]_68 chrIII:168070-168554 1.5e-09 47_[-1]_32 chrXIII:463336-463863 7.9e-09 46_[+1]_33 chrXII:793777-794210 7.9e-09 16_[+1]_63 chrXII:426906-427474 7.9e-09 33_[+1]_46 chrX:355189-355880 7.9e-09 13_[+1]_66 chrX:204556-204957 7.9e-09 70_[+1]_9 chrVII:544408-544863 7.9e-09 [-1]_79 chrIX:336096-336631 7.9e-09 44_[-1]_35 chrIV:568691-569342 7.9e-09 39_[+1]_40 chrII:405684-406296 7.9e-09 61_[+1]_18 chrXIII:586325-586915 8.8e-09 74_[-1]_5 chrXIII:420332-420868 8.8e-09 46_[-1]_33 chrXI:307920-308444 8.8e-09 20_[-1]_59 chrX:378029-378804 8.8e-09 37_[+1]_42 chrVII:823339-823722 8.8e-09 45_[+1]_34 chrV:438532-438962 8.8e-09 46_[+1]_33 chrXIII:195942-196308 9.9e-09 1_[-1]_78 chrXII:92304-92912 9.9e-09 62_[+1]_17 chrXV:438468-439018 1.1e-08 15_[+1]_64 chrXI:578766-579358 1.1e-08 18_[+1]_61 chrXIII:808035-808542 1.5e-08 16_[-1]_63 chrXIII:379068-379627 1.9e-08 14_[-1]_65 chrXI:302694-303357 1.9e-08 18_[+1]_61 chrX:415714-416229 1.9e-08 18_[-1]_61 chrVII:878373-879028 1.9e-08 68_[-1]_11 chrVII:287146-287656 1.9e-08 7_[-1]_72 chrXIII:131567-132123 3.9e-08 38_[-1]_41 chrX:374188-374821 3.9e-08 60_[-1]_19 chrVII:736179-736543 3.9e-08 70_[+1]_9 chrXII:374195-374667 5.1e-08 16_[+1]_63 chrXI:490703-491398 5.1e-08 10_[+1]_69 chrIV:619701-620201 5.1e-08 76_[-1]_3 chrXIV:104604-105115 8.1e-08 38_[+1]_41 chrVIII:115834-116398 8.1e-08 49_[-1]_30 chrII:266194-266665 8.1e-08 41_[+1]_38 chrII:326461-327074 1.2e-07 78_[+1]_1 chrXIII:258980-259391 1.6e-07 31_[-1]_48 chrV:86402-86960 1.6e-07 24_[+1]_55 chrIV:437552-438090 1.6e-07 52_[+1]_27 chrII:226966-227342 1.6e-07 22_[+1]_57 chrXIV:725911-726387 1.7e-07 38_[+1]_41 chrIV:519649-519913 1.7e-07 70_[-1]_9 chrII:347399-347920 1.7e-07 52_[-1]_27 chrII:9452-9841 1.7e-07 45_[-1]_34 chrXIII:837737-838270 2.9e-07 33_[+1]_46 chrIV:946133-946620 2.9e-07 44_[+1]_35 chrXIII:572601-573147 3.2e-07 67_[-1]_12 chrXIV:632416-632924 5.2e-07 22_[+1]_57 chrXII:975752-976198 5.2e-07 66_[-1]_13 chrVII:730965-731405 5.2e-07 45_[+1]_34 chrXVI:559973-560498 6.8e-07 21_[-1]_58 chrVIII:237587-238138 6.8e-07 44_[-1]_35 chrXV:274451-275025 8.7e-07 55_[+1]_24 chrXVI:689379-689854 1e-06 50_[+1]_29 chrVIII:62559-63114 1e-06 10_[+1]_69 chrIII:227754-228254 1e-06 58_[+1]_21 chrXVI:744077-744572 1.2e-06 51_[+1]_28 chrXI:84010-84458 1.4e-06 77_[+1]_2 chrX:424256-424722 1.4e-06 1_[-1]_78 chrII:642819-643254 1.4e-06 29_[-1]_50 chrIV:1175741-1176110 3e-06 1_[-1]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRWCCSSGGTTCGATYCCSS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGRWCCSSGGTTCGATYCCSS width=21 seqs=98 chrIII:123349-123819 ( 52) AGGTCCCGGGTTCGAGTCCCG 1 chrIV:1256764-1257293 ( 39) GGGGCCCGGGTTCGATTCCCG 1 chrXVI:860155-860707 ( 39) GGGCCCCCGGTTCGATTCCGG 1 chrX:396574-396961 ( 18) GGGCCCCCGGTTCGATTCCGG 1 chrVI:180661-181263 ( 71) GGGCCCCCGGTTCGATTCCGG 1 chrV:61718-62161 ( 10) GGGCCCCCGGTTCGATTCCGG 1 chrIV:83345-83816 ( 59) GGGCCCCCGGTTCGATTCCGG 1 chrXVI:209977-210475 ( 25) GAGACCGGGGTTCGACTCCCC 1 chrXIII:290569-291146 ( 36) GAGACCGGGGTTCGACTCCCC 1 chrXI:140787-141298 ( 35) GAGACCGGGGTTCGACTCCCC 1 chrVII:541712-542164 ( 4) GAGACCGGGGTTCGACTCCCC 1 chrVII:401415-401620 ( 69) GAGACCGGGGTTCGACTCCCC 1 chrV:487095-487595 ( 45) GAGACCGGGGTTCGACTCCCC 1 chrV:354706-355343 ( 2) GAGACCGGGGTTCGACTCCCC 1 chrV:176912-177452 ( 9) GAGACCGGGGTTCGACTCCCC 1 chrIV:1016984-1017472 ( 38) GAGACCGGGGTTCGACTCCCC 1 chrIII:82374-82662 ( 3) GAGACCGGGGTTCGACTCCCC 1 chrXIV:569683-570093 ( 38) GGATCAGCGGTTCGATCCCGC 1 chrXII:1051932-1052233 ( 48) GGATCAGCGGTTCGATCCCGC 1 chrVII:738828-739583 ( 11) GGATCAGCGGTTCGATCCCGC 1 chrV:551015-551558 ( 58) GGATCAGCGGTTCGATCCCGC 1 chrV:443009-443364 ( 75) GGATCAGCGGTTCGATCCCGC 1 chrIV:667728-668261 ( 72) GGATCAGCGGTTCGATCCCGC 1 chrII:197254-197853 ( 35) GGATCAGCGGTTCGATCCCGC 1 chrX:414769-415218 ( 66) AGGTTAGGGGTTCGAGCCCCC 1 chrV:435602-436013 ( 4) AGGTTAGGGGTTCGAGCCCCC 1 chrIX:299981-300480 ( 57) AGGTTAGGGGTTCGAGCCCCC 1 chrIV:1201514-1202038 ( 67) AGGTTAGGGGTTCGAGCCCCC 1 chrXVI:856721-857154 ( 58) AGGTCTCCGGTTCGATTCCGG 1 chrXIV:96030-96478 ( 46) GGGACACGGGTTCGATTCTCG 1 chrXIII:320982-321327 ( 52) AGGTCTCCGGTTCGATTCCGG 1 chrX:197185-197449 ( 55) AGGTCTCCGGTTCGATTCCGG 1 chrVII:779395-779944 ( 39) GGGACACGGGTTCGATTCTCG 1 chrVII:774130-774741 ( 7) AGGTCTCCGGTTCGATTCCGG 1 chrVIII:475557-475911 ( 31) AGGTCCCGAGTTCGATCCTCG 1 chrV:130855-131379 ( 24) ACAACCCCGGTTCGAATCCGG 1 chrIV:802554-803002 ( 12) ACAACCCCGGTTCGAATCCGG 1 chrIII:168070-168554 ( 48) ACAACCCCGGTTCGAATCCGG 1 chrXIII:463336-463863 ( 47) CAGATCGGGGTTCAATTCCCC 1 chrXII:793777-794210 ( 17) CAGATCGGGGTTCAATTCCCC 1 chrXII:426906-427474 ( 34) CAGATCGGGGTTCAATTCCCC 1 chrX:355189-355880 ( 14) CAGATCGGGGTTCAATTCCCC 1 chrX:204556-204957 ( 71) CAGATCGGGGTTCAATTCCCC 1 chrVII:544408-544863 ( 1) CAGATCGGGGTTCAATTCCCC 1 chrIX:336096-336631 ( 45) CAGATCGGGGTTCAATTCCCC 1 chrIV:568691-569342 ( 40) CAGATCGGGGTTCAATTCCCC 1 chrII:405684-406296 ( 62) CAGATCGGGGTTCAATTCCCC 1 chrXIII:586325-586915 ( 75) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:420332-420868 ( 47) ACGTCCCCAGTTCGATCCTGG 1 chrXI:307920-308444 ( 21) ACGTCCCCAGTTCGATCCTGG 1 chrX:378029-378804 ( 38) ACGTCCCCAGTTCGATCCTGG 1 chrVII:823339-823722 ( 46) ACGTCCCCAGTTCGATCCTGG 1 chrV:438532-438962 ( 47) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:195942-196308 ( 2) AGGCCCTGGGTTCAATTCCCA 1 chrXII:92304-92912 ( 63) AGGCCCTGGGTTCAATTCCCA 1 chrXV:438468-439018 ( 16) ATGTCAGGGGTTCGAGCCCCC 1 chrXI:578766-579358 ( 19) ATGTCAGGGGTTCGAGCCCCC 1 chrXIII:808035-808542 ( 17) ACAACCCCAGTTCGAATCCGG 1 chrXIII:379068-379627 ( 15) GGGTTGCAGGTTCAATTCCTG 1 chrXI:302694-303357 ( 19) GGGTTGCAGGTTCAATTCCTG 1 chrX:415714-416229 ( 19) GGGTTGCAGGTTCAATTCCTG 1 chrVII:878373-879028 ( 69) GGGTTGCAGGTTCAATTCCTG 1 chrVII:287146-287656 ( 8) GGGTTGCAGGTTCAATTCCTG 1 chrXIII:131567-132123 ( 39) AGATTATGGGTTCGACCCCCA 1 chrX:374188-374821 ( 61) AGATTATGGGTTCGACCCCCA 1 chrVII:736179-736543 ( 71) AGATTATGGGTTCGACCCCCA 1 chrXII:374195-374667 ( 17) AGATTCCAGGTTCAAGTCCTG 1 chrXI:490703-491398 ( 11) AGATTCCAGGTTCAAGTCCTG 1 chrIV:619701-620201 ( 77) AGATTCCAGGTTCAAGTCCTG 1 chrXIV:104604-105115 ( 39) AGATCATCGGTTCAAATCCGA 1 chrVIII:115834-116398 ( 50) AGATCATCGGTTCAAATCCGA 1 chrII:266194-266665 ( 42) AGATCATCGGTTCAAATCCGA 1 chrII:326461-327074 ( 79) CCAACCGAGGTTCGAACTCGG 1 chrXIII:258980-259391 ( 32) CCCGCGCAGGTTCGAGTCCTG 1 chrV:86402-86960 ( 25) CCCGCGCAGGTTCGAGTCCTG 1 chrIV:437552-438090 ( 53) CCCGCGCAGGTTCGAGTCCTG 1 chrII:226966-227342 ( 23) CCCGCGCAGGTTCGAGTCCTG 1 chrXIV:725911-726387 ( 39) GGATGCGAGGTTCGAACTCGC 1 chrIV:519649-519913 ( 71) GGATGCGAGGTTCGAACTCGC 1 chrII:347399-347920 ( 53) GGATGCGAGGTTCGAACTCGC 1 chrII:9452-9841 ( 46) GGATGCGAGGTTCGAACTCGC 1 chrXIII:837737-838270 ( 34) AGATCGGGCGTTCGACTCGCC 1 chrIV:946133-946620 ( 45) AGATCGGGCGTTCGACTCGCC 1 chrXIII:572601-573147 ( 68) AGGTCGAGAGTTCGAACCTCC 1 chrXIV:632416-632924 ( 23) AGATCGTGAGTTCAACCCTCA 1 chrXII:975752-976198 ( 67) AGATCGTGAGTTCAACCCTCA 1 chrVII:730965-731405 ( 46) AGATCGTGAGTTCAACCCTCA 1 chrXVI:559973-560498 ( 22) AGGTCCTGTGTTCGATCCACA 1 chrVIII:237587-238138 ( 45) AGGTCCTGTGTTCGATCCACA 1 chrXV:274451-275025 ( 56) CCTGCGCAGGTTCGAATCCTG 1 chrXVI:689379-689854 ( 51) CCCGCGCTGGTTCAAATCCTG 1 chrVIII:62559-63114 ( 11) GAAACCCTGGTTCGATTCTAG 1 chrIII:227754-228254 ( 59) CCCGCGCTGGTTCAAATCCTG 1 chrXVI:744077-744572 ( 52) AGGTCGTTAGTTCAATTCTGA 1 chrXI:84010-84458 ( 78) TCCGCGCGAGTTCGAACCTCG 1 chrX:424256-424722 ( 2) TCCGCGCGAGTTCGAACCTCG 1 chrII:642819-643254 ( 30) TGGTCCTTAGTTCGATCCTGA 1 chrIV:1175741-1176110 ( 2) CCAGGGGAGGTTCGAACTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRWCCSSGGTTCGATYCCSS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 40560 bayes= 10.796 E= 1.0e-302 49 -9 87 -331 -58 13 152 -390 10 -126 158 -490 -15 -145 -80 83 -1326 185 -194 -32 -51 141 20 -290 -490 113 106 -99 -65 60 123 -258 -90 -326 203 -390 -1326 -1326 236 -1326 -1326 -1326 -1326 171 -1326 -1326 -1326 171 -1326 236 -1326 -1326 -9 -1326 187 -1326 171 -1326 -1326 -1326 -65 -9 -45 65 -1326 99 -1326 101 -1326 227 -1326 -232 -390 199 -326 -73 -490 123 91 -90 -99 106 117 -1326 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRWCCSSGGTTCGATYCCSS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 98 E= 1.0e-302 0.428571 0.183673 0.357143 0.030612 0.204082 0.214286 0.561224 0.020408 0.326531 0.081633 0.581633 0.010204 0.275510 0.071429 0.112245 0.540816 0.000000 0.704082 0.051020 0.244898 0.214286 0.520408 0.224490 0.040816 0.010204 0.428571 0.408163 0.153061 0.193878 0.295918 0.459184 0.051020 0.163265 0.020408 0.795918 0.020408 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.193878 0.183673 0.142857 0.479592 0.000000 0.387755 0.000000 0.612245 0.000000 0.938776 0.000000 0.061224 0.020408 0.775510 0.020408 0.183673 0.010204 0.459184 0.367347 0.163265 0.153061 0.408163 0.438776 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRWCCSSGGTTCGATYCCSS MEME-1 regular expression -------------------------------------------------------------------------------- [AG][GCA][GA][TA][CT][CGA][CG][GC]GGTTC[GA]AT[TC]CC[CG][GC] -------------------------------------------------------------------------------- Time 241.04 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCYYWAMCCACTVVRCYAHV MEME-2 width = 21 sites = 86 llr = 1151 E-value = 3.2e-152 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCYYWAMCCACTVVRCYAHV MEME-2 Description -------------------------------------------------------------------------------- Simplified A 221:1355:3a::433::a43 pos.-specific C 54633114a6:8:23:a7:33 probability G 44121:2::1:::346::::3 matrix T ::25562::::2a1:::3:31 bits 2.4 * * 2.1 * * 1.9 * * 1.6 * * * * * Relative 1.4 * *** * * Entropy 1.2 * *** *** (19.3 bits) 0.9 ***** **** 0.7 ** ****** ***** 0.5 **** ****** ***** 0.2 ************* ******* 0.0 --------------------- Multilevel CGCTTTAACCACTAGGCCAAA consensus GCTCCATC A T GAA T TC sequence C CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWAMCCACTVVRCYAHV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:258980-259391 + 79 6.02e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG T chrXII:167769-168245 + 43 6.02e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATATG chrIV:437552-438090 - 6 6.02e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCC chrXVI:689379-689854 - 4 1.94e-10 TCAAGTCTGT CGCCTTAACCACTCGGCCATA GTG chrXII:592359-592808 + 61 8.77e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrX:617713-618170 - 33 8.77e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrXII:962836-963277 + 24 1.38e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTCGA chrXI:84010-84458 - 29 1.38e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCATACA chrX:424256-424722 + 51 1.38e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCATCTT chrIV:519649-519913 - 17 1.38e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTAAA chrIV:1150720-1151156 + 28 1.71e-09 TAGCAGGCAT CGCCTTAACCACTCGGCCACT GGGACTGAAA chrXIV:602077-602560 - 49 2.11e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATTGT chrXIV:569683-570093 + 77 2.11e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGA chrXII:734595-734980 - 70 2.11e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAAACT chrIX:183295-183719 + 31 2.11e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAGGAA chrXVI:856721-857154 - 20 5.60e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCGAATC chrXI:219649-220124 - 64 5.60e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCTATTT chrVII:115326-115714 - 23 6.72e-09 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrIV:359376-359775 - 57 6.72e-09 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXV:353920-354306 + 25 9.58e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCAGTAA chrXIV:104604-105115 - 1 9.58e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA chrX:58969-59408 + 9 9.58e-09 TAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTTCTA chrIII:294965-295983 - 65 9.58e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTTAAT chrII:266194-266665 - 4 9.58e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAA chrXII:605141-605663 + 55 1.59e-08 ATAAGCACGA AGCTCTAACCACTGAGCTACA CGAGCATTTT chrXV:228115-228536 - 61 1.87e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTAATA chrXI:74400-74822 - 68 1.87e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTAATT chrVII:730965-731405 - 7 1.87e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCT chrIII:127500-127904 - 69 1.87e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCATTTT chrXV:340150-340629 + 7 2.97e-08 GCCAGA CGCCGTGACCATTGGGCCACG AGGAACAGAT chrXVI:581843-582282 - 55 6.10e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTT chrX:414769-415218 - 28 6.10e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTAATT chrV:435602-436013 + 42 6.10e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTA chrIV:1352038-1353062 + 13 6.10e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrIV:1201514-1202038 - 29 6.10e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrXIV:374645-375135 - 34 7.98e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAG TCCGCTTATT chrXVI:559973-560498 + 79 1.17e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA T chrVIII:358289-358787 + 56 1.17e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACT chrII:36229-36574 - 52 1.17e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACA chrXIV:442755-443247 - 60 2.98e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrXI:307920-308444 + 60 2.98e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTTA chrVII:823339-823722 - 7 2.98e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCA chrVII:205320-205773 - 30 2.98e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrV:438532-438962 - 8 2.98e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCTA chrX:542766-543275 + 49 6.11e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTATTT chrX:354008-354451 - 70 6.11e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTGATA chrVI:167208-167698 - 39 6.11e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTCATT chrXIV:546563-547651 - 42 6.72e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGATTA chrXIII:195942-196308 + 70 6.72e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCTTGTG chrI:138950-139360 - 52 6.72e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGTACT chrXVI:860155-860707 - 3 8.87e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TG chrXV:226444-226906 + 31 8.87e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTGAAT chrX:396574-396961 + 54 8.87e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTACT chrV:61718-62161 + 46 8.87e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTACT chrIV:83345-83816 - 23 8.87e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTAAGT chrXVI:744077-744572 - 15 1.37e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCTTTTA chrVIII:466815-467168 - 54 1.37e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCTAAAA chrVII:661546-661942 - 60 1.37e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCAAATT chrIV:1256764-1257293 + 76 1.49e-06 GGGAAGCATG AATTCTAACCACTGAACCACT TTCG chrIII:71-1054 + 35 1.61e-06 CCTCCAACTA CCCATATCCAACTCCACTACC GCTTACCCTA chrVII:779395-779944 - 2 2.20e-06 GGAAGGGTGG GATGATAACCACTACACTAAC C chrXV:571734-572147 - 73 2.55e-06 AAGCGCC CATTCTGACCATTAAACTATC ACGGATTTTA chrXIII:463336-463863 - 10 2.55e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGACAAA chrXI:382189-382501 + 62 2.55e-06 CGTCAGTAAC CGTTCCACCCATTCCTCCACG GTATGTAGAT chrX:374188-374821 + 16 2.55e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrX:204556-204957 - 34 2.55e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGATTTTT chrVII:544408-544863 + 38 2.55e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrVII:531401-531829 - 50 2.55e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGTAA chrIV:568691-569342 - 3 2.55e-06 GACAAGCGCC CATTCTGACCATTAAACTATC AC chrII:405684-406296 - 25 2.55e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrXIII:808035-808542 + 54 2.75e-06 CAGAACCGAA AGTGATAACCACTACACTATA GGACCTTTTT chrV:130855-131379 + 61 2.75e-06 CAAAACCGAA AGTGATAACCACTACACTATA AAACCTCTTA chrIV:802554-803002 + 49 2.75e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCGACAA chrIV:520746-521181 - 64 2.75e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCCTAAA chrII:350610-351066 - 44 2.75e-06 CAAAACCGAA AGTGATAACCACTACACTATA AAACCCTTTT chrXIV:6617-7001 + 16 3.17e-06 CCCACTCGTT ACCCTGCCCCACTCAACCATA CCACTCCCAA chrIII:316216-316595 - 64 3.17e-06 CCCACTCGTT ACCCTGCCCCACTCAACCATA CCACTCCCAA chrV:78090-79436 - 6 3.39e-06 TCTTGTACAA GGTTCTACCGACGACACCATC GATGG chrX:517645-518106 + 34 3.63e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCACG GCGCTTAACT chrIII:149728-150192 - 15 3.63e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCACG GCGCTCAACA chrVII:287146-287656 + 79 3.89e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC G chrXI:2-187 + 13 4.73e-06 CACACCCACA CACCACACCCACTACTCTAAC CCTATTCTAA chrXVI:775618-776033 + 36 5.04e-06 TTGCAATCTG CTGCGCTACCACTGCGCCATA CGAGCTTTTG chrII:642819-643254 + 67 5.04e-06 TTGCAATCTG CTGCGCTACCACTGCGCCATA CGAGCTTTCT chrXIII:131567-132123 + 76 9.03e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAG chrVII:736179-736543 - 34 9.03e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWAMCCACTVVRCYAHV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:258980-259391 6e-11 78_[+2]_1 chrXII:167769-168245 6e-11 42_[+2]_37 chrIV:437552-438090 6e-11 5_[-2]_74 chrXVI:689379-689854 1.9e-10 3_[-2]_76 chrXII:592359-592808 8.8e-10 60_[+2]_19 chrX:617713-618170 8.8e-10 32_[-2]_47 chrXII:962836-963277 1.4e-09 23_[+2]_56 chrXI:84010-84458 1.4e-09 28_[-2]_51 chrX:424256-424722 1.4e-09 50_[+2]_29 chrIV:519649-519913 1.4e-09 16_[-2]_63 chrIV:1150720-1151156 1.7e-09 27_[+2]_52 chrXIV:602077-602560 2.1e-09 48_[-2]_31 chrXIV:569683-570093 2.1e-09 76_[+2]_3 chrXII:734595-734980 2.1e-09 69_[-2]_10 chrIX:183295-183719 2.1e-09 30_[+2]_49 chrXVI:856721-857154 5.6e-09 19_[-2]_60 chrXI:219649-220124 5.6e-09 63_[-2]_16 chrVII:115326-115714 6.7e-09 22_[-2]_57 chrIV:359376-359775 6.7e-09 56_[-2]_23 chrXV:353920-354306 9.6e-09 24_[+2]_55 chrXIV:104604-105115 9.6e-09 [-2]_79 chrX:58969-59408 9.6e-09 8_[+2]_71 chrIII:294965-295983 9.6e-09 64_[-2]_15 chrII:266194-266665 9.6e-09 3_[-2]_76 chrXII:605141-605663 1.6e-08 54_[+2]_25 chrXV:228115-228536 1.9e-08 60_[-2]_19 chrXI:74400-74822 1.9e-08 67_[-2]_12 chrVII:730965-731405 1.9e-08 6_[-2]_73 chrIII:127500-127904 1.9e-08 68_[-2]_11 chrXV:340150-340629 3e-08 6_[+2]_73 chrXVI:581843-582282 6.1e-08 54_[-2]_25 chrX:414769-415218 6.1e-08 27_[-2]_52 chrV:435602-436013 6.1e-08 41_[+2]_38 chrIV:1352038-1353062 6.1e-08 12_[+2]_67 chrIV:1201514-1202038 6.1e-08 28_[-2]_51 chrXIV:374645-375135 8e-08 33_[-2]_46 chrXVI:559973-560498 1.2e-07 78_[+2]_1 chrVIII:358289-358787 1.2e-07 55_[+2]_24 chrII:36229-36574 1.2e-07 51_[-2]_28 chrXIV:442755-443247 3e-07 59_[-2]_20 chrXI:307920-308444 3e-07 59_[+2]_20 chrVII:823339-823722 3e-07 6_[-2]_73 chrVII:205320-205773 3e-07 29_[-2]_50 chrV:438532-438962 3e-07 7_[-2]_72 chrX:542766-543275 6.1e-07 48_[+2]_31 chrX:354008-354451 6.1e-07 69_[-2]_10 chrVI:167208-167698 6.1e-07 38_[-2]_41 chrXIV:546563-547651 6.7e-07 41_[-2]_38 chrXIII:195942-196308 6.7e-07 69_[+2]_10 chrI:138950-139360 6.7e-07 51_[-2]_28 chrXVI:860155-860707 8.9e-07 2_[-2]_77 chrXV:226444-226906 8.9e-07 30_[+2]_49 chrX:396574-396961 8.9e-07 53_[+2]_26 chrV:61718-62161 8.9e-07 45_[+2]_34 chrIV:83345-83816 8.9e-07 22_[-2]_57 chrXVI:744077-744572 1.4e-06 14_[-2]_65 chrVIII:466815-467168 1.4e-06 53_[-2]_26 chrVII:661546-661942 1.4e-06 59_[-2]_20 chrIV:1256764-1257293 1.5e-06 75_[+2]_4 chrIII:71-1054 1.6e-06 34_[+2]_45 chrVII:779395-779944 2.2e-06 1_[-2]_78 chrXV:571734-572147 2.6e-06 72_[-2]_7 chrXIII:463336-463863 2.6e-06 9_[-2]_70 chrXI:382189-382501 2.6e-06 61_[+2]_18 chrX:374188-374821 2.6e-06 15_[+2]_64 chrX:204556-204957 2.6e-06 33_[-2]_46 chrVII:544408-544863 2.6e-06 37_[+2]_42 chrVII:531401-531829 2.6e-06 49_[-2]_30 chrIV:568691-569342 2.6e-06 2_[-2]_77 chrII:405684-406296 2.6e-06 24_[-2]_55 chrXIII:808035-808542 2.7e-06 53_[+2]_26 chrV:130855-131379 2.7e-06 60_[+2]_19 chrIV:802554-803002 2.7e-06 48_[+2]_31 chrIV:520746-521181 2.7e-06 63_[-2]_16 chrII:350610-351066 2.7e-06 43_[-2]_36 chrXIV:6617-7001 3.2e-06 15_[+2]_64 chrIII:316216-316595 3.2e-06 63_[-2]_16 chrV:78090-79436 3.4e-06 5_[-2]_74 chrX:517645-518106 3.6e-06 33_[+2]_46 chrIII:149728-150192 3.6e-06 14_[-2]_65 chrVII:287146-287656 3.9e-06 78_[+2]_1 chrXI:2-187 4.7e-06 12_[+2]_67 chrXVI:775618-776033 5e-06 35_[+2]_44 chrII:642819-643254 5e-06 66_[+2]_13 chrXIII:131567-132123 9e-06 75_[+2]_4 chrVII:736179-736543 9e-06 33_[-2]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWAMCCACTVVRCYAHV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCYYWAMCCACTVVRCYAHV width=21 seqs=86 chrXIII:258980-259391 ( 79) CGCCTTAACCACTCGGCCAAG 1 chrXII:167769-168245 ( 43) CGCCTTAACCACTCGGCCAAG 1 chrIV:437552-438090 ( 6) CGCCTTAACCACTCGGCCAAG 1 chrXVI:689379-689854 ( 4) CGCCTTAACCACTCGGCCATA 1 chrXII:592359-592808 ( 61) GCCTTAAACCACTCGGCCAAA 1 chrX:617713-618170 ( 33) GCCTTAAACCACTCGGCCAAA 1 chrXII:962836-963277 ( 24) GCCTTAGACCACTCGGCCAAC 1 chrXI:84010-84458 ( 29) GCCTTAGACCACTCGGCCAAC 1 chrX:424256-424722 ( 51) GCCTTAGACCACTCGGCCAAC 1 chrIV:519649-519913 ( 17) GCCTTAGACCACTCGGCCAAC 1 chrIV:1150720-1151156 ( 28) CGCCTTAACCACTCGGCCACT 1 chrXIV:602077-602560 ( 49) GCCTTAACCAACTGGGCCAAG 1 chrXIV:569683-570093 ( 77) GCCTTAACCAACTGGGCCAAG 1 chrXII:734595-734980 ( 70) GCCTTAACCAACTGGGCCAAG 1 chrIX:183295-183719 ( 31) GCCTTAACCAACTGGGCCAAG 1 chrXVI:856721-857154 ( 20) CGCGCTACCGACTACGCCACA 1 chrXI:219649-220124 ( 64) CGCGCTACCGACTACGCCACA 1 chrVII:115326-115714 ( 23) CGCTCTACCAACTGAGCTAAC 1 chrIV:359376-359775 ( 57) CGCTCTACCAACTGAGCTAAC 1 chrXV:353920-354306 ( 25) CGCCTTACCAACTTGGCCATA 1 chrXIV:104604-105115 ( 1) CGCCTTACCAACTTGGCCATA 1 chrX:58969-59408 ( 9) CGCCTTACCAACTTGGCCATA 1 chrIII:294965-295983 ( 65) CGCCTTACCAACTTGGCCATA 1 chrII:266194-266665 ( 4) CGCCTTACCAACTTGGCCATA 1 chrXII:605141-605663 ( 55) AGCTCTAACCACTGAGCTACA 1 chrXV:228115-228536 ( 61) GCCTTAACCAACTTGGCCATG 1 chrXI:74400-74822 ( 68) GCCTTAACCAACTTGGCCATG 1 chrVII:730965-731405 ( 7) GCCTTAACCAACTTGGCCATG 1 chrIII:127500-127904 ( 69) GCCTTAACCAACTTGGCCATG 1 chrXV:340150-340629 ( 7) CGCCGTGACCATTGGGCCACG 1 chrXVI:581843-582282 ( 55) CGCGCTACCGATTGCGCCAAC 1 chrX:414769-415218 ( 28) CGCGCTACCGATTGCGCCAAC 1 chrV:435602-436013 ( 42) CGCGCTACCGATTGCGCCAAC 1 chrIV:1352038-1353062 ( 13) CGCGCTACCGATTGCGCCAAC 1 chrIV:1201514-1202038 ( 29) CGCGCTACCGATTGCGCCAAC 1 chrXIV:374645-375135 ( 34) CGCTCTCCCAACTGAGCTAAG 1 chrXVI:559973-560498 ( 79) CGCTCTCCCAACTGAGCTAAA 1 chrVIII:358289-358787 ( 56) CGCTCTCCCAACTGAGCTAAA 1 chrII:36229-36574 ( 52) CGCTCTCCCAACTGAGCTAAA 1 chrXIV:442755-443247 ( 60) GCCTTAGACCGCTCGGCCAAA 1 chrXI:307920-308444 ( 60) GCCATAACCGACTAGACCACG 1 chrVII:823339-823722 ( 7) GCCATAACCGACTAGACCACG 1 chrVII:205320-205773 ( 30) GCCTTAGACCGCTCGGCCAAA 1 chrV:438532-438962 ( 8) GCCATAACCGACTAGACCACG 1 chrX:542766-543275 ( 49) CCTTAAACCAACTTGGCTACC 1 chrX:354008-354451 ( 70) CCTTAAACCAACTTGGCTACC 1 chrVI:167208-167698 ( 39) CCTTAAACCAACTTGGCTACC 1 chrXIV:546563-547651 ( 42) GAATCATACCACTAGACCACA 1 chrXIII:195942-196308 ( 70) GAATCATACCACTAGACCACA 1 chrI:138950-139360 ( 52) GAATCATACCACTAGACCACA 1 chrXVI:860155-860707 ( 3) GGATTTTACCACTAAACCACT 1 chrXV:226444-226906 ( 31) GGATTTTACCACTAAACCACT 1 chrX:396574-396961 ( 54) GGATTTTACCACTAAACCACT 1 chrV:61718-62161 ( 46) GGATTTTACCACTAAACCACT 1 chrIV:83345-83816 ( 23) GGATTTTACCACTAAACCACT 1 chrXVI:744077-744572 ( 15) ACGCTCTACCACTAAGCTAAG 1 chrVIII:466815-467168 ( 54) ACGCTCTACCACTAAGCTAAG 1 chrVII:661546-661942 ( 60) ACGCTCTACCACTAAGCTAAG 1 chrIV:1256764-1257293 ( 76) AATTCTAACCACTGAACCACT 1 chrIII:71-1054 ( 35) CCCATATCCAACTCCACTACC 1 chrVII:779395-779944 ( 2) GATGATAACCACTACACTAAC 1 chrXV:571734-572147 ( 73) CATTCTGACCATTAAACTATC 1 chrXIII:463336-463863 ( 10) CATTCTGACCATTAAACTATC 1 chrXI:382189-382501 ( 62) CGTTCCACCCATTCCTCCACG 1 chrX:374188-374821 ( 16) CATTCTGACCATTAAACTATC 1 chrX:204556-204957 ( 34) CATTCTGACCATTAAACTATC 1 chrVII:544408-544863 ( 38) CATTCTGACCATTAAACTATC 1 chrVII:531401-531829 ( 50) CATTCTGACCATTAAACTATC 1 chrIV:568691-569342 ( 3) CATTCTGACCATTAAACTATC 1 chrII:405684-406296 ( 25) CATTCTGACCATTAAACTATC 1 chrXIII:808035-808542 ( 54) AGTGATAACCACTACACTATA 1 chrV:130855-131379 ( 61) AGTGATAACCACTACACTATA 1 chrIV:802554-803002 ( 49) AGTGATAACCACTACACTATA 1 chrIV:520746-521181 ( 64) AGTGATAACCACTACACTATA 1 chrII:350610-351066 ( 44) AGTGATAACCACTACACTATA 1 chrXIV:6617-7001 ( 16) ACCCTGCCCCACTCAACCATA 1 chrIII:316216-316595 ( 64) ACCCTGCCCCACTCAACCATA 1 chrV:78090-79436 ( 6) GGTTCTACCGACGACACCATC 1 chrX:517645-518106 ( 34) GCGCGCTTCCACTGCGCCACG 1 chrIII:149728-150192 ( 15) GCGCGCTTCCACTGCGCCACG 1 chrVII:287146-287656 ( 79) AAGCTCTACCATTGAGCCACC 1 chrXI:2-187 ( 13) CACCACACCCACTACTCTAAC 1 chrXVI:775618-776033 ( 36) CTGCGCTACCACTGCGCCATA 1 chrII:642819-643254 ( 67) CTGCGCTACCACTGCGCCATA 1 chrXIII:131567-132123 ( 76) ACGCGTTGCCATTACGCCACG 1 chrVII:736179-736543 ( 34) ACGCGTTGCCATTACGCCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWAMCCACTVVRCYAHV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 40560 bayes= 8.40144 E= 3.2e-152 -81 125 88 -1307 -81 93 114 -371 -171 152 -75 -39 -271 52 -37 78 -139 74 -126 65 -1 -75 -307 87 81 -148 -16 -46 75 118 -307 -371 -1307 236 -1307 -1307 -19 163 -61 -1307 168 -1307 -307 -1307 -1307 202 -1307 -54 -1307 -1307 -407 170 38 2 45 -113 4 45 110 -1307 19 -1307 169 -371 -1307 236 -1307 -1307 -1307 176 -1307 15 171 -1307 -1307 -1307 24 69 -1307 10 10 69 52 -190 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWAMCCACTVVRCYAHV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 86 E= 3.2e-152 0.174419 0.465116 0.360465 0.000000 0.174419 0.372093 0.430233 0.023256 0.093023 0.558140 0.116279 0.232558 0.046512 0.279070 0.151163 0.523256 0.116279 0.325581 0.081395 0.476744 0.302326 0.116279 0.023256 0.558140 0.534884 0.069767 0.174419 0.220930 0.511628 0.441860 0.023256 0.023256 0.000000 1.000000 0.000000 0.000000 0.267442 0.604651 0.127907 0.000000 0.976744 0.000000 0.023256 0.000000 0.000000 0.790698 0.000000 0.209302 0.000000 0.000000 0.011628 0.988372 0.395349 0.197674 0.267442 0.139535 0.313953 0.267442 0.418605 0.000000 0.348837 0.000000 0.627907 0.023256 0.000000 1.000000 0.000000 0.000000 0.000000 0.662791 0.000000 0.337209 1.000000 0.000000 0.000000 0.000000 0.360465 0.313953 0.000000 0.325581 0.325581 0.313953 0.279070 0.081395 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWAMCCACTVVRCYAHV MEME-2 regular expression -------------------------------------------------------------------------------- [CG][GC][CT][TC][TC][TA][AT][AC]C[CA]A[CT]T[AG][GAC][GA]C[CT]A[ATC][ACG] -------------------------------------------------------------------------------- Time 551.95 secs. ******************************************************************************** ******************************************************************************** MOTIF GRTGTAYGGRTGT MEME-3 width = 13 sites = 59 llr = 681 E-value = 4.5e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTGTAYGGRTGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 25::17:::3::1 pos.-specific C ::::2:4:::::2 probability G 651a:2:aa7:91 matrix T 1:9:716:::916 bits 2.4 * 2.1 * ** 1.9 * ** 1.6 * ** * Relative 1.4 * ** ** Entropy 1.2 ** ***** (16.7 bits) 0.9 **** ****** 0.7 ************ 0.5 ************* 0.2 ************* 0.0 ------------- Multilevel GGTGTATGGGTGT consensus AA CGC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGTAYGGRTGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------- chrXV:639148-639508 + 39 5.52e-09 TTGTATGTGT GGTGTACGGGTGT AAAAGTAGTC chrIV:221938-222344 + 44 5.52e-09 ATGAGATAAG GGTGTACGGGTGT GGTAACCGTC chrVIII:382890-383358 + 27 4.33e-08 TTATTTTCAT GATGTATGGGTGT CTCGGATGTT chrXIII:5460-5663 - 64 5.79e-08 ATTGTGTTAG GGTGTGTGGGTGT GGTGTGTGGG chrXI:666612-666809 + 21 5.79e-08 GTGTGGTGTG GGTGTGTGGGTGT GGTGTGTGGG chrVIII:562342-562592 + 49 5.79e-08 GTGTGGGTGT GGTGTGTGGGTGT GGGTGTGTGT chrIV:6-240 - 45 5.79e-08 GTGTGGGTGT GGTGTGTGGGTGT GGGTGTGGTG chrXII:932086-932529 + 18 1.69e-07 CAGATGTACG GATGTACGGATGT ATACTATGTA chrIV:1359426-1359833 - 17 1.69e-07 ATGGGTGCGT GATGTACGGATGT TTAATGTCTT chrVIII:125900-126325 - 40 2.40e-07 TAAAGATGTA GGTGTACGGATGC ATTAACGTCT chrXI:431381-431678 - 15 3.43e-07 ATGTAAAAAT TGTGTATGGGTGT ATTTGCGCTG chrV:69111-69315 + 17 4.11e-07 GAAGCTTTGT GGGGTACGGGTGC ATGCTCGGCT chrIV:1355742-1355985 + 26 4.11e-07 AAATACTATA AATGTATGGGTGT AATTTTAACC chrVII:483354-483721 + 61 4.54e-07 AAAACAGAGT GATGTATGGGTGA TCCCAGCAAT chrXV:79728-80148 + 60 5.25e-07 ACTTATTTAA TATGTACGGGTGT TTACATGGAG chrXIV:783698-784323 + 77 5.25e-07 GTGTTAGGGT AGTGTGTGGGTGT GGTGTGTGTG chrIV:411255-411660 - 28 5.25e-07 TTGGGTGCCC GGGGTGTGGGTGT TTGATTTGTT chrIII:163468-163892 + 17 5.25e-07 GCCGCGGTTG GGTGCGTGGGTGC GGTAATTTAA chrXVI:794485-794834 - 46 6.71e-07 ATAATATAAA TATGTATGGGTGT TTGGAGATGT chrXVI:279981-280228 - 60 6.71e-07 GGAATTGTGA GGTGCACGGATGC GGACTTCTCC chrXII:1028201-1028583 - 56 6.71e-07 CATACATTTT GGTGCATGGGTGA TATTTTGTCT chrX:545407-545768 + 20 7.44e-07 GTGCGAGTGC GGTGCATGGGTGG CTGTCTTTTC chrXII:645865-646083 - 22 8.55e-07 TCGCCCGACG GGTGAATGGGTGT GGGTGGAACG chrVII:555065-555899 - 78 8.55e-07 AAACACTTTT AATGCACGGGTGT AAAAGGGATG chrII:181331-181670 - 45 9.63e-07 TATTCAATGT AATGTATGGGTGC TTTGTAAAGG chrXVI:378642-378999 + 70 1.17e-06 TGAGAACTCG AATGTACGGATGT TTTCTCTGAA chrXI:108743-109125 - 37 1.17e-06 GAGCCAACTA AATGTACGGATGT TGTAATGTGT chrVII:1000353-1000573 - 45 1.17e-06 CAAATATGCA GGTGTTTGGGTGC TATCCTAGTG chrIX:68168-68509 - 62 1.17e-06 ACATCTTAGT AATGTACGGATGT AATAAACTCA chrVII:726402-726779 - 64 1.30e-06 ATTTAAAAAT AGGGTATGGGTGT ATATAGGGTA chrXV:1025734-1026056 - 31 1.51e-06 AATTACACGT GATGAATGGGTGT TCAGCATATG chrV:53510-53944 + 58 1.51e-06 ACACATATTT GGTGTTCGGATGT TAAACAGGGT chrIV:1300869-1301337 - 56 1.64e-06 AAACATCCAC AGTGCACGGATGT TTGAAGGAAA chrXII:713146-713631 + 34 1.86e-06 TTTTTATACA TATGTACGGATGT GATAGTCTGC chrXII:241643-242019 - 26 1.86e-06 TTACATTTTA TATGTACGGATGT AAAAAGGGAA chrX:607881-608157 - 27 1.86e-06 GGTTAAATAG GATGTATGGATGG AGGGTTGGCA chrIV:307817-308422 + 72 1.86e-06 TATTTTTCAA CATGTATGGGTGT CTTTTCTGAA chrXV:901446-901643 + 46 1.99e-06 GGAAACGTAA AATGTACGGGTGA ACAGTCCCGA chrXVI:731906-732294 - 54 2.21e-06 AACCATCCTA AAGGTATGGGTGT ACTGACGATG chrIV:321636-321966 - 48 2.62e-06 AATAAAGATT GGTGTACGGAGGT AAAGGTATGA chrVII:277024-277415 - 58 2.90e-06 CCATAGAGCG GGTGTATGGGTCT AGCTTAAATA chrXV:216285-216698 - 10 3.18e-06 GGAAGGCGCG GGTGCTCGGATGT TCCGATAAA chrXV:968066-968463 + 55 4.56e-06 AAAAGCGTGG GGTGCGTGGGCGT GCGCTGCTCG chrII:165073-165433 - 54 4.56e-06 GCTCTAACGC GGTGTATGGGTTA GATTCGTAAT chrXII:796404-796855 + 55 4.97e-06 TATTATCCAG GAGGCACGGATGC AAAAGATAGA chrXI:67795-68046 - 43 4.97e-06 AATTTGATGC GGTGCACGGATTT CAGCACGGGT chrXI:382189-382501 - 10 5.83e-06 TGTTGGGTGT GATGTCCGGATGC AACAGCAGC chrXVI:699774-700696 - 75 7.42e-06 TTTAGTATGC TGTGCTTGGGTGT TTTGAAGTGG chrX:90015-90447 - 80 7.42e-06 AACAAGGC CATGTATGGGTGA GAATGTTCAG chrXIII:747326-748154 + 19 8.65e-06 AACTGGTGGG GCTGTGTGGATGC TGTTTTAAAT chrXV:253781-254138 + 69 9.31e-06 TTATACGCGC GGTGTACGGATTA AAAAAGTTTT chrXI:618748-619270 + 52 1.08e-05 AAATCTATTA GAGGCACGGATGG AAATAGTATT chrXV:168095-168389 - 15 1.34e-05 TTCTCAATGT GATGTGTGGGCGG CTTTGAATAC chrII:167785-168260 - 80 2.02e-05 TTTTCCAA GATGTACTGGTGA AAAATATGTC chrXV:978794-979164 + 9 2.30e-05 TACACAAG GATGAATGGGTTC TACGACACCG chrII:476833-477762 - 3 2.46e-05 ATAATTTGTT GCGGTCTGGGTGT AT chrVI:224330-225262 + 48 3.18e-05 TCTTTATCCG TGTGTGTAGGTGT AAGTGTATAT chrVI:210422-211434 - 5 3.38e-05 TGTATGTGTG AGTGTGCGTGTGC TAAA chrV:354706-355343 + 55 5.37e-05 TCATACAGTG TATGTATGGGGTT AGGAGCCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGTAYGGRTGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639148-639508 5.5e-09 38_[+3]_49 chrIV:221938-222344 5.5e-09 43_[+3]_44 chrVIII:382890-383358 4.3e-08 26_[+3]_61 chrXIII:5460-5663 5.8e-08 63_[-3]_24 chrXI:666612-666809 5.8e-08 20_[+3]_67 chrVIII:562342-562592 5.8e-08 48_[+3]_39 chrIV:6-240 5.8e-08 44_[-3]_43 chrXII:932086-932529 1.7e-07 17_[+3]_70 chrIV:1359426-1359833 1.7e-07 16_[-3]_71 chrVIII:125900-126325 2.4e-07 39_[-3]_48 chrXI:431381-431678 3.4e-07 14_[-3]_73 chrV:69111-69315 4.1e-07 16_[+3]_71 chrIV:1355742-1355985 4.1e-07 25_[+3]_62 chrVII:483354-483721 4.5e-07 60_[+3]_27 chrXV:79728-80148 5.3e-07 59_[+3]_28 chrXIV:783698-784323 5.3e-07 76_[+3]_11 chrIV:411255-411660 5.3e-07 27_[-3]_60 chrIII:163468-163892 5.3e-07 16_[+3]_71 chrXVI:794485-794834 6.7e-07 45_[-3]_42 chrXVI:279981-280228 6.7e-07 59_[-3]_28 chrXII:1028201-1028583 6.7e-07 55_[-3]_32 chrX:545407-545768 7.4e-07 19_[+3]_68 chrXII:645865-646083 8.5e-07 21_[-3]_66 chrVII:555065-555899 8.5e-07 77_[-3]_10 chrII:181331-181670 9.6e-07 44_[-3]_43 chrXVI:378642-378999 1.2e-06 69_[+3]_18 chrXI:108743-109125 1.2e-06 36_[-3]_51 chrVII:1000353-1000573 1.2e-06 44_[-3]_43 chrIX:68168-68509 1.2e-06 61_[-3]_26 chrVII:726402-726779 1.3e-06 63_[-3]_24 chrXV:1025734-1026056 1.5e-06 30_[-3]_57 chrV:53510-53944 1.5e-06 57_[+3]_30 chrIV:1300869-1301337 1.6e-06 55_[-3]_32 chrXII:713146-713631 1.9e-06 33_[+3]_54 chrXII:241643-242019 1.9e-06 25_[-3]_62 chrX:607881-608157 1.9e-06 26_[-3]_61 chrIV:307817-308422 1.9e-06 71_[+3]_16 chrXV:901446-901643 2e-06 45_[+3]_42 chrXVI:731906-732294 2.2e-06 53_[-3]_34 chrIV:321636-321966 2.6e-06 47_[-3]_40 chrVII:277024-277415 2.9e-06 57_[-3]_30 chrXV:216285-216698 3.2e-06 9_[-3]_78 chrXV:968066-968463 4.6e-06 54_[+3]_33 chrII:165073-165433 4.6e-06 53_[-3]_34 chrXII:796404-796855 5e-06 54_[+3]_33 chrXI:67795-68046 5e-06 42_[-3]_45 chrXI:382189-382501 5.8e-06 9_[-3]_78 chrXVI:699774-700696 7.4e-06 74_[-3]_13 chrX:90015-90447 7.4e-06 79_[-3]_8 chrXIII:747326-748154 8.6e-06 18_[+3]_69 chrXV:253781-254138 9.3e-06 68_[+3]_19 chrXI:618748-619270 1.1e-05 51_[+3]_36 chrXV:168095-168389 1.3e-05 14_[-3]_73 chrII:167785-168260 2e-05 79_[-3]_8 chrXV:978794-979164 2.3e-05 8_[+3]_79 chrII:476833-477762 2.5e-05 2_[-3]_85 chrVI:224330-225262 3.2e-05 47_[+3]_40 chrVI:210422-211434 3.4e-05 4_[-3]_83 chrV:354706-355343 5.4e-05 54_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGTAYGGRTGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTGTAYGGRTGT width=13 seqs=59 chrXV:639148-639508 ( 39) GGTGTACGGGTGT 1 chrIV:221938-222344 ( 44) GGTGTACGGGTGT 1 chrVIII:382890-383358 ( 27) GATGTATGGGTGT 1 chrXIII:5460-5663 ( 64) GGTGTGTGGGTGT 1 chrXI:666612-666809 ( 21) GGTGTGTGGGTGT 1 chrVIII:562342-562592 ( 49) GGTGTGTGGGTGT 1 chrIV:6-240 ( 45) GGTGTGTGGGTGT 1 chrXII:932086-932529 ( 18) GATGTACGGATGT 1 chrIV:1359426-1359833 ( 17) GATGTACGGATGT 1 chrVIII:125900-126325 ( 40) GGTGTACGGATGC 1 chrXI:431381-431678 ( 15) TGTGTATGGGTGT 1 chrV:69111-69315 ( 17) GGGGTACGGGTGC 1 chrIV:1355742-1355985 ( 26) AATGTATGGGTGT 1 chrVII:483354-483721 ( 61) GATGTATGGGTGA 1 chrXV:79728-80148 ( 60) TATGTACGGGTGT 1 chrXIV:783698-784323 ( 77) AGTGTGTGGGTGT 1 chrIV:411255-411660 ( 28) GGGGTGTGGGTGT 1 chrIII:163468-163892 ( 17) GGTGCGTGGGTGC 1 chrXVI:794485-794834 ( 46) TATGTATGGGTGT 1 chrXVI:279981-280228 ( 60) GGTGCACGGATGC 1 chrXII:1028201-1028583 ( 56) GGTGCATGGGTGA 1 chrX:545407-545768 ( 20) GGTGCATGGGTGG 1 chrXII:645865-646083 ( 22) GGTGAATGGGTGT 1 chrVII:555065-555899 ( 78) AATGCACGGGTGT 1 chrII:181331-181670 ( 45) AATGTATGGGTGC 1 chrXVI:378642-378999 ( 70) AATGTACGGATGT 1 chrXI:108743-109125 ( 37) AATGTACGGATGT 1 chrVII:1000353-1000573 ( 45) GGTGTTTGGGTGC 1 chrIX:68168-68509 ( 62) AATGTACGGATGT 1 chrVII:726402-726779 ( 64) AGGGTATGGGTGT 1 chrXV:1025734-1026056 ( 31) GATGAATGGGTGT 1 chrV:53510-53944 ( 58) GGTGTTCGGATGT 1 chrIV:1300869-1301337 ( 56) AGTGCACGGATGT 1 chrXII:713146-713631 ( 34) TATGTACGGATGT 1 chrXII:241643-242019 ( 26) TATGTACGGATGT 1 chrX:607881-608157 ( 27) GATGTATGGATGG 1 chrIV:307817-308422 ( 72) CATGTATGGGTGT 1 chrXV:901446-901643 ( 46) AATGTACGGGTGA 1 chrXVI:731906-732294 ( 54) AAGGTATGGGTGT 1 chrIV:321636-321966 ( 48) GGTGTACGGAGGT 1 chrVII:277024-277415 ( 58) GGTGTATGGGTCT 1 chrXV:216285-216698 ( 10) GGTGCTCGGATGT 1 chrXV:968066-968463 ( 55) GGTGCGTGGGCGT 1 chrII:165073-165433 ( 54) GGTGTATGGGTTA 1 chrXII:796404-796855 ( 55) GAGGCACGGATGC 1 chrXI:67795-68046 ( 43) GGTGCACGGATTT 1 chrXI:382189-382501 ( 10) GATGTCCGGATGC 1 chrXVI:699774-700696 ( 75) TGTGCTTGGGTGT 1 chrX:90015-90447 ( 80) CATGTATGGGTGA 1 chrXIII:747326-748154 ( 19) GCTGTGTGGATGC 1 chrXV:253781-254138 ( 69) GGTGTACGGATTA 1 chrXI:618748-619270 ( 52) GAGGCACGGATGG 1 chrXV:168095-168389 ( 15) GATGTGTGGGCGG 1 chrII:167785-168260 ( 80) GATGTACTGGTGA 1 chrXV:978794-979164 ( 9) GATGAATGGGTTC 1 chrII:476833-477762 ( 3) GCGGTCTGGGTGT 1 chrVI:224330-225262 ( 48) TGTGTGTAGGTGT 1 chrVI:210422-211434 ( 5) AGTGTGCGTGTGC 1 chrV:354706-355343 ( 55) TATGTATGGGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGTAYGGRTGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 13 n= 44616 bayes= 10.2191 E= 4.5e-052 -58 -252 168 -117 59 -252 138 -1253 -1253 -1253 -72 153 -1253 -1253 236 -1253 -258 6 -1253 129 119 -252 6 -217 -1253 117 -1253 88 -416 -1253 231 -416 -1253 -1253 233 -416 15 -1253 176 -1253 -1253 -252 -252 161 -1253 -352 220 -185 -136 -7 -153 104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGTAYGGRTGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 13 nsites= 59 E= 4.5e-052 0.203390 0.033898 0.627119 0.135593 0.457627 0.033898 0.508475 0.000000 0.000000 0.000000 0.118644 0.881356 0.000000 0.000000 1.000000 0.000000 0.050847 0.203390 0.000000 0.745763 0.694915 0.033898 0.203390 0.067797 0.000000 0.440678 0.000000 0.559322 0.016949 0.000000 0.966102 0.016949 0.000000 0.000000 0.983051 0.016949 0.338983 0.000000 0.661017 0.000000 0.000000 0.033898 0.033898 0.932203 0.000000 0.016949 0.898305 0.084746 0.118644 0.186441 0.067797 0.627119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGTAYGGRTGT MEME-3 regular expression -------------------------------------------------------------------------------- [GA][GA]TG[TC][AG][TC]GG[GA]TGT -------------------------------------------------------------------------------- Time 873.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71810-73254 3.54e-01 100 chrI:81313-82311 4.44e-01 100 chrI:138950-139360 4.25e-04 51_[-2(6.72e-07)]_28 chrI:142200-143200 4.68e-01 100 chrI:166166-166592 9.74e-01 100 chrI:181122-181491 7.24e-01 100 chrI:182190-183220 3.28e-01 100 chrII:9452-9841 9.84e-04 45_[-1(1.72e-07)]_34 chrII:36229-36574 5.62e-04 51_[-2(1.17e-07)]_28 chrII:44796-45374 7.95e-01 100 chrII:45669-46369 3.59e-01 100 chrII:60791-62252 8.05e-01 100 chrII:89665-90161 1.26e-01 100 chrII:165073-165433 6.96e-04 53_[-3(4.56e-06)]_34 chrII:167785-168260 4.04e-02 62_[-3(4.52e-05)]_4_[-3(2.02e-05)]_\ 8 chrII:168784-169606 3.99e-01 100 chrII:181331-181670 3.74e-03 44_[-3(9.63e-07)]_43 chrII:197254-197853 4.62e-07 34_[+1(1.87e-10)]_45 chrII:226966-227342 5.74e-04 22_[+1(1.59e-07)]_57 chrII:266194-266665 5.14e-09 3_[-2(9.58e-09)]_17_[+1(8.09e-08)]_\ 38 chrII:326461-327074 9.08e-04 78_[+1(1.24e-07)]_1 chrII:332290-332909 4.39e-01 100 chrII:347399-347920 7.87e-04 52_[-1(1.72e-07)]_27 chrII:350610-351066 2.00e-03 43_[-2(2.75e-06)]_36 chrII:405684-406296 6.08e-08 24_[-2(2.55e-06)]_16_[+1(7.87e-09)]_\ 18 chrII:415497-416850 9.93e-01 100 chrII:476833-477762 1.61e-02 2_[-3(2.46e-05)]_85 chrII:555727-558172 7.52e-01 100 chrII:592262-593543 2.76e-01 100 chrII:603699-606140 7.42e-01 100 chrII:642819-643254 1.73e-05 29_[-1(1.40e-06)]_16_[+2(5.04e-06)]_\ 13 chrII:644773-645439 3.82e-01 100 chrIII:71-1054 2.36e-03 34_[+2(1.61e-06)]_45 chrIII:30203-31152 7.03e-01 100 chrIII:57355-60584 1.56e-01 100 chrIII:82374-82662 3.19e-07 2_[-1(1.30e-10)]_77 chrIII:90850-91124 1.44e-01 100 chrIII:123349-123819 1.50e-08 51_[-1(3.15e-12)]_28 chrIII:127500-127904 1.93e-04 68_[-2(1.87e-08)]_11 chrIII:142616-142978 7.00e-01 100 chrIII:149728-150192 7.16e-04 14_[-2(3.63e-06)]_65 chrIII:150991-151516 6.96e-01 100 chrIII:163468-163892 8.70e-04 16_[+3(5.25e-07)]_71 chrIII:168070-168554 1.15e-05 47_[-1(1.48e-09)]_32 chrIII:177195-178756 9.98e-01 100 chrIII:227754-228254 1.24e-03 58_[+1(1.05e-06)]_21 chrIII:294965-295983 1.05e-04 64_[-2(9.58e-09)]_15 chrIII:316216-316595 1.12e-02 63_[-2(3.17e-06)]_16 chrIV:6-240 2.64e-04 21_[-3(3.81e-06)]_10_[-3(5.79e-08)]_\ 6_[-3(5.79e-08)]_24 chrIV:83345-83816 4.03e-10 22_[-2(8.87e-07)]_15_[+1(4.83e-11)]_\ 21 chrIV:117160-117810 3.38e-02 100 chrIV:130151-130979 9.09e-01 100 chrIV:217203-218032 8.69e-01 100 chrIV:221938-222344 1.90e-05 43_[+3(5.52e-09)]_44 chrIV:229542-230744 9.97e-01 100 chrIV:307817-308422 1.28e-02 71_[+3(1.86e-06)]_16 chrIV:321636-321966 1.45e-02 47_[-3(2.62e-06)]_13_[-3(2.02e-05)]_\ 14 chrIV:322228-323550 3.41e-01 100 chrIV:331130-331912 1.58e-01 100 chrIV:332066-332575 9.79e-01 100 chrIV:340593-342501 6.96e-01 100 chrIV:355638-357540 7.19e-01 100 chrIV:357800-358490 4.59e-01 100 chrIV:359376-359775 4.78e-05 56_[-2(6.72e-09)]_23 chrIV:409632-410794 2.83e-01 100 chrIV:411255-411660 1.26e-04 27_[-3(5.25e-07)]_60 chrIV:434023-434877 9.72e-01 100 chrIV:437552-438090 7.14e-11 5_[-2(6.02e-11)]_26_[+1(1.59e-07)]_\ 27 chrIV:465217-465545 5.89e-01 100 chrIV:488375-489154 7.16e-01 100 chrIV:490386-491292 8.41e-01 100 chrIV:519649-519913 1.36e-09 16_[-2(1.38e-09)]_33_[-1(1.72e-07)]_\ 9 chrIV:520746-521181 2.11e-03 63_[-2(2.75e-06)]_16 chrIV:538986-539435 2.28e-02 100 chrIV:568691-569342 6.08e-08 2_[-2(2.55e-06)]_16_[+1(7.87e-09)]_\ 40 chrIV:578885-580700 6.94e-01 100 chrIV:600878-602255 2.54e-01 100 chrIV:619701-620201 7.71e-05 76_[-1(5.14e-08)]_3 chrIV:644746-645366 4.11e-01 100 chrIV:667728-668261 4.62e-07 71_[-1(1.87e-10)]_8 chrIV:802554-803002 1.17e-08 11_[-1(1.48e-09)]_16_[+2(2.75e-06)]_\ 31 chrIV:835770-837924 1.91e-01 100 chrIV:884256-884579 1.15e-01 1_[+1(6.11e-05)]_78 chrIV:946133-946620 6.87e-04 44_[+1(2.94e-07)]_35 chrIV:980714-981161 9.85e-01 100 chrIV:992721-993313 1.70e-01 100 chrIV:1013525-1013977 7.35e-01 100 chrIV:1016984-1017472 2.91e-07 37_[-1(1.30e-10)]_42 chrIV:1075102-1075758 3.02e-01 100 chrIV:1094931-1095657 7.00e-01 100 chrIV:1150720-1151156 3.12e-05 27_[+2(1.71e-09)]_52 chrIV:1175741-1176110 1.25e-02 1_[-1(2.96e-06)]_78 chrIV:1201514-1202038 2.60e-10 28_[-2(6.10e-08)]_17_[+1(7.12e-10)]_\ 13 chrIV:1236567-1238011 5.03e-01 100 chrIV:1256764-1257293 9.86e-13 38_[-1(4.25e-12)]_16_[+2(1.49e-06)]_\ 4 chrIV:1300369-1300654 7.48e-02 100 chrIV:1300869-1301337 5.39e-03 55_[-3(1.64e-06)]_3_[+3(3.38e-05)]_\ 16 chrIV:1305407-1305789 4.80e-01 100 chrIV:1352038-1353062 5.18e-04 12_[+2(6.10e-08)]_67 chrIV:1355742-1355985 1.98e-03 25_[+3(4.11e-07)]_11_[+3(1.51e-06)]_\ 38 chrIV:1359426-1359833 8.03e-04 16_[-3(1.69e-07)]_2_[-3(6.83e-06)]_\ 56 chrIV:1401162-1402534 6.82e-01 100 chrIV:1450731-1451221 6.05e-02 85_[+3(5.98e-05)]_2 chrIV:1461464-1461849 4.65e-01 100 chrIV:1489380-1489789 8.31e-01 100 chrIX:68168-68509 2.01e-03 61_[-3(1.17e-06)]_26 chrIX:99644-100214 8.06e-01 100 chrIX:174868-175704 9.20e-01 100 chrIX:183295-183719 2.58e-05 30_[+2(2.11e-09)]_49 chrIX:197352-198579 7.83e-01 100 chrIX:210654-210892 7.77e-01 100 chrIX:247903-249009 9.24e-01 100 chrIX:253847-254561 2.91e-01 100 chrIX:257364-257920 8.86e-01 100 chrIX:299981-300480 2.47e-06 56_[-1(7.12e-10)]_23 chrIX:315940-316595 9.56e-01 100 chrIX:323067-324395 1.16e-01 100 chrIX:325736-326176 6.47e-01 100 chrIX:336096-336631 5.39e-05 44_[-1(7.87e-09)]_35 chrIX:370217-371306 3.97e-01 100 chrIX:391092-392506 2.77e-01 100 chrV:53510-53944 4.24e-03 41_[-3(1.51e-06)]_3_[+3(1.51e-06)]_\ 30 chrV:61718-62161 4.03e-10 9_[-1(4.83e-11)]_15_[+2(8.87e-07)]_\ 34 chrV:67205-68950 7.92e-01 100 chrV:69111-69315 8.93e-05 16_[+3(4.11e-07)]_71 chrV:78090-79436 7.05e-04 5_[-2(3.39e-06)]_74 chrV:85097-86244 1.95e-01 100 chrV:86402-86960 5.74e-04 24_[+1(1.59e-07)]_55 chrV:99812-100323 8.08e-01 100 chrV:117349-118309 1.63e-01 100 chrV:130855-131379 1.10e-08 23_[-1(1.48e-09)]_16_[+2(2.75e-06)]_\ 19 chrV:135207-136043 3.27e-01 100 chrV:138462-139959 8.51e-01 100 chrV:140225-140927 7.97e-02 100 chrV:141101-141314 4.28e-01 100 chrV:176912-177452 1.47e-06 8_[+1(1.30e-10)]_71 chrV:235719-236987 3.78e-02 100 chrV:249768-250522 8.39e-02 100 chrV:270071-270655 3.64e-01 100 chrV:288059-288765 5.15e-01 100 chrV:305810-307434 9.38e-02 100 chrV:311694-312273 8.02e-01 100 chrV:354706-355343 3.37e-08 1_[+1(1.30e-10)]_32_[+3(5.37e-05)]_\ 33 chrV:362182-363272 7.33e-01 100 chrV:395857-396597 9.60e-01 100 chrV:407343-409570 5.01e-01 100 chrV:422827-424290 7.36e-01 100 chrV:424598-425038 3.55e-01 100 chrV:425203-425533 3.45e-01 100 chrV:431026-431908 5.26e-01 100 chrV:434396-434978 6.25e-01 100 chrV:435602-436013 2.60e-10 3_[-1(7.12e-10)]_17_[+2(6.10e-08)]_\ 38 chrV:438532-438962 1.92e-08 7_[-2(2.98e-07)]_18_[+1(8.85e-09)]_\ 33 chrV:441791-442684 9.01e-01 100 chrV:443009-443364 1.54e-07 74_[-1(1.87e-10)]_5 chrV:469105-469709 4.55e-01 100 chrV:470172-470421 3.10e-01 100 chrV:487095-487595 1.47e-06 44_[-1(1.30e-10)]_35 chrV:491680-492569 9.30e-01 100 chrV:551015-551558 4.62e-07 57_[-1(1.87e-10)]_22 chrVI:64250-65380 8.85e-01 100 chrVI:95459-95917 1.34e-01 100 chrVI:101014-102364 8.97e-01 100 chrVI:136800-137703 8.87e-01 100 chrVI:157841-158226 9.69e-01 100 chrVI:161996-162395 6.17e-01 100 chrVI:167208-167698 4.42e-03 38_[-2(6.11e-07)]_41 chrVI:180661-181263 9.93e-07 70_[-1(4.83e-11)]_9 chrVI:190949-191767 9.14e-01 100 chrVI:210422-211434 3.32e-02 4_[-3(3.38e-05)]_83 chrVI:220483-222171 6.66e-01 100 chrVI:223238-224154 8.91e-02 100 chrVI:224330-225262 4.91e-02 47_[+3(3.18e-05)]_40 chrVI:226415-227260 2.36e-01 100 chrVII:110145-110788 2.16e-01 100 chrVII:115326-115714 3.35e-05 22_[-2(6.72e-09)]_57 chrVII:121968-122469 8.60e-01 100 chrVII:122654-122808 5.32e-01 100 chrVII:148210-149506 8.51e-01 100 chrVII:185378-185941 2.84e-01 100 chrVII:205320-205773 9.98e-04 29_[-2(2.98e-07)]_50 chrVII:254105-254708 7.21e-01 100 chrVII:277024-277415 7.68e-03 57_[-3(2.90e-06)]_30 chrVII:287146-287656 2.31e-07 7_[-1(1.91e-08)]_50_[+2(3.89e-06)]_\ 1 chrVII:310436-312644 1.85e-01 100 chrVII:319229-320163 8.78e-01 100 chrVII:328395-329179 6.48e-01 100 chrVII:364894-366565 9.38e-01 100 chrVII:370509-371587 8.02e-01 100 chrVII:401415-401620 4.66e-07 68_[-1(1.30e-10)]_11 chrVII:405459-405843 8.23e-01 100 chrVII:411749-412576 3.66e-01 100 chrVII:422877-423500 2.95e-01 100 chrVII:437490-439869 9.78e-01 100 chrVII:440474-444187 1.31e-01 100 chrVII:479551-482703 1.96e-01 100 chrVII:483354-483721 7.08e-04 60_[+3(4.54e-07)]_27 chrVII:531401-531829 6.87e-05 20_[-1(2.03e-05)]_8_[-2(2.55e-06)]_\ 30 chrVII:533819-535198 8.91e-01 100 chrVII:541712-542164 1.08e-06 3_[+1(1.30e-10)]_76 chrVII:544408-544863 6.08e-08 [-1(7.87e-09)]_16_[+2(2.55e-06)]_42 chrVII:555065-555899 2.42e-03 77_[-3(8.55e-07)]_10 chrVII:561434-561730 9.15e-01 100 chrVII:576223-577336 5.43e-01 100 chrVII:648755-649366 4.41e-01 100 chrVII:661546-661942 3.30e-03 59_[-2(1.37e-06)]_20 chrVII:700457-701228 9.41e-01 100 chrVII:706726-707192 9.85e-01 100 chrVII:726402-726779 5.76e-03 46_[-3(1.30e-06)]_4_[-3(1.30e-06)]_\ 24 chrVII:730965-731405 4.62e-08 6_[-2(1.87e-08)]_18_[+1(5.18e-07)]_\ 34 chrVII:736179-736543 1.49e-06 33_[-2(9.03e-06)]_16_[+1(3.87e-08)]_\ 9 chrVII:738828-739583 4.62e-07 10_[+1(1.87e-10)]_69 chrVII:774130-774741 1.04e-05 6_[+1(8.28e-10)]_73 chrVII:779395-779944 3.04e-09 1_[-2(2.20e-06)]_16_[+1(8.28e-10)]_\ 41 chrVII:788003-788767 2.47e-01 100 chrVII:794202-794558 5.70e-01 100 chrVII:823339-823722 1.94e-08 6_[-2(2.98e-07)]_18_[+1(8.85e-09)]_\ 34 chrVII:828397-828987 9.18e-01 100 chrVII:845457-846307 4.16e-02 100 chrVII:856731-857718 4.45e-01 100 chrVII:876170-878123 2.24e-01 100 chrVII:878373-879028 1.49e-04 68_[-1(1.91e-08)]_11 chrVII:882798-883817 4.03e-02 71_[+2(2.79e-05)]_8 chrVII:930745-931626 9.66e-01 100 chrVII:1000353-1000573 2.11e-03 44_[-3(1.17e-06)]_43 chrVII:1003946-1004432 9.53e-01 100 chrVIII:34429-35074 4.59e-01 100 chrVIII:35289-36113 2.14e-01 100 chrVIII:62559-63114 4.81e-03 10_[+1(1.05e-06)]_69 chrVIII:74758-75900 9.49e-01 100 chrVIII:84937-85373 6.71e-01 100 chrVIII:103695-104713 8.63e-01 100 chrVIII:115834-116398 4.71e-04 49_[-1(8.09e-08)]_30 chrVIII:125900-126325 4.36e-04 39_[-3(2.40e-07)]_48 chrVIII:132797-133114 9.81e-01 100 chrVIII:134131-134794 8.02e-01 100 chrVIII:145868-146456 7.60e-01 100 chrVIII:148939-149571 5.10e-01 100 chrVIII:174811-175401 9.47e-02 45_[+3(6.32e-05)]_42 chrVIII:237587-238138 1.55e-03 44_[-1(6.76e-07)]_35 chrVIII:296777-297236 9.91e-02 78_[+3(8.66e-05)]_9 chrVIII:358289-358787 4.31e-04 55_[+2(1.17e-07)]_24 chrVIII:382890-383358 1.85e-04 26_[+3(4.33e-08)]_4_[+3(2.40e-06)]_\ 44 chrVIII:384490-385984 9.92e-01 100 chrVIII:388657-389008 6.85e-01 100 chrVIII:451313-453043 3.46e-01 100 chrVIII:466815-467168 5.06e-03 53_[-2(1.37e-06)]_26 chrVIII:475557-475911 2.40e-07 30_[-1(1.29e-09)]_17_[+2(4.11e-05)]_\ 11 chrVIII:505822-506403 1.20e-01 100 chrVIII:555122-555480 3.59e-01 100 chrVIII:555764-556924 1.01e-01 100 chrVIII:562342-562592 3.09e-04 48_[+3(5.79e-08)]_5_[+3(8.55e-07)]_\ [+3(5.79e-08)]_8 chrX:58969-59408 7.70e-05 8_[+2(9.58e-09)]_71 chrX:72849-73178 8.30e-01 100 chrX:73379-74584 9.41e-01 100 chrX:74892-75728 4.53e-01 100 chrX:90015-90447 1.42e-02 79_[-3(7.42e-06)]_8 chrX:107658-108221 5.61e-02 100 chrX:115804-116258 4.31e-01 100 chrX:120469-121886 2.61e-01 100 chrX:139430-140283 9.88e-01 100 chrX:156557-157177 7.84e-01 100 chrX:157445-157873 3.20e-01 100 chrX:197185-197449 1.05e-05 54_[-1(8.28e-10)]_25 chrX:204556-204957 1.02e-08 33_[-2(2.55e-06)]_16_[+1(7.87e-09)]_\ 9 chrX:233415-234139 7.59e-01 100 chrX:348917-349900 2.32e-01 100 chrX:354008-354451 3.92e-03 69_[-2(6.11e-07)]_10 chrX:355189-355880 8.14e-05 13_[+1(7.87e-09)]_66 chrX:374188-374821 2.60e-07 15_[+2(2.55e-06)]_24_[-1(3.87e-08)]_\ 19 chrX:378029-378804 9.87e-05 37_[+1(8.85e-09)]_42 chrX:390596-391338 9.94e-01 100 chrX:396574-396961 4.03e-10 17_[-1(4.83e-11)]_15_[+2(8.87e-07)]_\ 26 chrX:414769-415218 2.60e-10 27_[-2(6.10e-08)]_17_[+1(7.12e-10)]_\ 14 chrX:415714-416229 1.16e-04 18_[-1(1.91e-08)]_61 chrX:422710-423385 4.00e-02 25_[-1(5.91e-05)]_54 chrX:424256-424722 1.03e-08 1_[-1(1.40e-06)]_28_[+2(1.38e-09)]_\ 29 chrX:517645-518106 6.50e-03 33_[+2(3.63e-06)]_46 chrX:523147-524411 2.91e-01 100 chrX:531587-532473 8.99e-01 100 chrX:537997-538847 2.82e-01 100 chrX:540973-542442 5.20e-01 100 chrX:542766-543275 2.07e-03 48_[+2(6.11e-07)]_31 chrX:545407-545768 9.65e-04 19_[+3(7.44e-07)]_68 chrX:607881-608157 8.72e-03 26_[-3(1.86e-06)]_5_[-3(2.62e-05)]_\ 43 chrX:617713-618170 6.39e-07 32_[-2(8.77e-10)]_47 chrX:651047-651631 7.37e-01 100 chrX:702928-703778 7.03e-01 100 chrX:745061-745749 5.17e-02 100 chrXI:2-187 8.32e-07 3_[-3(5.79e-08)]_84 chrXI:766-1075 5.68e-01 100 chrXI:46714-47030 7.15e-01 100 chrXI:67795-68046 6.55e-03 42_[-3(4.97e-06)]_45 chrXI:74400-74822 1.19e-04 67_[-2(1.87e-08)]_12 chrXI:84010-84458 4.43e-09 28_[-2(1.38e-09)]_28_[+1(1.40e-06)]_\ 2 chrXI:99752-100012 8.25e-02 100 chrXI:108743-109125 4.23e-03 18_[-3(2.80e-05)]_5_[-3(1.17e-06)]_\ 51 chrXI:140787-141298 3.19e-07 34_[-1(1.30e-10)]_45 chrXI:158177-159311 9.13e-01 100 chrXI:162137-162772 7.49e-01 100 chrXI:202461-203300 3.28e-01 100 chrXI:219649-220124 3.11e-05 63_[-2(5.60e-09)]_16 chrXI:302694-303357 1.44e-04 18_[+1(1.91e-08)]_61 chrXI:307920-308444 1.94e-08 20_[-1(8.85e-09)]_18_[+2(2.98e-07)]_\ 20 chrXI:313233-314007 9.72e-01 100 chrXI:382189-382501 3.85e-05 9_[-3(5.83e-06)]_39_[+2(2.55e-06)]_\ 18 chrXI:431381-431678 2.24e-03 14_[-3(3.43e-07)]_73 chrXI:458013-458949 8.50e-01 100 chrXI:490703-491398 4.74e-04 10_[+1(5.14e-08)]_69 chrXI:512763-513613 2.77e-01 100 chrXI:517789-518069 9.56e-01 100 chrXI:518867-519179 8.43e-02 55_[+3(6.32e-05)]_32 chrXI:578766-579358 2.40e-05 18_[+1(1.11e-08)]_61 chrXI:618748-619270 2.61e-04 51_[+3(1.08e-05)]_36 chrXI:666612-666809 1.68e-04 20_[+3(5.79e-08)]_[+3(5.79e-08)]_2_\ 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chrXII:645865-646083 1.25e-04 21_[-3(8.55e-07)]_66 chrXII:656854-657214 5.94e-01 100 chrXII:673528-674917 4.76e-01 100 chrXII:710341-710898 2.62e-01 100 chrXII:713146-713631 9.07e-03 33_[+3(1.86e-06)]_54 chrXII:730922-732316 9.23e-01 100 chrXII:734595-734980 1.69e-05 69_[-2(2.11e-09)]_10 chrXII:781110-781881 6.17e-01 100 chrXII:783878-784524 5.67e-01 100 chrXII:793777-794210 7.85e-05 16_[+1(7.87e-09)]_63 chrXII:796404-796855 3.74e-03 54_[+3(4.97e-06)]_33 chrXII:818502-820295 4.44e-01 100 chrXII:838058-839366 2.21e-01 100 chrXII:874901-875614 2.42e-01 100 chrXII:897257-898774 9.63e-01 100 chrXII:921702-923697 3.94e-01 100 chrXII:932086-932529 6.07e-04 9_[+3(1.69e-07)]_20_[+3(2.62e-06)]_\ 45 chrXII:962836-963277 6.25e-07 23_[+2(1.38e-09)]_56 chrXII:975752-976198 3.35e-03 66_[-1(5.18e-07)]_13 chrXII:1011696-1011959 3.88e-01 100 chrXII:1012169-1013332 2.28e-01 100 chrXII:1018953-1019631 3.46e-01 100 chrXII:1028201-1028583 2.94e-03 55_[-3(6.71e-07)]_2_[+3(4.01e-05)]_\ 17 chrXII:1029126-1029718 9.22e-01 100 chrXII:1051932-1052233 4.62e-07 47_[-1(1.87e-10)]_32 chrXIII:5460-5663 6.43e-04 31_[-3(5.79e-08)]_6_[-3(5.79e-08)]_\ [-3(5.79e-08)]_24 chrXIII:91372-92110 7.66e-03 63_[-1(6.32e-05)]_16 chrXIII:131567-132123 1.26e-06 38_[-1(3.87e-08)]_16_[+2(9.03e-06)]_\ 4 chrXIII:145752-146267 5.21e-01 100 chrXIII:162988-164262 7.89e-01 100 chrXIII:168237-169034 9.85e-01 100 chrXIII:195942-196308 8.83e-09 1_[-1(9.94e-09)]_47_[+2(6.72e-07)]_\ 10 chrXIII:225029-226560 9.69e-01 100 chrXIII:253339-253636 1.95e-01 100 chrXIII:258980-259391 7.14e-11 31_[-1(1.59e-07)]_26_[+2(6.02e-11)]_\ 1 chrXIII:288068-289684 2.42e-01 100 chrXIII:290569-291146 1.26e-06 35_[+1(1.30e-10)]_44 chrXIII:296715-298844 4.17e-01 100 chrXIII:302868-303703 2.27e-01 100 chrXIII:320982-321327 3.77e-06 51_[-1(8.28e-10)]_28 chrXIII:352077-353195 1.32e-01 100 chrXIII:362928-364006 5.74e-01 100 chrXIII:372181-372666 3.15e-01 100 chrXIII:379068-379627 1.09e-04 14_[-1(1.91e-08)]_65 chrXIII:420332-420868 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chrXIV:302704-303685 3.76e-01 100 chrXIV:330791-331598 7.00e-02 43_[+1(4.84e-05)]_36 chrXIV:374645-375135 2.71e-04 33_[-2(7.98e-08)]_46 chrXIV:413679-414910 9.46e-01 100 chrXIV:442755-443247 1.53e-03 59_[-2(2.98e-07)]_20 chrXIV:444263-444811 5.53e-02 100 chrXIV:495189-495810 9.27e-01 100 chrXIV:499290-500903 8.10e-01 100 chrXIV:501476-502752 5.81e-01 100 chrXIV:518047-519146 7.24e-03 100 chrXIV:525068-525300 9.01e-01 100 chrXIV:546563-547651 4.25e-04 41_[-2(6.72e-07)]_38 chrXIV:560331-560923 4.58e-01 100 chrXIV:568051-568596 7.11e-01 100 chrXIV:569683-570093 4.49e-12 37_[-1(1.87e-10)]_18_[+2(2.11e-09)]_\ 3 chrXIV:602077-602560 2.64e-05 48_[-2(2.11e-09)]_31 chrXIV:631726-632131 1.62e-02 13_[+2(8.63e-05)]_66 chrXIV:632416-632924 1.75e-03 22_[+1(5.18e-07)]_57 chrXIV:657475-658943 4.99e-01 100 chrXIV:725911-726387 9.84e-04 38_[+1(1.72e-07)]_41 chrXIV:783698-784323 1.04e-03 76_[+3(5.25e-07)]_11 chrXV:28758-30882 4.10e-01 100 chrXV:79728-80148 2.17e-03 37_[+3(6.32e-05)]_9_[+3(5.25e-07)]_\ 28 chrXV:92822-93821 3.30e-01 100 chrXV:94074-94803 3.48e-01 100 chrXV:109568-110024 3.35e-01 100 chrXV:110275-110641 1.91e-02 100 chrXV:110864-111592 9.81e-01 100 chrXV:113599-113883 5.88e-01 100 chrXV:159147-160123 3.98e-02 100 chrXV:161103-161705 2.44e-01 100 chrXV:168095-168389 3.51e-02 14_[-3(1.34e-05)]_73 chrXV:216285-216698 4.70e-03 9_[-3(3.18e-06)]_11_[-3(4.81e-05)]_\ 54 chrXV:226444-226906 2.53e-03 30_[+2(8.87e-07)]_49 chrXV:228115-228536 1.21e-04 60_[-2(1.87e-08)]_19 chrXV:253781-254138 3.11e-02 37_[-3(4.81e-05)]_18_[+3(9.31e-06)]_\ 19 chrXV:274451-275025 9.69e-04 55_[+1(8.72e-07)]_24 chrXV:281971-283330 4.76e-01 100 chrXV:287852-288444 2.43e-01 100 chrXV:300897-301895 9.58e-01 100 chrXV:340150-340629 6.06e-05 6_[+2(2.97e-08)]_73 chrXV:353920-354306 6.27e-05 24_[+2(9.58e-09)]_55 chrXV:438468-439018 4.34e-05 15_[+1(1.11e-08)]_64 chrXV:444645-446387 4.32e-01 100 chrXV:464276-464955 9.93e-01 100 chrXV:487430-487771 9.18e-01 100 chrXV:505009-505493 8.04e-01 100 chrXV:571734-572147 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3.26e-03 59_[-3(6.71e-07)]_28 chrXVI:281538-282959 9.84e-01 100 chrXVI:302651-304978 1.29e-01 100 chrXVI:338617-339374 7.27e-01 100 chrXVI:340524-340767 8.33e-02 100 chrXVI:378642-378999 1.81e-04 44_[+3(1.08e-05)]_12_[+3(1.17e-06)]_\ 18 chrXVI:406199-406895 6.22e-01 100 chrXVI:432636-434114 4.30e-01 100 chrXVI:435510-436184 8.52e-01 100 chrXVI:519901-520537 6.08e-01 100 chrXVI:525789-526962 2.95e-01 100 chrXVI:559973-560498 3.91e-07 21_[-1(6.76e-07)]_36_[+2(1.17e-07)]_\ 1 chrXVI:572176-572630 9.18e-01 100 chrXVI:581843-582282 1.22e-04 54_[-2(6.10e-08)]_25 chrXVI:622278-623050 1.34e-01 100 chrXVI:642367-643430 8.85e-01 100 chrXVI:689379-689854 1.64e-09 3_[-2(1.94e-10)]_26_[+1(1.05e-06)]_\ 29 chrXVI:699774-700696 1.21e-02 74_[-3(7.42e-06)]_13 chrXVI:731906-732294 7.61e-03 53_[-3(2.21e-06)]_34 chrXVI:744077-744572 4.84e-06 14_[-2(1.37e-06)]_16_[+1(1.18e-06)]_\ 28 chrXVI:768630-769484 9.31e-01 100 chrXVI:775618-776033 1.83e-02 35_[+2(5.04e-06)]_44 chrXVI:794485-794834 5.40e-03 27_[-3(2.40e-06)]_5_[-3(6.71e-07)]_\ 42 chrXVI:795046-796169 3.18e-01 100 chrXVI:810573-811476 8.17e-01 100 chrXVI:819338-820320 3.72e-01 100 chrXVI:822682-824030 1.17e-01 100 chrXVI:856721-857154 2.25e-11 19_[-2(5.60e-09)]_17_[+1(8.28e-10)]_\ 22 chrXVI:860155-860707 3.14e-10 2_[-2(8.87e-07)]_15_[+1(4.83e-11)]_\ 41 chrXVI:879553-880569 2.96e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************