# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ACE2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ACE2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ACE2/seqs-shuffled
#   positives: 507 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ACE2/seqs-centered (Fri Jan 17 23:54:17 PST 2020)
#   negatives: 507 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/RM11-1A--ACE2/seqs-shuffled (Fri Jan 17 23:54:17 PST 2020)
#        host: kali.stanford.edu
#        when: Sat Jan 18 00:08:58 PST 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.301 C 0.199 G 0.203 T 0.297


MOTIF GGTTCRA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GGTTCRA    TYGAACC        101         10   2.3e-022   7.0e-018
#          GGTTCGA    TCGAACC         67          3   5.7e-018   1.7e-013
#          GGTTCAA    TTGAACC         34          7   8.8e-006   2.6e-001

letter-probability matrix: alength= 4 w= 7 nsites= 101 E= 7.0e-018
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.336634 0.000000 0.663366 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ADAAAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ADAAAAA    TTTTTHT        178         90   2.2e-010   6.6e-006
#          AAAAAAA    TTTTTTT        108         52   8.9e-007   2.7e-002
#          ATAAAAA    TTTTTAT         63         31   3.6e-004   1.1e+001
#          AGAAAAA    TTTTTCT         59         29   5.6e-004   1.7e+001

letter-probability matrix: alength= 4 w= 7 nsites= 219 E= 6.6e-006
1.000000 0.000000 0.000000 0.000000
0.506849 0.000000 0.228311 0.264840
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTGGTW DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AGTGGTW    WACCACT         50          7   8.2e-010   2.4e-005
#          AGTGGTA    TACCACT         25          2   2.2e-006   6.5e-002
#          AGTGGTT    AACCACT         32          5   2.6e-006   7.7e-002

letter-probability matrix: alength= 4 w= 7 nsites= 58 E= 2.4e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.431034 0.000000 0.000000 0.568966


MOTIF CCGTMCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCGTMCA    TGKACGG         26          1   1.5e-007   4.6e-003
#          CCGTACA    TGTACGG         18          1   3.3e-005   9.8e-001
#          CCGTCCA    TGGACGG          8          0   3.8e-003   1.1e+002

letter-probability matrix: alength= 4 w= 7 nsites= 27 E= 4.6e-003
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.703704 0.296296 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 17.02 seconds