Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.019259
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.057475
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.076148
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.015059
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.066258
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background
Finished invoke:
  name: bg  status: 0  time: 0.015003
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 968.718066
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 69.817919
Invoking:
  centrimo -seqlen 502 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.145479
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.561223
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary SSCKYWAMCMACTRGGCCAMRNRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.534471
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary GRTCMBSGGTTCGAYYCCSVK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.518253
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary GCGAMAASSKSMYRTKMTRRCCRTTAMACT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.341998
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary DCGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.240064
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary ACCACBA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.346834
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary ACCCADAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.220186
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary AAAAWAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.523487
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary CRGTAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.269013
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary ATCGTRAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.231096
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary AAGATTTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.236392
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary GYCAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.360571
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary GGCSCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.251531
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary CCAGTTSG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.209241
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -primary CGTTGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.276184
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif SSCKYWAMCMACTRGGCCAMRNRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.353931
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif GRTCMBSGGTTCGAYYCCSVK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.351685
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif GCGAMAASSKSMYRTKMTRRCCRTTAMACT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.366202
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif DCGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.24916
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif ACCACBA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.242397
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif ACCCADAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.259331
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif AAAAWAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.226591
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif CRGTAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.240349
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif ATCGTRAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.251081
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif AAGATTTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.248024
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif GYCAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.228069
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif GGCSCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.242308
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif CCAGTTSG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.247979
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background --motif CGTTGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/BY4742--ZAP1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.249501
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.156997
Done