******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:326575-327111 1.0000 100 chrVIII:139780-141147 1.0000 100 chrXV:79698-80168 1.0000 100 chrVII:95395-96108 1.0000 100 chrXI:202821-203310 1.0000 100 chrI:151577-151895 1.0000 100 chrIV:1301634-1302533 1.0000 100 chrXVI:821621-822285 1.0000 100 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100 chrVII:738854-739483 1.0000 100 chrXV:976167-976680 1.0000 100 chrXIII:433524-433800 1.0000 100 chrVIII:120777-121638 1.0000 100 chrVIII:296846-297257 1.0000 100 chrXV:882052-883004 1.0000 100 chrXI:618642-619268 1.0000 100 chrXV:842370-842978 1.0000 100 chrVIII:103827-104839 1.0000 100 chrXIII:224017-224677 1.0000 100 chrIV:1278582-1279063 1.0000 100 chrVIII:132812-133340 1.0000 100 chrXIV:500986-502884 1.0000 100 chrVIII:125882-127790 1.0000 100 chrVII:736179-736799 1.0000 100 chrVII:438534-440085 1.0000 100 chrXIII:480399-480898 1.0000 100 chrXIV:174036-174629 1.0000 100 chrXIV:89885-90161 1.0000 100 chrXII:818482-819762 1.0000 100 chrVIII:85133-85569 1.0000 100 chrIV:525662-527419 1.0000 100 chrIV:1075320-1075786 1.0000 100 chrXI:109330-110152 1.0000 100 chrXVI:432859-434351 1.0000 100 chrIV:915564-916227 1.0000 100 chrVII:479180-482880 1.0000 100 chrXIII:472882-473206 1.0000 100 chrXV:987185-987897 1.0000 100 chrVI:63949-65427 1.0000 100 chrXI:517747-518112 1.0000 100 chrXVI:109238-109503 1.0000 100 chrV:396135-397939 1.0000 100 chrX:631092-631192 1.0000 100 chrV:61031-62178 1.0000 100 chrXV:80373-81167 1.0000 100 chrXIV:330510-331195 1.0000 100 chrIII:236460-236687 1.0000 100 chrV:33760-34025 1.0000 100 chrXV:980469-981088 1.0000 100 chrIV:946124-946614 1.0000 100 chrIII:65969-68645 1.0000 100 chrIV:591603-591985 1.0000 100 chrIV:976265-976763 1.0000 100 chrXV:274466-275006 1.0000 100 chrXVI:653814-655013 1.0000 100 chrXII:489286-489582 1.0000 100 chrVIII:388666-389228 1.0000 100 chrXII:636432-640290 1.0000 100 chrII:680409-682207 1.0000 100 chrXIII:797920-798154 1.0000 100 chrVIII:517453-519040 1.0000 100 chrVIII:34403-36394 1.0000 100 chrXV:109491-111288 1.0000 100 chrXII:448486-448997 1.0000 100 chrII:159832-160043 1.0000 100 chrXIII:183768-184188 1.0000 100 chrXV:353878-354320 1.0000 100 chrXIV:499267-500802 1.0000 100 chrIX:131822-132120 1.0000 100 chrII:504505-504728 1.0000 100 chrXII:962828-963325 1.0000 100 chrVIII:461925-462255 1.0000 100 chrIV:1201516-1202056 1.0000 100 chrXI:326084-327577 1.0000 100 chrX:414723-414823 1.0000 100 chrXV:639175-639467 1.0000 100 chrM:58286-58452 1.0000 100 chrXVI:244023-244238 1.0000 100 chrXIII:768131-768674 1.0000 100 chrVII:440476-443114 1.0000 100 chrIX:438319-439887 1.0000 100 chrV:510568-511554 1.0000 100 chrXV:216236-216677 1.0000 100 chrVII:695605-697054 1.0000 100 chrXIV:721078-723146 1.0000 100 chrXII:731887-732330 1.0000 100 chrIX:231829-232337 1.0000 100 chrVII:227465-228297 1.0000 100 chrVII:783816-784877 1.0000 100 chrX:545440-545540 1.0000 100 chrXI:140705-142537 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.300 C 0.200 G 0.200 T 0.300 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ZAP1/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF SSCKYWAMCMACTRGGCCAMRNRVSC MEME-1 width = 26 sites = 104 llr = 1716 E-value = 3.0e-322 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCKYWAMCMACTRGGCCAMRNRVSC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 21111474:39::423::a333441: pos.-specific C 44623::5a5:9:12:a8:4221359 probability G 4512::1::21::357::::434331 matrix T ::24652::::1a2:::2:2221:1: bits 2.4 * 2.2 * * 1.9 * * * 1.7 * ** * * * Relative 1.4 * ** *** * Entropy 1.2 * *** **** * (23.8 bits) 1.0 * ** *** **** * 0.7 *** ** *** ***** ** 0.5 *** ********* ****** * ** 0.2 *** ********* ******* **** 0.0 -------------------------- Multilevel GGCTTTACCCACTAGGCCACGGGACC consensus CC GCATA A GAA T AAAAGG sequence C G C T C C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCKYWAMCMACTRGGCCAMRNRVSC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrVII:738854-739483 - 4 2.99e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGACC TAT chrIX:183285-183728 + 32 2.99e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGACC AGGAATTTGT chrV:551034-551594 + 69 2.99e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGACC TGTAAT chrV:442979-443508 + 57 2.99e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGACC AAATTTTAAT chrXIV:602092-602543 - 45 2.99e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAGAGACC ATTGTTATCT chrXIII:768131-768674 + 64 4.61e-12 GCTAAGGGAG CGCGCTACCGACTACGCCACACGCCC ATTTCTTATT chrVII:774121-774630 - 24 4.61e-12 GCTAAGGGAG CGCGCTACCGACTACGCCACACGCCC AATTAATTGA chrVI:204766-205213 + 32 4.61e-12 GCTAAGGGAG CGCGCTACCGACTACGCCACACGCCC GAACGTTTGT chrX:197182-197282 + 18 4.61e-12 GCTAAGGGAG CGCGCTACCGACTACGCCACACGCCC TAATATTATT chrIV:410153-410703 - 1 4.61e-12 GCTAAGGGAG CGCGCTACCGACTACGCCACACGCCC chrXV:854016-854451 + 51 3.21e-11 GCAAGGGAAG CGCGCTACCAACTGCGCCATGTGCCC TGATGACTGT chrXII:214711-215169 + 40 3.21e-11 GCAAGGGAAG CGCGCTACCAACTGCGCCATGTGCCC TAAAACGCGT chrIV:1150641-1151220 + 36 8.95e-11 TAGCAGGCAT CGCCTTAACCACTCGGCCACTGGGAC TGAAACACTT chrXII:784094-784592 - 61 8.95e-11 TAGCAGGCAT CGCCTTAACCACTCGGCCACTGGGAC GGTTGAACAA chrVIII:85133-85569 + 45 1.05e-10 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACC AAATTCTTAT chrXI:379455-379908 - 49 1.05e-10 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACC TATTAATCTG chrXII:687654-688177 + 42 1.05e-10 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACC TATTATTTAT chrXIII:372220-372749 + 59 1.05e-10 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACC AGGTTTTATT chrXI:307965-308449 + 35 1.05e-10 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrX:378153-378253 - 56 1.05e-10 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACC TATTAATTTA chrVII:412106-412620 + 29 1.05e-10 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACC AGTTTTTTGA chrV:438417-438999 - 42 1.05e-10 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACC TAATTTGTTG chrVII:823258-823699 - 54 1.05e-10 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACC ACTCTTATTG chrXV:663494-664248 + 39 1.05e-10 TTAAGCAGAT GCCATAACCGACTAGACCACGAAACC ACTATTTGTT chrVIII:132812-133340 + 56 1.24e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTGCC ACTTATTATA chrX:523830-523930 + 41 1.24e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTGCC TTTAATCTCT chrI:182356-182804 + 48 1.24e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTGCC AAAATTGTAT chrII:226852-227373 - 13 1.24e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTGCC TCGTTTTACA chrIV:980771-981297 + 46 1.24e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAGTTGCC TCAATTTACA chrXV:353878-354320 + 39 1.69e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCATAGAAGC AGTAAACCGT chrII:266180-266666 - 5 1.69e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCATAGAAGC AGTT chrXIV:560531-560997 + 26 1.69e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCATAGAAGC CCGTTATTAC chrX:58926-59026 + 23 1.69e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCATAGAAGC TTCTATTTTA chrIV:434007-434570 + 73 1.69e-10 ACTAGTGTGG CGCCTTACCAACTTGGCCATAGAAGC TT chrXV:113571-114000 - 67 1.69e-10 TAGTGTGG CGCCTTACCAACTTGGCCATAGAAGC TAAATCTCTG chrIII:227727-228226 - 16 2.30e-10 TCGAGTCTCT CGCCTTAACCACTCGGCCATAGTGCC ATTTCGATTT chrXII:731887-732330 - 32 2.67e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAAACTCCC ATTGTATGTT chrXI:74364-74944 - 20 9.53e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATGGAGTC TAATTGCTAT chrIII:127499-127889 - 72 9.53e-10 CAC GCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrVI:137231-137911 + 13 9.53e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATGGAGTC AGTCACTTTT chrXV:228072-228596 - 47 9.53e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATGGAGTC TAATATTTTA chrXV:487212-487728 - 19 9.53e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATGGAGTC TAACTTTGTT chrXII:605138-605635 + 71 1.09e-09 ATAAGCACGA AGCTCTAACCACTGAGCTACACGAGC ATTT chrIV:1201516-1202056 - 14 3.00e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAGGC TATTTATTTG chrXIII:480399-480898 + 70 3.00e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAGGC TACTT chrIV:1352317-1352770 + 20 3.00e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAGGC TATTTCGTTG chrVI:226509-226940 + 61 3.00e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAGGC ATTTTAATCT chrVII:121978-122563 - 49 3.00e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAGGC TAATTCGTTG chrVII:205304-205831 - 4 3.00e-09 TGAATCAGGC GCCTTAGACCGCTCGGCCAAACAACC ACT chrV:435615-436032 + 26 3.00e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAACAAGGC TCTTATTGTT chrIV:1461482-1462086 + 70 3.00e-09 TGAATCAGGC GCCTTAGACCGCTCGGCCAAACAACC ACTTA chrXIII:183768-184188 + 15 1.30e-08 TGGCAACGTT GGATTTTACCACTAAACCACTTGCGC GATCTTTATT chrXVI:860135-860656 - 34 1.30e-08 TGGCAACGTT GGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrXV:281869-282463 - 48 1.30e-08 TGGCAACGTT GGATTTTACCACTAAACCACTTGCGC GCTTTCATGT chrVI:161988-162479 - 45 1.30e-08 TGGCAACGTT GGATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrX:396598-396698 + 6 1.30e-08 ACGTT GGATTTTACCACTAAACCACTTGCGC TTACTTTTGA chrIV:83311-83793 - 46 1.30e-08 TGGCAACGTT GGATTTTACCACTAAACCACTTGCGC TAAGTGAACT chrIV:992601-993067 - 48 1.30e-08 TGGCAACGTT GGATTTTACCACTAAACCACTTGCGC TCACAATTGT chrXII:962828-963325 + 4 1.60e-08 GCC GCCTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrX:424291-424391 + 16 1.60e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrXI:83972-84452 - 46 1.60e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAACCCTCC ATACAAATTT chrII:347361-347841 - 52 1.60e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAACCCTCC GTATAAATGA chrVIII:388666-389228 + 73 1.97e-08 CCCAAAGCGA GAATCATACCACTAGACCACACGCCC AT chrXV:976167-976680 - 48 1.97e-08 ATGAGACTGA CGCTCTTCCTACTGAGCTACTGAAGC GCACAAAATA chrIV:1175585-1176087 - 43 1.97e-08 ATGAGACTGA CGCTCTTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrXIII:572652-573178 + 65 1.97e-08 ATGAGACTGA CGCTCTTCCTACTGAGCTACTGAAGC TGTCTGTTAT chrXIII:195927-196415 + 24 1.97e-08 CCCAAAGCGA GAATCATACCACTAGACCACACGCCC TTGTGAACTT chrXII:92311-92877 - 4 1.97e-08 CCCAAAGCGA GAATCATACCACTAGACCACACGCCC TTA chrX:422696-422796 - 6 1.97e-08 ATGAGACTGA CGCTCTTCCTACTGAGCTACTGAAGC ATACA chrVI:101137-101602 - 57 1.97e-08 CCCAAAGCGA GAATCATACCACTAGACCACACGCCC GAATTATTGT chrII:326575-327111 + 47 5.67e-08 TAAAGGCGAC GTCTTGAACCACTGGACCATTGGACC CGGAACTCGA chrXIV:374668-375082 - 44 8.11e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAGTCCGC TTATTTTTCT chrXV:438436-438945 - 3 8.11e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAACAAGGA TG chrXII:875181-875663 - 4 8.11e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAACAAGGA TGA chrXII:448486-448997 + 5 1.24e-07 CGAA AGTGATAACCACTACACTATAGGACC GGAACTTCTT chrV:250093-250564 - 8 1.24e-07 CAAAACCGAA AGTGATAACCACTACACTATAGGACC AGTACAA chrIV:644945-645441 + 56 1.24e-07 CAAAACCGAA AGTGATAACCACTACACTATAGGACC GTAACAACTG chrIV:802543-803035 + 38 1.24e-07 CAAAACCGAA AGTGATAACCACTACACTATAGGACC GACAATTCAT chrII:36160-36607 - 65 1.47e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAATCCGC TTACAACTAA chrXI:46495-47018 + 75 1.87e-07 TACGAGTGCG ATGCCTTACCACTTGGCCAAAAGGGC chrII:350590-351123 - 21 2.76e-07 CAAAACCGAA AGTGATAACCACTACACTATAAAACC CTTTTATTGA chrV:130871-131422 + 32 2.76e-07 CAAAACCGAA AGTGATAACCACTACACTATAAAACC TCTTAATTAT chrVIII:466743-467271 - 33 2.98e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAAGGAGGC TAAAAATACA chrVII:1004008-1004405 - 60 2.98e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAAGGAGGC AAACCCTTGA chrXIII:923145-924374 + 63 3.46e-07 AATGGAACAG GGTATAGACCACTGAGGCAAGTGCCG TGCATAATGA chrXIII:837695-838231 - 15 4.30e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACCGAGAG TCAATTAACT chrVI:167241-167657 - 38 4.30e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACCGAGAG TCGTTTTTGT chrVI:210417-210897 + 75 4.30e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACCGAGAG chrX:354005-354105 - 19 4.30e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACCGAGAG TGATAAATGA chrXIII:168565-169067 - 29 4.30e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACCGAGAG TGACTATTTT chrXI:490702-491202 - 66 5.32e-07 GTAGCCAGA CGCCGTGACCATTGGGCCACGAGGAA CAAGAATTAT chrXI:0-1065 - 67 5.70e-07 TTGCACAG GGTATAAACCGCTGAGGCAAGTGCCG TGAATAATGA chrXIV:631686-632139 + 30 6.54e-07 CCCTAAGCGA GAATCATACCTCTAGACCACACGCCC GGTAGAAGTT chrIV:1256868-1257296 + 22 6.54e-07 GGGAAGCATG AATTCTAACCACTGAACCACTTTCGC TAAGAAGATC chrVIII:34403-36394 + 28 7.00e-07 AGCGTCAATG GTAGAAACCAACTTAGCCAAAGCAGC TTCGTCTTCG chrII:405528-406218 - 55 9.12e-07 TAGAAGTCAG ACGCGTTGCCATTACGCCACGCGAGC TACTATTTGT chrXIII:131560-132266 + 8 9.12e-07 AAGTCAG ACGCGTTGCCATTACGCCACGCGAGC TAAATTTCTT chrXI:162252-162773 + 71 9.12e-07 TAGAAGTCAG ACGCGTTGCCATTACGCCACGCGAGC TAAT chrXI:665547-666798 + 15 1.33e-06 AATGGCACAG GGTATAGACCGCTGAGGCAAGTGCCG TGCATAATGA chrI:229170-230195 + 14 1.33e-06 AATGGGACAG GGTATAGACCGCTGAGGCAAGTGCCG TGTATGGTGA chrIV:1524078-1525667 + 36 1.33e-06 AATGGCACAG GGTATAGACCGCTGAGGCAAGTGCCG TGTATAATGA chrXII:489286-489582 - 35 2.82e-06 AGTTTCGCGT ATGGTCACCCACTACACTACTCGGTC AGGCTCTTAC chrXII:468747-468980 - 70 2.82e-06 CGCGT ATGGTCACCCACTACACTACTCGGTC AGGCTCTTAC chrIV:1075320-1075786 + 16 3.49e-06 GTGAAGGCAA CGTGATAGCCGCTACACTATTGGAAC AATATTACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCKYWAMCMACTRGGCCAMRNRVSC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:738854-739483 3e-12 3_[-1]_71 chrIX:183285-183728 3e-12 31_[+1]_43 chrV:551034-551594 3e-12 68_[+1]_6 chrV:442979-443508 3e-12 56_[+1]_18 chrXIV:602092-602543 3e-12 44_[-1]_30 chrXIII:768131-768674 4.6e-12 63_[+1]_11 chrVII:774121-774630 4.6e-12 23_[-1]_51 chrVI:204766-205213 4.6e-12 31_[+1]_43 chrX:197182-197282 4.6e-12 17_[+1]_57 chrIV:410153-410703 4.6e-12 [-1]_74 chrXV:854016-854451 3.2e-11 50_[+1]_24 chrXII:214711-215169 3.2e-11 39_[+1]_35 chrIV:1150641-1151220 8.9e-11 35_[+1]_39 chrXII:784094-784592 8.9e-11 60_[-1]_14 chrVIII:85133-85569 1.1e-10 44_[+1]_30 chrXI:379455-379908 1.1e-10 48_[-1]_26 chrXII:687654-688177 1.1e-10 41_[+1]_33 chrXIII:372220-372749 1.1e-10 58_[+1]_16 chrXI:307965-308449 1.1e-10 34_[+1]_40 chrX:378153-378253 1.1e-10 55_[-1]_19 chrVII:412106-412620 1.1e-10 28_[+1]_46 chrV:438417-438999 1.1e-10 41_[-1]_33 chrVII:823258-823699 1.1e-10 53_[-1]_21 chrXV:663494-664248 1.1e-10 38_[+1]_36 chrVIII:132812-133340 1.2e-10 55_[+1]_19 chrX:523830-523930 1.2e-10 40_[+1]_34 chrI:182356-182804 1.2e-10 47_[+1]_27 chrII:226852-227373 1.2e-10 12_[-1]_62 chrIV:980771-981297 1.2e-10 45_[+1]_29 chrXV:353878-354320 1.7e-10 38_[+1]_36 chrII:266180-266666 1.7e-10 4_[-1]_70 chrXIV:560531-560997 1.7e-10 25_[+1]_49 chrX:58926-59026 1.7e-10 22_[+1]_52 chrIV:434007-434570 1.7e-10 72_[+1]_2 chrXV:113571-114000 1.7e-10 66_[-1]_8 chrIII:227727-228226 2.3e-10 15_[-1]_59 chrXII:731887-732330 2.7e-10 31_[-1]_43 chrXI:74364-74944 9.5e-10 19_[-1]_55 chrIII:127499-127889 9.5e-10 71_[-1]_3 chrVI:137231-137911 9.5e-10 12_[+1]_62 chrXV:228072-228596 9.5e-10 46_[-1]_28 chrXV:487212-487728 9.5e-10 18_[-1]_56 chrXII:605138-605635 1.1e-09 70_[+1]_4 chrIV:1201516-1202056 3e-09 13_[-1]_61 chrXIII:480399-480898 3e-09 69_[+1]_5 chrIV:1352317-1352770 3e-09 19_[+1]_55 chrVI:226509-226940 3e-09 60_[+1]_14 chrVII:121978-122563 3e-09 48_[-1]_26 chrVII:205304-205831 3e-09 3_[-1]_71 chrV:435615-436032 3e-09 25_[+1]_49 chrIV:1461482-1462086 3e-09 69_[+1]_5 chrXIII:183768-184188 1.3e-08 14_[+1]_60 chrXVI:860135-860656 1.3e-08 33_[-1]_41 chrXV:281869-282463 1.3e-08 47_[-1]_27 chrVI:161988-162479 1.3e-08 44_[-1]_30 chrX:396598-396698 1.3e-08 5_[+1]_69 chrIV:83311-83793 1.3e-08 45_[-1]_29 chrIV:992601-993067 1.3e-08 47_[-1]_27 chrXII:962828-963325 1.6e-08 3_[+1]_71 chrX:424291-424391 1.6e-08 15_[+1]_59 chrXI:83972-84452 1.6e-08 45_[-1]_29 chrII:347361-347841 1.6e-08 51_[-1]_23 chrVIII:388666-389228 2e-08 72_[+1]_2 chrXV:976167-976680 2e-08 47_[-1]_27 chrIV:1175585-1176087 2e-08 42_[-1]_32 chrXIII:572652-573178 2e-08 64_[+1]_10 chrXIII:195927-196415 2e-08 23_[+1]_51 chrXII:92311-92877 2e-08 3_[-1]_71 chrX:422696-422796 2e-08 5_[-1]_69 chrVI:101137-101602 2e-08 56_[-1]_18 chrII:326575-327111 5.7e-08 46_[+1]_28 chrXIV:374668-375082 8.1e-08 43_[-1]_31 chrXV:438436-438945 8.1e-08 2_[-1]_72 chrXII:875181-875663 8.1e-08 3_[-1]_71 chrXII:448486-448997 1.2e-07 4_[+1]_70 chrV:250093-250564 1.2e-07 7_[-1]_67 chrIV:644945-645441 1.2e-07 55_[+1]_19 chrIV:802543-803035 1.2e-07 37_[+1]_37 chrII:36160-36607 1.5e-07 64_[-1]_10 chrXI:46495-47018 1.9e-07 74_[+1] chrII:350590-351123 2.8e-07 20_[-1]_54 chrV:130871-131422 2.8e-07 31_[+1]_43 chrVIII:466743-467271 3e-07 32_[-1]_42 chrVII:1004008-1004405 3e-07 59_[-1]_15 chrXIII:923145-924374 3.5e-07 62_[+1]_12 chrXIII:837695-838231 4.3e-07 14_[-1]_60 chrVI:167241-167657 4.3e-07 37_[-1]_37 chrVI:210417-210897 4.3e-07 74_[+1] chrX:354005-354105 4.3e-07 18_[-1]_56 chrXIII:168565-169067 4.3e-07 28_[-1]_46 chrXI:490702-491202 5.3e-07 65_[-1]_9 chrXI:0-1065 5.7e-07 66_[-1]_8 chrXIV:631686-632139 6.5e-07 29_[+1]_45 chrIV:1256868-1257296 6.5e-07 21_[+1]_53 chrVIII:34403-36394 7e-07 27_[+1]_47 chrII:405528-406218 9.1e-07 54_[-1]_20 chrXIII:131560-132266 9.1e-07 7_[+1]_67 chrXI:162252-162773 9.1e-07 70_[+1]_4 chrXI:665547-666798 1.3e-06 14_[+1]_60 chrI:229170-230195 1.3e-06 13_[+1]_61 chrIV:1524078-1525667 1.3e-06 35_[+1]_39 chrXII:489286-489582 2.8e-06 34_[-1]_40 chrXII:468747-468980 2.8e-06 69_[-1]_5 chrIV:1075320-1075786 3.5e-06 15_[+1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCKYWAMCMACTRGGCCAMRNRVSC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCKYWAMCMACTRGGCCAMRNRVSC width=26 seqs=104 chrVII:738854-739483 ( 4) GCCTTAACCAACTGGGCCAAGAGACC 1 chrIX:183285-183728 ( 32) GCCTTAACCAACTGGGCCAAGAGACC 1 chrV:551034-551594 ( 69) GCCTTAACCAACTGGGCCAAGAGACC 1 chrV:442979-443508 ( 57) GCCTTAACCAACTGGGCCAAGAGACC 1 chrXIV:602092-602543 ( 45) GCCTTAACCAACTGGGCCAAGAGACC 1 chrXIII:768131-768674 ( 64) CGCGCTACCGACTACGCCACACGCCC 1 chrVII:774121-774630 ( 24) CGCGCTACCGACTACGCCACACGCCC 1 chrVI:204766-205213 ( 32) CGCGCTACCGACTACGCCACACGCCC 1 chrX:197182-197282 ( 18) CGCGCTACCGACTACGCCACACGCCC 1 chrIV:410153-410703 ( 1) CGCGCTACCGACTACGCCACACGCCC 1 chrXV:854016-854451 ( 51) CGCGCTACCAACTGCGCCATGTGCCC 1 chrXII:214711-215169 ( 40) CGCGCTACCAACTGCGCCATGTGCCC 1 chrIV:1150641-1151220 ( 36) CGCCTTAACCACTCGGCCACTGGGAC 1 chrXII:784094-784592 ( 61) CGCCTTAACCACTCGGCCACTGGGAC 1 chrVIII:85133-85569 ( 45) GCCATAACCGACTAGACCACGAAACC 1 chrXI:379455-379908 ( 49) GCCATAACCGACTAGACCACGAAACC 1 chrXII:687654-688177 ( 42) GCCATAACCGACTAGACCACGAAACC 1 chrXIII:372220-372749 ( 59) GCCATAACCGACTAGACCACGAAACC 1 chrXI:307965-308449 ( 35) GCCATAACCGACTAGACCACGAAACC 1 chrX:378153-378253 ( 56) GCCATAACCGACTAGACCACGAAACC 1 chrVII:412106-412620 ( 29) GCCATAACCGACTAGACCACGAAACC 1 chrV:438417-438999 ( 42) GCCATAACCGACTAGACCACGAAACC 1 chrVII:823258-823699 ( 54) GCCATAACCGACTAGACCACGAAACC 1 chrXV:663494-664248 ( 39) GCCATAACCGACTAGACCACGAAACC 1 chrVIII:132812-133340 ( 56) CGCCTTAACCACTCGGCCAAGTTGCC 1 chrX:523830-523930 ( 41) CGCCTTAACCACTCGGCCAAGTTGCC 1 chrI:182356-182804 ( 48) CGCCTTAACCACTCGGCCAAGTTGCC 1 chrII:226852-227373 ( 13) CGCCTTAACCACTCGGCCAAGTTGCC 1 chrIV:980771-981297 ( 46) CGCCTTAACCACTCGGCCAAGTTGCC 1 chrXV:353878-354320 ( 39) CGCCTTACCAACTTGGCCATAGAAGC 1 chrII:266180-266666 ( 5) CGCCTTACCAACTTGGCCATAGAAGC 1 chrXIV:560531-560997 ( 26) CGCCTTACCAACTTGGCCATAGAAGC 1 chrX:58926-59026 ( 23) CGCCTTACCAACTTGGCCATAGAAGC 1 chrIV:434007-434570 ( 73) CGCCTTACCAACTTGGCCATAGAAGC 1 chrXV:113571-114000 ( 67) CGCCTTACCAACTTGGCCATAGAAGC 1 chrIII:227727-228226 ( 16) CGCCTTAACCACTCGGCCATAGTGCC 1 chrXII:731887-732330 ( 32) GCCTTAAACCACTCGGCCAAACTCCC 1 chrXI:74364-74944 ( 20) GCCTTAACCAACTTGGCCATGGAGTC 1 chrIII:127499-127889 ( 72) GCCTTAACCAACTTGGCCATGGAGTC 1 chrVI:137231-137911 ( 13) GCCTTAACCAACTTGGCCATGGAGTC 1 chrXV:228072-228596 ( 47) GCCTTAACCAACTTGGCCATGGAGTC 1 chrXV:487212-487728 ( 19) GCCTTAACCAACTTGGCCATGGAGTC 1 chrXII:605138-605635 ( 71) AGCTCTAACCACTGAGCTACACGAGC 1 chrIV:1201516-1202056 ( 14) CGCGCTACCGATTGCGCCAACAAGGC 1 chrXIII:480399-480898 ( 70) CGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1352317-1352770 ( 20) CGCGCTACCGATTGCGCCAACAAGGC 1 chrVI:226509-226940 ( 61) CGCGCTACCGATTGCGCCAACAAGGC 1 chrVII:121978-122563 ( 49) CGCGCTACCGATTGCGCCAACAAGGC 1 chrVII:205304-205831 ( 4) GCCTTAGACCGCTCGGCCAAACAACC 1 chrV:435615-436032 ( 26) CGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1461482-1462086 ( 70) GCCTTAGACCGCTCGGCCAAACAACC 1 chrXIII:183768-184188 ( 15) GGATTTTACCACTAAACCACTTGCGC 1 chrXVI:860135-860656 ( 34) GGATTTTACCACTAAACCACTTGCGC 1 chrXV:281869-282463 ( 48) GGATTTTACCACTAAACCACTTGCGC 1 chrVI:161988-162479 ( 45) GGATTTTACCACTAAACCACTTGCGC 1 chrX:396598-396698 ( 6) GGATTTTACCACTAAACCACTTGCGC 1 chrIV:83311-83793 ( 46) GGATTTTACCACTAAACCACTTGCGC 1 chrIV:992601-993067 ( 48) GGATTTTACCACTAAACCACTTGCGC 1 chrXII:962828-963325 ( 4) GCCTTAGACCACTCGGCCAACCCTCC 1 chrX:424291-424391 ( 16) GCCTTAGACCACTCGGCCAACCCTCC 1 chrXI:83972-84452 ( 46) GCCTTAGACCACTCGGCCAACCCTCC 1 chrII:347361-347841 ( 52) GCCTTAGACCACTCGGCCAACCCTCC 1 chrVIII:388666-389228 ( 73) GAATCATACCACTAGACCACACGCCC 1 chrXV:976167-976680 ( 48) CGCTCTTCCTACTGAGCTACTGAAGC 1 chrIV:1175585-1176087 ( 43) CGCTCTTCCTACTGAGCTACTGAAGC 1 chrXIII:572652-573178 ( 65) CGCTCTTCCTACTGAGCTACTGAAGC 1 chrXIII:195927-196415 ( 24) GAATCATACCACTAGACCACACGCCC 1 chrXII:92311-92877 ( 4) GAATCATACCACTAGACCACACGCCC 1 chrX:422696-422796 ( 6) CGCTCTTCCTACTGAGCTACTGAAGC 1 chrVI:101137-101602 ( 57) GAATCATACCACTAGACCACACGCCC 1 chrII:326575-327111 ( 47) GTCTTGAACCACTGGACCATTGGACC 1 chrXIV:374668-375082 ( 44) CGCTCTCCCAACTGAGCTAAGTCCGC 1 chrXV:438436-438945 ( 3) CGCTCTACCAACTGAGCTAACAAGGA 1 chrXII:875181-875663 ( 4) CGCTCTACCAACTGAGCTAACAAGGA 1 chrXII:448486-448997 ( 5) AGTGATAACCACTACACTATAGGACC 1 chrV:250093-250564 ( 8) AGTGATAACCACTACACTATAGGACC 1 chrIV:644945-645441 ( 56) AGTGATAACCACTACACTATAGGACC 1 chrIV:802543-803035 ( 38) AGTGATAACCACTACACTATAGGACC 1 chrII:36160-36607 ( 65) CGCTCTCCCAACTGAGCTAAATCCGC 1 chrXI:46495-47018 ( 75) ATGCCTTACCACTTGGCCAAAAGGGC 1 chrII:350590-351123 ( 21) AGTGATAACCACTACACTATAAAACC 1 chrV:130871-131422 ( 32) AGTGATAACCACTACACTATAAAACC 1 chrVIII:466743-467271 ( 33) ACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:1004008-1004405 ( 60) ACGCTCTACCACTAAGCTAAGGAGGC 1 chrXIII:923145-924374 ( 63) GGTATAGACCACTGAGGCAAGTGCCG 1 chrXIII:837695-838231 ( 15) CCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:167241-167657 ( 38) CCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:210417-210897 ( 75) CCTTAAACCAACTTGGCTACCGAGAG 1 chrX:354005-354105 ( 19) CCTTAAACCAACTTGGCTACCGAGAG 1 chrXIII:168565-169067 ( 29) CCTTAAACCAACTTGGCTACCGAGAG 1 chrXI:490702-491202 ( 66) CGCCGTGACCATTGGGCCACGAGGAA 1 chrXI:0-1065 ( 67) GGTATAAACCGCTGAGGCAAGTGCCG 1 chrXIV:631686-632139 ( 30) GAATCATACCTCTAGACCACACGCCC 1 chrIV:1256868-1257296 ( 22) AATTCTAACCACTGAACCACTTTCGC 1 chrVIII:34403-36394 ( 28) GTAGAAACCAACTTAGCCAAAGCAGC 1 chrII:405528-406218 ( 55) ACGCGTTGCCATTACGCCACGCGAGC 1 chrXIII:131560-132266 ( 8) ACGCGTTGCCATTACGCCACGCGAGC 1 chrXI:162252-162773 ( 71) ACGCGTTGCCATTACGCCACGCGAGC 1 chrXI:665547-666798 ( 15) GGTATAGACCGCTGAGGCAAGTGCCG 1 chrI:229170-230195 ( 14) GGTATAGACCGCTGAGGCAAGTGCCG 1 chrIV:1524078-1525667 ( 36) GGTATAGACCGCTGAGGCAAGTGCCG 1 chrXII:489286-489582 ( 35) ATGGTCACCCACTACACTACTCGGTC 1 chrXII:468747-468980 ( 70) ATGGTCACCCACTACACTACTCGGTC 1 chrIV:1075320-1075786 ( 16) CGTGATAGCCGCTACACTATTGGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCKYWAMCMACTRGGCCAMRNRVSC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 45000 bayes= 10.3862 E= 3.0e-322 -102 110 123 -1334 -243 91 151 -269 -131 173 -130 -85 -111 10 23 48 -131 56 -230 84 41 -230 -429 79 109 -330 -84 -56 48 148 -230 -1334 -1334 240 -1334 -1334 -21 138 10 -301 157 -1334 -149 -501 -1334 226 -1334 -169 -1334 -1334 -1334 168 34 -39 61 -85 -37 35 146 -1334 3 -1334 185 -1334 -1334 233 -197 -1334 -1334 201 -1334 -37 168 -1334 -1334 -1334 15 123 -1334 -56 -11 -21 99 -85 -26 23 70 -56 44 -149 119 -202 31 51 70 -301 -185 140 87 -221 -343 221 -97 -1334 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCKYWAMCMACTRGGCCAMRNRVSC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 104 E= 3.0e-322 0.153846 0.403846 0.442308 0.000000 0.057692 0.355769 0.538462 0.048077 0.125000 0.625000 0.076923 0.173077 0.144231 0.201923 0.221154 0.432692 0.125000 0.278846 0.038462 0.557692 0.413462 0.038462 0.009615 0.538462 0.663462 0.019231 0.105769 0.211538 0.432692 0.528846 0.038462 0.000000 0.000000 1.000000 0.000000 0.000000 0.269231 0.490385 0.201923 0.038462 0.923077 0.000000 0.067308 0.009615 0.000000 0.903846 0.000000 0.096154 0.000000 0.000000 0.000000 1.000000 0.394231 0.144231 0.288462 0.173077 0.240385 0.240385 0.519231 0.000000 0.317308 0.000000 0.682692 0.000000 0.000000 0.951923 0.048077 0.000000 0.000000 0.759615 0.000000 0.240385 1.000000 0.000000 0.000000 0.000000 0.346154 0.442308 0.000000 0.211538 0.288462 0.163462 0.375000 0.173077 0.259615 0.221154 0.307692 0.211538 0.423077 0.067308 0.432692 0.076923 0.384615 0.269231 0.307692 0.038462 0.086538 0.500000 0.346154 0.067308 0.028846 0.875000 0.096154 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCKYWAMCMACTRGGCCAMRNRVSC MEME-1 regular expression -------------------------------------------------------------------------------- [GC][GC]C[TGC][TC][TA][AT][CA]C[CAG]ACT[AG][GAC][GA]C[CT]A[CAT][GA][GACT][GA][AGC][CG]C -------------------------------------------------------------------------------- Time 353.22 secs. ******************************************************************************** ******************************************************************************** MOTIF GRTCMBSGGTTCGAYYCCSVK MEME-2 width = 21 sites = 80 llr = 1369 E-value = 7.3e-257 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-2 Description -------------------------------------------------------------------------------- Simplified A 242:3:12::::3a2:::131 pos.-specific C 1:185341:::a::24a7542 probability G 76::2458a:::8:1::1445 matrix T ::72131::aa:::56:2::3 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * ****** * Entropy 1.2 * * ******* * (24.7 bits) 1.0 ** * ******** **** 0.7 ** * ******** ***** 0.5 ************** ****** 0.2 ********************* 0.0 --------------------- Multilevel GGTCCGGGGTTCGATTCCCCG consensus AATACC A CC TGGT sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrVI:180683-181264 - 59 2.93e-11 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCAGT chrXVI:860135-860656 + 76 2.93e-11 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTG chrX:531599-531699 + 15 2.93e-11 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCAGT chrXVI:571983-572724 + 8 2.93e-11 ATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCAAT chrVII:738854-739483 + 49 9.77e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATT chrXIII:290560-291134 + 47 9.77e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TAGCGGAGTT chrVII:401369-401783 - 9 9.77e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAG chrIV:667769-668270 - 46 9.77e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATT chrVII:541599-542165 + 61 9.77e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTG chrIX:197329-197966 + 38 9.77e-11 CTCACCGTGG AGACCGGGGTTCGACTCCCCG CTTCGGAGTT chrV:551034-551594 - 29 9.77e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCAAT chrV:442979-443508 - 17 9.77e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATA chrII:644954-645447 + 60 9.77e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTT chrXVI:880006-880576 - 63 9.77e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATT chrV:176862-177397 + 63 9.77e-11 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTA chrVII:328365-328978 + 5 9.77e-11 GTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTT chrXV:854016-854451 - 12 1.14e-10 GCAAGGAAGA GGTCATCGGTTCGATTCCGGT TGCGTCCAAT chrV:311757-312301 - 52 1.14e-10 GCAAGGAAGA GGTCATCGGTTCGATTCCGGT TGCGTCCAAT chrXII:214711-215169 - 1 1.14e-10 GCAAGGAAGA GGTCATCGGTTCGATTCCGGT chrX:414723-414823 + 43 4.93e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTAA chrIV:1201516-1202056 + 58 4.93e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTAA chrXIII:480399-480898 - 31 4.93e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTC chrVI:226509-226940 - 22 4.93e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTA chrVII:876150-876747 + 40 4.93e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrXI:202821-203310 + 28 4.93e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrVIII:388666-389228 - 4 8.44e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAG CTC chrXV:980469-981088 + 31 8.44e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAG CTCGCCCCTT chrXIV:546946-547412 + 39 8.44e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAG CTCGCCCCGT chrXII:92311-92877 + 78 8.44e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAG CT chrIV:488476-489106 - 64 2.54e-09 ACACGGCGAA GATCCCGAGTTCGAACCTCGG TTGGATCAGA chrII:326575-327111 - 7 2.54e-09 ACACGGCGAA GATCCCGAGTTCGAACCTCGG TTGGAT chrXI:578758-579347 + 30 2.85e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXV:438436-438945 + 70 2.85e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXII:875181-875663 + 71 2.85e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCT ATGAGGAGT chrXIII:768131-768674 - 25 3.56e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCGGA CTCGTCCAAA chrXIII:320965-321336 - 55 3.56e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCGGA CTCGTCCATT chrVII:774121-774630 + 68 3.56e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCGGA CTCGTCCAAA chrXII:656674-657196 - 57 3.56e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCGGA CTCGTCCAAG chrIV:410153-410703 + 45 3.56e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCGGA CTCGTCCAAA chrVII:828458-829021 - 42 3.98e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrX:374188-374288 - 62 3.98e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrXI:162252-162773 - 33 3.98e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGTT chrII:350590-351123 + 64 3.98e-09 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAAGACCTTA chrVII:405265-405790 + 36 3.98e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrV:250093-250564 + 51 3.98e-09 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAGGACCTTT chrIV:644945-645441 - 18 3.98e-09 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAGGACCTTT chrXI:46495-47018 - 37 4.44e-09 GTAATGCGGG GATCGTGGGTTCAATTCCCAC AGAGGGCATT chrVII:544348-544913 - 5 6.14e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGC chrXIII:463298-463891 + 53 6.14e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXII:426894-427465 + 46 6.14e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGGAGAA chrVIII:85133-85569 - 5 6.82e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAA chrXII:687654-688177 - 2 6.82e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG C chrXIII:372220-372749 - 19 6.82e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCATT chrIX:174805-175425 + 10 1.83e-08 TAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCAAT chrII:266180-266666 + 49 1.83e-08 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCATT chrIV:434007-434570 - 34 1.83e-08 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCATA chrIX:325522-326084 + 39 1.83e-08 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCAAT chrXIII:807914-808562 - 66 2.64e-08 CTGATCCGAA CAACCCCAGTTCGAATCCGGG TGGGACCTTC chrVI:157663-158248 - 19 2.88e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAG AATTCGCATT chrXVI:622302-622853 - 21 2.88e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAG AATTCGCATT chrXIII:352083-352619 + 41 2.88e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAG AATTCGCATT chrIV:946124-946614 + 53 3.15e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCC CCGGGAGATT chrXIII:837695-838231 + 75 3.15e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCC CCGGG chrVI:210417-210897 - 20 3.15e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCC CCGGGAGATA chrX:354005-354105 + 79 3.15e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCC C chrXI:74364-74944 + 65 1.06e-07 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGCT chrVII:730929-731445 + 45 1.06e-07 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXIII:572652-573178 - 26 1.06e-07 ATAATCTGAA GGTCGAGAGTTCGAACCTCCC CTGGAGCACA chrX:422696-422796 + 50 1.06e-07 ATAATCTGAA GGTCGAGAGTTCGAACCTCCC CTGGAGCACA chrXV:487212-487728 + 64 1.06e-07 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXII:975729-976266 - 44 1.06e-07 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrVIII:466743-467271 + 76 1.76e-07 GTAATGCAAA GGTCGCTAGTTCAATTCTGGC AGGT chrV:492151-492592 - 39 2.63e-07 CGAACCAGAA GATTCCAGGTTCAAGTCCTGG CGGGGAAGGA chrXI:313169-313685 - 32 2.81e-07 GTGGCCGATG AAACCCTGGTTCGATTCTAGG AGATGGCATT chrXIII:362857-363304 + 77 2.81e-07 GTGGCCGATG AAACCCTGGTTCGATTCTAGG AGA chrVII:287056-287713 - 24 2.81e-07 GCAATCGAAG GGTTGCAGGTTCAATTCCTGT CCGTTTCATT chrVII:319579-320146 + 12 2.81e-07 GTGGCCGATG AAACCCTGGTTCGATTCTAGG AGATGGCATT chrXVI:55837-56516 - 51 2.81e-07 GCAATCGAAG GGTTGCAGGTTCAATTCCTGT CCGTTTCAAT chrVII:110412-110931 - 12 2.81e-07 GTGGCCGATG AAACCCTGGTTCGATTCTAGG AGATGGCAAT chrXIV:725882-726419 + 39 1.05e-06 AATACTGAAG GATGCGAGGTTCGAACTCGCG CGGACAACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVI:180683-181264 2.9e-11 58_[-2]_21 chrXVI:860135-860656 2.9e-11 75_[+2]_4 chrX:531599-531699 2.9e-11 14_[+2]_65 chrXVI:571983-572724 2.9e-11 7_[+2]_72 chrVII:738854-739483 9.8e-11 48_[+2]_31 chrXIII:290560-291134 9.8e-11 46_[+2]_33 chrVII:401369-401783 9.8e-11 8_[-2]_71 chrIV:667769-668270 9.8e-11 45_[-2]_34 chrVII:541599-542165 9.8e-11 60_[+2]_19 chrIX:197329-197966 9.8e-11 37_[+2]_42 chrV:551034-551594 9.8e-11 28_[-2]_51 chrV:442979-443508 9.8e-11 16_[-2]_63 chrII:644954-645447 9.8e-11 59_[+2]_20 chrXVI:880006-880576 9.8e-11 62_[-2]_17 chrV:176862-177397 9.8e-11 62_[+2]_17 chrVII:328365-328978 9.8e-11 4_[+2]_75 chrXV:854016-854451 1.1e-10 11_[-2]_68 chrV:311757-312301 1.1e-10 51_[-2]_28 chrXII:214711-215169 1.1e-10 [-2]_79 chrX:414723-414823 4.9e-10 42_[+2]_37 chrIV:1201516-1202056 4.9e-10 57_[+2]_22 chrXIII:480399-480898 4.9e-10 30_[-2]_49 chrVI:226509-226940 4.9e-10 21_[-2]_58 chrVII:876150-876747 4.9e-10 39_[+2]_40 chrXI:202821-203310 4.9e-10 27_[+2]_52 chrVIII:388666-389228 8.4e-10 3_[-2]_76 chrXV:980469-981088 8.4e-10 30_[+2]_49 chrXIV:546946-547412 8.4e-10 38_[+2]_41 chrXII:92311-92877 8.4e-10 77_[+2]_2 chrIV:488476-489106 2.5e-09 63_[-2]_16 chrII:326575-327111 2.5e-09 6_[-2]_73 chrXI:578758-579347 2.8e-09 29_[+2]_50 chrXV:438436-438945 2.8e-09 69_[+2]_10 chrXII:875181-875663 2.8e-09 70_[+2]_9 chrXIII:768131-768674 3.6e-09 24_[-2]_55 chrXIII:320965-321336 3.6e-09 54_[-2]_25 chrVII:774121-774630 3.6e-09 67_[+2]_12 chrXII:656674-657196 3.6e-09 56_[-2]_23 chrIV:410153-410703 3.6e-09 44_[+2]_35 chrVII:828458-829021 4e-09 41_[-2]_38 chrX:374188-374288 4e-09 61_[-2]_18 chrXI:162252-162773 4e-09 32_[-2]_47 chrII:350590-351123 4e-09 63_[+2]_16 chrVII:405265-405790 4e-09 35_[+2]_44 chrV:250093-250564 4e-09 50_[+2]_29 chrIV:644945-645441 4e-09 17_[-2]_62 chrXI:46495-47018 4.4e-09 36_[-2]_43 chrVII:544348-544913 6.1e-09 4_[-2]_75 chrXIII:463298-463891 6.1e-09 52_[+2]_27 chrXII:426894-427465 6.1e-09 45_[+2]_34 chrVIII:85133-85569 6.8e-09 4_[-2]_75 chrXII:687654-688177 6.8e-09 1_[-2]_78 chrXIII:372220-372749 6.8e-09 18_[-2]_61 chrIX:174805-175425 1.8e-08 9_[+2]_70 chrII:266180-266666 1.8e-08 48_[+2]_31 chrIV:434007-434570 1.8e-08 33_[-2]_46 chrIX:325522-326084 1.8e-08 38_[+2]_41 chrXIII:807914-808562 2.6e-08 65_[-2]_14 chrVI:157663-158248 2.9e-08 18_[-2]_61 chrXVI:622302-622853 2.9e-08 20_[-2]_59 chrXIII:352083-352619 2.9e-08 40_[+2]_39 chrIV:946124-946614 3.1e-08 52_[+2]_27 chrXIII:837695-838231 3.1e-08 74_[+2]_5 chrVI:210417-210897 3.1e-08 19_[-2]_60 chrX:354005-354105 3.1e-08 78_[+2]_1 chrXI:74364-74944 1.1e-07 64_[+2]_15 chrVII:730929-731445 1.1e-07 44_[+2]_35 chrXIII:572652-573178 1.1e-07 25_[-2]_54 chrX:422696-422796 1.1e-07 49_[+2]_30 chrXV:487212-487728 1.1e-07 63_[+2]_16 chrXII:975729-976266 1.1e-07 43_[-2]_36 chrVIII:466743-467271 1.8e-07 75_[+2]_4 chrV:492151-492592 2.6e-07 38_[-2]_41 chrXI:313169-313685 2.8e-07 31_[-2]_48 chrXIII:362857-363304 2.8e-07 76_[+2]_3 chrVII:287056-287713 2.8e-07 23_[-2]_56 chrVII:319579-320146 2.8e-07 11_[+2]_68 chrXVI:55837-56516 2.8e-07 50_[-2]_29 chrVII:110412-110931 2.8e-07 11_[-2]_68 chrXIV:725882-726419 1e-06 38_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTCMBSGGTTCGAYYCCSVK width=21 seqs=80 chrVI:180683-181264 ( 59) GGCCCCCGGTTCGATTCCGGG 1 chrXVI:860135-860656 ( 76) GGCCCCCGGTTCGATTCCGGG 1 chrX:531599-531699 ( 15) GGCCCCCGGTTCGATTCCGGG 1 chrXVI:571983-572724 ( 8) GGCCCCCGGTTCGATTCCGGG 1 chrVII:738854-739483 ( 49) GATCAGCGGTTCGATCCCGCT 1 chrXIII:290560-291134 ( 47) AGACCGGGGTTCGACTCCCCG 1 chrVII:401369-401783 ( 9) AGACCGGGGTTCGACTCCCCG 1 chrIV:667769-668270 ( 46) GATCAGCGGTTCGATCCCGCT 1 chrVII:541599-542165 ( 61) AGACCGGGGTTCGACTCCCCG 1 chrIX:197329-197966 ( 38) AGACCGGGGTTCGACTCCCCG 1 chrV:551034-551594 ( 29) GATCAGCGGTTCGATCCCGCT 1 chrV:442979-443508 ( 17) GATCAGCGGTTCGATCCCGCT 1 chrII:644954-645447 ( 60) AGACCGGGGTTCGACTCCCCG 1 chrXVI:880006-880576 ( 63) GATCAGCGGTTCGATCCCGCT 1 chrV:176862-177397 ( 63) AGACCGGGGTTCGACTCCCCG 1 chrVII:328365-328978 ( 5) AGACCGGGGTTCGACTCCCCG 1 chrXV:854016-854451 ( 12) GGTCATCGGTTCGATTCCGGT 1 chrV:311757-312301 ( 52) GGTCATCGGTTCGATTCCGGT 1 chrXII:214711-215169 ( 1) GGTCATCGGTTCGATTCCGGT 1 chrX:414723-414823 ( 43) GGTTAGGGGTTCGAGCCCCCT 1 chrIV:1201516-1202056 ( 58) GGTTAGGGGTTCGAGCCCCCT 1 chrXIII:480399-480898 ( 31) GGTTAGGGGTTCGAGCCCCCT 1 chrVI:226509-226940 ( 22) GGTTAGGGGTTCGAGCCCCCT 1 chrVII:876150-876747 ( 40) GGTTAGGGGTTCGAGCCCCCT 1 chrXI:202821-203310 ( 28) GGTTAGGGGTTCGAGCCCCCT 1 chrVIII:388666-389228 ( 4) GGCCCTGGGTTCAATTCCCAG 1 chrXV:980469-981088 ( 31) GGCCCTGGGTTCAATTCCCAG 1 chrXIV:546946-547412 ( 39) GGCCCTGGGTTCAATTCCCAG 1 chrXII:92311-92877 ( 78) GGCCCTGGGTTCAATTCCCAG 1 chrIV:488476-489106 ( 64) GATCCCGAGTTCGAACCTCGG 1 chrII:326575-327111 ( 7) GATCCCGAGTTCGAACCTCGG 1 chrXI:578758-579347 ( 30) TGTCAGGGGTTCGAGCCCCCT 1 chrXV:438436-438945 ( 70) TGTCAGGGGTTCGAGCCCCCT 1 chrXII:875181-875663 ( 71) TGTCAGGGGTTCGAGCCCCCT 1 chrXIII:768131-768674 ( 25) GGTCTCCGGTTCGATTCCGGA 1 chrXIII:320965-321336 ( 55) GGTCTCCGGTTCGATTCCGGA 1 chrVII:774121-774630 ( 68) GGTCTCCGGTTCGATTCCGGA 1 chrXII:656674-657196 ( 57) GGTCTCCGGTTCGATTCCGGA 1 chrIV:410153-410703 ( 45) GGTCTCCGGTTCGATTCCGGA 1 chrVII:828458-829021 ( 42) GATTATGGGTTCGACCCCCAT 1 chrX:374188-374288 ( 62) GATTATGGGTTCGACCCCCAT 1 chrXI:162252-162773 ( 33) GATTATGGGTTCGACCCCCAT 1 chrII:350590-351123 ( 64) CAACCCCGGTTCGAATCCGGG 1 chrVII:405265-405790 ( 36) GATTATGGGTTCGACCCCCAT 1 chrV:250093-250564 ( 51) CAACCCCGGTTCGAATCCGGG 1 chrIV:644945-645441 ( 18) CAACCCCGGTTCGAATCCGGG 1 chrXI:46495-47018 ( 37) GATCGTGGGTTCAATTCCCAC 1 chrVII:544348-544913 ( 5) AGATCGGGGTTCAATTCCCCG 1 chrXIII:463298-463891 ( 53) AGATCGGGGTTCAATTCCCCG 1 chrXII:426894-427465 ( 46) AGATCGGGGTTCAATTCCCCG 1 chrVIII:85133-85569 ( 5) CGTCCCCAGTTCGATCCTGGG 1 chrXII:687654-688177 ( 2) CGTCCCCAGTTCGATCCTGGG 1 chrXIII:372220-372749 ( 19) CGTCCCCAGTTCGATCCTGGG 1 chrIX:174805-175425 ( 10) GATCATCGGTTCAAATCCGAT 1 chrII:266180-266666 ( 49) GATCATCGGTTCAAATCCGAT 1 chrIV:434007-434570 ( 34) GATCATCGGTTCAAATCCGAT 1 chrIX:325522-326084 ( 39) GATCATCGGTTCAAATCCGAT 1 chrXIII:807914-808562 ( 66) CAACCCCAGTTCGAATCCGGG 1 chrVI:157663-158248 ( 19) GGTCCTGTGTTCGATCCACAG 1 chrXVI:622302-622853 ( 21) GGTCCTGTGTTCGATCCACAG 1 chrXIII:352083-352619 ( 41) GGTCCTGTGTTCGATCCACAG 1 chrIV:946124-946614 ( 53) GATCGGGCGTTCGACTCGCCC 1 chrXIII:837695-838231 ( 75) GATCGGGCGTTCGACTCGCCC 1 chrVI:210417-210897 ( 20) GATCGGGCGTTCGACTCGCCC 1 chrX:354005-354105 ( 79) GATCGGGCGTTCGACTCGCCC 1 chrXI:74364-74944 ( 65) GATCGTGAGTTCAACCCTCAC 1 chrVII:730929-731445 ( 45) GATCGTGAGTTCAACCCTCAC 1 chrXIII:572652-573178 ( 26) GGTCGAGAGTTCGAACCTCCC 1 chrX:422696-422796 ( 50) GGTCGAGAGTTCGAACCTCCC 1 chrXV:487212-487728 ( 64) GATCGTGAGTTCAACCCTCAC 1 chrXII:975729-976266 ( 44) GATCGTGAGTTCAACCCTCAC 1 chrVIII:466743-467271 ( 76) GGTCGCTAGTTCAATTCTGGC 1 chrV:492151-492592 ( 39) GATTCCAGGTTCAAGTCCTGG 1 chrXI:313169-313685 ( 32) AAACCCTGGTTCGATTCTAGG 1 chrXIII:362857-363304 ( 77) AAACCCTGGTTCGATTCTAGG 1 chrVII:287056-287713 ( 24) GGTTGCAGGTTCAATTCCTGT 1 chrVII:319579-320146 ( 12) AAACCCTGGTTCGATTCTAGG 1 chrXVI:55837-56516 ( 51) GGTTGCAGGTTCAATTCCTGT 1 chrVII:110412-110931 ( 12) AAACCCTGGTTCGATTCTAGG 1 chrXIV:725882-726419 ( 39) GATGCGAGGTTCGAACTCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.0646 E= 7.3e-257 -83 -111 189 -305 45 -1297 161 -1297 -47 -92 -1297 112 -1297 206 -392 -64 1 125 -11 -231 -363 78 94 -11 -264 89 151 -231 -94 -192 199 -305 -1297 -1297 240 -1297 -1297 -1297 -1297 168 -1297 -1297 -1297 168 -1297 240 -1297 -1297 -31 -1297 199 -1297 168 -1297 -1297 -1297 -94 33 -60 61 -1297 113 -1297 92 -1297 239 -1297 -463 -305 191 -192 -64 -264 151 99 -305 -31 104 94 -1297 -231 -33 125 12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 80 E= 7.3e-257 0.175000 0.087500 0.700000 0.037500 0.425000 0.000000 0.575000 0.000000 0.225000 0.100000 0.000000 0.675000 0.000000 0.787500 0.012500 0.200000 0.312500 0.450000 0.175000 0.062500 0.025000 0.325000 0.362500 0.287500 0.050000 0.350000 0.537500 0.062500 0.162500 0.050000 0.750000 0.037500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.162500 0.237500 0.125000 0.475000 0.000000 0.412500 0.000000 0.587500 0.000000 0.987500 0.000000 0.012500 0.037500 0.712500 0.050000 0.200000 0.050000 0.537500 0.375000 0.037500 0.250000 0.387500 0.362500 0.000000 0.062500 0.150000 0.450000 0.337500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-2 regular expression -------------------------------------------------------------------------------- G[GA][TA][CT][CA][GCT][GC]GGTTC[GA]A[TC][TC]C[CT][CG][CGA][GT] -------------------------------------------------------------------------------- Time 662.85 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGAMAASSKSMYRTKMTRRCCRTTAMACT MEME-3 width = 30 sites = 22 llr = 535 E-value = 4.8e-081 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGAMAASSKSMYRTKMTRRCCRTTAMACT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::19486::1:5:4:14:55::5::a58:1 pos.-specific C 171:52:54:445::16::199:1::41a: probability G 8:8:::356551:6:3::531:5::::1:: matrix T 13:1::1::32:5:a5:a:::1:9a:1::9 bits 2.4 * 2.2 * 1.9 * * 1.7 * ** ** * Relative 1.4 * ** * * ** ** * Entropy 1.2 **** ** *** ** ****** ** (35.1 bits) 1.0 ****** ** *** *** ****** *** 0.7 ****** ******** ********** *** 0.5 *************** ************** 0.2 ****************************** 0.0 ------------------------------ Multilevel GCGACAACGGGACGTTCTAACCGTTAAACT consensus T ACGGCTCCTA GA GG A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAMAASSKSMYRTKMTRRCCRTTAMACT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:531411-531798 - 64 3.08e-15 CTGGCAC GCGACAAGCGCCCATTCTGACCATTAAACT ATCACGGAAG chrVII:544348-544913 + 31 3.08e-15 GATCTGGCAC GCGACAAGCGCCCATTCTGACCATTAAACT ATCACGGAAG chrX:374188-374288 + 6 3.08e-15 GGCAC GCGACAAGCGCCCATTCTGACCATTAAACT ATCACGGAAG chrXIII:463298-463891 - 18 3.08e-15 GATCTGGCAC GCGACAAGCGCCCATTCTGACCATTAAACT ATCACGGACA chrIV:568666-569284 - 47 3.08e-15 GATCTGGCAC GCGACAAGCGCCCATTCTGACCATTAAACT ATCACGGAAG chrXII:426894-427465 - 11 3.08e-15 GATCTGGCAC GCGACAAGCGCCCATTCTGACCATTAAACT ATCACGGATA chrIX:324133-324628 + 7 3.08e-15 TGGCAC GCGACAAGCGCCCATTCTGACCATTAAACT ATCACGGAAT chrIX:370163-370648 - 70 3.53e-13 G GTGAAAGCGTGATGTGATAGCCGTTACACT ATATCGGATT chrXIII:290560-291134 - 12 3.53e-13 GGTCTCCACG GTGAAAGCGTGATGTGATAGCCGTTACACT ATATCGGATT chrVII:401369-401783 + 35 3.53e-13 GGTCTCCACG GTGAAAGCGTGATGTGATAGCCGTTACACT ATATCGGAAA chrVII:541599-542165 - 26 3.53e-13 GGTCTCCACG GTGAAAGCGTGATGTGATAGCCGTTACACT ATATCGGATG chrII:644954-645447 - 25 3.53e-13 GGTCTCCACG GTGAAAGCGTGATGTGATAGCCGTTACACT ATATCGGATA chrV:176862-177397 - 28 3.53e-13 GGTCTCCACG GTGAAAGCGTGATGTGATAGCCGTTACACT ATATCGGATC chrIX:197329-197966 - 3 1.94e-12 GGTCTCCACG GTGAGAACGTGATGTGATAGCCGTTACACT AC chrXI:313169-313685 + 58 1.33e-10 GGTTTCATCG GCCACAACGATGTGTACTAACCACTATACT AAGATGGCAA chrXIII:362857-363304 - 42 1.33e-10 GGTTTCATCG GCCACAACGATGTGTACTAACCACTATACT AAGATGGCAA chrVII:110412-110931 + 38 1.33e-10 GGTTTCATCG GCCACAACGATGTGTACTAACCACTATACT AAGATGGCAG chrXIV:6471-7210 + 44 2.87e-10 CTTACTACTA CCATCCACCGCCCATCATAACCGTTACCCT CCAATTACCC chrXI:307965-308449 + 2 4.68e-10 A TCGAACTGGGGACGTTCTGCGTGTTAAGCA GATGCCATAA chrV:438417-438999 - 71 4.68e-10 . TCGAACTGGGGACGTTCTGCGTGTTAAGCA GATGCCATAA chrXV:663494-664248 + 6 4.68e-10 CAGGA TCGAACTGGGGACGTTCTGCGTGTTAAGCA GATGCCATAA chrX:745198-745298 - 57 1.58e-09 CTTACTACTA CCATCCACCGTCCACCATAACCGTTACCCT CCAATTACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAMAASSKSMYRTKMTRRCCRTTAMACT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:531411-531798 3.1e-15 63_[-3]_7 chrVII:544348-544913 3.1e-15 30_[+3]_40 chrX:374188-374288 3.1e-15 5_[+3]_65 chrXIII:463298-463891 3.1e-15 17_[-3]_53 chrIV:568666-569284 3.1e-15 46_[-3]_24 chrXII:426894-427465 3.1e-15 10_[-3]_60 chrIX:324133-324628 3.1e-15 6_[+3]_64 chrIX:370163-370648 3.5e-13 69_[-3]_1 chrXIII:290560-291134 3.5e-13 11_[-3]_59 chrVII:401369-401783 3.5e-13 34_[+3]_36 chrVII:541599-542165 3.5e-13 25_[-3]_45 chrII:644954-645447 3.5e-13 24_[-3]_46 chrV:176862-177397 3.5e-13 27_[-3]_43 chrIX:197329-197966 1.9e-12 2_[-3]_68 chrXI:313169-313685 1.3e-10 57_[+3]_13 chrXIII:362857-363304 1.3e-10 41_[-3]_29 chrVII:110412-110931 1.3e-10 37_[+3]_33 chrXIV:6471-7210 2.9e-10 43_[+3]_27 chrXI:307965-308449 4.7e-10 1_[+3]_69 chrV:438417-438999 4.7e-10 70_[-3] chrXV:663494-664248 4.7e-10 5_[+3]_65 chrX:745198-745298 1.6e-09 56_[-3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAMAASSKSMYRTKMTRRCCRTTAMACT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGAMAASSKSMYRTKMTRRCCRTTAMACT width=30 seqs=22 chrVII:531411-531798 ( 64) GCGACAAGCGCCCATTCTGACCATTAAACT 1 chrVII:544348-544913 ( 31) GCGACAAGCGCCCATTCTGACCATTAAACT 1 chrX:374188-374288 ( 6) GCGACAAGCGCCCATTCTGACCATTAAACT 1 chrXIII:463298-463891 ( 18) GCGACAAGCGCCCATTCTGACCATTAAACT 1 chrIV:568666-569284 ( 47) GCGACAAGCGCCCATTCTGACCATTAAACT 1 chrXII:426894-427465 ( 11) GCGACAAGCGCCCATTCTGACCATTAAACT 1 chrIX:324133-324628 ( 7) GCGACAAGCGCCCATTCTGACCATTAAACT 1 chrIX:370163-370648 ( 70) GTGAAAGCGTGATGTGATAGCCGTTACACT 1 chrXIII:290560-291134 ( 12) GTGAAAGCGTGATGTGATAGCCGTTACACT 1 chrVII:401369-401783 ( 35) GTGAAAGCGTGATGTGATAGCCGTTACACT 1 chrVII:541599-542165 ( 26) GTGAAAGCGTGATGTGATAGCCGTTACACT 1 chrII:644954-645447 ( 25) GTGAAAGCGTGATGTGATAGCCGTTACACT 1 chrV:176862-177397 ( 28) GTGAAAGCGTGATGTGATAGCCGTTACACT 1 chrIX:197329-197966 ( 3) GTGAGAACGTGATGTGATAGCCGTTACACT 1 chrXI:313169-313685 ( 58) GCCACAACGATGTGTACTAACCACTATACT 1 chrXIII:362857-363304 ( 42) GCCACAACGATGTGTACTAACCACTATACT 1 chrVII:110412-110931 ( 38) GCCACAACGATGTGTACTAACCACTATACT 1 chrXIV:6471-7210 ( 44) CCATCCACCGCCCATCATAACCGTTACCCT 1 chrXI:307965-308449 ( 2) TCGAACTGGGGACGTTCTGCGTGTTAAGCA 1 chrV:438417-438999 ( 71) TCGAACTGGGGACGTTCTGCGTGTTAAGCA 1 chrXV:663494-664248 ( 6) TCGAACTGGGGACGTTCTGCGTGTTAAGCA 1 chrX:745198-745298 ( 57) CCATCCACCGTCCACCATAACCGTTACCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAMAASSKSMYRTKMTRRCCRTTAMACT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.4707 E= 4.8e-081 -1110 -106 203 -119 -1110 185 -1110 3 -177 -47 203 -1110 155 -1110 -1110 -177 40 153 -205 -1110 131 27 -1110 -1110 93 -1110 53 -119 -1110 153 127 -1110 -1110 111 164 -1110 -119 -1110 153 3 -1110 94 127 -77 55 111 -47 -1110 -1110 153 -1110 55 40 -1110 164 -1110 -1110 -205 -1110 162 -119 -106 75 55 40 164 -1110 -1110 -1110 -1110 -1110 168 81 -1110 127 -1110 81 -47 75 -1110 -1110 219 -47 -1110 -1110 219 -1110 -119 55 -1110 153 -1110 -1110 -47 -1110 147 -1110 -1110 -1110 168 168 -1110 -1110 -1110 55 111 -1110 -119 131 -106 -47 -1110 -1110 240 -1110 -1110 -119 -1110 -1110 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAMAASSKSMYRTKMTRRCCRTTAMACT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 22 E= 4.8e-081 0.000000 0.090909 0.772727 0.136364 0.000000 0.681818 0.000000 0.318182 0.090909 0.136364 0.772727 0.000000 0.909091 0.000000 0.000000 0.090909 0.409091 0.545455 0.045455 0.000000 0.772727 0.227273 0.000000 0.000000 0.590909 0.000000 0.272727 0.136364 0.000000 0.545455 0.454545 0.000000 0.000000 0.409091 0.590909 0.000000 0.136364 0.000000 0.545455 0.318182 0.000000 0.363636 0.454545 0.181818 0.454545 0.409091 0.136364 0.000000 0.000000 0.545455 0.000000 0.454545 0.409091 0.000000 0.590909 0.000000 0.000000 0.045455 0.000000 0.954545 0.136364 0.090909 0.318182 0.454545 0.409091 0.590909 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.545455 0.000000 0.454545 0.000000 0.545455 0.136364 0.318182 0.000000 0.000000 0.863636 0.136364 0.000000 0.000000 0.863636 0.000000 0.136364 0.454545 0.000000 0.545455 0.000000 0.000000 0.136364 0.000000 0.863636 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.454545 0.409091 0.000000 0.136364 0.772727 0.090909 0.136364 0.000000 0.000000 1.000000 0.000000 0.000000 0.136364 0.000000 0.000000 0.863636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAMAASSKSMYRTKMTRRCCRTTAMACT MEME-3 regular expression -------------------------------------------------------------------------------- G[CT]GA[CA][AC][AG][CG][GC][GT][GC][AC][CT][GA]T[TG][CA]T[AG][AG]CC[GA]TTA[AC]ACT -------------------------------------------------------------------------------- Time 964.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:326575-327111 2.22e-10 6_[-2(2.54e-09)]_19_[+1(5.67e-08)]_\ 28 chrVIII:139780-141147 3.23e-01 100 chrXV:79698-80168 3.99e-01 100 chrVII:95395-96108 3.04e-01 100 chrXI:202821-203310 1.01e-06 27_[+2(4.93e-10)]_52 chrI:151577-151895 1.81e-01 100 chrIV:1301634-1302533 9.37e-01 100 chrXVI:821621-822285 7.96e-01 100 chrXIII:549872-553223 3.94e-01 100 chrVII:437005-438343 4.62e-01 100 chrVII:328365-328978 6.78e-08 4_[+2(9.77e-11)]_75 chrXI:322431-322749 3.70e-01 100 chrIV:525050-525339 9.11e-01 100 chrIII:58721-59040 7.85e-01 100 chrXVI:404522-407809 8.52e-01 100 chrIV:980771-981297 8.69e-07 45_[+1(1.24e-10)]_29 chrXI:490702-491202 2.91e-03 65_[-1(5.32e-07)]_9 chrIX:324133-324628 1.22e-12 6_[+3(3.08e-15)]_64 chrXIV:442805-444843 7.45e-01 100 chrIV:802543-803035 2.04e-08 37_[+1(1.24e-07)]_37 chrXII:262617-263971 9.12e-01 100 chrIX:316103-317624 5.36e-01 100 chrII:226852-227373 1.22e-07 12_[-1(1.24e-10)]_62 chrXI:382158-382500 7.18e-02 100 chrXVI:172781-174110 9.88e-01 100 chrVII:345879-346662 4.65e-01 100 chrXV:759101-759539 6.61e-01 100 chrXII:4-284 3.95e-01 100 chrVII:794139-794600 8.02e-01 100 chrXV:866520-868135 9.37e-01 100 chrXII:1051907-1052613 4.77e-01 100 chrV:101827-102594 8.62e-01 100 chrXVI:571983-572724 6.06e-08 7_[+2(2.93e-11)]_72 chrII:413962-415256 7.56e-01 100 chrIV:538903-539276 6.49e-03 100 chrXV:709994-710563 3.68e-02 15_[+2(8.50e-05)]_64 chrIV:644945-645441 8.54e-13 17_[-2(3.98e-09)]_17_[+1(1.24e-07)]_\ 19 chrXIII:653573-653811 9.62e-01 100 chrVI:269311-270160 6.16e-01 100 chrXII:649526-651283 8.07e-01 100 chrI:71743-73702 3.12e-01 100 chrX:464619-464719 2.35e-01 100 chrVII:254102-254709 9.43e-01 100 chrVIII:381410-383370 3.80e-01 100 chrXII:805393-807177 4.26e-01 100 chrXIII:168565-169067 3.26e-03 28_[-1(4.30e-07)]_46 chrXIV:26950-27595 9.72e-01 100 chrXIV:602092-602543 1.58e-08 44_[-1(2.99e-12)]_30 chrVII:344232-344924 9.76e-01 100 chrXVI:743868-744589 2.12e-01 100 chrXII:1002276-1002692 9.35e-01 100 chrIV:1461482-1462086 1.90e-05 69_[+1(3.00e-09)]_5 chrXV:663494-664248 3.10e-13 5_[+3(4.68e-10)]_3_[+1(1.05e-10)]_\ 36 chrXIII:161916-162773 5.00e-01 100 chrVII:823258-823699 2.83e-07 53_[-1(1.05e-10)]_21 chrXI:513200-513699 3.05e-01 100 chrX:354005-354105 6.90e-08 18_[-1(4.30e-07)]_34_[+2(3.15e-08)]_\ 1 chrVI:210417-210897 7.95e-08 19_[-2(3.15e-08)]_34_[+1(4.30e-07)] chrXVI:280607-282951 7.79e-01 100 chrVI:101137-101602 5.19e-05 56_[-1(1.97e-08)]_18 chrXI:282844-284832 7.63e-02 100 chrXII:780684-781890 3.14e-02 100 chrXI:591156-591632 8.61e-01 100 chrXI:0-1065 6.41e-04 66_[-1(5.70e-07)]_8 chrV:176862-177397 8.33e-17 27_[-3(3.53e-13)]_5_[+2(9.77e-11)]_\ 17 chrIV:835763-836377 3.70e-01 100 chrVII:110412-110931 2.21e-11 11_[-2(2.81e-07)]_5_[+3(1.33e-10)]_\ 33 chrXIII:267664-268789 7.94e-01 100 chrXIII:887108-889091 9.32e-01 100 chrXII:975729-976266 8.17e-05 43_[-2(1.06e-07)]_36 chrXII:424119-424522 4.94e-01 100 chrVII:914895-915182 5.06e-01 100 chrXI:99707-100007 2.92e-01 100 chrII:60686-61284 2.41e-01 100 chrXII:930635-931439 1.75e-01 100 chrII:760918-761121 8.09e-01 100 chrV:250093-250564 8.54e-13 7_[-1(1.24e-07)]_17_[+2(3.98e-09)]_\ 29 chrXII:282457-283878 3.51e-01 100 chrIV:992601-993067 2.71e-05 47_[-1(1.30e-08)]_27 chrXII:39521-39699 6.32e-01 100 chrIII:82005-82164 2.36e-01 100 chrXVI:490447-491089 9.68e-01 100 chrVI:4461-5484 1.23e-01 100 chrXIV:576709-577466 5.12e-01 100 chrVII:748969-749401 5.18e-01 100 chrXII:257635-259455 2.72e-01 100 chrXVI:378612-379034 2.46e-01 100 chrXII:855951-857680 8.66e-01 100 chrXV:978666-979173 2.66e-02 100 chrVII:1011225-1011451 8.45e-01 100 chrVI:223783-224185 8.03e-01 100 chrX:745198-745298 2.20e-08 23_[-1(2.98e-06)]_7_[-3(1.58e-09)]_\ 14 chrXV:1091111-1091290 4.16e-01 100 chrIV:83311-83793 1.33e-05 45_[-1(1.30e-08)]_29 chrXV:161078-162076 1.22e-02 31_[-1(4.04e-05)]_43 chrVII:615248-615633 4.37e-01 100 chrXVI:279976-280242 9.18e-01 100 chrXII:426894-427465 2.41e-18 10_[-3(3.08e-15)]_5_[+2(6.14e-09)]_\ 34 chrXVI:810446-810848 1.41e-01 100 chrVIII:353182-353627 8.98e-01 100 chrV:441752-442683 9.18e-02 31_[-3(4.77e-05)]_39 chrXI:589890-590158 8.42e-01 100 chrXVI:579719-581071 9.37e-01 100 chrXII:950968-953562 4.27e-01 100 chrXII:214711-215169 3.12e-15 [-2(1.14e-10)]_18_[+1(3.21e-11)]_35 chrII:563236-563539 5.23e-02 100 chrVII:1004008-1004405 1.91e-03 59_[-1(2.98e-07)]_15 chrXVI:880006-880576 9.38e-07 62_[-2(9.77e-11)]_17 chrXII:964672-965148 8.92e-01 100 chrXV:83214-83415 2.74e-01 100 chrXII:1029284-1030227 4.16e-01 100 chrIV:1489055-1490373 5.79e-03 100 chrV:438417-438999 3.10e-13 41_[-1(1.05e-10)]_3_[-3(4.68e-10)] chrVI:167241-167657 2.49e-03 37_[-1(4.30e-07)]_37 chrIX:354875-355522 2.31e-01 100 chrXVI:901631-901979 2.54e-01 100 chrXV:594232-594676 3.22e-01 100 chrXII:897652-898312 8.43e-01 100 chrIV:1442259-1443312 1.46e-01 100 chrXV:487212-487728 5.77e-10 18_[-1(9.53e-10)]_19_[+2(1.06e-07)]_\ 16 chrIV:306621-307746 5.81e-01 100 chrXIII:484330-484521 3.84e-02 46_[+3(2.00e-05)]_24 chrVIII:105019-105580 5.55e-01 100 chrIV:416545-417224 8.36e-01 100 chrV:266263-268207 3.43e-01 100 chrVII:405265-405790 2.35e-05 35_[+2(3.98e-09)]_44 chrXV:1027791-1029491 5.26e-01 100 chrXIII:650776-652920 6.34e-01 100 chrXV:900029-901739 8.65e-01 100 chrX:422696-422796 1.17e-10 5_[-1(1.97e-08)]_18_[+2(1.06e-07)]_\ 30 chrVII:533834-535238 8.85e-01 100 chrII:644954-645447 8.33e-17 24_[-3(3.53e-13)]_5_[+2(9.77e-11)]_\ 20 chrXII:468747-468980 6.09e-03 41_[-1(1.50e-05)]_2_[-1(2.82e-06)]_\ 5 chrXII:84076-84484 3.34e-01 100 chrIV:410153-410703 2.43e-14 [-1(4.61e-12)]_18_[+2(3.56e-09)]_35 chrXIII:504652-505247 5.38e-01 100 chrXIV:302307-303669 1.55e-01 100 chrIV:1021399-1021949 8.69e-01 100 chrVII:412106-412620 2.83e-07 28_[+1(1.05e-10)]_46 chrXI:333777-334947 5.75e-01 100 chrXI:217510-218726 1.63e-02 57_[-2(2.85e-05)]_22 chrV:101069-101583 9.99e-01 100 chrXI:428853-429077 5.54e-01 100 chrII:347361-347841 1.46e-05 51_[-1(1.60e-08)]_23 chrX:349058-349158 3.66e-01 100 chrIV:568666-569284 2.98e-13 46_[-3(3.08e-15)]_24 chrVII:352305-352659 8.77e-01 100 chrX:440616-440716 6.01e-01 100 chrX:701803-701903 2.30e-03 49_[+3(1.79e-05)]_21 chrVII:878548-879045 1.03e-02 43_[+1(2.56e-05)]_31 chrXIII:807914-808562 1.95e-04 65_[-2(2.64e-08)]_14 chrII:611961-614364 8.17e-01 100 chrXIII:352083-352619 2.28e-04 40_[+2(2.88e-08)]_39 chrXII:950171-950364 5.69e-01 100 chrIV:578848-580801 2.73e-02 100 chrV:99852-100336 5.27e-01 100 chrI:182356-182804 8.44e-07 47_[+1(1.24e-10)]_27 chrVIII:488315-488627 7.06e-01 100 chrIV:118413-118902 9.73e-01 100 chrII:114140-114684 4.79e-01 100 chrVII:905510-905679 5.28e-01 100 chrXIII:162933-164314 5.54e-01 100 chrV:442979-443508 2.11e-15 16_[-2(9.77e-11)]_19_[+1(2.99e-12)]_\ 18 chrVII:84177-84668 1.93e-01 100 chrIV:1259557-1260059 8.88e-01 100 chrXII:234541-234845 4.34e-01 100 chrXII:921397-922591 7.76e-01 100 chrIV:411220-411662 1.03e-01 100 chrX:396598-396698 3.92e-05 5_[+1(1.30e-08)]_69 chrIV:437540-438208 4.78e-02 100 chrX:115607-115707 5.21e-01 100 chrXV:113571-114000 7.87e-07 66_[-1(1.69e-10)]_8 chrXI:231158-231629 7.49e-02 100 chrXIII:892867-895344 2.46e-01 100 chrVII:986837-987285 4.44e-01 100 chrXIV:493743-495646 2.48e-02 100 chrX:332944-333044 9.09e-01 100 chrII:45604-46601 4.54e-01 100 chrX:215043-215143 4.32e-01 100 chrV:435615-436032 7.56e-07 25_[+1(3.00e-09)]_49 chrXII:795569-797396 5.24e-01 100 chrXVI:822713-824287 2.38e-01 100 chrV:269199-270740 8.14e-01 100 chrIV:1524078-1525667 2.58e-03 35_[+1(1.33e-06)]_39 chrXVI:819018-819786 7.28e-01 100 chrXV:677937-679217 9.50e-01 100 chrX:651936-652036 7.13e-01 100 chrXV:81378-82675 1.43e-01 100 chrX:212946-213046 8.40e-01 100 chrIV:321609-322008 9.58e-01 100 chrIV:1354534-1356065 8.08e-01 100 chrIV:229424-230704 8.91e-01 100 chrXII:656674-657196 3.12e-05 56_[-2(3.56e-09)]_23 chrXI:431964-432365 8.99e-01 100 chrXVI:122677-124688 7.28e-01 100 chrVII:876150-876747 1.74e-07 39_[+2(4.93e-10)]_40 chrXIV:725882-726419 3.49e-03 38_[+2(1.05e-06)]_41 chrX:378153-378253 2.83e-07 55_[-1(1.05e-10)]_19 chrIV:158992-159519 9.65e-01 100 chrX:204355-204455 8.04e-01 100 chrXV:2-1028 4.92e-01 100 chrXIII:727219-727960 3.64e-01 100 chrII:591524-591785 3.59e-01 100 chrXIV:360531-360890 6.32e-01 100 chrII:556031-558547 3.77e-01 100 chrXI:426786-427626 6.23e-01 100 chrV:321907-323106 8.26e-01 100 chrX:120260-120360 5.07e-01 100 chrVII:255171-255676 4.08e-01 100 chrII:87953-88594 4.34e-01 100 chrIII:315626-316619 3.96e-01 100 chrXII:734541-734991 5.35e-01 100 chrII:44793-45399 9.56e-01 100 chrXII:92311-92877 7.88e-11 3_[-1(1.97e-08)]_48_[+2(8.44e-10)]_\ 2 chrXV:232035-232364 3.04e-01 100 chrXII:784094-784592 2.81e-08 60_[-1(8.95e-11)]_14 chrV:130871-131422 5.51e-07 31_[+1(2.76e-07)]_43 chrXVI:302535-304590 2.75e-01 100 chrII:167180-169684 6.88e-01 100 chrXV:228072-228596 1.14e-05 46_[-1(9.53e-10)]_28 chrXIII:463298-463891 2.41e-18 17_[-3(3.08e-15)]_5_[+2(6.14e-09)]_\ 27 chrX:542766-542866 8.01e-01 100 chrIV:358048-358458 9.97e-01 100 chrII:350590-351123 1.81e-12 20_[-1(2.76e-07)]_17_[+2(3.98e-09)]_\ 16 chrX:73165-73265 2.81e-01 100 chrXIII:632421-633785 9.63e-01 100 chrIV:488476-489106 7.36e-06 63_[-2(2.54e-09)]_16 chrXII:546065-547542 6.21e-02 75_[-2(5.80e-05)]_4 chrVI:161988-162479 2.71e-05 44_[-1(1.30e-08)]_30 chrXII:875181-875663 3.29e-12 3_[-1(8.11e-08)]_41_[+2(2.85e-09)]_\ 9 chrVII:205304-205831 1.14e-06 3_[-1(3.00e-09)]_71 chrXV:960216-960527 5.26e-01 100 chrVII:291495-292019 3.58e-01 100 chrXV:796999-797490 8.91e-01 100 chrXI:614172-614449 2.81e-01 100 chrV:430973-431599 5.14e-02 100 chrXII:1064012-1065374 1.92e-01 100 chrVII:73720-74145 1.12e-02 56_[-1(6.34e-06)]_18 chrIII:82379-82779 7.43e-01 100 chrIV:1236423-1237985 9.00e-01 100 chrXI:162252-162773 4.56e-09 32_[-2(3.98e-09)]_17_[+1(9.12e-07)]_\ 4 chrXI:307965-308449 3.10e-13 1_[+3(4.68e-10)]_3_[+1(1.05e-10)]_\ 40 chrX:197182-197282 1.52e-08 17_[+1(4.61e-12)]_57 chrIV:27-375 2.13e-01 100 chrXV:438436-438945 3.29e-12 2_[-1(8.11e-08)]_41_[+2(2.85e-09)]_\ 10 chrVI:137231-137911 3.95e-06 12_[+1(9.53e-10)]_62 chrXVI:718405-719406 4.47e-01 100 chrVII:857231-857641 5.38e-01 100 chrXV:520686-521132 1.26e-01 100 chrIV:1116846-1117083 7.91e-01 100 chrII:36160-36607 1.25e-03 64_[-1(1.47e-07)]_10 chrXI:258681-258989 1.27e-02 68_[+3(3.33e-05)]_2 chrIV:392552-392765 9.34e-01 100 chrIV:125302-125656 2.22e-01 100 chrXII:673274-674404 8.41e-01 100 chrVIII:62523-62937 4.31e-01 100 chrXVI:690179-690363 9.92e-01 100 chrIII:227727-228226 2.30e-06 15_[-1(2.30e-10)]_59 chrXI:108427-109123 2.20e-01 100 chrXII:924476-924856 1.64e-01 100 chrII:332277-333665 9.67e-01 100 chrIX:257314-258010 8.47e-01 100 chrV:298985-301190 1.62e-01 100 chrXVI:55837-56516 1.45e-03 50_[-2(2.81e-07)]_29 chrIII:177069-178798 7.37e-01 100 chrVII:364928-366695 7.90e-01 100 chrXVI:575183-575534 5.59e-01 100 chrXIII:372220-372749 1.39e-18 25_[+3(4.68e-10)]_3_[+1(1.05e-10)]_\ 16 chrXIV:241374-241787 4.15e-01 100 chrXVI:622302-622853 2.42e-05 20_[-2(2.88e-08)]_59 chrIX:99614-100062 2.71e-01 100 chrXII:569069-570900 3.39e-01 100 chrXIII:131560-132266 3.93e-03 7_[+1(9.12e-07)]_67 chrV:27933-29612 9.82e-01 100 chrXVI:109731-112115 8.70e-01 100 chrV:363691-364251 7.63e-01 100 chrVII:310472-312259 7.03e-01 100 chrXIII:731886-733510 6.32e-01 100 chrII:607301-607542 6.64e-01 100 chrV:461900-462083 3.50e-01 100 chrXIII:901356-901620 6.34e-01 100 chrII:544485-544836 2.83e-01 100 chrII:592332-593442 5.84e-01 100 chrVII:786961-787223 5.67e-01 100 chrXII:346321-346599 7.19e-01 100 chrVII:228484-228864 9.09e-01 100 chrVIII:145349-146465 6.51e-01 100 chrX:607800-607900 5.95e-01 100 chrI:229170-230195 5.81e-03 13_[+1(1.33e-06)]_61 chrIII:292618-293072 7.81e-01 100 chrVII:788296-788784 4.52e-01 100 chrVII:10129-10533 6.83e-01 100 chrX:415777-415877 4.21e-03 32_[+1(2.56e-05)]_42 chrIV:490598-492020 8.96e-01 100 chrVII:648772-649463 9.97e-01 100 chrXII:710388-710965 6.35e-01 100 chrIX:325522-326084 2.22e-04 38_[+2(1.83e-08)]_41 chrII:604071-607136 7.89e-01 100 chrVI:204766-205213 6.01e-10 31_[+1(4.61e-12)]_43 chrV:6151-6663 9.06e-01 100 chrXV:1015334-1015829 5.10e-01 100 chrX:651193-651293 6.14e-01 100 chrII:476859-477774 8.13e-01 100 chrII:392917-394660 1.42e-01 100 chrXII:365780-366861 6.36e-01 100 chrX:453377-453477 5.30e-01 100 chrXII:5463-5927 1.11e-01 100 chrX:374188-374288 1.59e-18 5_[+3(3.08e-15)]_26_[-2(3.98e-09)]_\ 18 chrXIII:195927-196415 5.19e-05 23_[+1(1.97e-08)]_51 chrX:170223-170323 6.39e-01 100 chrXII:1028175-1028625 7.66e-01 100 chrVII:561434-561943 5.66e-02 100 chrXVI:135475-135862 8.75e-01 100 chrIV:434007-434570 3.45e-11 33_[-2(1.83e-08)]_18_[+1(1.69e-10)]_\ 2 chrV:66931-69362 8.30e-02 100 chrXIII:572652-573178 1.17e-10 25_[-2(1.06e-07)]_18_[+1(1.97e-08)]_\ 10 chrXI:158171-159568 5.69e-01 100 chrII:81761-83009 8.92e-01 100 chrXI:83972-84452 1.99e-05 45_[-1(1.60e-08)]_29 chrXIV:6471-7210 1.91e-06 43_[+3(2.87e-10)]_27 chrIII:127499-127889 1.09e-05 71_[-1(9.53e-10)]_3 chrXI:665547-666798 2.33e-03 14_[+1(1.33e-06)]_60 chrIII:2-2024 6.33e-01 100 chrV:311757-312301 5.74e-07 51_[-2(1.14e-10)]_28 chrXVI:193174-194584 6.50e-01 100 chrVIII:74898-75926 9.72e-01 100 chrX:541291-541391 8.26e-01 100 chrXV:968080-968463 9.24e-02 100 chrXV:87413-88370 7.32e-01 100 chrXIV:217269-217626 8.20e-01 100 chrXIV:546946-547412 2.63e-07 38_[+2(8.44e-10)]_41 chrXIII:837695-838231 7.95e-08 14_[-1(4.30e-07)]_34_[+2(3.15e-08)]_\ 5 chrXI:112807-114334 6.87e-01 100 chrX:58926-59026 1.64e-06 22_[+1(1.69e-10)]_52 chrV:492151-492592 3.53e-04 38_[-2(2.63e-07)]_41 chrX:157409-157509 3.32e-01 100 chrXIII:378837-379622 7.16e-01 100 chrXV:850959-851209 3.89e-01 100 chrII:642868-643449 8.29e-01 100 chrXIV:374668-375082 5.18e-05 43_[-1(8.11e-08)]_31 chrXIII:253351-253578 7.13e-01 100 chrV:206805-207683 4.25e-01 100 chrIV:1256868-1257296 3.76e-05 21_[+1(6.54e-07)]_53 chrXII:1041110-1042157 7.36e-01 100 chrVII:319579-320146 6.83e-04 11_[+2(2.81e-07)]_68 chrXV:287593-288431 9.98e-01 100 chrXVI:641266-641587 9.69e-02 100 chrX:216193-216293 3.89e-01 100 chrXI:517225-517526 5.95e-01 100 chrXIV:61952-64811 7.16e-01 100 chrXV:854016-854451 3.12e-15 11_[-2(1.14e-10)]_18_[+1(3.21e-11)]_\ 24 chrVI:157663-158248 2.42e-05 18_[-2(2.88e-08)]_61 chrII:165056-165443 2.83e-01 100 chrVII:1000289-1000637 2.57e-01 100 chrXV:619102-624571 4.76e-01 100 chrV:522689-522973 1.22e-01 100 chrV:264637-265704 3.66e-01 100 chrIII:142241-143013 7.92e-01 100 chrXVI:699900-700704 9.77e-01 100 chrI:81880-82310 4.96e-01 100 chrXII:522037-523586 5.81e-01 100 chrVII:806129-808093 6.66e-01 100 chrIV:234266-234470 3.38e-01 100 chrV:551034-551594 2.11e-15 28_[-2(9.77e-11)]_19_[+1(2.99e-12)]_\ 6 chrXII:47497-49128 4.99e-01 100 chrIII:11067-11540 6.80e-01 100 chrXVI:794440-796077 9.71e-01 100 chrVII:555079-557405 8.54e-01 100 chrIX:183285-183728 4.29e-08 31_[+1(2.99e-12)]_43 chrXV:1070851-1071191 6.78e-01 100 chrXV:407674-408211 6.13e-01 100 chrIX:197329-197966 3.46e-15 2_[-3(1.94e-12)]_5_[+2(9.77e-11)]_\ 42 chrVI:32173-32939 3.70e-01 100 chrVII:541599-542165 8.33e-17 25_[-3(3.53e-13)]_5_[+2(9.77e-11)]_\ 19 chrXII:687654-688177 1.39e-18 8_[+3(4.68e-10)]_3_[+1(1.05e-10)]_\ 33 chrXIV:567877-568617 4.63e-01 100 chrX:424291-424391 1.16e-05 15_[+1(1.60e-08)]_59 chrXIV:585499-586537 7.07e-01 100 chrIV:1175585-1176087 9.83e-07 42_[-1(1.97e-08)]_32 chrXI:46495-47018 8.62e-10 36_[-2(4.44e-09)]_17_[+1(1.87e-07)] chrVII:856684-857006 3.14e-01 100 chrVII:121978-122563 7.56e-07 48_[-1(3.00e-09)]_26 chrXIV:560531-560997 5.59e-07 25_[+1(1.69e-10)]_49 chrII:405528-406218 3.96e-03 54_[-1(9.12e-07)]_20 chrXV:960893-962378 1.89e-01 100 chrIV:1450488-1451254 9.65e-01 100 chrXV:1003898-1004970 9.99e-01 100 chrIII:13972-16514 9.24e-01 100 chrVII:1083233-1083863 9.70e-01 100 chrIV:1062780-1063116 9.92e-01 100 chrII:266180-266666 3.45e-11 4_[-1(1.69e-10)]_18_[+2(1.83e-08)]_\ 31 chrVII:544348-544913 2.41e-18 4_[-2(6.14e-09)]_5_[+3(3.08e-15)]_\ 40 chrVII:531411-531798 4.80e-14 63_[-3(3.08e-15)]_7 chrXVI:731610-732322 6.22e-02 26_[-3(8.33e-05)]_44 chrV:78091-79471 5.78e-01 100 chrXI:578758-579347 1.13e-06 29_[+2(2.85e-09)]_23_[+2(4.92e-05)]_\ 6 chrVII:730929-731445 1.48e-05 44_[+2(1.06e-07)]_35 chrVII:828458-829021 2.53e-05 41_[-2(3.98e-09)]_38 chrIV:331474-333381 1.66e-01 100 chrIX:232698-233026 8.60e-01 100 chrVII:147896-149551 8.31e-01 100 chrXVI:555828-556240 8.63e-01 100 chrXV:571696-572171 5.52e-02 74_[-1(3.17e-05)] chrXV:281869-282463 2.71e-05 47_[-1(1.30e-08)]_27 chrIV:667769-668270 4.03e-07 45_[-2(9.77e-11)]_34 chrVII:287056-287713 1.45e-03 23_[-2(2.81e-07)]_56 chrXV:1025689-1026116 8.51e-01 100 chrXII:568595-568864 4.14e-01 100 chrVII:774121-774630 2.43e-14 23_[-1(4.61e-12)]_18_[+2(3.56e-09)]_\ 12 chrXVI:297782-298445 8.97e-01 100 chrV:13330-13602 6.06e-01 100 chrIX:98197-99452 8.75e-01 100 chrVII:919856-920300 7.60e-01 100 chrX:531599-531699 4.47e-07 14_[+2(2.93e-11)]_65 chrX:675842-675942 5.86e-01 100 chrVII:592534-592966 7.76e-01 100 chrVII:700383-701276 8.99e-01 100 chrXIII:923145-924374 6.23e-04 62_[+1(3.46e-07)]_12 chrXI:362206-362462 5.03e-01 100 chrXIII:861158-861446 6.83e-02 100 chrVII:401369-401783 8.33e-17 8_[-2(9.77e-11)]_5_[+3(3.53e-13)]_\ 36 chrXVI:775659-776091 9.24e-01 100 chrXII:1012093-1012419 3.46e-01 100 chrIV:1013683-1013974 3.52e-01 100 chrV:354688-355402 3.49e-01 100 chrXIII:296733-298933 4.13e-01 100 chrIV:218308-218716 7.76e-01 100 chrXIII:226862-227039 8.79e-01 100 chrXI:458326-458961 4.03e-01 100 chrVIII:451355-453005 7.74e-01 100 chrXI:379455-379908 2.83e-07 48_[-1(1.05e-10)]_26 chrXIII:362857-363304 2.21e-11 41_[-3(1.33e-10)]_5_[+2(2.81e-07)]_\ 3 chrXVI:121402-121643 6.58e-01 100 chrXVI:188554-188962 1.58e-01 100 chrVII:13-2065 8.70e-01 100 chrIII:238686-238891 1.17e-01 100 chrXII:592353-593157 5.16e-01 100 chrI:138900-139341 5.47e-01 100 chrVIII:555886-557203 8.51e-02 100 chrXVI:860135-860656 1.69e-12 33_[-1(1.30e-08)]_16_[+2(2.93e-11)]_\ 4 chrXIII:290560-291134 2.78e-17 11_[-3(3.53e-13)]_5_[+2(9.77e-11)]_\ 33 chrV:152131-153023 9.03e-01 100 chrXIV:764031-764285 4.60e-01 100 chrXV:514327-514675 1.81e-01 100 chrXIII:288370-290019 8.97e-01 100 chrX:690536-690636 1.29e-01 100 chrVIII:237054-238167 4.88e-01 100 chrIV:449425-450045 5.94e-01 100 chrXV:723341-724604 8.61e-02 72_[-1(9.29e-05)]_2 chrXIII:605695-606052 9.71e-01 100 chrVII:798615-799040 4.18e-01 100 chrIX:317807-318249 9.82e-01 100 chrVII:476015-477152 9.67e-01 100 chrXII:261399-261677 6.23e-01 100 chrXI:219591-220112 4.54e-01 100 chrXV:159265-160733 1.33e-01 100 chrVII:1060064-1060391 7.85e-01 100 chrII:372888-373438 3.08e-01 100 chrVI:226509-226940 3.80e-13 21_[-2(4.93e-10)]_18_[+1(3.00e-09)]_\ 14 chrI:180925-181484 3.47e-01 100 chrIV:785941-786181 9.30e-01 100 chrXIV:88919-89693 7.27e-01 100 chrIX:382166-382424 3.59e-01 100 chrXI:67735-68412 7.29e-01 100 chrXV:779669-780955 4.91e-01 100 chrVI:180683-181264 2.27e-07 58_[-2(2.93e-11)]_21 chrIV:1205463-1206427 5.63e-01 100 chrIX:254214-254565 1.83e-01 100 chrIX:370163-370648 1.20e-09 69_[-3(3.53e-13)]_1 chrIX:1-251 4.98e-01 100 chrVII:726360-728216 9.85e-01 100 chrVII:371175-371532 1.68e-01 100 chrXII:498322-499707 5.24e-01 100 chrVII:845288-845946 8.83e-01 100 chrIX:174805-175425 4.78e-05 9_[+2(1.83e-08)]_70 chrIV:1150641-1151220 1.39e-06 35_[+1(8.95e-11)]_39 chrXIII:320965-321336 3.08e-05 54_[-2(3.56e-09)]_25 chrXI:313169-313685 2.21e-11 31_[-2(2.81e-07)]_5_[+3(1.33e-10)]_\ 13 chrVIII:466743-467271 8.34e-08 32_[-1(2.98e-07)]_17_[+2(1.76e-07)]_\ 4 chrII:376631-378228 9.30e-01 100 chrXVI:627386-627663 2.50e-01 100 chrIX:24568-25267 4.99e-01 100 chrIV:341149-341677 4.18e-01 100 chrIII:137761-138984 2.81e-01 100 chrXI:74364-74944 5.77e-10 19_[-1(9.53e-10)]_19_[+2(1.06e-07)]_\ 15 chrIV:322195-323577 8.38e-01 100 chrXIII:872664-872949 2.48e-01 100 chrV:339775-342177 2.40e-01 100 chrXIV:434563-434885 6.82e-01 100 chrXVI:425124-425565 8.42e-01 100 chrVII:882077-884566 6.15e-02 100 chrXII:403888-404944 9.37e-01 100 chrIV:1359337-1361095 5.84e-01 100 chrXVI:377008-377373 1.00e+00 100 chrVIII:505375-506236 5.86e-02 100 chrVII:596901-597294 3.31e-01 100 chrXII:605138-605635 2.90e-08 70_[+1(1.09e-09)]_4 chrXV:167959-168518 4.19e-01 100 chrXVI:209779-210524 8.16e-01 100 chrIV:1352317-1352770 7.56e-07 19_[+1(3.00e-09)]_55 chrII:373597-375873 7.71e-01 100 chrV:117586-118316 8.43e-01 100 chrV:85108-86957 7.19e-01 100 chrX:523830-523930 8.69e-07 40_[+1(1.24e-10)]_34 chrXIII:123252-124741 6.91e-01 100 chrIV:1164909-1165297 2.81e-01 100 chrXII:374191-374718 9.97e-01 100 chrXIII:145864-147218 3.67e-01 100 chrX:233683-233783 4.93e-01 100 chrXV:925189-925460 3.91e-01 100 chrIV:519528-519906 3.50e-01 100 chrXIV:631686-632139 1.81e-03 29_[+1(6.54e-07)]_45 chrV:486998-487603 9.39e-01 100 chrVI:95467-95872 1.59e-01 100 chrIII:294594-295873 8.11e-01 100 chrX:139174-139274 5.82e-01 100 chrII:181300-181646 4.55e-01 100 chrIII:78381-78700 6.22e-01 100 chrVII:738854-739483 2.11e-15 3_[-1(2.99e-12)]_19_[+2(9.77e-11)]_\ 31 chrXV:976167-976680 6.05e-07 47_[-1(1.97e-08)]_27 chrXIII:433524-433800 7.37e-01 100 chrVIII:120777-121638 6.14e-01 100 chrVIII:296846-297257 2.22e-01 100 chrXV:882052-883004 7.10e-02 100 chrXI:618642-619268 7.07e-03 1_[+1(2.75e-05)]_73 chrXV:842370-842978 6.57e-02 100 chrVIII:103827-104839 1.11e-01 100 chrXIII:224017-224677 6.43e-01 100 chrIV:1278582-1279063 4.94e-01 100 chrVIII:132812-133340 1.22e-07 55_[+1(1.24e-10)]_19 chrXIV:500986-502884 1.07e-01 100 chrVIII:125882-127790 8.86e-01 100 chrVII:736179-736799 1.00e+00 100 chrVII:438534-440085 2.03e-01 100 chrXIII:480399-480898 3.80e-13 30_[-2(4.93e-10)]_18_[+1(3.00e-09)]_\ 5 chrXIV:174036-174629 3.93e-01 100 chrXIV:89885-90161 6.80e-01 100 chrXII:818482-819762 5.39e-01 100 chrVIII:85133-85569 1.39e-18 11_[+3(4.68e-10)]_3_[+1(1.05e-10)]_\ 30 chrIV:525662-527419 8.26e-01 100 chrIV:1075320-1075786 9.62e-07 3_[+3(6.76e-08)]_67 chrXI:109330-110152 8.77e-01 100 chrXVI:432859-434351 4.96e-01 100 chrIV:915564-916227 2.35e-01 100 chrVII:479180-482880 4.42e-02 100 chrXIII:472882-473206 3.18e-01 100 chrXV:987185-987897 5.54e-02 100 chrVI:63949-65427 9.92e-01 100 chrXI:517747-518112 9.78e-01 100 chrXVI:109238-109503 9.58e-01 100 chrV:396135-397939 1.22e-01 100 chrX:631092-631192 4.39e-01 100 chrV:61031-62178 5.17e-01 100 chrXV:80373-81167 6.13e-01 100 chrXIV:330510-331195 8.42e-01 100 chrIII:236460-236687 9.69e-01 100 chrV:33760-34025 9.48e-01 100 chrXV:980469-981088 1.56e-06 30_[+2(8.44e-10)]_49 chrIV:946124-946614 6.34e-05 52_[+2(3.15e-08)]_27 chrIII:65969-68645 6.24e-01 100 chrIV:591603-591985 1.50e-02 7_[-3(5.09e-05)]_63 chrIV:976265-976763 5.90e-01 100 chrXV:274466-275006 4.50e-02 100 chrXVI:653814-655013 4.75e-01 100 chrXII:489286-489582 9.98e-03 6_[-1(1.50e-05)]_2_[-1(2.82e-06)]_\ 40 chrVIII:388666-389228 7.88e-11 3_[-2(8.44e-10)]_48_[+1(1.97e-08)]_\ 2 chrXII:636432-640290 5.90e-01 100 chrII:680409-682207 9.11e-01 100 chrXIII:797920-798154 2.86e-01 100 chrVIII:517453-519040 3.37e-01 100 chrVIII:34403-36394 9.03e-04 27_[+1(7.00e-07)]_47 chrXV:109491-111288 9.15e-01 100 chrXII:448486-448997 8.42e-04 4_[+1(1.24e-07)]_70 chrII:159832-160043 4.95e-01 100 chrXIII:183768-184188 2.71e-05 14_[+1(1.30e-08)]_60 chrXV:353878-354320 1.62e-06 38_[+1(1.69e-10)]_36 chrXIV:499267-500802 8.27e-01 100 chrIX:131822-132120 2.33e-01 100 chrII:504505-504728 6.45e-01 100 chrXII:962828-963325 1.64e-05 3_[+1(1.60e-08)]_71 chrVIII:461925-462255 3.98e-03 15_[+2(1.37e-05)]_64 chrIV:1201516-1202056 3.80e-13 13_[-1(3.00e-09)]_18_[+2(4.93e-10)]_\ 22 chrXI:326084-327577 5.68e-01 100 chrX:414723-414823 1.74e-07 42_[+2(4.93e-10)]_37 chrXV:639175-639467 4.86e-01 100 chrM:58286-58452 9.65e-01 100 chrXVI:244023-244238 6.39e-01 100 chrXIII:768131-768674 2.43e-14 24_[-2(3.56e-09)]_18_[+1(4.61e-12)]_\ 11 chrVII:440476-443114 9.81e-01 100 chrIX:438319-439887 6.49e-01 100 chrV:510568-511554 8.47e-01 100 chrXV:216236-216677 3.87e-01 100 chrVII:695605-697054 2.38e-01 100 chrXIV:721078-723146 7.30e-01 100 chrXII:731887-732330 9.21e-07 31_[-1(2.67e-10)]_43 chrIX:231829-232337 9.88e-01 100 chrVII:227465-228297 7.73e-01 100 chrVII:783816-784877 6.99e-01 100 chrX:545440-545540 4.95e-01 100 chrXI:140705-142537 4.56e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************