******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YKL222C/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:4-1388 1.0000 100 chrI:81838-82353 1.0000 100 chrI:138725-139376 1.0000 100 chrI:142051-143663 1.0000 100 chrI:166016-166770 1.0000 100 chrI:180847-181790 1.0000 100 chrI:182354-183255 1.0000 100 chrI:229179-230195 1.0000 100 chrII:9314-9921 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chrXV:571414-572361 1.0000 100 chrXV:594089-594777 1.0000 100 chrXV:620769-622626 1.0000 100 chrXV:639179-639436 1.0000 100 chrXV:663380-664470 1.0000 100 chrXV:673439-674276 1.0000 100 chrXV:677798-679224 1.0000 100 chrXV:709982-710636 1.0000 100 chrXV:779682-780880 1.0000 100 chrXV:832518-832844 1.0000 100 chrXV:854014-854441 1.0000 100 chrXV:866533-868088 1.0000 100 chrXV:882060-882386 1.0000 100 chrXV:900113-901160 1.0000 100 chrXV:901420-901711 1.0000 100 chrXV:901998-902247 1.0000 100 chrXV:925194-925404 1.0000 100 chrXV:968121-968448 1.0000 100 chrXV:976148-976717 1.0000 100 chrXV:978824-979138 1.0000 100 chrXV:980451-981464 1.0000 100 chrXV:1003410-1005230 1.0000 100 chrXV:1025720-1026111 1.0000 100 chrXV:1027820-1029434 1.0000 100 chrXV:1091111-1091290 1.0000 100 chrXVI:55615-56518 1.0000 100 chrXVI:75460-76709 1.0000 100 chrXVI:135403-135865 1.0000 100 chrXVI:172737-174074 1.0000 100 chrXVI:188506-188942 1.0000 100 chrXVI:194152-194582 1.0000 100 chrXVI:209901-210622 1.0000 100 chrXVI:278950-280219 1.0000 100 chrXVI:280635-282820 1.0000 100 chrXVI:302499-303064 1.0000 100 chrXVI:338395-339395 1.0000 100 chrXVI:340509-340776 1.0000 100 chrXVI:377907-379049 1.0000 100 chrXVI:404529-405733 1.0000 100 chrXVI:406175-408186 1.0000 100 chrXVI:435641-436206 1.0000 100 chrXVI:520070-520525 1.0000 100 chrXVI:559881-560504 1.0000 100 chrXVI:571973-572802 1.0000 100 chrXVI:575129-575646 1.0000 100 chrXVI:575846-576001 1.0000 100 chrXVI:581698-582400 1.0000 100 chrXVI:622150-622862 1.0000 100 chrXVI:653765-654640 1.0000 100 chrXVI:689320-689825 1.0000 100 chrXVI:699807-700679 1.0000 100 chrXVI:718490-719456 1.0000 100 chrXVI:731669-732324 1.0000 100 chrXVI:743754-744818 1.0000 100 chrXVI:768954-769481 1.0000 100 chrXVI:775628-776060 1.0000 100 chrXVI:794467-795321 1.0000 100 chrXVI:810431-810915 1.0000 100 chrXVI:819203-819771 1.0000 100 chrXVI:821597-822112 1.0000 100 chrXVI:856746-857232 1.0000 100 chrXVI:860096-860649 1.0000 100 chrXVI:880069-880594 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YKL222C/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YKL222C/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YKL222C/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 579 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57900 N= 579 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.306 C 0.194 G 0.194 T 0.306 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YKL222C/background): A 0.317 C 0.183 G 0.183 T 0.317 ******************************************************************************** ******************************************************************************** MOTIF AGRTCVBSGGTTCGABYCCSV MEME-1 width = 21 sites = 83 llr = 1386 E-value = 1.9e-257 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGABYCCSV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6152:4:11::::2a1::::3 pos.-specific C 121184331:::a::259754 probability G 3741:2458a:::8:3::143 matrix T :::72:31::aa:::45121: bits 2.5 * 2.2 * * 2.0 * * * 1.7 **** * * Relative 1.5 * ****** * Entropy 1.2 * ******* ** (24.1 bits) 1.0 * * ******* **** 0.7 * * * ******* ***** 0.5 *************** ***** 0.2 *************** ***** 0.0 --------------------- Multilevel AGATCAGGGGTTCGATTCCCC consensus G G CTC A GC GG sequence GC C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGABYCCSV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631561-632147 - 51 1.17e-12 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCCCC chrIII:123420-123835 - 9 1.17e-12 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCC chrXVI:880069-880594 - 24 1.79e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXIV:602190-602560 + 31 1.79e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXIV:569601-570180 - 36 1.79e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXII:734525-735139 + 64 1.79e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:550907-551710 - 36 1.79e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAA chrV:442924-443515 - 42 1.79e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrIX:210490-210963 + 33 1.79e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrIX:183211-183710 - 39 1.79e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAC chrIV:667768-668263 - 51 1.79e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXIII:480402-480946 - 6 2.50e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAG chrXI:202839-203255 + 45 2.50e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrX:414751-415313 + 27 2.50e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrVI:226515-226943 - 18 2.50e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrV:135175-135729 - 32 2.50e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrIX:299968-300523 - 42 2.50e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrXV:854014-854441 - 19 7.26e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAA chrXII:214595-215173 - 58 7.26e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAT chrXVI:768954-769481 - 49 1.64e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXV:438421-439014 + 42 1.64e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXII:875226-875698 + 30 1.64e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXI:578770-579312 + 40 1.64e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrX:531433-532275 + 65 4.63e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrXVI:856746-857232 + 6 9.07e-10 GGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrXII:656719-657194 - 37 9.07e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrVII:541632-542165 + 44 9.07e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:354657-355394 + 1 9.07e-10 . GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIX:370210-370656 + 76 9.07e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTAT chrIX:197223-198130 + 8 9.07e-10 CACCGTG GAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrIV:410153-410705 + 43 9.07e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrII:644971-645412 + 68 9.07e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrX:355100-355730 + 51 1.18e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:736165-736682 + 9 1.18e-09 TAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrVII:405316-405792 + 8 1.18e-09 AATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrII:405542-406245 + 77 1.18e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCG chrX:538328-538826 + 70 2.80e-09 CCTAAGGAGA AGACTGCGGGTTCGAGTCCCG TACGGAACGT chrV:250098-250557 + 51 4.99e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrIV:802530-803024 - 13 4.99e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTC chrIV:645021-645395 - 4 4.99e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTA chrXIII:168555-169124 + 65 5.59e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrX:353787-354861 + 29 5.59e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrVI:210451-210886 - 10 5.59e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGA chrVI:167259-167737 + 48 5.59e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrIV:946147-946618 + 39 5.59e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrXIV:546935-547420 + 40 6.24e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCCG chrXIII:195759-196430 - 33 6.24e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCCT chrVIII:388529-389236 - 70 6.24e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCCA chrXV:353868-354305 - 14 1.06e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrXIV:104587-105181 + 14 1.06e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrVIII:115813-116452 - 34 1.06e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrII:266133-266715 + 47 1.06e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrXIII:372142-372763 - 52 1.31e-08 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXI:379493-379976 + 40 1.31e-08 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrV:438477-439008 + 52 1.31e-08 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrXIII:808009-808569 - 16 4.16e-08 TCTGATCCGA ACAACCCCAGTTCGAATCCGG GTGGGACCTT chrXV:487190-487748 + 64 6.50e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXIV:632394-632913 + 40 6.50e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXII:975645-976309 - 65 6.50e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXI:74433-74954 + 25 6.50e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGC chrIII:127508-128013 + 50 6.50e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrIV:619644-620267 - 73 9.93e-08 AACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrX:541286-541818 + 48 1.17e-07 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrIX:336117-336646 - 27 1.17e-07 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXVI:559881-560504 - 65 1.61e-07 AGTTATCTGG AGGTCCTGTGTTCGATCCACA GAATTCGCAT chrXIV:374631-375241 + 44 1.61e-07 AGTCATCTGG AGGTCCTGTGTTCGATCCACA GAGTTCGCAA chrXI:83952-84637 - 23 1.61e-07 AATTACTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrII:347378-347973 - 37 1.61e-07 TATTACTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrII:9314-9921 - 75 1.61e-07 CTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrXII:167686-168266 - 27 4.22e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrVII:561388-561967 - 44 4.22e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrV:86336-86944 + 66 4.22e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrIV:1305338-1306119 + 5 4.22e-07 TTGG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrIV:437479-438119 + 75 4.22e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTT chrVII:661466-662071 + 73 4.52e-07 TGTAATGCAA AGGTCGTTAGTTCAATTCTGA CAGGTGG chrXVI:435641-436206 - 29 5.93e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrVII:706945-707356 - 17 5.93e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrXII:605160-605644 - 52 1.42e-06 ATGCTCGTGT AGCTCAGTGGTTAGAGCTTCG TGCTTATAGC chrIV:884132-884583 + 62 1.42e-06 ATGCTCGTGT AGCTCAGTGGTTAGAGCTTCG TGCTTATAGC chrXIII:362860-363326 + 63 1.51e-06 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrVIII:62518-63056 + 60 1.51e-06 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrIV:125330-125628 + 49 1.79e-06 AATTTGGTGC GGTGTATGGGTTCAAGTTCCC AAAAAAACAA chrXV:274487-274990 + 56 2.37e-06 TTGGGTTTTA CCTGCGCAGGTTCGAATCCTG TCTGTGACGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGABYCCSV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631561-632147 1.2e-12 50_[-1]_29 chrIII:123420-123835 1.2e-12 8_[-1]_71 chrXVI:880069-880594 1.8e-11 23_[-1]_56 chrXIV:602190-602560 1.8e-11 30_[+1]_49 chrXIV:569601-570180 1.8e-11 35_[-1]_44 chrXII:734525-735139 1.8e-11 63_[+1]_16 chrV:550907-551710 1.8e-11 35_[-1]_44 chrV:442924-443515 1.8e-11 41_[-1]_38 chrIX:210490-210963 1.8e-11 32_[+1]_47 chrIX:183211-183710 1.8e-11 38_[-1]_41 chrIV:667768-668263 1.8e-11 50_[-1]_29 chrXIII:480402-480946 2.5e-11 5_[-1]_74 chrXI:202839-203255 2.5e-11 44_[+1]_35 chrX:414751-415313 2.5e-11 26_[+1]_53 chrVI:226515-226943 2.5e-11 17_[-1]_62 chrV:135175-135729 2.5e-11 31_[-1]_48 chrIX:299968-300523 2.5e-11 41_[-1]_38 chrXV:854014-854441 7.3e-11 18_[-1]_61 chrXII:214595-215173 7.3e-11 57_[-1]_22 chrXVI:768954-769481 1.6e-10 48_[-1]_31 chrXV:438421-439014 1.6e-10 41_[+1]_38 chrXII:875226-875698 1.6e-10 29_[+1]_50 chrXI:578770-579312 1.6e-10 39_[+1]_40 chrX:531433-532275 4.6e-10 64_[+1]_15 chrXVI:856746-857232 9.1e-10 5_[+1]_74 chrXII:656719-657194 9.1e-10 36_[-1]_43 chrVII:541632-542165 9.1e-10 43_[+1]_36 chrV:354657-355394 9.1e-10 [+1]_79 chrIX:370210-370656 9.1e-10 75_[+1]_4 chrIX:197223-198130 9.1e-10 7_[+1]_72 chrIV:410153-410705 9.1e-10 42_[+1]_37 chrII:644971-645412 9.1e-10 67_[+1]_12 chrX:355100-355730 1.2e-09 50_[+1]_29 chrVII:736165-736682 1.2e-09 8_[+1]_71 chrVII:405316-405792 1.2e-09 7_[+1]_72 chrII:405542-406245 1.2e-09 76_[+1]_3 chrX:538328-538826 2.8e-09 69_[+1]_10 chrV:250098-250557 5e-09 50_[+1]_29 chrIV:802530-803024 5e-09 12_[-1]_67 chrIV:645021-645395 5e-09 3_[-1]_76 chrXIII:168555-169124 5.6e-09 64_[+1]_15 chrX:353787-354861 5.6e-09 28_[+1]_51 chrVI:210451-210886 5.6e-09 9_[-1]_70 chrVI:167259-167737 5.6e-09 47_[+1]_32 chrIV:946147-946618 5.6e-09 38_[+1]_41 chrXIV:546935-547420 6.2e-09 39_[+1]_40 chrXIII:195759-196430 6.2e-09 32_[-1]_47 chrVIII:388529-389236 6.2e-09 69_[-1]_10 chrXV:353868-354305 1.1e-08 13_[-1]_66 chrXIV:104587-105181 1.1e-08 13_[+1]_66 chrVIII:115813-116452 1.1e-08 33_[-1]_46 chrII:266133-266715 1.1e-08 46_[+1]_33 chrXIII:372142-372763 1.3e-08 51_[-1]_28 chrXI:379493-379976 1.3e-08 39_[+1]_40 chrV:438477-439008 1.3e-08 51_[+1]_28 chrXIII:808009-808569 4.2e-08 15_[-1]_64 chrXV:487190-487748 6.5e-08 63_[+1]_16 chrXIV:632394-632913 6.5e-08 39_[+1]_40 chrXII:975645-976309 6.5e-08 64_[-1]_15 chrXI:74433-74954 6.5e-08 24_[+1]_55 chrIII:127508-128013 6.5e-08 49_[+1]_30 chrIV:619644-620267 9.9e-08 72_[-1]_7 chrX:541286-541818 1.2e-07 47_[+1]_32 chrIX:336117-336646 1.2e-07 26_[-1]_53 chrXVI:559881-560504 1.6e-07 64_[-1]_15 chrXIV:374631-375241 1.6e-07 43_[+1]_36 chrXI:83952-84637 1.6e-07 22_[-1]_57 chrII:347378-347973 1.6e-07 36_[-1]_43 chrII:9314-9921 1.6e-07 74_[-1]_5 chrXII:167686-168266 4.2e-07 26_[-1]_53 chrVII:561388-561967 4.2e-07 43_[-1]_36 chrV:86336-86944 4.2e-07 65_[+1]_14 chrIV:1305338-1306119 4.2e-07 4_[+1]_75 chrIV:437479-438119 4.2e-07 74_[+1]_5 chrVII:661466-662071 4.5e-07 72_[+1]_7 chrXVI:435641-436206 5.9e-07 28_[-1]_51 chrVII:706945-707356 5.9e-07 16_[-1]_63 chrXII:605160-605644 1.4e-06 51_[-1]_28 chrIV:884132-884583 1.4e-06 61_[+1]_18 chrXIII:362860-363326 1.5e-06 62_[+1]_17 chrVIII:62518-63056 1.5e-06 59_[+1]_20 chrIV:125330-125628 1.8e-06 48_[+1]_31 chrXV:274487-274990 2.4e-06 55_[+1]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGABYCCSV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRTCVBSGGTTCGABYCCSV width=21 seqs=83 chrXIV:631561-632147 ( 51) AGGTCCCGGGTTCGAGTCCCG 1 chrIII:123420-123835 ( 9) AGGTCCCGGGTTCGAGTCCCG 1 chrXVI:880069-880594 ( 24) GGATCAGCGGTTCGATCCCGC 1 chrXIV:602190-602560 ( 31) GGATCAGCGGTTCGATCCCGC 1 chrXIV:569601-570180 ( 36) GGATCAGCGGTTCGATCCCGC 1 chrXII:734525-735139 ( 64) GGATCAGCGGTTCGATCCCGC 1 chrV:550907-551710 ( 36) GGATCAGCGGTTCGATCCCGC 1 chrV:442924-443515 ( 42) GGATCAGCGGTTCGATCCCGC 1 chrIX:210490-210963 ( 33) GGATCAGCGGTTCGATCCCGC 1 chrIX:183211-183710 ( 39) GGATCAGCGGTTCGATCCCGC 1 chrIV:667768-668263 ( 51) GGATCAGCGGTTCGATCCCGC 1 chrXIII:480402-480946 ( 6) AGGTTAGGGGTTCGAGCCCCC 1 chrXI:202839-203255 ( 45) AGGTTAGGGGTTCGAGCCCCC 1 chrX:414751-415313 ( 27) AGGTTAGGGGTTCGAGCCCCC 1 chrVI:226515-226943 ( 18) AGGTTAGGGGTTCGAGCCCCC 1 chrV:135175-135729 ( 32) AGGTTAGGGGTTCGAGCCCCC 1 chrIX:299968-300523 ( 42) AGGTTAGGGGTTCGAGCCCCC 1 chrXV:854014-854441 ( 19) AGGTCATCGGTTCGATTCCGG 1 chrXII:214595-215173 ( 58) AGGTCATCGGTTCGATTCCGG 1 chrXVI:768954-769481 ( 49) ATGTCAGGGGTTCGAGCCCCC 1 chrXV:438421-439014 ( 42) ATGTCAGGGGTTCGAGCCCCC 1 chrXII:875226-875698 ( 30) ATGTCAGGGGTTCGAGCCCCC 1 chrXI:578770-579312 ( 40) ATGTCAGGGGTTCGAGCCCCC 1 chrX:531433-532275 ( 65) GGGCCCCCGGTTCGATTCCGG 1 chrXVI:856746-857232 ( 6) AGGTCTCCGGTTCGATTCCGG 1 chrXII:656719-657194 ( 37) AGGTCTCCGGTTCGATTCCGG 1 chrVII:541632-542165 ( 44) GAGACCGGGGTTCGACTCCCC 1 chrV:354657-355394 ( 1) GAGACCGGGGTTCGACTCCCC 1 chrIX:370210-370656 ( 76) GAGACCGGGGTTCGACTCCCC 1 chrIX:197223-198130 ( 8) GAGACCGGGGTTCGACTCCCC 1 chrIV:410153-410705 ( 43) AGGTCTCCGGTTCGATTCCGG 1 chrII:644971-645412 ( 68) GAGACCGGGGTTCGACTCCCC 1 chrX:355100-355730 ( 51) AGATTATGGGTTCGACCCCCA 1 chrVII:736165-736682 ( 9) AGATTATGGGTTCGACCCCCA 1 chrVII:405316-405792 ( 8) AGATTATGGGTTCGACCCCCA 1 chrII:405542-406245 ( 77) AGATTATGGGTTCGACCCCCA 1 chrX:538328-538826 ( 70) AGACTGCGGGTTCGAGTCCCG 1 chrV:250098-250557 ( 51) ACAACCCCGGTTCGAATCCGG 1 chrIV:802530-803024 ( 13) ACAACCCCGGTTCGAATCCGG 1 chrIV:645021-645395 ( 4) ACAACCCCGGTTCGAATCCGG 1 chrXIII:168555-169124 ( 65) AGATCGGGCGTTCGACTCGCC 1 chrX:353787-354861 ( 29) AGATCGGGCGTTCGACTCGCC 1 chrVI:210451-210886 ( 10) AGATCGGGCGTTCGACTCGCC 1 chrVI:167259-167737 ( 48) AGATCGGGCGTTCGACTCGCC 1 chrIV:946147-946618 ( 39) AGATCGGGCGTTCGACTCGCC 1 chrXIV:546935-547420 ( 40) AGGCCCTGGGTTCAATTCCCA 1 chrXIII:195759-196430 ( 33) AGGCCCTGGGTTCAATTCCCA 1 chrVIII:388529-389236 ( 70) AGGCCCTGGGTTCAATTCCCA 1 chrXV:353868-354305 ( 14) AGATCATCGGTTCAAATCCGA 1 chrXIV:104587-105181 ( 14) AGATCATCGGTTCAAATCCGA 1 chrVIII:115813-116452 ( 34) AGATCATCGGTTCAAATCCGA 1 chrII:266133-266715 ( 47) AGATCATCGGTTCAAATCCGA 1 chrXIII:372142-372763 ( 52) ACGTCCCCAGTTCGATCCTGG 1 chrXI:379493-379976 ( 40) ACGTCCCCAGTTCGATCCTGG 1 chrV:438477-439008 ( 52) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:808009-808569 ( 16) ACAACCCCAGTTCGAATCCGG 1 chrXV:487190-487748 ( 64) AGATCGTGAGTTCAACCCTCA 1 chrXIV:632394-632913 ( 40) AGATCGTGAGTTCAACCCTCA 1 chrXII:975645-976309 ( 65) AGATCGTGAGTTCAACCCTCA 1 chrXI:74433-74954 ( 25) AGATCGTGAGTTCAACCCTCA 1 chrIII:127508-128013 ( 50) AGATCGTGAGTTCAACCCTCA 1 chrIV:619644-620267 ( 73) AGATTCCAGGTTCAAGTCCTG 1 chrX:541286-541818 ( 48) CAGATCGGGGTTCAATTCCCC 1 chrIX:336117-336646 ( 27) CAGATCGGGGTTCAATTCCCC 1 chrXVI:559881-560504 ( 65) AGGTCCTGTGTTCGATCCACA 1 chrXIV:374631-375241 ( 44) AGGTCCTGTGTTCGATCCACA 1 chrXI:83952-84637 ( 23) GGATGCGAGGTTCGAACTCGC 1 chrII:347378-347973 ( 37) GGATGCGAGGTTCGAACTCGC 1 chrII:9314-9921 ( 75) GGATGCGAGGTTCGAACTCGC 1 chrXII:167686-168266 ( 27) CCCGCGCAGGTTCGAGTCCTG 1 chrVII:561388-561967 ( 44) CCCGCGCAGGTTCGAGTCCTG 1 chrV:86336-86944 ( 66) CCCGCGCAGGTTCGAGTCCTG 1 chrIV:1305338-1306119 ( 5) CCCGCGCAGGTTCGAGTCCTG 1 chrIV:437479-438119 ( 75) CCCGCGCAGGTTCGAGTCCTG 1 chrVII:661466-662071 ( 73) AGGTCGTTAGTTCAATTCTGA 1 chrXVI:435641-436206 ( 29) TGGTCCTTAGTTCGATCCTGA 1 chrVII:706945-707356 ( 17) TGGTCCTTAGTTCGATCCTGA 1 chrXII:605160-605644 ( 52) AGCTCAGTGGTTAGAGCTTCG 1 chrIV:884132-884583 ( 62) AGCTCAGTGGTTAGAGCTTCG 1 chrXIII:362860-363326 ( 63) GAAACCCTGGTTCGATTCTAG 1 chrVIII:62518-63056 ( 60) GAAACCCTGGTTCGATTCTAG 1 chrIV:125330-125628 ( 49) GGTGTATGGGTTCAAGTTCCC 1 chrXV:274487-274990 ( 56) CCTGCGCAGGTTCGAATCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGABYCCSV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46320 bayes= 10.0989 E= 1.9e-257 98 -92 47 -372 -155 -22 191 -272 53 -112 125 -372 -102 -160 -112 114 -1302 210 -234 -81 28 98 25 -313 -1302 60 125 -13 -140 78 140 -191 -113 -160 208 -372 -1302 -1302 245 -1302 -1302 -1302 -1302 166 -1302 -1302 -1302 166 -372 242 -1302 -1302 -63 -1302 212 -1302 166 -1302 -1302 -1302 -113 33 54 19 -1302 140 -1302 71 -1302 234 -1302 -213 -372 201 -160 -81 -372 147 108 -191 -33 121 83 -1302 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGABYCCSV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 83 E= 1.9e-257 0.626506 0.096386 0.253012 0.024096 0.108434 0.156627 0.686747 0.048193 0.457831 0.084337 0.433735 0.024096 0.156627 0.060241 0.084337 0.698795 0.000000 0.783133 0.036145 0.180723 0.385542 0.361446 0.216867 0.036145 0.000000 0.277108 0.433735 0.289157 0.120482 0.313253 0.481928 0.084337 0.144578 0.060241 0.771084 0.024096 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.024096 0.975904 0.000000 0.000000 0.204819 0.000000 0.795181 0.000000 1.000000 0.000000 0.000000 0.000000 0.144578 0.228916 0.265060 0.361446 0.000000 0.481928 0.000000 0.518072 0.000000 0.927711 0.000000 0.072289 0.024096 0.734940 0.060241 0.180723 0.024096 0.506024 0.385542 0.084337 0.253012 0.421687 0.325301 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGABYCCSV MEME-1 regular expression -------------------------------------------------------------------------------- [AG]G[AG]TC[ACG][GTC][GC]GGTTC[GA]A[TGC][TC]CC[CG][CGA] -------------------------------------------------------------------------------- Time 329.22 secs. ******************************************************************************** ******************************************************************************** MOTIF DDSSCBYTAMCCACTRSGCCAHRNRVSC MEME-2 width = 28 sites = 83 llr = 1465 E-value = 2.4e-276 ******************************************************************************** -------------------------------------------------------------------------------- Motif DDSSCBYTAMCCACTRSGCCAHRNRVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3221111375:39::423::a54244:: pos.-specific C :143733115a5:9:23:a8:313135a probability G 3346121:1::2:::357::::43434: matrix T 33::14572::::1a1:::2:3122:1: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * ** * * * Relative 1.5 * ** **** * Entropy 1.2 * *** **** * (25.5 bits) 1.0 * * *** **** ** 0.7 *** ****** ***** ** 0.5 *** ******** ***** *** 0.2 * ********************* **** 0.0 ---------------------------- Multilevel AGCGCTTTAACCACTAGGCCAAGGGACC consensus GTGC CCATC A GCA T TACAGG sequence TA G C A C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYTAMCCACTRSGCCAHRNRVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrXII:656719-657194 + 73 5.49e-13 ATGCTAAGGG AGCGCGCTACCGACTACGCCACACGCCC chrXI:219631-220138 - 61 5.49e-13 ATGCTAAGGG AGCGCGCTACCGACTACGCCACACGCCC TATTTACTGT chrX:197134-197659 + 12 5.49e-13 ATGCTAAGGG AGCGCGCTACCGACTACGCCACACGCCC TAATATTATT chrXV:854014-854441 + 55 1.08e-12 TTGCAAGGGA AGCGCGCTACCAACTGCGCCATGTGCCC TGATGACTGT chrV:311754-312428 + 27 1.08e-12 TTGCAAGGGA AGCGCGCTACCAACTGCGCCATGTGCCC AGAATTTCTG chrXVI:689320-689825 - 43 3.11e-12 TTTCAAGTCT GTCGCCTTAACCACTCGGCCATAGTGCC CAAAATAATC chrXIII:258905-259604 + 8 3.11e-12 CTAATCT TTCGCCTTAACCACTCGGCCAAGTTGCC ATACTAACTT chrXII:167686-168266 + 72 3.11e-12 TTTCTAATCT TTCGCCTTAACCACTCGGCCAAGTTGCC A chrX:523852-524306 + 37 3.11e-12 TTTCTAATCT TTCGCCTTAACCACTCGGCCAAGTTGCC TTTAATCTCT chrVIII:132832-133370 + 29 3.11e-12 TTTCTAATCT TTCGCCTTAACCACTCGGCCAAGTTGCC ACTTATTATA chrV:86336-86944 - 14 3.11e-12 TTTCTAATCT TTCGCCTTAACCACTCGGCCAAGTTGCC ATAACTCATT chrIV:980785-981288 + 42 3.11e-12 TTTCTAATCT TTCGCCTTAACCACTCGGCCAAGTTGCC TCAATTTACA chrIV:437479-438119 - 23 3.11e-12 TTTCTAATCT TTCGCCTTAACCACTCGGCCAAGTTGCC TTACTAATGA chrXVI:880069-880594 + 61 6.78e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCAAGAGACC ATTATATTGT chrXIV:569601-570180 + 73 6.78e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCAAGAGACC chrXII:734525-735139 - 20 6.78e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCAAGAGACC AAACTTTGTT chrVII:738794-739470 - 40 6.78e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCAAGAGACC TATTTTTTTC chrV:550907-551710 + 73 6.78e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCAAGAGACC chrXV:353868-354305 + 50 9.81e-12 TTACTAGTGT GGCGCCTTACCAACTTGGCCATAGAAGC AGTAAACCGT chrXIV:560511-561019 + 23 9.81e-12 TTACTAGTGT GGCGCCTTACCAACTTGGCCATAGAAGC CCGTTATTAC chrVIII:115813-116452 + 70 9.81e-12 TTACTAGTGT GGCGCCTTACCAACTTGGCCATAGAAGC TCT chrIX:174750-175293 - 60 9.81e-12 TTACTAGTGT GGCGCCTTACCAACTTGGCCATAGAAGC TCGTACTTGT chrII:266133-266715 - 4 9.81e-12 TTACTAGTGT GGCGCCTTACCAACTTGGCCATAGAAGC AGT chrIII:227742-228194 - 24 6.25e-11 ATTCGAGTCT CTCGCCTTAACCACTCGGCCATAGTGCC ATTTCGATTT chrXII:731879-732338 - 32 7.29e-11 CCTAAATCTG ACGCCTTAAACCACTCGGCCAAACTCCC ATTGTATGTT chrX:617681-618168 - 45 7.29e-11 CCTAAATCTG ACGCCTTAAACCACTCGGCCAAACTCCC ATTGTTTGTT chrXVI:581698-582400 - 63 1.40e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCAACAAGGC TCTTTTGTTG chrXIII:480402-480946 + 42 1.40e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCAACAAGGC TACTTATTGT chrXI:202839-203255 - 2 1.40e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCAACAAGGC T chrVI:226515-226943 + 54 1.40e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCAACAAGGC ATTTTAATCT chrV:135175-135729 + 68 1.40e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCAACAAGGC TTTTT chrIV:1352308-1352758 + 28 1.40e-09 TTAAGAGTCA TACGCGCTACCGATTGCGCCAACAAGGC TATTTCGTTG chrXIII:420303-420993 + 36 1.77e-09 TGTTAAGCAG ATGCCATAACCGACTAGACCACGAAACC TGTTATTTGT chrXI:307985-308440 + 28 1.77e-09 TGTTAAGCAG ATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrVII:823236-823695 - 67 1.77e-09 AAGCAG ATGCCATAACCGACTAGACCACGAAACC ACTCTTATTG chrVII:412099-412627 + 27 1.77e-09 TGTTAAGCAG ATGCCATAACCGACTAGACCACGAAACC AGTTTTTTGA chrV:438477-439008 - 8 1.77e-09 TGTTAAGCAG ATGCCATAACCGACTAGACCACGAAACC TAATTTG chrIV:1095156-1095707 + 53 2.49e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTAAGTCCGC TAACATAAGA chrXIII:504381-505404 - 53 3.11e-09 CTTGAATCAG GCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCTGT chrXII:628153-628638 - 38 3.11e-09 CTTGAATCAG GCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrVII:857270-857650 + 54 3.11e-09 CTTGAATCAG GCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrVII:205311-205742 - 45 3.11e-09 CTTGAATCAG GCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXVI:810431-810915 - 53 3.86e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCATGGAGTC GCAAATAATG chrXV:487190-487748 - 20 3.86e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCATGGAGTC TAACTTTGTT chrXV:228070-228594 - 49 3.86e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCATGGAGTC TAATATTTTA chrVI:137174-137987 + 2 3.86e-09 C ACGCCTTAACCAACTTGGCCATGGAGTC AGTCACTTTT chrIII:127508-128013 - 6 3.86e-09 TAACAGTCGC ACGCCTTAACCAACTTGGCCATGGAGTC ATTTT chrXIII:352072-352467 - 61 4.77e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTAAATCCGC TTATATTCAT chrVIII:358290-358883 + 6 4.77e-09 AGTCT GGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrVIII:237690-238178 + 28 4.77e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrII:36163-36603 - 65 4.77e-09 TTCAGTCT GGCGCTCTCCCAACTGAGCTAAATCCGC TTACAACTAA chrXV:464209-464654 - 69 3.16e-08 AAGC GAGAATCATACCACTAGACCACACGCCC TTGTTAACTT chrXVI:860096-860649 - 57 3.44e-08 GATGGCAACG TTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrXIII:183736-184192 + 27 3.44e-08 GATGGCAACG TTGGATTTTACCACTAAACCACTTGCGC GATCTTTATT chrX:531433-532275 - 24 3.44e-08 GATGGCAACG TTGGATTTTACCACTAAACCACTTGCGC TCACTAATTG chrX:396312-397311 + 8 3.44e-08 GGCAACG TTGGATTTTACCACTAAACCACTTGCGC TTACTTTTGA chrIV:992598-993039 - 64 3.44e-08 ATGGCAACG TTGGATTTTACCACTAAACCACTTGCGC TCACAATTGT chrXVI:775628-776060 + 15 4.06e-08 ATTTGCAATC TGCTGCGCTACCACTGCGCCATACGAGC TTTTGAATTA chrXVI:435641-436206 + 64 4.06e-08 ATTTGCAATC TGCTGCGCTACCACTGCGCCATACGAGC TTTTGTTGT chrXV:976148-976717 - 39 4.06e-08 TTATGAGACT GACGCTCTTCCTACTGAGCTACTGAAGC GCACAAAATA chrX:374227-374962 + 6 4.06e-08 AAGTC AGACGCGTTGCCATTACGCCACGCGAGC TACTATTTGT chrX:355100-355730 - 9 4.06e-08 ATTAGAAGTC AGACGCGTTGCCATTACGCCACGCGAGC TACTGTTT chrVII:706945-707356 + 52 4.06e-08 ATTTGCAATC TGCTGCGCTACCACTGCGCCATACGAGC TTGATTTTCT chrIV:1175549-1176129 - 40 4.06e-08 TTATGAGACT GACGCTCTTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrIV:568486-569254 - 62 4.06e-08 ATTAGAAGTC AGACGCGTTGCCATTACGCCACGCGAGC TACTATTTGT chrII:405542-406245 - 35 4.06e-08 ATTAGAAGTC AGACGCGTTGCCATTACGCCACGCGAGC TACTATTTGT chrXIII:808009-808569 + 51 5.19e-08 ATCAGAACCG AAAGTGATAACCACTACACTATAGGACC TTTTTCTTCT chrV:250098-250557 - 9 5.19e-08 ATCAAAACCG AAAGTGATAACCACTACACTATAGGACC AGTACAAC chrIV:802530-803024 + 48 5.19e-08 ATCAAAACCG AAAGTGATAACCACTACACTATAGGACC GACAATTCAT chrIV:645021-645395 + 39 5.19e-08 ATCAAAACCG AAAGTGATAACCACTACACTATAGGACC GTAACAACTG chrIII:168137-168624 + 15 5.19e-08 ATCAAAACCG AAAGTGATAACCACTACACTATAGGACC AGGACTTCTT chrXV:110838-111267 + 4 5.62e-08 GGT GGGATGATAACCACTACACTAACCGCCC GGGTTAATTG chrXIV:95959-96650 + 31 5.62e-08 TTGGAAGGGT GGGATGATAACCACTACACTAACCGCCC ATGTGTTGGA chrII:350591-351084 - 40 1.29e-07 ATCAAAACCG AAAGTGATAACCACTACACTATAAAACC CTTTTATTGA chrII:9314-9921 - 16 1.38e-07 CTTAAGTCTG CCGCCTTAGACCACTCGGCCAACCCTCC ACGAATTTTC chrXVI:743754-744818 - 48 1.59e-07 ATTACAAGTG CAACGCTCTACCACTAAGCTAAGGAGGC TTTTACACTG chrVII:661466-662071 - 31 1.59e-07 ATTACAAGTG CAACGCTCTACCACTAAGCTAAGGAGGC AAATTTTTAC chrXV:594089-594777 + 15 2.22e-07 TTGGGAAGCA TAAATTCTAACCACTGAACCACTTGCGC GTTTCAATCA chrX:538328-538826 - 28 4.16e-07 CTTAGGAGGG AGACGCGTTACCATTACGCCAACGGAAC CAACTTGGTT chrIII:123420-123835 + 44 5.26e-07 CACCCTAAGC GAGAATCATACCTCTAGACCACACGCCC TCCTTTGAAA chrXIII:362860-363326 - 21 6.23e-07 GCCACAACGA TGTGTACTAACCACTATACTAAGATGGC AAACTTGGAT chrVIII:62518-63056 - 18 6.23e-07 GCCACAACGA TGTGTACTAACCACTATACTAAGATGGC ATATGATTTT chrVII:110431-110964 + 22 6.23e-07 GCCACAACGA TGTGTACTAACCACTATACTAAGATGGC AGGTAATTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYTAMCCACTRSGCCAHRNRVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:656719-657194 5.5e-13 72_[+2] chrXI:219631-220138 5.5e-13 60_[-2]_12 chrX:197134-197659 5.5e-13 11_[+2]_61 chrXV:854014-854441 1.1e-12 54_[+2]_18 chrV:311754-312428 1.1e-12 26_[+2]_46 chrXVI:689320-689825 3.1e-12 42_[-2]_30 chrXIII:258905-259604 3.1e-12 7_[+2]_65 chrXII:167686-168266 3.1e-12 71_[+2]_1 chrX:523852-524306 3.1e-12 36_[+2]_36 chrVIII:132832-133370 3.1e-12 28_[+2]_44 chrV:86336-86944 3.1e-12 13_[-2]_59 chrIV:980785-981288 3.1e-12 41_[+2]_31 chrIV:437479-438119 3.1e-12 22_[-2]_50 chrXVI:880069-880594 6.8e-12 60_[+2]_12 chrXIV:569601-570180 6.8e-12 72_[+2] chrXII:734525-735139 6.8e-12 19_[-2]_53 chrVII:738794-739470 6.8e-12 39_[-2]_33 chrV:550907-551710 6.8e-12 72_[+2] chrXV:353868-354305 9.8e-12 49_[+2]_23 chrXIV:560511-561019 9.8e-12 22_[+2]_50 chrVIII:115813-116452 9.8e-12 69_[+2]_3 chrIX:174750-175293 9.8e-12 59_[-2]_13 chrII:266133-266715 9.8e-12 3_[-2]_69 chrIII:227742-228194 6.2e-11 23_[-2]_49 chrXII:731879-732338 7.3e-11 31_[-2]_41 chrX:617681-618168 7.3e-11 44_[-2]_28 chrXVI:581698-582400 1.4e-09 62_[-2]_10 chrXIII:480402-480946 1.4e-09 41_[+2]_31 chrXI:202839-203255 1.4e-09 1_[-2]_71 chrVI:226515-226943 1.4e-09 53_[+2]_19 chrV:135175-135729 1.4e-09 67_[+2]_5 chrIV:1352308-1352758 1.4e-09 27_[+2]_45 chrXIII:420303-420993 1.8e-09 35_[+2]_37 chrXI:307985-308440 1.8e-09 27_[+2]_45 chrVII:823236-823695 1.8e-09 66_[-2]_6 chrVII:412099-412627 1.8e-09 26_[+2]_46 chrV:438477-439008 1.8e-09 7_[-2]_65 chrIV:1095156-1095707 2.5e-09 52_[+2]_20 chrXIII:504381-505404 3.1e-09 52_[-2]_20 chrXII:628153-628638 3.1e-09 37_[-2]_35 chrVII:857270-857650 3.1e-09 53_[+2]_19 chrVII:205311-205742 3.1e-09 44_[-2]_28 chrXVI:810431-810915 3.9e-09 52_[-2]_20 chrXV:487190-487748 3.9e-09 19_[-2]_53 chrXV:228070-228594 3.9e-09 48_[-2]_24 chrVI:137174-137987 3.9e-09 1_[+2]_71 chrIII:127508-128013 3.9e-09 5_[-2]_67 chrXIII:352072-352467 4.8e-09 60_[-2]_12 chrVIII:358290-358883 4.8e-09 5_[+2]_67 chrVIII:237690-238178 4.8e-09 27_[+2]_45 chrII:36163-36603 4.8e-09 64_[-2]_8 chrXV:464209-464654 3.2e-08 68_[-2]_4 chrXVI:860096-860649 3.4e-08 56_[-2]_16 chrXIII:183736-184192 3.4e-08 26_[+2]_46 chrX:531433-532275 3.4e-08 23_[-2]_49 chrX:396312-397311 3.4e-08 7_[+2]_65 chrIV:992598-993039 3.4e-08 63_[-2]_9 chrXVI:775628-776060 4.1e-08 14_[+2]_58 chrXVI:435641-436206 4.1e-08 63_[+2]_9 chrXV:976148-976717 4.1e-08 38_[-2]_34 chrX:374227-374962 4.1e-08 5_[+2]_67 chrX:355100-355730 4.1e-08 8_[-2]_64 chrVII:706945-707356 4.1e-08 51_[+2]_21 chrIV:1175549-1176129 4.1e-08 39_[-2]_33 chrIV:568486-569254 4.1e-08 61_[-2]_11 chrII:405542-406245 4.1e-08 34_[-2]_38 chrXIII:808009-808569 5.2e-08 50_[+2]_22 chrV:250098-250557 5.2e-08 8_[-2]_64 chrIV:802530-803024 5.2e-08 47_[+2]_25 chrIV:645021-645395 5.2e-08 38_[+2]_34 chrIII:168137-168624 5.2e-08 14_[+2]_58 chrXV:110838-111267 5.6e-08 3_[+2]_69 chrXIV:95959-96650 5.6e-08 30_[+2]_42 chrII:350591-351084 1.3e-07 39_[-2]_33 chrII:9314-9921 1.4e-07 15_[-2]_57 chrXVI:743754-744818 1.6e-07 47_[-2]_25 chrVII:661466-662071 1.6e-07 30_[-2]_42 chrXV:594089-594777 2.2e-07 14_[+2]_58 chrX:538328-538826 4.2e-07 27_[-2]_45 chrIII:123420-123835 5.3e-07 43_[+2]_29 chrXIII:362860-363326 6.2e-07 20_[-2]_52 chrVIII:62518-63056 6.2e-07 17_[-2]_55 chrVII:110431-110964 6.2e-07 21_[+2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYTAMCCACTRSGCCAHRNRVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DDSSCBYTAMCCACTRSGCCAHRNRVSC width=28 seqs=83 chrXII:656719-657194 ( 73) AGCGCGCTACCGACTACGCCACACGCCC 1 chrXI:219631-220138 ( 61) AGCGCGCTACCGACTACGCCACACGCCC 1 chrX:197134-197659 ( 12) AGCGCGCTACCGACTACGCCACACGCCC 1 chrXV:854014-854441 ( 55) AGCGCGCTACCAACTGCGCCATGTGCCC 1 chrV:311754-312428 ( 27) AGCGCGCTACCAACTGCGCCATGTGCCC 1 chrXVI:689320-689825 ( 43) GTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXIII:258905-259604 ( 8) TTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:167686-168266 ( 72) TTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrX:523852-524306 ( 37) TTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrVIII:132832-133370 ( 29) TTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrV:86336-86944 ( 14) TTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrIV:980785-981288 ( 42) TTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrIV:437479-438119 ( 23) TTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXVI:880069-880594 ( 61) GTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXIV:569601-570180 ( 73) GTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:734525-735139 ( 20) GTGCCTTAACCAACTGGGCCAAGAGACC 1 chrVII:738794-739470 ( 40) GTGCCTTAACCAACTGGGCCAAGAGACC 1 chrV:550907-551710 ( 73) GTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXV:353868-354305 ( 50) GGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXIV:560511-561019 ( 23) GGCGCCTTACCAACTTGGCCATAGAAGC 1 chrVIII:115813-116452 ( 70) GGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIX:174750-175293 ( 60) GGCGCCTTACCAACTTGGCCATAGAAGC 1 chrII:266133-266715 ( 4) GGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIII:227742-228194 ( 24) CTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXII:731879-732338 ( 32) ACGCCTTAAACCACTCGGCCAAACTCCC 1 chrX:617681-618168 ( 45) ACGCCTTAAACCACTCGGCCAAACTCCC 1 chrXVI:581698-582400 ( 63) TACGCGCTACCGATTGCGCCAACAAGGC 1 chrXIII:480402-480946 ( 42) TACGCGCTACCGATTGCGCCAACAAGGC 1 chrXI:202839-203255 ( 2) TACGCGCTACCGATTGCGCCAACAAGGC 1 chrVI:226515-226943 ( 54) TACGCGCTACCGATTGCGCCAACAAGGC 1 chrV:135175-135729 ( 68) TACGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1352308-1352758 ( 28) TACGCGCTACCGATTGCGCCAACAAGGC 1 chrXIII:420303-420993 ( 36) ATGCCATAACCGACTAGACCACGAAACC 1 chrXI:307985-308440 ( 28) ATGCCATAACCGACTAGACCACGAAACC 1 chrVII:823236-823695 ( 67) ATGCCATAACCGACTAGACCACGAAACC 1 chrVII:412099-412627 ( 27) ATGCCATAACCGACTAGACCACGAAACC 1 chrV:438477-439008 ( 8) ATGCCATAACCGACTAGACCACGAAACC 1 chrIV:1095156-1095707 ( 53) GGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrXIII:504381-505404 ( 53) GCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXII:628153-628638 ( 38) GCGCCTTAGACCGCTCGGCCAAACAACC 1 chrVII:857270-857650 ( 54) GCGCCTTAGACCGCTCGGCCAAACAACC 1 chrVII:205311-205742 ( 45) GCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXVI:810431-810915 ( 53) ACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXV:487190-487748 ( 20) ACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXV:228070-228594 ( 49) ACGCCTTAACCAACTTGGCCATGGAGTC 1 chrVI:137174-137987 ( 2) ACGCCTTAACCAACTTGGCCATGGAGTC 1 chrIII:127508-128013 ( 6) ACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXIII:352072-352467 ( 61) GGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:358290-358883 ( 6) GGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:237690-238178 ( 28) GGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrII:36163-36603 ( 65) GGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrXV:464209-464654 ( 69) GAGAATCATACCACTAGACCACACGCCC 1 chrXVI:860096-860649 ( 57) TTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:183736-184192 ( 27) TTGGATTTTACCACTAAACCACTTGCGC 1 chrX:531433-532275 ( 24) TTGGATTTTACCACTAAACCACTTGCGC 1 chrX:396312-397311 ( 8) TTGGATTTTACCACTAAACCACTTGCGC 1 chrIV:992598-993039 ( 64) TTGGATTTTACCACTAAACCACTTGCGC 1 chrXVI:775628-776060 ( 15) TGCTGCGCTACCACTGCGCCATACGAGC 1 chrXVI:435641-436206 ( 64) TGCTGCGCTACCACTGCGCCATACGAGC 1 chrXV:976148-976717 ( 39) GACGCTCTTCCTACTGAGCTACTGAAGC 1 chrX:374227-374962 ( 6) AGACGCGTTGCCATTACGCCACGCGAGC 1 chrX:355100-355730 ( 9) AGACGCGTTGCCATTACGCCACGCGAGC 1 chrVII:706945-707356 ( 52) TGCTGCGCTACCACTGCGCCATACGAGC 1 chrIV:1175549-1176129 ( 40) GACGCTCTTCCTACTGAGCTACTGAAGC 1 chrIV:568486-569254 ( 62) AGACGCGTTGCCATTACGCCACGCGAGC 1 chrII:405542-406245 ( 35) AGACGCGTTGCCATTACGCCACGCGAGC 1 chrXIII:808009-808569 ( 51) AAAGTGATAACCACTACACTATAGGACC 1 chrV:250098-250557 ( 9) AAAGTGATAACCACTACACTATAGGACC 1 chrIV:802530-803024 ( 48) AAAGTGATAACCACTACACTATAGGACC 1 chrIV:645021-645395 ( 39) AAAGTGATAACCACTACACTATAGGACC 1 chrIII:168137-168624 ( 15) AAAGTGATAACCACTACACTATAGGACC 1 chrXV:110838-111267 ( 4) GGGATGATAACCACTACACTAACCGCCC 1 chrXIV:95959-96650 ( 31) GGGATGATAACCACTACACTAACCGCCC 1 chrII:350591-351084 ( 40) AAAGTGATAACCACTACACTATAAAACC 1 chrII:9314-9921 ( 16) CCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXVI:743754-744818 ( 48) CAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:661466-662071 ( 31) CAACGCTCTACCACTAAGCTAAGGAGGC 1 chrXV:594089-594777 ( 15) TAAATTCTAACCACTGAACCACTTGCGC 1 chrX:538328-538826 ( 28) AGACGCGTTACCATTACGCCAACGGAAC 1 chrIII:123420-123835 ( 44) GAGAATCATACCTCTAGACCACACGCCC 1 chrXIII:362860-363326 ( 21) TGTGTACTAACCACTATACTAAGATGGC 1 chrVIII:62518-63056 ( 18) TGTGTACTAACCACTATACTAAGATGGC 1 chrVII:110431-110964 ( 22) TGTGTACTAACCACTATACTAAGATGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYTAMCCACTRSGCCAHRNRVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 42267 bayes= 6.61724 E= 2.4e-276 9 -192 78 -8 -47 -34 88 -13 -91 121 103 -313 -240 94 160 -313 -191 183 -60 -113 -172 66 33 28 -172 66 -92 71 -13 -160 -1302 104 104 -160 -160 -47 64 133 -192 -1302 -1302 245 -1302 -1302 -26 157 -12 -372 157 -1302 -192 -471 -1302 225 -1302 -126 -1302 -1302 -1302 166 33 8 66 -140 -81 83 133 -313 -13 -1302 196 -1302 -1302 245 -1302 -1302 -1302 205 -1302 -40 166 -1302 -1302 -1302 53 54 -1302 -20 24 -60 116 -172 -40 47 54 -40 19 -134 112 -91 41 54 72 -471 -471 143 125 -240 -1302 245 -1302 -1302 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYTAMCCACTRSGCCAHRNRVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 83 E= 2.4e-276 0.337349 0.048193 0.313253 0.301205 0.228916 0.144578 0.337349 0.289157 0.168675 0.421687 0.373494 0.036145 0.060241 0.349398 0.554217 0.036145 0.084337 0.650602 0.120482 0.144578 0.096386 0.289157 0.228916 0.385542 0.096386 0.289157 0.096386 0.518072 0.289157 0.060241 0.000000 0.650602 0.650602 0.060241 0.060241 0.228916 0.493976 0.457831 0.048193 0.000000 0.000000 1.000000 0.000000 0.000000 0.265060 0.542169 0.168675 0.024096 0.939759 0.000000 0.048193 0.012048 0.000000 0.867470 0.000000 0.132530 0.000000 0.000000 0.000000 1.000000 0.397590 0.192771 0.289157 0.120482 0.180723 0.325301 0.457831 0.036145 0.289157 0.000000 0.710843 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.759036 0.000000 0.240964 1.000000 0.000000 0.000000 0.000000 0.457831 0.265060 0.000000 0.277108 0.373494 0.120482 0.409639 0.096386 0.240964 0.253012 0.265060 0.240964 0.361446 0.072289 0.397590 0.168675 0.421687 0.265060 0.301205 0.012048 0.012048 0.493976 0.433735 0.060241 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DDSSCBYTAMCCACTRSGCCAHRNRVSC MEME-2 regular expression -------------------------------------------------------------------------------- [AGT][GTA][CG][GC]C[TCG][TC][TA][AT][AC]C[CA]ACT[AG][GC][GA]C[CT]A[ATC][GA][GCAT][GA][AGC][CG]C -------------------------------------------------------------------------------- Time 629.19 secs. ******************************************************************************** ******************************************************************************** MOTIF CACCCRTACAYCACA MEME-3 width = 15 sites = 63 llr = 788 E-value = 1.2e-077 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACCCRTACAYCACA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 19:::7:7:9:15:6 pos.-specific C 8:8aa:3:a177262 probability G 11:::3:3::::212 matrix T ::2:::6:::32231 bits 2.5 * 2.2 ** * 2.0 ** * 1.7 ** * Relative 1.5 *** * Entropy 1.2 ***** *** (18.0 bits) 1.0 ****** **** 0.7 ************ * 0.5 ************ * 0.2 *************** 0.0 --------------- Multilevel CACCCATACACCACA consensus GCG T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCACA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXV:639179-639436 - 57 6.38e-10 ACTACTTTTA CACCCGTACACCACA CATACAACCG chrXIII:5321-5758 + 55 1.11e-09 TATACACCCA CACCCACACACCACA CCCACACCCA chrXII:1064851-1065377 - 26 1.11e-09 ACACCCACCA CACCCACACACCACA CACACACACA chrXII:11003-11607 + 15 1.11e-09 ACACACACCA CACCCACACACCACA CCCACACCCA chrXII:5450-5911 + 37 1.11e-09 ATATACACCA CACCCACACACCACA CCCACACCAC chrVIII:562314-562579 - 67 1.11e-09 CACACACCCA CACCCACACACCACA CCCACACTTT chrIV:27-348 + 1 1.11e-09 . CACCCACACACCACA CACTACCCCT chrXI:614121-614443 + 72 1.37e-09 ATGACTGCAA CACCCGCACACCACA AGGTGAAGGG chrX:545465-545669 - 37 3.74e-09 AAAAGACAGC CACCCATGCACCGCA CTCGCACGTG chrX:690553-690815 + 82 4.34e-09 GTCATCAACA CACCCGTACACCACC ATGT chrVII:371221-371508 + 42 9.51e-09 AAAATACCGG CACCCATGCACCTCA CACCGCCGCA chrIV:1062756-1063109 - 72 2.53e-08 AAATAAATAG CACCCACACATCGCA TGATGGCAGG chrV:6122-6650 + 14 3.11e-08 CCCACACCCA CACCCACACACCATG CTCACCTTCA chrVI:95419-95911 - 18 4.16e-08 ATCAGTCATG CACCCACACACCGGA CTGCGTATAG chrVII:856723-856971 - 64 4.66e-08 TGAGGGTACC CGCCCATACACCGCA CCAATGGAAC chrXII:903412-903672 + 31 7.26e-08 AGAAGCATTG GACCCATGCACCACA TGCATTAGGA chrXV:968121-968448 - 32 8.42e-08 GAGCAGCGCA CGCCCACGCACCCCA CGCTTTTGAG chrVII:10207-10520 + 17 9.29e-08 TTAAACAGTG CACCCGTGCATCATA CCTCATGCAA chrIII:316350-316619 - 83 9.29e-08 CCA CACCCACACACTACC CTAACACTAC chrX:160026-160321 + 52 1.03e-07 ATGTGTGACA CACCCATACCCCATA ATGTTGCACG chrIV:538917-539276 + 60 1.03e-07 TGAATTATCA CACCCACACCCCTCA TTCAATCCTT chrV:110413-110920 + 63 1.16e-07 GTGACAAACA CACCCAGACACCTCA ATAGACAACA chrII:181273-181667 + 76 1.30e-07 CTTTACAAAG CACCCATACATTACA TTGAATACAT chrXII:1028198-1028620 + 40 2.15e-07 GACAAAATAT CACCCATGCACCAAA ATGTATGGGT chrXIII:302844-303132 - 24 2.40e-07 CGCATATGGG CGCCCACACCCCACA CCCCTGGATT chrIX:382145-382375 - 73 3.86e-07 AACGGTACCG CACCCACACATTACC GAAAGCGCTC chrI:81838-82353 - 62 4.30e-07 ACTGTTGGTA CATCCGTGCACCTCC GCTAGATGAG chrIV:976558-976755 + 58 5.29e-07 CTGTGCATAG TACCCATACACCACA ATTTCTGACT chrIV:411209-411666 + 49 5.29e-07 ACAAATCAAA CACCCACACCCCGGG CACCCAAAGT chrXV:1025720-1026111 + 12 7.27e-07 ATATGCTGAA CACCCATTCATCACG TGTAATTGGA chrXII:370630-370947 - 45 8.03e-07 GCACTTCGCC CACCCATGAACCACA CGGTTAGTCC chrVII:726129-727105 + 21 8.78e-07 ATTAACTGTA CACCCATACCCTATA TACACCCATA chrXI:67741-68035 + 76 1.06e-06 CCCGTGCTGA AATCCGTGCACCGCA TCAAATTTTC chrVII:276887-277650 + 10 1.16e-06 TTTAAGCTA GACCCATACACCCGC TCTATGGGAT chrIX:254237-254564 - 5 1.16e-06 CGAGCTTCCG CACCCACACATTCTA ATTG chrIV:358060-358487 - 23 1.16e-06 GTGTACACAC CACCCATACATTATC TGACAAGGAA chrXI:382211-382467 + 17 1.28e-06 GCTGCTGTTG CATCCGGACATCACA CCCAACACAA chrXVI:135403-135865 - 39 1.68e-06 AGACTGCTAA AATCCGTGCACCCCG TAAAGTATGC chrXV:216249-216691 + 56 1.68e-06 CGCCTTCCTC AACCCAGGCACCGCC CCCAGGTAAC chrIII:58690-58994 + 80 1.68e-06 TGCGTGGGTA CATCCGTGCACCATT TCTGAA chrXV:901420-901711 - 22 1.83e-06 CGGGACTGTT CACCCGTACATTTTA CGTTTCCGAC chrVIII:296803-297295 + 59 2.20e-06 CAATTTCGTC CACCAGTACATCACA GCATGCTCTC chrXV:161100-161403 - 42 2.40e-06 CTGGCAACCA AACCCATACATCGGG ATTCCTATAA chrXVI:699807-700679 + 68 2.62e-06 CACTTCAAAA CACCCAAGCACAGCA TACTAAATTT chrX:90021-90469 + 67 2.85e-06 TGGACATTCT CACCCATACATGGCC TTGTTTTTTT chrVII:1000308-1000610 + 50 2.85e-06 ACTAGGATAG CACCCAAACACCTGC ATATTTGGAC chrII:415471-415951 - 19 3.09e-06 TCCTTTTTTA CACCCATGCATTTTG TCATCCAGAC chrXIII:797946-798140 + 52 3.65e-06 TTTCCGTTAC CCGCCGTGCACCACA GCATCGCTGC chrXV:505030-505539 + 61 3.96e-06 ATTCATTTCA AACCCATACACAATG AACCTTATCA chrXII:645772-646052 + 85 4.99e-06 GTTCCACCCA CACCCATTCACCCGT C chrVII:254100-254645 - 22 5.38e-06 TTTGAGGTTG CACCCGTGCATATTG AAAGATGTAT chrII:44977-45407 + 29 5.80e-06 GACAATCATG CATCCGTACATTCTA TGTATGTTTG chrXII:932042-932505 - 41 6.74e-06 TACATCCGTA CATCCGTACATCCGT ACATCTGTAC chrXII:424123-424503 - 60 6.74e-06 ATACCCGCAA GGGCCGTGCACCACA GCAATGTACG chrVII:648916-649437 - 5 6.74e-06 GTACAACGAG AACCCATACATTACT TTTT chrV:305195-306892 + 9 6.74e-06 CATTTACA AGCCCACACATCCTA CAACTTTCTT chrXI:158172-158705 + 13 7.25e-06 CATTTATTTC AACCCGTGCACACTG GAAATAAATC chrIV:1355696-1356093 - 16 9.00e-06 CTCCCTGTAA CATCCATACATTCGG TTAAAATTAC chrIX:99601-100053 - 48 1.11e-05 GCAATTAAAG CATCGGTACACCATG TAACACCAGT chrXV:673439-674276 - 17 1.19e-05 GGACTTTCAA AAGCCGTACACCTCT TGTACTGAGG chrXII:48641-49205 - 27 1.28e-05 TCCCAATGAA GATCCGTACATCTTA GACACCCTTT chrXI:114886-115193 + 14 1.56e-05 CGAAAATTAG CACCCATACCCAGAG TTCATAAATC chrVII:788282-788756 - 57 1.66e-05 TTCCTTACAA CATCCGTGCATACTC TAAACCCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCACA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639179-639436 6.4e-10 56_[-3]_29 chrXIII:5321-5758 1.1e-09 54_[+3]_31 chrXII:1064851-1065377 1.1e-09 25_[-3]_60 chrXII:11003-11607 1.1e-09 14_[+3]_71 chrXII:5450-5911 1.1e-09 36_[+3]_49 chrVIII:562314-562579 1.1e-09 66_[-3]_19 chrIV:27-348 1.1e-09 [+3]_85 chrXI:614121-614443 1.4e-09 71_[+3]_14 chrX:545465-545669 3.7e-09 36_[-3]_49 chrX:690553-690815 4.3e-09 81_[+3]_4 chrVII:371221-371508 9.5e-09 41_[+3]_44 chrIV:1062756-1063109 2.5e-08 71_[-3]_14 chrV:6122-6650 3.1e-08 13_[+3]_72 chrVI:95419-95911 4.2e-08 17_[-3]_68 chrVII:856723-856971 4.7e-08 63_[-3]_22 chrXII:903412-903672 7.3e-08 30_[+3]_55 chrXV:968121-968448 8.4e-08 31_[-3]_54 chrVII:10207-10520 9.3e-08 16_[+3]_69 chrIII:316350-316619 9.3e-08 82_[-3]_3 chrX:160026-160321 1e-07 51_[+3]_34 chrIV:538917-539276 1e-07 59_[+3]_26 chrV:110413-110920 1.2e-07 62_[+3]_23 chrII:181273-181667 1.3e-07 75_[+3]_10 chrXII:1028198-1028620 2.1e-07 39_[+3]_46 chrXIII:302844-303132 2.4e-07 23_[-3]_62 chrIX:382145-382375 3.9e-07 72_[-3]_13 chrI:81838-82353 4.3e-07 61_[-3]_24 chrIV:976558-976755 5.3e-07 57_[+3]_28 chrIV:411209-411666 5.3e-07 48_[+3]_37 chrXV:1025720-1026111 7.3e-07 11_[+3]_74 chrXII:370630-370947 8e-07 44_[-3]_41 chrVII:726129-727105 8.8e-07 20_[+3]_65 chrXI:67741-68035 1.1e-06 75_[+3]_10 chrVII:276887-277650 1.2e-06 9_[+3]_76 chrIX:254237-254564 1.2e-06 4_[-3]_81 chrIV:358060-358487 1.2e-06 22_[-3]_63 chrXI:382211-382467 1.3e-06 16_[+3]_69 chrXVI:135403-135865 1.7e-06 38_[-3]_47 chrXV:216249-216691 1.7e-06 55_[+3]_30 chrIII:58690-58994 1.7e-06 79_[+3]_6 chrXV:901420-901711 1.8e-06 21_[-3]_64 chrVIII:296803-297295 2.2e-06 58_[+3]_27 chrXV:161100-161403 2.4e-06 41_[-3]_44 chrXVI:699807-700679 2.6e-06 67_[+3]_18 chrX:90021-90469 2.8e-06 66_[+3]_19 chrVII:1000308-1000610 2.8e-06 49_[+3]_36 chrII:415471-415951 3.1e-06 18_[-3]_67 chrXIII:797946-798140 3.6e-06 51_[+3]_34 chrXV:505030-505539 4e-06 60_[+3]_25 chrXII:645772-646052 5e-06 84_[+3]_1 chrVII:254100-254645 5.4e-06 21_[-3]_64 chrII:44977-45407 5.8e-06 28_[+3]_57 chrXII:932042-932505 6.7e-06 40_[-3]_45 chrXII:424123-424503 6.7e-06 59_[-3]_26 chrVII:648916-649437 6.7e-06 4_[-3]_81 chrV:305195-306892 6.7e-06 8_[+3]_77 chrXI:158172-158705 7.3e-06 12_[+3]_73 chrIV:1355696-1356093 9e-06 15_[-3]_70 chrIX:99601-100053 1.1e-05 47_[-3]_38 chrXV:673439-674276 1.2e-05 16_[-3]_69 chrXII:48641-49205 1.3e-05 26_[-3]_59 chrXI:114886-115193 1.6e-05 13_[+3]_72 chrVII:788282-788756 1.7e-05 56_[-3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCACA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACCCRTACAYCACA width=15 seqs=63 chrXV:639179-639436 ( 57) CACCCGTACACCACA 1 chrXIII:5321-5758 ( 55) CACCCACACACCACA 1 chrXII:1064851-1065377 ( 26) CACCCACACACCACA 1 chrXII:11003-11607 ( 15) CACCCACACACCACA 1 chrXII:5450-5911 ( 37) CACCCACACACCACA 1 chrVIII:562314-562579 ( 67) CACCCACACACCACA 1 chrIV:27-348 ( 1) CACCCACACACCACA 1 chrXI:614121-614443 ( 72) CACCCGCACACCACA 1 chrX:545465-545669 ( 37) CACCCATGCACCGCA 1 chrX:690553-690815 ( 82) CACCCGTACACCACC 1 chrVII:371221-371508 ( 42) CACCCATGCACCTCA 1 chrIV:1062756-1063109 ( 72) CACCCACACATCGCA 1 chrV:6122-6650 ( 14) CACCCACACACCATG 1 chrVI:95419-95911 ( 18) CACCCACACACCGGA 1 chrVII:856723-856971 ( 64) CGCCCATACACCGCA 1 chrXII:903412-903672 ( 31) GACCCATGCACCACA 1 chrXV:968121-968448 ( 32) CGCCCACGCACCCCA 1 chrVII:10207-10520 ( 17) CACCCGTGCATCATA 1 chrIII:316350-316619 ( 83) CACCCACACACTACC 1 chrX:160026-160321 ( 52) CACCCATACCCCATA 1 chrIV:538917-539276 ( 60) CACCCACACCCCTCA 1 chrV:110413-110920 ( 63) CACCCAGACACCTCA 1 chrII:181273-181667 ( 76) CACCCATACATTACA 1 chrXII:1028198-1028620 ( 40) CACCCATGCACCAAA 1 chrXIII:302844-303132 ( 24) CGCCCACACCCCACA 1 chrIX:382145-382375 ( 73) CACCCACACATTACC 1 chrI:81838-82353 ( 62) CATCCGTGCACCTCC 1 chrIV:976558-976755 ( 58) TACCCATACACCACA 1 chrIV:411209-411666 ( 49) CACCCACACCCCGGG 1 chrXV:1025720-1026111 ( 12) CACCCATTCATCACG 1 chrXII:370630-370947 ( 45) CACCCATGAACCACA 1 chrVII:726129-727105 ( 21) CACCCATACCCTATA 1 chrXI:67741-68035 ( 76) AATCCGTGCACCGCA 1 chrVII:276887-277650 ( 10) GACCCATACACCCGC 1 chrIX:254237-254564 ( 5) CACCCACACATTCTA 1 chrIV:358060-358487 ( 23) CACCCATACATTATC 1 chrXI:382211-382467 ( 17) CATCCGGACATCACA 1 chrXVI:135403-135865 ( 39) AATCCGTGCACCCCG 1 chrXV:216249-216691 ( 56) AACCCAGGCACCGCC 1 chrIII:58690-58994 ( 80) CATCCGTGCACCATT 1 chrXV:901420-901711 ( 22) CACCCGTACATTTTA 1 chrVIII:296803-297295 ( 59) CACCAGTACATCACA 1 chrXV:161100-161403 ( 42) AACCCATACATCGGG 1 chrXVI:699807-700679 ( 68) CACCCAAGCACAGCA 1 chrX:90021-90469 ( 67) CACCCATACATGGCC 1 chrVII:1000308-1000610 ( 50) CACCCAAACACCTGC 1 chrII:415471-415951 ( 19) CACCCATGCATTTTG 1 chrXIII:797946-798140 ( 52) CCGCCGTGCACCACA 1 chrXV:505030-505539 ( 61) AACCCATACACAATG 1 chrXII:645772-646052 ( 85) CACCCATTCACCCGT 1 chrVII:254100-254645 ( 22) CACCCGTGCATATTG 1 chrII:44977-45407 ( 29) CATCCGTACATTCTA 1 chrXII:932042-932505 ( 41) CATCCGTACATCCGT 1 chrXII:424123-424503 ( 60) GGGCCGTGCACCACA 1 chrVII:648916-649437 ( 5) AACCCATACATTACT 1 chrV:305195-306892 ( 9) AGCCCACACATCCTA 1 chrXI:158172-158705 ( 13) AACCCGTGCACACTG 1 chrIV:1355696-1356093 ( 16) CATCCATACATTCGG 1 chrIX:99601-100053 ( 48) CATCGGTACACCATG 1 chrXV:673439-674276 ( 17) AAGCCGTACACCTCT 1 chrXII:48641-49205 ( 27) GATCCGTACATCTTA 1 chrXI:114886-115193 ( 14) CACCCATACCCAGAG 1 chrVII:788282-788756 ( 57) CATCCGTGCATACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCACA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 49794 bayes= 10.9362 E= 1.2e-077 -115 209 -152 -432 151 -352 -120 -1262 -1262 209 -194 -86 -1262 245 -1262 -1262 -432 241 -352 -1262 107 -1262 87 -1262 -332 65 -194 100 107 -1262 72 -332 -432 243 -1262 -1262 151 -94 -1262 -1262 -1262 187 -1262 7 -174 197 -352 -86 63 -7 -7 -100 -332 164 -52 -23 85 -20 6 -200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCACA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 63 E= 1.2e-077 0.142857 0.777778 0.063492 0.015873 0.904762 0.015873 0.079365 0.000000 0.000000 0.777778 0.047619 0.174603 0.000000 1.000000 0.000000 0.000000 0.015873 0.968254 0.015873 0.000000 0.666667 0.000000 0.333333 0.000000 0.031746 0.285714 0.047619 0.634921 0.666667 0.000000 0.301587 0.031746 0.015873 0.984127 0.000000 0.000000 0.904762 0.095238 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.095238 0.714286 0.015873 0.174603 0.492063 0.174603 0.174603 0.158730 0.031746 0.571429 0.126984 0.269841 0.571429 0.158730 0.190476 0.079365 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCRTACAYCACA MEME-3 regular expression -------------------------------------------------------------------------------- CACCC[AG][TC][AG]CA[CT]CA[CT]A -------------------------------------------------------------------------------- Time 920.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4-1388 8.86e-01 100 chrI:81838-82353 1.48e-04 61_[-3(4.30e-07)]_24 chrI:138725-139376 7.78e-01 100 chrI:142051-143663 3.06e-01 100 chrI:166016-166770 9.64e-01 100 chrI:180847-181790 3.04e-01 100 chrI:182354-183255 6.18e-01 100 chrI:229179-230195 1.06e-01 100 chrII:9314-9921 1.70e-08 15_[-2(1.38e-07)]_31_[-1(1.61e-07)]_\ 5 chrII:36163-36603 3.22e-05 64_[-2(4.77e-09)]_8 chrII:44977-45407 9.41e-03 28_[+3(5.80e-06)]_57 chrII:60151-61300 1.94e-01 100 chrII:87953-88621 2.54e-01 100 chrII:88971-90007 8.31e-01 100 chrII:164850-165395 2.05e-02 100 chrII:167717-169615 7.85e-01 100 chrII:181273-181667 6.73e-04 75_[+3(1.30e-07)]_10 chrII:196844-198349 9.44e-01 100 chrII:226831-227725 3.35e-01 100 chrII:266133-266715 7.95e-13 3_[-2(9.81e-12)]_15_[+1(1.06e-08)]_\ 33 chrII:326578-327218 1.65e-01 100 chrII:332300-334621 1.67e-01 100 chrII:347378-347973 5.13e-04 36_[-1(1.61e-07)]_43 chrII:350591-351084 6.33e-05 39_[-2(1.29e-07)]_33 chrII:362426-363321 9.74e-01 100 chrII:405542-406245 1.80e-10 34_[-2(4.06e-08)]_14_[+1(1.18e-09)]_\ 3 chrII:415471-415951 6.03e-03 2_[-3(8.39e-06)]_1_[-3(3.09e-06)]_\ 67 chrII:477039-477735 9.94e-02 100 chrII:478970-479418 2.62e-01 100 chrII:592399-593470 9.30e-02 100 chrII:604067-605240 9.99e-01 100 chrII:605398-607129 1.77e-01 100 chrII:642913-643378 3.03e-01 100 chrII:644971-645412 2.79e-07 67_[+1(9.07e-10)]_12 chrII:680307-682184 4.89e-01 100 chrIII:1-2113 5.90e-01 100 chrIII:11065-11536 9.53e-01 100 chrIII:13943-15958 1.51e-01 26_[-3(9.32e-05)]_59 chrIII:58690-58994 6.40e-03 79_[+3(1.68e-06)]_6 chrIII:82260-82801 8.50e-02 100 chrIII:123420-123835 3.57e-13 8_[-1(1.17e-12)]_14_[+2(5.26e-07)]_\ 29 chrIII:127508-128013 1.56e-09 5_[-2(3.86e-09)]_16_[+1(6.50e-08)]_\ 30 chrIII:128174-128502 9.32e-01 100 chrIII:142235-143013 6.28e-01 100 chrIII:161829-163896 2.31e-01 100 chrIII:168137-168624 1.31e-04 14_[+2(5.19e-08)]_58 chrIII:177057-177618 6.37e-01 100 chrIII:177767-178696 5.23e-01 100 chrIII:227742-228194 7.45e-08 23_[-2(6.25e-11)]_49 chrIII:262692-262944 2.19e-01 100 chrIII:292319-293048 6.49e-01 100 chrIII:294613-295974 6.11e-01 100 chrIII:316350-316619 5.71e-05 82_[-3(9.29e-08)]_3 chrIV:27-348 1.12e-06 [+3(1.11e-09)]_85 chrIV:83121-83787 3.75e-01 100 chrIV:116835-118206 5.87e-02 100 chrIV:118413-118915 9.64e-01 100 chrIV:125330-125628 8.08e-07 45_[-3(8.42e-08)]_40 chrIV:129528-131014 9.31e-01 100 chrIV:217115-218061 1.17e-01 12_[-2(5.91e-05)]_60 chrIV:221416-222420 6.32e-01 100 chrIV:229436-230709 9.50e-01 100 chrIV:307927-308974 7.64e-01 100 chrIV:321636-321994 1.26e-01 34_[+3(5.94e-05)]_51 chrIV:322224-323579 1.10e-01 100 chrIV:337961-341639 8.28e-01 100 chrIV:358060-358487 4.30e-03 22_[-3(1.16e-06)]_63 chrIV:359162-359859 1.40e-01 100 chrIV:410153-410705 1.69e-06 42_[+1(9.07e-10)]_37 chrIV:411209-411666 3.10e-04 48_[+3(5.29e-07)]_37 chrIV:433936-435220 2.05e-01 100 chrIV:437479-438119 7.31e-12 22_[-2(3.11e-12)]_24_[+1(4.22e-07)]_\ 5 chrIV:438278-438441 7.85e-01 100 chrIV:488396-489110 9.12e-01 100 chrIV:490731-491677 9.42e-01 100 chrIV:492099-492714 8.85e-01 100 chrIV:519526-520478 7.20e-01 100 chrIV:520677-521145 4.73e-01 100 chrIV:525102-525407 9.01e-01 100 chrIV:538917-539276 1.60e-05 59_[+3(1.03e-07)]_26 chrIV:568486-569254 2.76e-04 61_[-2(4.06e-08)]_11 chrIV:579039-580981 2.97e-01 100 chrIV:619644-620267 2.26e-04 72_[-1(9.93e-08)]_7 chrIV:645021-645395 3.38e-10 3_[-1(4.99e-09)]_14_[+2(5.19e-08)]_\ 34 chrIV:667768-668263 2.97e-07 50_[-1(1.79e-11)]_29 chrIV:802530-803024 3.38e-10 12_[-1(4.99e-09)]_14_[+2(5.19e-08)]_\ 1_[+1(5.81e-05)]_3 chrIV:835737-836307 2.12e-01 100 chrIV:884132-884583 3.16e-09 53_[-2(4.59e-10)]_19 chrIV:929222-930222 2.77e-01 100 chrIV:946147-946618 3.87e-05 38_[+1(5.59e-09)]_41 chrIV:976558-976755 3.75e-04 57_[+3(5.29e-07)]_28 chrIV:980785-981288 2.08e-08 41_[+2(3.11e-12)]_31 chrIV:992598-993039 1.40e-05 63_[-2(3.44e-08)]_9 chrIV:1012460-1013989 5.14e-01 100 chrIV:1016938-1017750 9.53e-01 100 chrIV:1062756-1063109 3.47e-04 71_[-3(2.53e-08)]_14 chrIV:1075341-1075735 1.02e-02 28_[+2(3.83e-06)]_44 chrIV:1095156-1095707 1.34e-05 52_[+2(2.49e-09)]_20 chrIV:1150431-1151695 9.89e-01 100 chrIV:1175549-1176129 1.12e-04 39_[-2(4.06e-08)]_33 chrIV:1201214-1203066 8.40e-01 100 chrIV:1236390-1238392 5.01e-01 100 chrIV:1256870-1257335 3.19e-01 100 chrIV:1300805-1301647 9.97e-01 100 chrIV:1305338-1306119 8.10e-04 4_[+1(4.22e-07)]_75 chrIV:1352308-1352758 1.22e-05 27_[+2(1.40e-09)]_45 chrIV:1355696-1356093 1.46e-02 15_[-3(9.00e-06)]_70 chrIV:1359355-1361118 3.04e-01 100 chrIV:1401214-1403341 2.36e-01 100 chrIV:1450472-1451451 7.30e-01 100 chrIV:1461438-1462453 6.02e-02 100 chrIV:1489024-1489972 9.81e-01 100 chrIV:1524053-1525666 1.09e-01 100 chrIX:1-243 7.93e-01 100 chrIX:67652-71157 3.05e-01 100 chrIX:99601-100053 2.17e-02 47_[-3(1.11e-05)]_38 chrIX:131775-132116 2.38e-01 100 chrIX:174750-175293 2.31e-07 59_[-2(9.81e-12)]_13 chrIX:183211-183710 4.76e-08 38_[-1(1.79e-11)]_41 chrIX:197223-198130 2.51e-06 7_[+1(9.07e-10)]_72 chrIX:210490-210963 4.76e-08 32_[+1(1.79e-11)]_47 chrIX:232690-233062 6.29e-01 100 chrIX:248604-249359 8.19e-01 100 chrIX:254237-254564 2.12e-03 4_[-3(1.16e-06)]_81 chrIX:257340-258048 7.85e-01 100 chrIX:299968-300523 1.57e-07 41_[-1(2.50e-11)]_38 chrIX:316018-317656 1.03e-01 100 chrIX:324090-324961 1.11e-02 100 chrIX:325493-326317 9.34e-01 100 chrIX:336117-336646 3.79e-05 26_[-1(1.17e-07)]_53 chrIX:370210-370656 2.79e-07 75_[+1(9.07e-10)]_4 chrIX:382145-382375 1.83e-03 72_[-3(3.86e-07)]_13 chrIX:438364-439886 7.16e-01 100 chrM:58240-58947 8.20e-01 100 chrM:60498-60921 8.18e-01 100 chrM:61101-61419 8.71e-01 100 chrV:6122-6650 2.64e-04 13_[+3(3.11e-08)]_72 chrV:13333-13656 8.67e-01 100 chrV:53316-54395 8.75e-01 100 chrV:60981-62220 8.70e-01 100 chrV:85137-85590 4.22e-01 100 chrV:86336-86944 7.31e-12 13_[-2(3.11e-12)]_24_[+1(4.22e-07)]_\ 14 chrV:99814-100377 5.68e-01 100 chrV:110413-110920 7.50e-04 62_[+3(1.16e-07)]_23 chrV:117635-118505 7.15e-03 58_[+2(2.05e-05)]_14 chrV:130580-131402 8.88e-01 100 chrV:135175-135729 2.65e-13 31_[-1(2.50e-11)]_15_[+2(1.40e-09)]_\ 5 chrV:138175-140028 9.03e-02 100 chrV:140259-140900 7.42e-01 100 chrV:176501-177418 5.31e-01 100 chrV:206787-207638 4.94e-01 100 chrV:250098-250557 3.38e-10 8_[-2(5.19e-08)]_14_[+1(4.99e-09)]_\ 29 chrV:269737-270889 3.02e-01 100 chrV:287925-288758 9.18e-01 100 chrV:305195-306892 2.83e-02 8_[+3(6.74e-06)]_77 chrV:311754-312428 6.62e-09 26_[+2(1.08e-12)]_46 chrV:321877-323002 9.21e-01 100 chrV:354657-355394 1.00e-06 [+1(9.07e-10)]_79 chrV:362111-363245 7.81e-01 100 chrV:396143-397933 4.69e-01 100 chrV:423109-424272 1.71e-01 100 chrV:430969-431596 2.58e-02 100 chrV:434391-436049 8.52e-01 100 chrV:436315-436499 9.75e-01 100 chrV:438477-439008 1.84e-10 7_[-2(1.77e-09)]_16_[+1(1.31e-08)]_\ 28 chrV:441726-442635 7.08e-02 100 chrV:442924-443515 4.76e-08 41_[-1(1.79e-11)]_38 chrV:469020-469730 2.75e-01 100 chrV:486916-487868 1.11e-01 100 chrV:492190-492714 2.25e-01 100 chrV:550907-551710 1.72e-15 35_[-1(1.79e-11)]_16_[+2(6.78e-12)] chrVI:4465-5750 1.23e-01 100 chrVI:63932-65385 4.92e-01 100 chrVI:95419-95911 2.72e-05 17_[-3(4.16e-08)]_68 chrVI:100960-101630 2.88e-01 100 chrVI:137174-137987 4.43e-05 1_[+2(3.86e-09)]_71 chrVI:157556-158663 1.00e+00 100 chrVI:161699-162516 9.61e-01 100 chrVI:167259-167737 3.46e-05 47_[+1(5.59e-09)]_32 chrVI:180533-181251 4.83e-01 100 chrVI:190955-191832 7.56e-01 100 chrVI:204757-205661 6.64e-01 100 chrVI:210451-210886 5.09e-07 9_[-1(5.59e-09)]_31_[+2(4.84e-05)]_\ 11 chrVI:221130-222084 9.57e-03 31_[-3(5.07e-05)]_54 chrVI:223318-224164 6.87e-02 100 chrVI:226515-226943 2.46e-13 17_[-1(2.50e-11)]_15_[+2(1.40e-09)]_\ 19 chrVI:269298-270159 9.90e-01 100 chrVII:502-1948 5.57e-01 100 chrVII:10207-10520 7.06e-04 16_[+3(9.29e-08)]_69 chrVII:73651-74395 3.70e-01 100 chrVII:110431-110964 3.34e-03 21_[+2(6.23e-07)]_51 chrVII:115226-115992 1.43e-02 100 chrVII:122074-122676 4.87e-01 100 chrVII:148495-149533 8.94e-01 100 chrVII:185251-185975 4.13e-01 100 chrVII:204847-205117 5.05e-01 100 chrVII:205311-205742 3.27e-06 44_[-2(3.11e-09)]_28 chrVII:228469-228875 6.06e-02 7_[+3(7.28e-05)]_78 chrVII:254100-254645 4.92e-03 6_[+3(9.68e-06)]_[-3(5.38e-06)]_64 chrVII:276887-277650 2.81e-03 9_[+3(1.16e-06)]_76 chrVII:277814-278040 8.74e-02 100 chrVII:286116-287675 7.31e-01 100 chrVII:291329-292017 3.72e-01 100 chrVII:310414-312273 9.61e-01 100 chrVII:319592-320182 8.00e-01 100 chrVII:327382-329394 5.31e-01 100 chrVII:343916-345251 9.24e-01 100 chrVII:364936-366739 9.62e-01 100 chrVII:371221-371508 4.01e-07 41_[+3(9.51e-09)]_15_[-1(3.86e-05)]_\ 8 chrVII:400342-401932 9.33e-01 100 chrVII:405316-405792 6.88e-06 7_[+1(1.18e-09)]_72 chrVII:412099-412627 9.35e-06 26_[+2(1.77e-09)]_46 chrVII:422807-423577 6.14e-01 100 chrVII:438534-439835 6.92e-01 100 chrVII:440336-441761 6.98e-01 100 chrVII:479186-482964 6.94e-02 38_[+3(3.64e-05)]_47 chrVII:531192-531825 7.26e-01 100 chrVII:534572-535245 5.95e-01 100 chrVII:541632-542165 2.79e-07 43_[+1(9.07e-10)]_36 chrVII:544360-546126 8.36e-01 100 chrVII:555095-557107 2.74e-02 100 chrVII:561388-561967 4.07e-04 43_[-1(4.22e-07)]_36 chrVII:648916-649437 1.08e-02 4_[-3(6.74e-06)]_81 chrVII:661466-662071 2.81e-07 30_[-2(1.59e-07)]_14_[+1(4.52e-07)]_\ 7 chrVII:700484-701316 3.58e-01 100 chrVII:706945-707356 8.80e-08 16_[-1(5.93e-07)]_14_[+2(4.06e-08)]_\ 21 chrVII:726129-727105 3.04e-03 20_[+3(8.78e-07)]_2_[+3(4.63e-06)]_\ 48 chrVII:730747-731427 3.36e-01 100 chrVII:736165-736682 8.81e-06 8_[+1(1.18e-09)]_71 chrVII:738794-739470 5.72e-08 39_[-2(6.78e-12)]_33 chrVII:773797-774654 8.12e-01 100 chrVII:779036-779902 9.96e-01 100 chrVII:788282-788756 2.95e-02 56_[-3(1.66e-05)]_29 chrVII:794063-794607 8.32e-01 100 chrVII:806612-808077 9.00e-01 100 chrVII:823236-823695 7.30e-06 66_[-2(1.77e-09)]_6 chrVII:828459-829318 5.72e-01 100 chrVII:844883-845929 9.84e-01 100 chrVII:856723-856971 5.21e-05 63_[-3(4.66e-08)]_22 chrVII:857270-857650 1.50e-05 53_[+2(3.11e-09)]_19 chrVII:875351-876699 9.76e-01 100 chrVII:878628-879081 3.46e-01 100 chrVII:882025-884022 1.79e-01 100 chrVII:919856-920307 2.12e-02 41_[+3(7.28e-05)]_3_[+3(9.32e-05)]_\ 26 chrVII:930710-931718 9.96e-01 100 chrVII:1000308-1000610 2.58e-03 49_[+3(2.85e-06)]_36 chrVII:1003939-1004391 9.94e-01 100 chrVII:1060036-1061158 9.69e-01 100 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100 chrXVI:559881-560504 4.26e-04 64_[-1(1.61e-07)]_15 chrXVI:571973-572802 5.31e-01 100 chrXVI:575129-575646 1.00e+00 100 chrXVI:575846-576001 8.40e-01 100 chrXVI:581698-582400 1.38e-06 62_[-2(1.40e-09)]_10 chrXVI:622150-622862 2.83e-01 100 chrXVI:653765-654640 1.56e-01 100 chrXVI:689320-689825 1.68e-08 42_[-2(3.11e-12)]_30 chrXVI:699807-700679 5.25e-03 38_[+3(5.35e-05)]_14_[+3(2.62e-06)]_\ 18 chrXVI:718490-719456 8.37e-01 100 chrXVI:731669-732324 8.98e-01 100 chrXVI:743754-744818 3.21e-04 47_[-2(1.59e-07)]_25 chrXVI:768954-769481 3.30e-07 48_[-1(1.64e-10)]_31 chrXVI:775628-776060 4.43e-04 14_[+2(4.06e-08)]_58 chrXVI:794467-795321 6.41e-01 100 chrXVI:810431-810915 1.09e-06 52_[-2(3.86e-09)]_20 chrXVI:819203-819771 2.51e-01 100 chrXVI:821597-822112 1.10e-01 100 chrXVI:856746-857232 1.69e-06 5_[+1(9.07e-10)]_74 chrXVI:860096-860649 5.34e-05 56_[-2(3.44e-08)]_16 chrXVI:880069-880594 1.56e-15 23_[-1(1.79e-11)]_16_[+2(6.78e-12)]_\ 12 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************