Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.076273 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.066745 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.086329 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.017429 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.089572 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background Finished invoke: name: bg status: 0 time: 0.020082 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 995.147196 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 36.239054 Invoking: centrimo -seqlen 710 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.188302 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.309068 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background -primary GRTCVBSGGTTCGANYCCSV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.646117 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background -primary WGSYYNYDTGGCSYAGTKGKTARAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.602387 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background -primary RAAAAAAAAAAAARAARAWAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.582342 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background -primary GGTAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.583394 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background -primary ATAGMAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.385606 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background -primary TATRTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.851047 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background -primary CAASTTGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.272945 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background --motif GRTCVBSGGTTCGANYCCSV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa Finished invoke: name: fimo1 status: 0 time: 0.379011 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background --motif WGSYYNYDTGGCSYAGTKGKTARAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa Finished invoke: name: fimo2 status: 0 time: 0.386108 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background --motif RAAAAAAAAAAAARAARAWAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa Finished invoke: name: fimo3 status: 0 time: 0.436543 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background --motif GGTAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa Finished invoke: name: fimo4 status: 0 time: 0.255003 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background --motif ATAGMAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa Finished invoke: name: fimo5 status: 0 time: 0.251633 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background --motif TATRTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa Finished invoke: name: fimo6 status: 0 time: 0.250616 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/background --motif CAASTTGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/BY4742--YAP1.fa Finished invoke: name: fimo7 status: 0 time: 0.269562 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--YAP1/summary.tsv Finished invoke: name: summary status: 0 time: 0.171623 Done