Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.048681
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.068119
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.104901
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.039182
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.089326
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background
Finished invoke:
  name: bg  status: 0  time: 0.044969
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 991.884009
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 104.029692
Invoking:
  centrimo -seqlen 420 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.165167
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.412136
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary GRATCGAACCSVKGAYCTYMBGRTTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.523136
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary SSCTYWAMCVACTVGGCCAMR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.525897
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary KATAGTGTARTGGTTAKCAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.362438
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary GCCWTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.690545
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary TACCAYTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.376003
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary CCRTAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.61367
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary AAGAAV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.757777
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary GCTACYGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.294439
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary ACCANC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.823161
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary CCATCGTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.294063
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary ACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.349864
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary GGCGCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.283254
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary CTGYTGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.484808
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary CTTCAYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.619689
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -primary CACTTKCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.290687
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif GRATCGAACCSVKGAYCTYMBGRTTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.67887
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif SSCTYWAMCVACTVGGCCAMR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.687553
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif KATAGTGTARTGGTTAKCAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.684484
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif GCCWTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.517792
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif TACCAYTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.565828
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif CCRTAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.517427
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif AAGAAV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.521364
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif GCTACYGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.552633
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif ACCANC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.546316
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif CCATCGTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.552616
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif ACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.520165
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif GGCGCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.531789
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif CTGYTGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.545946
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif CTTCAYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.537499
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background --motif CACTTKCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.562114
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.19972
Done