******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:326629-327039 1.0000 100 chrVIII:160349-160799 1.0000 100 chrXIV:725831-726385 1.0000 100 chrVII:56517-59169 1.0000 100 chrXI:208561-210247 1.0000 100 chrI:106182-107376 1.0000 100 chrIV:1162561-1164557 1.0000 100 chrXVI:802765-804741 1.0000 100 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chrVII:122067-122522 1.0000 100 chrVII:401373-401751 1.0000 100 chrXV:464258-464659 1.0000 100 chrXV:472899-473608 1.0000 100 chrIV:322209-323583 1.0000 100 chrIV:845696-847201 1.0000 100 chrX:517661-517761 1.0000 100 chrXV:274496-274954 1.0000 100 chrVIII:132886-133325 1.0000 100 chrIX:25771-28633 1.0000 100 chrI:169598-170863 1.0000 100 chrXI:556068-556360 1.0000 100 chrVII:610796-615620 1.0000 100 chrIV:667794-668240 1.0000 100 chrXIII:372233-372741 1.0000 100 chrXV:539658-543886 1.0000 100 chrX:391831-391931 1.0000 100 chrVIII:282170-283164 1.0000 100 chrXII:368683-370264 1.0000 100 chrXIII:115548-117791 1.0000 100 chrXII:1017695-1019430 1.0000 100 chrIV:466243-470797 1.0000 100 chrXIII:752887-754041 1.0000 100 chrXI:302719-303188 1.0000 100 chrV:250120-250496 1.0000 100 chrXIII:224071-224381 1.0000 100 chrIV:812498-813210 1.0000 100 chrXV:505111-505498 1.0000 100 chrIV:1095098-1095661 1.0000 100 chrXII:241627-242017 1.0000 100 chrVII:930723-931214 1.0000 100 chrIV:914004-914718 1.0000 100 chrVII:338531-341853 1.0000 100 chrVII:300791-301807 1.0000 100 chrVI:223949-225313 1.0000 100 chrIII:210362-211071 1.0000 100 chrII:547835-548652 1.0000 100 chrV:406089-408965 1.0000 100 chrV:441812-442595 1.0000 100 chrV:431002-431550 1.0000 100 chrIII:168176-168677 1.0000 100 chrXV:410849-412566 1.0000 100 chrV:99920-100313 1.0000 100 chrII:151232-151626 1.0000 100 chrXVI:868553-869491 1.0000 100 chrIX:438868-439887 1.0000 100 chrII:592885-593273 1.0000 100 chrXVI:445812-449796 1.0000 100 chrII:290386-291484 1.0000 100 chrX:451097-451197 1.0000 100 chrXIII:484257-486403 1.0000 100 chrIV:1062158-1062335 1.0000 100 chrIV:992612-993032 1.0000 100 chrXII:628180-628623 1.0000 100 chrXIII:872713-872908 1.0000 100 chrX:390915-391015 1.0000 100 chrX:378173-378273 1.0000 100 chrII:168531-169693 1.0000 100 chrV:299031-301997 1.0000 100 chrXIV:96028-96639 1.0000 100 chrIV:308026-308389 1.0000 100 chrIX:190684-192496 1.0000 100 chrIV:187673-190125 1.0000 100 chrII:529114-531623 1.0000 100 chrXIII:131669-132072 1.0000 100 chrIV:359377-359857 1.0000 100 chrV:321977-325288 1.0000 100 chrVII:479144-482926 1.0000 100 chrVIII:173901-176037 1.0000 100 chrVII:343860-345218 1.0000 100 chrXV:833397-834280 1.0000 100 chrXII:261278-264061 1.0000 100 chrVIII:442600-443672 1.0000 100 chrVIII:237281-238108 1.0000 100 chrVII:287205-287627 1.0000 100 chrVII:519366-521093 1.0000 100 chrIV:1418279-1419802 1.0000 100 chrII:405693-406157 1.0000 100 chrXV:1060362-1061005 1.0000 100 chrXIII:499058-500687 1.0000 100 chrVIII:34432-36090 1.0000 100 chrVII:648077-648498 1.0000 100 chrIX:197416-197766 1.0000 100 chrIV:1278195-1279025 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.300 C 0.200 G 0.200 T 0.300 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--THP2/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF GRATCGAACCSVKGAYCTYMBGRTTR MEME-1 width = 26 sites = 53 llr = 1042 E-value = 1.6e-192 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMBGRTTR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :45:::aa:1:3128:1:132:5115 pos.-specific C ::2:8:::a7541::68255332::1 probability G a62::a::::43581:1:::273113 matrix T ::1a2::::21:4:1417523::871 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * ****** Relative 1.4 * ****** * * Entropy 1.2 * ****** * ** * (28.4 bits) 1.0 ** ******** ***** * * 0.7 ** ******** ****** * ** 0.5 ** ***************** **** 0.2 ******************** ***** 0.0 -------------------------- Multilevel GGATCGAACCCCGGACCTCCTGATTA consensus AC TGGTA T CTACCG G sequence A G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMBGRTTR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrIV:667794-668240 + 52 2.17e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrV:551123-551547 + 12 2.17e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrII:197294-197849 - 9 2.17e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACG chrIX:183307-183675 + 11 2.17e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXIV:569688-570148 + 11 2.17e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXII:1051896-1052351 + 10 2.17e-12 TCTCTAGCG GGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrVII:122067-122522 - 60 6.72e-12 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrIX:300071-300482 + 14 6.72e-12 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrVI:226554-226937 + 5 6.72e-12 AGGG GGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrV:135179-135678 + 59 6.72e-12 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrX:414816-414916 - 47 6.72e-12 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXI:202855-203236 - 39 6.72e-12 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrII:405693-406157 - 37 2.15e-11 CTCACGATGG GGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXIII:131669-132072 + 17 2.15e-11 CTCACGATGG GGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrIV:568721-569205 - 3 2.15e-11 CTCACGATGG GGGTCGAACCCATAATCTTCTGATTA GA chrXII:214708-215162 + 10 2.82e-11 ACGCAACCG GAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrV:311768-312298 + 52 2.82e-11 GACGCAACCG GAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrXIII:372233-372741 + 20 1.00e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrV:438540-438943 - 45 1.00e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXII:687665-688111 + 33 1.00e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrVIII:85188-85512 + 10 1.00e-10 TTTCGCCCA GGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrIV:1075337-1075719 + 6 1.60e-10 ACCGA GGATCGAACTCGGGACCTTTGCCGTG TGAAGGCAAC chrXVI:560028-560474 + 9 2.01e-10 AATTCTGT GGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrVIII:358301-358737 + 21 2.01e-10 CGAATTCTGT GGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrVII:930723-931214 + 47 3.86e-10 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrX:531555-531655 - 55 3.86e-10 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXVI:572078-572521 - 53 3.86e-10 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVII:845459-845948 - 29 3.86e-10 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrII:326629-327039 + 20 4.28e-10 ATCCAACCGA GGTTCGAACTCGGGATCTTCGCCGTG TAAAGGCGAC chrIV:1095098-1095661 + 53 9.55e-10 CGAACTCTGT GGATCGAACACAGGACCTCCAGATAT CTTGACCAAA chrXVI:856763-857097 - 57 1.16e-09 GACGAGTCCG GAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrVII:774159-774611 - 49 1.16e-09 GACGAGTCCG GAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXIII:321006-321326 + 43 1.16e-09 GACGAGTCCG GAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXV:353895-354296 + 8 1.27e-09 CCAATCG GATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrVII:401373-401751 + 27 1.84e-09 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXIII:290629-291066 - 38 1.84e-09 CCGCTACGGG GAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrV:176910-177395 - 31 1.84e-09 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrX:422697-422797 - 51 2.19e-09 CTCCAGGGGA GGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrIV:359377-359857 - 68 2.40e-09 CATAGGG GGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXVI:768984-769482 + 36 2.40e-09 CCTCATAGGG GGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXV:980502-980997 - 51 2.40e-09 GGCGAGCTGG GAATTGAACCCAGGGCCTCTCGCATG CTTTGTTCCT chrIV:946154-946611 - 31 3.38e-09 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrVI:167282-167684 - 55 3.38e-09 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrV:250120-250496 - 62 4.00e-09 GTCCTACCCG GATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrIV:645035-645376 + 10 4.00e-09 TCCTACCCG GATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrXV:487267-487660 - 62 4.34e-09 ACCCCAGTGA GGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXI:74435-74922 - 32 4.34e-09 ACCCCAGTGA GGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXI:490792-491197 - 59 8.17e-09 TCCCCGCCAG GACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrV:492209-492575 + 22 8.17e-09 TCCCCGCCAG GACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrIV:619769-620183 + 55 8.17e-09 TCCCCGCCAG GACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrVII:1004072-1004399 - 65 2.71e-08 CCACCTGTCA GAATTGAACTAACGACCTTTGCATTA CAAGTGCAAC chrII:642879-643250 + 5 5.05e-08 CTCA GGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrX:517661-517761 + 17 6.76e-08 GCGCCGCTCG GTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMBGRTTR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:667794-668240 2.2e-12 51_[+1]_23 chrV:551123-551547 2.2e-12 11_[+1]_63 chrII:197294-197849 2.2e-12 8_[-1]_66 chrIX:183307-183675 2.2e-12 10_[+1]_64 chrXIV:569688-570148 2.2e-12 10_[+1]_64 chrXII:1051896-1052351 2.2e-12 9_[+1]_65 chrVII:122067-122522 6.7e-12 59_[-1]_15 chrIX:300071-300482 6.7e-12 13_[+1]_61 chrVI:226554-226937 6.7e-12 4_[+1]_70 chrV:135179-135678 6.7e-12 58_[+1]_16 chrX:414816-414916 6.7e-12 46_[-1]_28 chrXI:202855-203236 6.7e-12 38_[-1]_36 chrII:405693-406157 2.1e-11 36_[-1]_38 chrXIII:131669-132072 2.1e-11 16_[+1]_58 chrIV:568721-569205 2.1e-11 2_[-1]_72 chrXII:214708-215162 2.8e-11 9_[+1]_65 chrV:311768-312298 2.8e-11 51_[+1]_23 chrXIII:372233-372741 1e-10 19_[+1]_55 chrV:438540-438943 1e-10 44_[-1]_30 chrXII:687665-688111 1e-10 32_[+1]_42 chrVIII:85188-85512 1e-10 9_[+1]_65 chrIV:1075337-1075719 1.6e-10 5_[+1]_69 chrXVI:560028-560474 2e-10 8_[+1]_66 chrVIII:358301-358737 2e-10 20_[+1]_54 chrVII:930723-931214 3.9e-10 46_[+1]_28 chrX:531555-531655 3.9e-10 54_[-1]_20 chrXVI:572078-572521 3.9e-10 52_[-1]_22 chrVII:845459-845948 3.9e-10 28_[-1]_46 chrII:326629-327039 4.3e-10 19_[+1]_55 chrIV:1095098-1095661 9.6e-10 52_[+1]_22 chrXVI:856763-857097 1.2e-09 56_[-1]_18 chrVII:774159-774611 1.2e-09 48_[-1]_26 chrXIII:321006-321326 1.2e-09 42_[+1]_32 chrXV:353895-354296 1.3e-09 7_[+1]_67 chrVII:401373-401751 1.8e-09 26_[+1]_48 chrXIII:290629-291066 1.8e-09 37_[-1]_37 chrV:176910-177395 1.8e-09 30_[-1]_44 chrX:422697-422797 2.2e-09 50_[-1]_24 chrIV:359377-359857 2.4e-09 67_[-1]_7 chrXVI:768984-769482 2.4e-09 35_[+1]_39 chrXV:980502-980997 2.4e-09 50_[-1]_24 chrIV:946154-946611 3.4e-09 30_[-1]_44 chrVI:167282-167684 3.4e-09 54_[-1]_20 chrV:250120-250496 4e-09 61_[-1]_13 chrIV:645035-645376 4e-09 9_[+1]_65 chrXV:487267-487660 4.3e-09 61_[-1]_13 chrXI:74435-74922 4.3e-09 31_[-1]_43 chrXI:490792-491197 8.2e-09 58_[-1]_16 chrV:492209-492575 8.2e-09 21_[+1]_53 chrIV:619769-620183 8.2e-09 54_[+1]_20 chrVII:1004072-1004399 2.7e-08 64_[-1]_10 chrII:642879-643250 5.1e-08 4_[+1]_70 chrX:517661-517761 6.8e-08 16_[+1]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMBGRTTR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRATCGAACCSVKGAYCTYMBGRTTR width=26 seqs=53 chrIV:667794-668240 ( 52) GGATCGAACCGCTGATCCCCGCGTTA 1 chrV:551123-551547 ( 12) GGATCGAACCGCTGATCCCCGCGTTA 1 chrII:197294-197849 ( 9) GGATCGAACCGCTGATCCCCGCGTTA 1 chrIX:183307-183675 ( 11) GGATCGAACCGCTGATCCCCGCGTTA 1 chrXIV:569688-570148 ( 11) GGATCGAACCGCTGATCCCCGCGTTA 1 chrXII:1051896-1052351 ( 10) GGATCGAACCGCTGATCCCCGCGTTA 1 chrVII:122067-122522 ( 60) GGCTCGAACCCCTAACCTTATGATTA 1 chrIX:300071-300482 ( 14) GGCTCGAACCCCTAACCTTATGATTA 1 chrVI:226554-226937 ( 5) GGCTCGAACCCCTAACCTTATGATTA 1 chrV:135179-135678 ( 59) GGCTCGAACCCCTAACCTTATGATTA 1 chrX:414816-414916 ( 47) GGCTCGAACCCCTAACCTTATGATTA 1 chrXI:202855-203236 ( 39) GGCTCGAACCCCTAACCTTATGATTA 1 chrII:405693-406157 ( 37) GGGTCGAACCCATAATCTTCTGATTA 1 chrXIII:131669-132072 ( 17) GGGTCGAACCCATAATCTTCTGATTA 1 chrIV:568721-569205 ( 3) GGGTCGAACCCATAATCTTCTGATTA 1 chrXII:214708-215162 ( 10) GAATCGAACCGATGACCTCTTCCTTG 1 chrV:311768-312298 ( 52) GAATCGAACCGATGACCTCTTCCTTG 1 chrXIII:372233-372741 ( 20) GGATCGAACTGGGGACGTTCTGCGTG 1 chrV:438540-438943 ( 45) GGATCGAACTGGGGACGTTCTGCGTG 1 chrXII:687665-688111 ( 33) GGATCGAACTGGGGACGTTCTGCGTG 1 chrVIII:85188-85512 ( 10) GGATCGAACTGGGGACGTTCTGCGTG 1 chrIV:1075337-1075719 ( 6) GGATCGAACTCGGGACCTTTGCCGTG 1 chrXVI:560028-560474 ( 9) GGATCGAACACAGGACCTCCAGATAA 1 chrVIII:358301-358737 ( 21) GGATCGAACACAGGACCTCCAGATAA 1 chrVII:930723-931214 ( 47) GAATCGAACCGGGGGCCCAACGATGG 1 chrX:531555-531655 ( 55) GAATCGAACCGGGGGCCCAACGATGG 1 chrXVI:572078-572521 ( 53) GAATCGAACCGGGGGCCCAACGATGG 1 chrVII:845459-845948 ( 29) GAATCGAACCGGGGGCCCAACGATGG 1 chrII:326629-327039 ( 20) GGTTCGAACTCGGGATCTTCGCCGTG 1 chrIV:1095098-1095661 ( 53) GGATCGAACACAGGACCTCCAGATAT 1 chrXVI:856763-857097 ( 57) GAATCGAACCGGAGACCTCTCCCATG 1 chrVII:774159-774611 ( 49) GAATCGAACCGGAGACCTCTCCCATG 1 chrXIII:321006-321326 ( 43) GAATCGAACCGGAGACCTCTCCCATG 1 chrXV:353895-354296 ( 8) GATTTGAACCGATGATCTCCACATTA 1 chrVII:401373-401751 ( 27) GAGTCGAACCCCGGTCTCCACGGTGA 1 chrXIII:290629-291066 ( 38) GAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:176910-177395 ( 31) GAGTCGAACCCCGGTCTCCACGGTGA 1 chrX:422697-422797 ( 51) GGTTCGAACTCTCGACCTTCAGATTA 1 chrIV:359377-359857 ( 68) GGCTCGAACCCCTGACATTTCGGTAT 1 chrXVI:768984-769482 ( 36) GGCTCGAACCCCTGACATTTCGGTAT 1 chrXV:980502-980997 ( 51) GAATTGAACCCAGGGCCTCTCGCATG 1 chrIV:946154-946611 ( 31) GAGTCGAACGCCCGATCTCAAGATTT 1 chrVI:167282-167684 ( 55) GAGTCGAACGCCCGATCTCAAGATTT 1 chrV:250120-250496 ( 62) GATTCGAACCGGGGTTGTCCGGATCA 1 chrIV:645035-645376 ( 10) GATTCGAACCGGGGTTGTCCGGATCA 1 chrXV:487267-487660 ( 62) GGGTTGAACTCACGATCTTGCGATTA 1 chrXI:74435-74922 ( 32) GGGTTGAACTCACGATCTTGCGATTA 1 chrXI:490792-491197 ( 59) GACTTGAACCTGGAATCTTCTGGTTC 1 chrV:492209-492575 ( 22) GACTTGAACCTGGAATCTTCTGGTTC 1 chrIV:619769-620183 ( 55) GACTTGAACCTGGAATCTTCTGGTTC 1 chrVII:1004072-1004399 ( 65) GAATTGAACTAACGACCTTTGCATTA 1 chrII:642879-643250 ( 5) GGATCGAACTAAGGACCAACAGATTT 1 chrX:517661-517761 ( 17) GTTTCGATCCGAGGACATCAGGGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMBGRTTR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 45000 bayes= 9.50612 E= 1.6e-192 -1237 -1237 238 -1237 43 -1237 156 -402 67 11 -3 -144 -1237 -1237 -1237 170 -1237 214 -1237 -103 -1237 -1237 238 -1237 170 -1237 -1237 -1237 167 -1237 -1237 -402 -1237 238 -1237 -1237 -244 186 -235 -57 -303 130 118 -244 -12 90 82 -402 -244 -76 124 29 -44 -1237 201 -1237 140 -1237 -103 -171 -1237 170 -1237 29 -244 201 -76 -244 -402 35 -1237 126 -171 124 -1237 56 -3 130 -235 -71 -103 56 24 14 -1237 56 190 -1237 67 24 56 -1237 -203 -1237 -76 140 -171 -235 -54 126 78 -176 65 -144 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMBGRTTR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 53 E= 1.6e-192 0.000000 0.000000 1.000000 0.000000 0.415094 0.000000 0.566038 0.018868 0.490566 0.207547 0.188679 0.113208 0.000000 0.000000 0.000000 1.000000 0.000000 0.849057 0.000000 0.150943 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.981132 0.000000 0.000000 0.018868 0.000000 1.000000 0.000000 0.000000 0.056604 0.698113 0.037736 0.207547 0.037736 0.471698 0.433962 0.056604 0.283019 0.358491 0.339623 0.018868 0.056604 0.113208 0.452830 0.377358 0.226415 0.000000 0.773585 0.000000 0.811321 0.000000 0.094340 0.094340 0.000000 0.622642 0.000000 0.377358 0.056604 0.773585 0.113208 0.056604 0.018868 0.245283 0.000000 0.735849 0.094340 0.452830 0.000000 0.452830 0.301887 0.471698 0.037736 0.188679 0.150943 0.283019 0.226415 0.339623 0.000000 0.283019 0.716981 0.000000 0.490566 0.226415 0.283019 0.000000 0.075472 0.000000 0.113208 0.811321 0.094340 0.037736 0.132075 0.735849 0.528302 0.056604 0.301887 0.113208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAACCSVKGAYCTYMBGRTTR MEME-1 regular expression -------------------------------------------------------------------------------- G[GA][AC]TCGAAC[CT][CG][CGA][GT][GA]A[CT]C[TC][CT][CA][TCG][GC][AGC]TT[AG] -------------------------------------------------------------------------------- Time 355.32 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCTYWAMCVACTVGGCCAMR MEME-2 width = 21 sites = 64 llr = 1056 E-value = 7.9e-175 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCTYWAMCVACTVGGCCAMR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :111:574:39::323::a53 pos.-specific C 54823:16a4:9:21:a8:41 probability G 55:1::1::21::378::::4 matrix T :::6652::::1a1:::2:11 bits 2.4 * * 2.1 * * 1.9 * * * 1.7 * ** *** Relative 1.4 * * * *** **** Entropy 1.2 * * ** *** **** (23.8 bits) 1.0 *** ** *** ***** 0.7 *** ** ** *** ***** 0.5 *** ********* ****** 0.2 ********************* 0.0 --------------------- Multilevel GGCTTTACCCACTGGGCCAAG consensus CC CA A A AAA CA sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCVACTVGGCCAMR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrV:551123-551547 + 48 7.40e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTGTAA chrXII:734614-734981 - 60 7.40e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAAACT chrVII:738916-739349 - 45 7.40e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTATTT chrIX:183307-183675 + 47 7.40e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAGGAA chrXIV:569688-570148 + 47 7.40e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCACTGT chrXII:1051896-1052351 + 46 7.40e-12 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATGAA chrVIII:132886-133325 + 27 1.37e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCACTTA chrI:182413-182763 + 40 1.37e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCAAAAT chrXIII:259013-259439 + 38 1.37e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATACT chrIV:980805-981242 + 57 1.37e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTCAAT chrIV:437573-437959 - 61 1.37e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTTACT chrXII:592383-592833 + 36 1.64e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrXII:731931-732284 - 38 1.64e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrXV:487267-487660 - 31 8.47e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTAACT chrXIV:102506-102938 - 49 8.47e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTTATA chrXV:228117-228556 - 50 8.47e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTAATA chrIII:127549-127860 - 67 8.47e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCATTTT chrXI:74435-74922 - 1 8.47e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATG chrXV:274496-274954 - 3 1.14e-09 AGCAGGGCAT CGCCTTAACCACTCGGCCACT GG chrV:288283-288710 + 53 1.98e-09 TCAAGTCTGT CGCCTTAACCACTCGGCCATA GTGCCTATCA chrXVI:856763-857097 - 27 2.57e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCGAATC chrVII:774159-774611 - 19 2.57e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCAATTA chrXIII:321006-321326 + 78 2.57e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CG chrX:378173-378273 - 51 2.93e-09 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCTATTA chrXIII:372233-372741 + 56 2.93e-09 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAGGTT chrV:438540-438943 - 14 2.93e-09 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCTAATT chrXII:687665-688111 + 69 2.93e-09 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCTATTA chrVII:73645-74136 + 37 2.93e-09 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTTA chrVIII:85188-85512 + 46 2.93e-09 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAAATT chrVII:412157-412567 + 30 2.93e-09 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAGTTT chrXII:214708-215162 + 45 3.76e-09 GCAAGGGAAG CGCGCTACCAACTGCGCCATG TGCCCTAAAA chrX:58999-59099 + 19 3.76e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTTCTA chrXV:353895-354296 + 43 3.76e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCAGTAA chrIV:359377-359857 - 15 1.31e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXII:628180-628623 - 37 1.31e-08 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrVII:205346-205734 - 36 1.31e-08 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrVII:115291-115736 - 30 1.31e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXIII:504697-505177 - 13 1.31e-08 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrIV:1461539-1462028 + 71 1.31e-08 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTT chrVII:857268-857634 + 65 1.31e-08 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrVII:122067-122522 - 30 4.17e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTAATT chrIX:300071-300482 + 49 4.17e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrVI:226554-226937 + 40 4.17e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCATTTT chrX:414816-414916 - 17 4.17e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTAATT chrXI:202855-203236 - 9 4.17e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTTT chrXVI:560028-560474 + 63 4.97e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTCAAT chrVIII:358301-358737 + 75 4.97e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGC chrXIII:352125-352456 - 45 4.97e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTATA chrVI:157796-158192 + 38 4.97e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTCTA chrXI:490792-491197 - 29 8.18e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAACAAGA chrV:492209-492575 + 57 8.18e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAATAGGA chrIV:992612-993032 - 65 2.76e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTCACA chrVII:930723-931214 + 80 2.76e-07 TGGCAACGTT GGATTTTACCACTAAACCACT chrX:531555-531655 - 27 2.76e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTCACT chrXVI:572078-572521 - 25 2.76e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCGAAGT chrVII:845459-845948 - 1 2.76e-07 TGGCAACGTT GGATTTTACCACTAAACCACT chrX:390915-391015 + 24 2.94e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCACTAT chrX:422697-422797 - 21 2.94e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCATACA chrXV:464258-464659 - 47 3.13e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCTTGTT chrVI:101187-101608 - 34 3.13e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGAATT chrXIII:195937-196396 + 29 3.13e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCTTGTG chrVIII:388754-389185 + 51 3.13e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCATGTA chrXIII:837731-838131 - 52 9.76e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTCAAT chrVI:167282-167684 - 9 9.76e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCVACTVGGCCAMR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:551123-551547 7.4e-12 47_[+2]_32 chrXII:734614-734981 7.4e-12 59_[-2]_20 chrVII:738916-739349 7.4e-12 44_[-2]_35 chrIX:183307-183675 7.4e-12 46_[+2]_33 chrXIV:569688-570148 7.4e-12 46_[+2]_33 chrXII:1051896-1052351 7.4e-12 45_[+2]_34 chrVIII:132886-133325 1.4e-10 26_[+2]_53 chrI:182413-182763 1.4e-10 39_[+2]_40 chrXIII:259013-259439 1.4e-10 37_[+2]_42 chrIV:980805-981242 1.4e-10 56_[+2]_23 chrIV:437573-437959 1.4e-10 60_[-2]_19 chrXII:592383-592833 1.6e-10 35_[+2]_44 chrXII:731931-732284 1.6e-10 37_[-2]_42 chrXV:487267-487660 8.5e-10 30_[-2]_49 chrXIV:102506-102938 8.5e-10 48_[-2]_31 chrXV:228117-228556 8.5e-10 49_[-2]_30 chrIII:127549-127860 8.5e-10 66_[-2]_13 chrXI:74435-74922 8.5e-10 [-2]_79 chrXV:274496-274954 1.1e-09 2_[-2]_77 chrV:288283-288710 2e-09 52_[+2]_27 chrXVI:856763-857097 2.6e-09 26_[-2]_53 chrVII:774159-774611 2.6e-09 18_[-2]_61 chrXIII:321006-321326 2.6e-09 77_[+2]_2 chrX:378173-378273 2.9e-09 50_[-2]_29 chrXIII:372233-372741 2.9e-09 55_[+2]_24 chrV:438540-438943 2.9e-09 13_[-2]_66 chrXII:687665-688111 2.9e-09 68_[+2]_11 chrVII:73645-74136 2.9e-09 36_[+2]_43 chrVIII:85188-85512 2.9e-09 45_[+2]_34 chrVII:412157-412567 2.9e-09 29_[+2]_50 chrXII:214708-215162 3.8e-09 44_[+2]_35 chrX:58999-59099 3.8e-09 18_[+2]_61 chrXV:353895-354296 3.8e-09 42_[+2]_37 chrIV:359377-359857 1.3e-08 14_[-2]_65 chrXII:628180-628623 1.3e-08 36_[-2]_43 chrVII:205346-205734 1.3e-08 35_[-2]_44 chrVII:115291-115736 1.3e-08 29_[-2]_50 chrXIII:504697-505177 1.3e-08 12_[-2]_67 chrIV:1461539-1462028 1.3e-08 70_[+2]_9 chrVII:857268-857634 1.3e-08 64_[+2]_15 chrVII:122067-122522 4.2e-08 29_[-2]_50 chrIX:300071-300482 4.2e-08 48_[+2]_31 chrVI:226554-226937 4.2e-08 39_[+2]_40 chrX:414816-414916 4.2e-08 16_[-2]_63 chrXI:202855-203236 4.2e-08 8_[-2]_71 chrXVI:560028-560474 5e-08 62_[+2]_17 chrVIII:358301-358737 5e-08 74_[+2]_5 chrXIII:352125-352456 5e-08 44_[-2]_35 chrVI:157796-158192 5e-08 37_[+2]_42 chrXI:490792-491197 8.2e-08 28_[-2]_51 chrV:492209-492575 8.2e-08 56_[+2]_23 chrIV:992612-993032 2.8e-07 64_[-2]_15 chrVII:930723-931214 2.8e-07 79_[+2] chrX:531555-531655 2.8e-07 26_[-2]_53 chrXVI:572078-572521 2.8e-07 24_[-2]_55 chrVII:845459-845948 2.8e-07 [-2]_79 chrX:390915-391015 2.9e-07 23_[+2]_56 chrX:422697-422797 2.9e-07 20_[-2]_59 chrXV:464258-464659 3.1e-07 46_[-2]_33 chrVI:101187-101608 3.1e-07 33_[-2]_46 chrXIII:195937-196396 3.1e-07 28_[+2]_51 chrVIII:388754-389185 3.1e-07 50_[+2]_29 chrXIII:837731-838131 9.8e-07 51_[-2]_28 chrVI:167282-167684 9.8e-07 8_[-2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCVACTVGGCCAMR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCTYWAMCVACTVGGCCAMR width=21 seqs=64 chrV:551123-551547 ( 48) GCCTTAACCAACTGGGCCAAG 1 chrXII:734614-734981 ( 60) GCCTTAACCAACTGGGCCAAG 1 chrVII:738916-739349 ( 45) GCCTTAACCAACTGGGCCAAG 1 chrIX:183307-183675 ( 47) GCCTTAACCAACTGGGCCAAG 1 chrXIV:569688-570148 ( 47) GCCTTAACCAACTGGGCCAAG 1 chrXII:1051896-1052351 ( 46) GCCTTAACCAACTGGGCCAAG 1 chrVIII:132886-133325 ( 27) CGCCTTAACCACTCGGCCAAG 1 chrI:182413-182763 ( 40) CGCCTTAACCACTCGGCCAAG 1 chrXIII:259013-259439 ( 38) CGCCTTAACCACTCGGCCAAG 1 chrIV:980805-981242 ( 57) CGCCTTAACCACTCGGCCAAG 1 chrIV:437573-437959 ( 61) CGCCTTAACCACTCGGCCAAG 1 chrXII:592383-592833 ( 36) GCCTTAAACCACTCGGCCAAA 1 chrXII:731931-732284 ( 38) GCCTTAAACCACTCGGCCAAA 1 chrXV:487267-487660 ( 31) GCCTTAACCAACTTGGCCATG 1 chrXIV:102506-102938 ( 49) GCCTTAACCAACTTGGCCATG 1 chrXV:228117-228556 ( 50) GCCTTAACCAACTTGGCCATG 1 chrIII:127549-127860 ( 67) GCCTTAACCAACTTGGCCATG 1 chrXI:74435-74922 ( 1) GCCTTAACCAACTTGGCCATG 1 chrXV:274496-274954 ( 3) CGCCTTAACCACTCGGCCACT 1 chrV:288283-288710 ( 53) CGCCTTAACCACTCGGCCATA 1 chrXVI:856763-857097 ( 27) CGCGCTACCGACTACGCCACA 1 chrVII:774159-774611 ( 19) CGCGCTACCGACTACGCCACA 1 chrXIII:321006-321326 ( 78) CGCGCTACCGACTACGCCACA 1 chrX:378173-378273 ( 51) GCCATAACCGACTAGACCACG 1 chrXIII:372233-372741 ( 56) GCCATAACCGACTAGACCACG 1 chrV:438540-438943 ( 14) GCCATAACCGACTAGACCACG 1 chrXII:687665-688111 ( 69) GCCATAACCGACTAGACCACG 1 chrVII:73645-74136 ( 37) GCCATAACCGACTAGACCACG 1 chrVIII:85188-85512 ( 46) GCCATAACCGACTAGACCACG 1 chrVII:412157-412567 ( 30) GCCATAACCGACTAGACCACG 1 chrXII:214708-215162 ( 45) CGCGCTACCAACTGCGCCATG 1 chrX:58999-59099 ( 19) CGCCTTACCAACTTGGCCATA 1 chrXV:353895-354296 ( 43) CGCCTTACCAACTTGGCCATA 1 chrIV:359377-359857 ( 15) CGCTCTACCAACTGAGCTAAC 1 chrXII:628180-628623 ( 37) GCCTTAGACCGCTCGGCCAAA 1 chrVII:205346-205734 ( 36) GCCTTAGACCGCTCGGCCAAA 1 chrVII:115291-115736 ( 30) CGCTCTACCAACTGAGCTAAC 1 chrXIII:504697-505177 ( 13) GCCTTAGACCGCTCGGCCAAA 1 chrIV:1461539-1462028 ( 71) GCCTTAGACCGCTCGGCCAAA 1 chrVII:857268-857634 ( 65) GCCTTAGACCGCTCGGCCAAA 1 chrVII:122067-122522 ( 30) CGCGCTACCGATTGCGCCAAC 1 chrIX:300071-300482 ( 49) CGCGCTACCGATTGCGCCAAC 1 chrVI:226554-226937 ( 40) CGCGCTACCGATTGCGCCAAC 1 chrX:414816-414916 ( 17) CGCGCTACCGATTGCGCCAAC 1 chrXI:202855-203236 ( 9) CGCGCTACCGATTGCGCCAAC 1 chrXVI:560028-560474 ( 63) CGCTCTCCCAACTGAGCTAAA 1 chrVIII:358301-358737 ( 75) CGCTCTCCCAACTGAGCTAAA 1 chrXIII:352125-352456 ( 45) CGCTCTCCCAACTGAGCTAAA 1 chrVI:157796-158192 ( 38) CGCTCTCCCAACTGAGCTAAA 1 chrXI:490792-491197 ( 29) CGCCGTGACCATTGGGCCACG 1 chrV:492209-492575 ( 57) CGCCGTGACCATTGGGCCACG 1 chrIV:992612-993032 ( 65) GGATTTTACCACTAAACCACT 1 chrVII:930723-931214 ( 80) GGATTTTACCACTAAACCACT 1 chrX:531555-531655 ( 27) GGATTTTACCACTAAACCACT 1 chrXVI:572078-572521 ( 25) GGATTTTACCACTAAACCACT 1 chrVII:845459-845948 ( 1) GGATTTTACCACTAAACCACT 1 chrX:390915-391015 ( 24) CGCTCTTCCTACTGAGCTACT 1 chrX:422697-422797 ( 21) CGCTCTTCCTACTGAGCTACT 1 chrXV:464258-464659 ( 47) GAATCATACCACTAGACCACA 1 chrVI:101187-101608 ( 34) GAATCATACCACTAGACCACA 1 chrXIII:195937-196396 ( 29) GAATCATACCACTAGACCACA 1 chrVIII:388754-389185 ( 51) GAATCATACCACTAGACCACA 1 chrXIII:837731-838131 ( 52) CCTTAAACCAACTTGGCTACC 1 chrVI:167282-167684 ( 9) CCTTAAACCAACTTGGCTACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCVACTVGGCCAMR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.54882 E= 7.9e-175 -1264 129 147 -1264 -230 113 142 -1264 -113 211 -1264 -330 -149 -16 -45 91 -330 77 -262 98 65 -1264 -1264 74 109 -162 -81 -84 34 167 -1264 -1264 -1264 238 -1264 -1264 16 102 29 -330 158 -1264 -130 -1264 -1264 221 -1264 -149 -1264 -1264 -1264 170 -5 19 84 -113 -60 -45 177 -1264 -30 -1264 196 -1264 -1264 238 -1264 -1264 -1264 213 -1264 -98 170 -1264 -1264 -1264 56 108 -1264 -113 9 -45 108 -130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCVACTVGGCCAMR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 64 E= 7.9e-175 0.000000 0.468750 0.531250 0.000000 0.062500 0.421875 0.515625 0.000000 0.140625 0.828125 0.000000 0.031250 0.109375 0.171875 0.140625 0.578125 0.031250 0.328125 0.031250 0.609375 0.484375 0.000000 0.000000 0.515625 0.656250 0.062500 0.109375 0.171875 0.390625 0.609375 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.343750 0.390625 0.234375 0.031250 0.921875 0.000000 0.078125 0.000000 0.000000 0.890625 0.000000 0.109375 0.000000 0.000000 0.000000 1.000000 0.296875 0.218750 0.343750 0.140625 0.203125 0.140625 0.656250 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.843750 0.000000 0.156250 1.000000 0.000000 0.000000 0.000000 0.453125 0.406250 0.000000 0.140625 0.328125 0.140625 0.406250 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCVACTVGGCCAMR MEME-2 regular expression -------------------------------------------------------------------------------- [GC][GC]CT[TC][TA]A[CA]C[CAG]ACT[GAC][GA][GA]CCA[AC][GA] -------------------------------------------------------------------------------- Time 674.77 secs. ******************************************************************************** ******************************************************************************** MOTIF KATAGTGTARTGGTTAKCAY MEME-3 width = 20 sites = 22 llr = 424 E-value = 3.8e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif KATAGTGTARTGGTTAKCAY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :7:a::1:a6:::::a:3a: pos.-specific C 1:::::::::3::33::6:6 probability G 4:::a:6::4:aa:::4::: matrix T 52a::a3a::7::77:61:4 bits 2.4 * ** 2.1 * ** 1.9 * ** 1.7 **** * ** * * Relative 1.4 **** ** ** * * Entropy 1.2 **** ** ** * ** (27.8 bits) 1.0 ****************** 0.7 ****************** 0.5 ******************** 0.2 ******************** 0.0 -------------------- Multilevel TATAGTGTAATGGTTATCAC consensus G T GC CC GA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARTGGTTAKCAY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrV:250120-250496 + 33 1.14e-11 GTACTGGTCC TATAGTGTAGTGGTTATCAC TTTCGGTTTT chrIV:520759-521167 + 64 1.14e-11 TTTAGGGTCC TATAGTGTAGTGGTTATCAC TTTCGGTTTT chrVIII:134129-134517 + 53 1.14e-11 GTTCCGGTCC TATAGTGTAGTGGTTATCAC TTTCGGTTTT chrIV:645035-645376 - 45 1.14e-11 GTTACGGTCC TATAGTGTAGTGGTTATCAC TTTCGGTTTT chrVII:401373-401751 - 62 5.03e-11 TTGTTTCCGA TATAGTGTAACGGCTATCAC ATCACGCTTT chrXIII:290629-291066 + 9 5.03e-11 TAATCCGA TATAGTGTAACGGCTATCAC ATCACGCTTT chrVII:541564-542122 + 62 5.03e-11 TACCATCCGA TATAGTGTAACGGCTATCAC ATCACGCTTT chrV:176910-177395 + 2 5.03e-11 A TATAGTGTAACGGCTATCAC ATCACGCTTT chrIX:370227-370606 + 56 5.03e-11 TATAATCCGA TATAGTGTAACGGCTATCAC ATCACGCTTT chrXIV:96028-96639 - 5 4.95e-10 CACATGGGCG GTTAGTGTAGTGGTTATCAT CCCA chrVII:779415-779838 + 45 4.95e-10 ACCCCGGGCG GTTAGTGTAGTGGTTATCAT CCCACCCTTC chrIX:197416-197766 + 56 1.36e-09 TCAAATCCGA TGTAGTGTAACGGCTATCAC ATCACGTTCT chrIV:1075337-1075719 - 42 1.36e-09 ATATTGTTCC AATAGTGTAGCGGCTATCAC GTTGCCTTCA chrVII:531439-531775 + 58 3.04e-09 TTACTTCCGT GATAGTTTAATGGTCAGAAT GGGCGCTTGT chrX:204551-204651 + 30 3.04e-09 AAAAATCCGT GATAGTTTAATGGTCAGAAT GGGCGCTTGT chrX:374219-374319 - 33 3.04e-09 TTTCTTCCGT GATAGTTTAATGGTCAGAAT GGGCGCTTGT chrIV:568721-569205 + 56 3.04e-09 TTTCTTCCGT GATAGTTTAATGGTCAGAAT GGGCGCTTGT chrXII:426944-427391 + 20 3.04e-09 TCTTATCCGT GATAGTTTAATGGTCAGAAT GGGCGCTTGT chrXI:513230-513577 - 26 3.04e-09 AACGTTCCGT GATAGTTTAATGGTCAGAAT GGGCGCTTGT chrXII:816881-820342 + 53 8.98e-09 ATTATGCTCC TCTAGTGCAATGGTTAGCAT GCATTCTTCC chrVIII:62593-62918 + 55 1.76e-08 CATATGCCAT CTTAGTATAGTGGTTAGTAC ACATCGTTGT chrVII:110454-110897 - 47 1.76e-08 TACCTGCCAT CTTAGTATAGTGGTTAGTAC ACATCGTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARTGGTTAKCAY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:250120-250496 1.1e-11 32_[+3]_48 chrIV:520759-521167 1.1e-11 63_[+3]_17 chrVIII:134129-134517 1.1e-11 52_[+3]_28 chrIV:645035-645376 1.1e-11 44_[-3]_36 chrVII:401373-401751 5e-11 61_[-3]_19 chrXIII:290629-291066 5e-11 8_[+3]_72 chrVII:541564-542122 5e-11 61_[+3]_19 chrV:176910-177395 5e-11 1_[+3]_79 chrIX:370227-370606 5e-11 55_[+3]_25 chrXIV:96028-96639 4.9e-10 4_[-3]_76 chrVII:779415-779838 4.9e-10 44_[+3]_36 chrIX:197416-197766 1.4e-09 55_[+3]_25 chrIV:1075337-1075719 1.4e-09 41_[-3]_39 chrVII:531439-531775 3e-09 57_[+3]_23 chrX:204551-204651 3e-09 29_[+3]_51 chrX:374219-374319 3e-09 32_[-3]_48 chrIV:568721-569205 3e-09 55_[+3]_25 chrXII:426944-427391 3e-09 19_[+3]_61 chrXI:513230-513577 3e-09 25_[-3]_55 chrXII:816881-820342 9e-09 52_[+3]_28 chrVIII:62593-62918 1.8e-08 54_[+3]_26 chrVII:110454-110897 1.8e-08 46_[-3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARTGGTTAKCAY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KATAGTGTARTGGTTAKCAY width=20 seqs=22 chrV:250120-250496 ( 33) TATAGTGTAGTGGTTATCAC 1 chrIV:520759-521167 ( 64) TATAGTGTAGTGGTTATCAC 1 chrVIII:134129-134517 ( 53) TATAGTGTAGTGGTTATCAC 1 chrIV:645035-645376 ( 45) TATAGTGTAGTGGTTATCAC 1 chrVII:401373-401751 ( 62) TATAGTGTAACGGCTATCAC 1 chrXIII:290629-291066 ( 9) TATAGTGTAACGGCTATCAC 1 chrVII:541564-542122 ( 62) TATAGTGTAACGGCTATCAC 1 chrV:176910-177395 ( 2) TATAGTGTAACGGCTATCAC 1 chrIX:370227-370606 ( 56) TATAGTGTAACGGCTATCAC 1 chrXIV:96028-96639 ( 5) GTTAGTGTAGTGGTTATCAT 1 chrVII:779415-779838 ( 45) GTTAGTGTAGTGGTTATCAT 1 chrIX:197416-197766 ( 56) TGTAGTGTAACGGCTATCAC 1 chrIV:1075337-1075719 ( 42) AATAGTGTAGCGGCTATCAC 1 chrVII:531439-531775 ( 58) GATAGTTTAATGGTCAGAAT 1 chrX:204551-204651 ( 30) GATAGTTTAATGGTCAGAAT 1 chrX:374219-374319 ( 33) GATAGTTTAATGGTCAGAAT 1 chrIV:568721-569205 ( 56) GATAGTTTAATGGTCAGAAT 1 chrXII:426944-427391 ( 20) GATAGTTTAATGGTCAGAAT 1 chrXI:513230-513577 ( 26) GATAGTTTAATGGTCAGAAT 1 chrXII:816881-820342 ( 53) TCTAGTGCAATGGTTAGCAT 1 chrVIII:62593-62918 ( 55) CTTAGTATAGTGGTTAGTAC 1 chrVII:110454-110897 ( 47) CTTAGTATAGTGGTTAGTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARTGGTTAKCAY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 10.6609 E= 3.8e-052 -276 -108 92 70 124 -208 -208 -76 -1110 -1110 -1110 170 170 -1110 -1110 -1110 -1110 -1110 238 -1110 -1110 -1110 -1110 170 -176 -1110 173 -17 -1110 -208 -1110 163 170 -1110 -1110 -1110 94 -1110 109 -1110 -1110 73 -1110 115 -1110 -1110 238 -1110 -1110 -1110 238 -1110 -1110 73 -1110 115 -1110 51 -1110 124 170 -1110 -1110 -1110 -1110 -1110 109 94 -17 173 -1110 -176 170 -1110 -1110 -1110 -1110 162 -1110 41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARTGGTTAKCAY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 22 E= 3.8e-052 0.045455 0.090909 0.363636 0.500000 0.727273 0.045455 0.045455 0.181818 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.090909 0.000000 0.636364 0.272727 0.000000 0.045455 0.000000 0.954545 1.000000 0.000000 0.000000 0.000000 0.590909 0.000000 0.409091 0.000000 0.000000 0.318182 0.000000 0.681818 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.318182 0.000000 0.681818 0.000000 0.272727 0.000000 0.727273 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.409091 0.590909 0.272727 0.636364 0.000000 0.090909 1.000000 0.000000 0.000000 0.000000 0.000000 0.590909 0.000000 0.409091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARTGGTTAKCAY MEME-3 regular expression -------------------------------------------------------------------------------- [TG]ATAGT[GT]TA[AG][TC]GG[TC][TC]A[TG][CA]A[CT] -------------------------------------------------------------------------------- Time 987.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:326629-327039 1.32e-07 19_[+1(4.28e-10)]_10_[+1(4.80e-05)]_\ 19 chrVIII:160349-160799 5.86e-01 100 chrXIV:725831-726385 3.27e-01 100 chrVII:56517-59169 8.68e-01 100 chrXI:208561-210247 3.44e-01 100 chrI:106182-107376 1.47e-01 100 chrIV:1162561-1164557 7.79e-01 100 chrXVI:802765-804741 7.76e-01 100 chrXIII:725712-730761 4.39e-01 100 chrVII:398786-400550 3.12e-01 100 chrVII:291234-291883 5.56e-01 100 chrXI:333966-334958 7.70e-01 100 chrIV:489982-491260 3.53e-01 100 chrIII:15273-16771 2.27e-02 100 chrXVI:340548-341010 4.58e-01 100 chrIV:808727-810656 7.17e-01 100 chrXI:513230-513577 5.48e-08 25_[-3(3.04e-09)]_55 chrIX:68210-68537 5.05e-01 100 chrXIV:453741-456351 8.88e-01 100 chrIV:645035-645376 1.34e-14 9_[+1(4.00e-09)]_9_[-3(1.14e-11)]_\ 36 chrXII:424178-424468 8.87e-01 100 chrIX:1-254 9.59e-01 100 chrII:165098-165399 4.76e-01 100 chrXI:394241-396051 8.02e-01 100 chrXVI:153925-155883 6.31e-01 100 chrVII:281325-283342 1.66e-01 100 chrXV:727917-732428 1.63e-01 100 chrXII:84152-84423 9.85e-01 100 chrVII:783256-784919 9.99e-01 100 chrXV:832280-832727 4.65e-01 100 chrXIII:146583-147782 5.82e-01 100 chrIX:339619-341901 7.34e-02 100 chrXVI:530163-533736 5.95e-01 100 chrII:332325-332790 8.64e-01 100 chrIV:472677-473282 6.67e-01 100 chrXV:651931-652088 9.08e-01 100 chrIV:525669-527540 4.25e-02 100 chrXIII:799238-801489 6.22e-01 100 chrVI:157796-158192 2.79e-04 37_[+2(4.97e-08)]_42 chrXII:731931-732284 1.32e-07 37_[-2(1.64e-10)]_42 chrVIII:109685-110515 6.68e-01 100 chrX:411065-411165 4.30e-01 100 chrVII:110454-110897 4.19e-08 11_[+1(7.60e-06)]_9_[-3(1.76e-08)]_\ 34 chrVIII:230077-230957 8.19e-01 100 chrXII:888522-892420 9.88e-01 100 chrXIII:267691-268317 8.24e-01 100 chrXIV:172427-174605 8.37e-01 100 chrXIV:575087-575928 9.19e-01 100 chrVII:227286-228252 8.27e-01 100 chrXVI:745442-746295 7.99e-02 100 chrXIII:5314-5796 7.31e-01 100 chrIV:1151534-1153011 7.93e-01 100 chrXV:577522-578001 3.85e-01 100 chrXIII:225362-225757 1.81e-01 100 chrII:87972-88605 9.73e-01 100 chrXI:484813-487041 9.85e-01 100 chrX:208256-208356 4.30e-01 100 chrV:504358-505118 9.11e-01 100 chrXVI:228749-229235 8.20e-02 73_[+1(8.99e-05)]_1 chrV:423105-425387 7.81e-01 100 chrXI:202855-203236 9.82e-13 8_[-2(4.17e-08)]_9_[-1(6.72e-12)]_\ 36 chrXII:816881-820342 2.52e-06 52_[+3(8.98e-09)]_28 chrXI:590790-592079 9.58e-01 100 chrX:608571-608671 2.76e-01 100 chrII:172971-175293 5.08e-01 100 chrIV:508320-510338 6.59e-01 100 chrVI:167282-167684 1.47e-08 8_[-2(9.76e-07)]_25_[-1(3.38e-09)]_\ 20 chrXIII:352125-352456 1.10e-04 44_[-2(4.97e-08)]_35 chrXIV:61625-62920 6.17e-01 100 chrXII:1051896-1052351 2.03e-16 9_[+1(2.17e-12)]_10_[+2(7.40e-12)]_\ 34 chrXII:445219-446832 9.22e-02 100 chrVII:845459-845948 1.06e-10 [-2(2.76e-07)]_7_[-1(3.86e-10)]_46 chrX:690594-690694 2.42e-01 100 chrXI:411342-414564 7.44e-01 100 chrXII:934192-936294 7.05e-01 100 chrII:477063-477775 3.13e-02 68_[-2(1.54e-05)]_11 chrIX:370227-370606 3.90e-07 55_[+3(5.03e-11)]_25 chrXII:327450-329038 6.10e-01 100 chrIV:555380-556353 9.86e-01 100 chrXII:47635-49096 8.25e-01 100 chrII:254883-255676 6.21e-01 100 chrXVI:404559-407903 5.41e-01 100 chrV:311768-312298 4.03e-07 51_[+1(2.82e-11)]_23 chrXIV:510870-512435 4.63e-01 100 chrVII:603487-604734 9.69e-01 100 chrXII:242404-243711 2.18e-01 100 chrXVI:310672-312859 9.55e-01 100 chrXII:867374-869065 9.40e-01 100 chrXV:918334-920459 2.31e-01 100 chrVII:857268-857634 1.13e-04 64_[+2(1.31e-08)]_15 chrV:443078-443530 8.85e-01 100 chrX:523748-523848 3.72e-01 100 chrXV:1027851-1030842 4.88e-01 100 chrVII:561432-561929 3.50e-01 100 chrXV:80416-82918 9.69e-01 100 chrVII:412157-412567 1.15e-05 29_[+2(2.93e-09)]_50 chrXVI:193520-194636 3.68e-01 100 chrXII:426944-427391 2.15e-08 19_[+3(3.04e-09)]_61 chrXVI:794527-794818 9.96e-01 100 chrVIII:85188-85512 1.96e-12 9_[+1(1.00e-10)]_10_[+2(2.93e-09)]_\ 34 chrV:138463-140892 3.22e-01 100 chrII:415507-415869 7.32e-01 100 chrXVI:572078-572521 1.06e-10 24_[-2(2.76e-07)]_7_[-1(3.86e-10)]_\ 22 chrXII:947075-947295 6.06e-01 100 chrXII:132228-134244 5.40e-02 18_[+3(2.93e-05)]_62 chrII:371892-372627 9.94e-01 100 chrVII:824541-827410 4.79e-01 100 chrXVI:897321-898885 6.76e-01 100 chrXII:951040-953754 3.38e-01 100 chrXIV:716002-717953 2.88e-01 100 chrXII:1064737-1065369 3.36e-01 100 chrIV:915547-916303 3.39e-01 100 chrV:117646-118279 6.44e-01 100 chrV:362209-362501 6.66e-01 100 chrIV:1301660-1302614 8.49e-01 100 chrXVI:915485-918083 8.76e-01 100 chrXV:493738-494858 9.01e-01 100 chrXII:844552-846008 4.78e-01 100 chrIV:835756-836247 9.54e-01 100 chrXV:353895-354296 6.77e-12 7_[+1(1.27e-09)]_9_[+2(3.76e-09)]_\ 37 chrVII:364138-364433 8.34e-01 100 chrXIII:532926-534453 6.77e-01 100 chrVII:878602-878999 3.63e-01 100 chrIII:315677-315956 2.07e-01 100 chrIX:248661-249291 3.59e-01 100 chrVII:94282-94558 4.18e-01 100 chrXV:980502-980997 1.07e-05 50_[-1(2.40e-09)]_24 chrXIII:690333-690938 9.97e-01 100 chrXV:827732-830377 6.36e-01 100 chrX:157429-157529 1.90e-01 100 chrVII:277063-277379 3.98e-01 100 chrX:58999-59099 1.95e-07 18_[+2(3.76e-09)]_26_[+3(1.13e-05)]_\ 15 chrII:76621-79887 1.78e-01 100 chrXI:617722-619240 9.93e-01 100 chrIII:280911-286501 3.18e-01 100 chrIV:204960-210558 8.91e-01 100 chrXIV:256362-257082 9.91e-01 100 chrIV:392509-392921 6.41e-01 100 chrVII:73645-74136 1.96e-12 [+1(1.00e-10)]_10_[+2(2.93e-09)]_43 chrXI:140848-142772 4.97e-01 100 chrX:745276-745376 1.26e-01 100 chrIV:1441156-1443144 9.86e-01 100 chrII:481185-483062 6.19e-01 100 chrXV:593813-594644 9.88e-01 100 chrVIII:517685-519095 4.08e-01 100 chrXIII:507125-509029 7.42e-01 100 chrVI:210476-210893 1.44e-03 47_[+2(9.76e-07)]_32 chrX:140729-140829 8.00e-01 100 chrX:415845-415945 8.68e-02 100 chrVII:648932-650266 8.37e-01 100 chrXIII:837731-838131 3.65e-05 18_[+3(2.37e-05)]_13_[-2(9.76e-07)]_\ 28 chrVII:555174-557476 2.80e-01 100 chrII:578826-580992 9.11e-01 100 chrXII:897710-899911 6.91e-01 100 chrVII:828462-828956 9.75e-01 100 chrIV:1356844-1358485 4.11e-01 100 chrVII:53603-53913 7.61e-02 100 chrVIII:103845-104256 9.77e-01 100 chrXVI:303163-304334 9.94e-01 100 chrIII:229511-231391 8.59e-02 100 chrII:218357-220997 8.53e-01 100 chrXIII:124322-126300 3.62e-01 100 chrII:714649-715976 8.14e-01 100 chrV:396181-396593 3.96e-01 100 chrI:3-974 9.25e-01 100 chrXII:41347-44387 7.93e-01 100 chrII:491017-492310 4.89e-01 100 chrVII:704057-705524 4.18e-01 100 chrVIII:562257-562583 9.96e-01 100 chrXIV:648182-650895 8.97e-03 100 chrVIII:148929-149262 2.28e-01 100 chrIV:27-368 4.86e-02 100 chrX:651974-652074 7.95e-01 100 chrXIII:887052-891895 5.60e-01 100 chrVII:661555-661932 4.08e-01 100 chrXIV:330790-331147 2.47e-01 100 chrVIII:410559-410855 2.51e-01 100 chrXIV:232915-233249 9.51e-01 100 chrVIII:358301-358737 4.45e-11 20_[+1(2.01e-10)]_28_[+2(4.97e-08)]_\ 5 chrIX:257341-257921 9.53e-01 100 chrXII:708043-710092 4.45e-01 100 chrXVI:819131-821013 7.10e-02 28_[-1(3.33e-05)]_46 chrIV:1461539-1462028 6.86e-05 70_[+2(1.31e-08)]_9 chrIV:779499-780429 4.75e-02 100 chrIII:177126-178758 6.74e-01 100 chrXV:547570-549584 7.04e-01 100 chrX:296897-296997 8.28e-01 100 chrXIV:625998-626965 7.25e-01 100 chrVIII:268073-269674 2.33e-01 100 chrXII:214708-215162 3.85e-13 9_[+1(2.82e-11)]_9_[+2(3.76e-09)]_\ 35 chrXII:69830-72660 9.30e-01 100 chrVII:315743-316746 9.03e-01 100 chrXII:522175-522466 6.73e-01 100 chrXI:112728-114570 9.67e-01 100 chrXVI:64526-66289 9.72e-01 100 chrVII:517395-519029 8.58e-01 100 chrIII:48482-49624 1.43e-01 100 chrVIII:462890-463876 2.93e-01 100 chrVII:640907-642068 1.42e-01 100 chrVIII:161400-163459 8.87e-01 100 chrXIV:569688-570148 2.03e-16 10_[+1(2.17e-12)]_10_[+2(7.40e-12)]_\ 33 chrXIII:625852-627062 9.52e-01 100 chrIV:619769-620183 1.03e-04 54_[+1(8.17e-09)]_20 chrXIV:240957-241731 9.27e-01 100 chrV:460491-461325 7.62e-01 100 chrXI:74435-74922 3.96e-11 [-2(8.47e-10)]_10_[-1(4.34e-09)]_43 chrIV:1443606-1445031 6.65e-01 100 chrIII:191287-192551 7.38e-01 100 chrV:378530-381450 7.21e-01 100 chrXIV:277454-279932 6.42e-01 100 chrXVI:371132-373262 6.52e-01 100 chrXII:592383-592833 4.85e-07 35_[+2(1.64e-10)]_44 chrXVI:302621-302961 6.35e-01 100 chrII:658523-660336 3.14e-01 100 chrXV:74661-77435 2.48e-01 100 chrXII:624894-626066 3.06e-01 100 chrXII:587271-588010 7.51e-01 100 chrXVI:199300-202045 8.80e-01 100 chrIV:381754-384789 1.22e-02 100 chrXV:1-970 9.11e-01 100 chrXIII:321006-321326 7.04e-12 42_[+1(1.16e-09)]_9_[+2(2.57e-09)]_\ 2 chrX:75949-76049 6.87e-01 100 chrII:181337-181632 9.42e-01 100 chrXV:968138-968433 6.73e-01 100 chrVII:1004072-1004399 1.05e-05 64_[-1(2.71e-08)]_10 chrXIII:511336-512193 5.91e-01 100 chrII:80891-83852 7.80e-01 100 chrIII:59424-60919 4.00e-01 100 chrIV:579055-580733 9.53e-02 100 chrXII:687665-688111 1.75e-12 32_[+1(1.00e-10)]_10_[+2(2.93e-09)]_\ 11 chrV:266225-268095 9.58e-01 100 chrXV:812141-813099 1.88e-01 100 chrV:354734-355358 5.66e-01 100 chrXV:619648-624769 5.78e-01 100 chrXI:163332-164353 1.86e-01 100 chrIV:355018-356931 1.71e-01 100 chrXII:919027-923731 1.17e-01 100 chrV:130785-131339 6.25e-01 100 chrIV:570987-573943 3.13e-01 100 chrXIII:698210-700841 7.08e-01 100 chrX:414816-414916 9.82e-13 16_[-2(4.17e-08)]_9_[-1(6.72e-12)]_\ 28 chrIII:127549-127860 1.84e-05 66_[-2(8.47e-10)]_13 chrVIII:74938-76501 3.14e-01 100 chrIX:128433-129989 2.85e-01 100 chrXV:199917-201773 1.35e-01 100 chrIX:254208-254559 3.71e-01 100 chrXVI:730937-731335 5.70e-01 100 chrVII:319608-320118 9.70e-03 1_[-1(7.60e-06)]_73 chrXV:286536-288388 2.06e-04 64_[+2(5.07e-06)]_15 chrIV:1075337-1075719 1.00e-13 5_[+1(1.60e-10)]_10_[-3(1.36e-09)]_\ 39 chrX:153132-153232 5.65e-01 100 chrX:439403-439503 8.59e-01 100 chrXI:382194-382471 3.01e-02 100 chrIV:1256906-1257282 7.48e-05 10_[-3(1.17e-06)]_70 chrXII:399969-403293 5.92e-01 100 chrIV:1021121-1022134 6.95e-01 100 chrXVI:692620-694729 4.64e-02 100 chrXVI:184808-187332 7.92e-01 100 chrX:227782-227882 5.48e-01 100 chrXII:662995-664519 3.50e-01 100 chrXV:228117-228556 1.24e-05 49_[-2(8.47e-10)]_30 chrIV:862811-864770 5.38e-01 100 chrXV:945907-948767 7.30e-01 100 chrXV:976167-978246 3.41e-01 100 chrXII:673454-674422 6.34e-01 100 chrIII:31882-34254 5.16e-01 100 chrXVI:470331-472394 7.64e-01 100 chrXIII:206007-207595 8.82e-01 100 chrXIV:88087-89688 7.50e-01 100 chrXVI:560028-560474 4.45e-11 8_[+1(2.01e-10)]_28_[+2(4.97e-08)]_\ 17 chrX:408198-408298 2.23e-01 100 chrXII:198691-199995 2.74e-01 100 chrXII:912319-913158 6.86e-01 100 chrVII:362139-363746 7.82e-01 100 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chrII:89668-89926 5.14e-01 100 chrVIII:372444-373793 6.32e-01 100 chrXII:796404-797369 3.96e-01 100 chrXV:901439-901656 5.37e-01 100 chrVII:115291-115736 8.59e-06 29_[-2(1.31e-08)]_50 chrXII:798489-801468 7.18e-01 100 chrX:442433-442533 3.26e-01 100 chrXI:109381-111316 8.60e-01 100 chrXII:1037547-1041325 4.49e-01 100 chrXI:217490-218668 1.18e-01 100 chrXVI:822768-824351 3.13e-01 100 chrVI:132704-134490 9.09e-01 100 chrII:44991-45353 7.37e-01 100 chrVII:475928-478659 8.34e-01 100 chrI:71759-73638 4.80e-01 100 chrVII:695608-697562 7.22e-01 100 chrXVI:856763-857097 7.04e-12 26_[-2(2.57e-09)]_9_[-1(1.16e-09)]_\ 18 chrIV:1351816-1352703 6.43e-01 100 chrIV:946154-946611 1.24e-05 30_[-1(3.38e-09)]_44 chrXV:252821-253510 3.14e-01 100 chrV:66934-68820 3.43e-02 100 chrXIII:651376-652898 6.45e-01 100 chrI:229276-230195 1.46e-01 100 chrIV:1489031-1489895 1.00e+00 100 chrIV:980805-981242 3.27e-06 56_[+2(1.37e-10)]_23 chrVII:997825-998705 2.14e-01 100 chrXIV:289542-292328 9.86e-01 100 chrXV:92113-94817 9.56e-01 100 chrXII:964202-965186 9.93e-01 100 chrXIII:259013-259439 2.75e-06 37_[+2(1.37e-10)]_42 chrIII:82383-82758 3.66e-01 100 chrXV:487267-487660 4.07e-11 30_[-2(8.47e-10)]_10_[-1(4.34e-09)]_\ 13 chrXIII:296794-298859 8.83e-01 100 chrI:64440-67553 4.02e-01 100 chrVII:787028-787947 4.60e-01 100 chrXV:281977-284890 9.26e-01 100 chrIV:491649-492693 1.13e-01 100 chrVIII:491933-493813 2.91e-01 100 chrVIII:62593-62918 1.37e-05 54_[+3(1.76e-08)]_26 chrXI:46705-46974 1.50e-01 100 chrXIII:222090-223710 8.55e-01 100 chrXV:1003988-1004904 7.09e-01 100 chrII:562692-564437 7.86e-01 100 chrVII:738916-739349 1.46e-07 44_[-2(7.40e-12)]_35 chrIV:1401271-1401584 9.80e-01 100 chrXV:407688-408154 9.60e-01 100 chrXII:734614-734981 4.25e-08 59_[-2(7.40e-12)]_20 chrXII:579141-581295 7.08e-01 100 chrV:122123-122860 9.55e-01 100 chrXVI:642274-643546 8.71e-01 100 chrX:647800-647900 2.50e-01 100 chrXVI:432796-434285 6.53e-01 100 chrXIV:104600-105260 2.44e-01 100 chrIII:169414-169891 5.93e-01 100 chrV:69119-69309 6.66e-02 100 chrXIII:356575-357085 7.49e-01 100 chrXVI:748773-751342 8.44e-01 100 chrV:551123-551547 2.03e-16 11_[+1(2.17e-12)]_10_[+2(7.40e-12)]_\ 32 chrVII:866031-867025 7.25e-01 100 chrII:556256-558526 7.19e-01 100 chrXVI:160296-162324 8.88e-01 100 chrV:252480-253754 8.83e-01 100 chrX:204551-204651 2.15e-08 29_[+3(3.04e-09)]_51 chrXII:128063-130278 2.44e-01 100 chrVII:531439-531775 4.51e-08 57_[+3(3.04e-09)]_23 chrXV:612597-616440 9.16e-01 100 chrVII:254134-254723 5.91e-01 100 chrX:422697-422797 3.08e-09 20_[-2(2.94e-07)]_9_[-1(2.19e-09)]_\ 24 chrXIV:229516-232695 7.58e-01 100 chrIX:296012-298402 4.76e-01 100 chrXVI:134336-135794 8.94e-02 100 chrI:182413-182763 2.81e-06 39_[+2(1.37e-10)]_40 chrIV:1267756-1269573 1.05e-01 100 chrIX:315891-318275 9.41e-01 100 chrXIV:267533-268980 2.11e-01 100 chrVII:205346-205734 1.11e-04 35_[-2(1.31e-08)]_44 chrXII:962176-963281 3.97e-01 100 chrX:73385-73485 8.91e-01 100 chrVIII:385205-386917 9.58e-01 100 chrXV:649583-651775 8.68e-01 100 chrVII:1000346-1000587 4.10e-01 100 chrXIV:24187-27518 1.22e-01 100 chrI:138950-139741 2.61e-01 100 chrVII:183292-184333 2.63e-01 100 chrII:740446-741258 7.06e-01 100 chrXV:804820-806627 8.22e-01 100 chrVII:1019328-1021826 2.01e-01 100 chrVII:122067-122522 9.82e-13 29_[-2(4.17e-08)]_9_[-1(6.72e-12)]_\ 15 chrVII:401373-401751 4.19e-13 26_[+1(1.84e-09)]_9_[-3(5.03e-11)]_\ 19 chrXV:464258-464659 3.47e-04 46_[-2(3.13e-07)]_33 chrXV:472899-473608 3.37e-02 100 chrIV:322209-323583 7.26e-01 100 chrIV:845696-847201 9.03e-01 100 chrX:517661-517761 7.12e-05 16_[+1(6.76e-08)]_58 chrXV:274496-274954 5.86e-06 2_[-2(1.14e-09)]_77 chrVIII:132886-133325 3.72e-07 26_[+2(1.37e-10)]_53 chrIX:25771-28633 8.70e-02 100 chrI:169598-170863 1.11e-01 100 chrXI:556068-556360 9.61e-01 100 chrVII:610796-615620 4.71e-01 100 chrIV:667794-668240 8.96e-09 51_[+1(2.17e-12)]_23 chrXIII:372233-372741 1.96e-12 19_[+1(1.00e-10)]_10_[+2(2.93e-09)]_\ 24 chrXV:539658-543886 5.16e-01 100 chrX:391831-391931 9.27e-01 100 chrVIII:282170-283164 9.18e-01 100 chrXII:368683-370264 9.97e-01 100 chrXIII:115548-117791 9.05e-02 100 chrXII:1017695-1019430 1.20e-01 100 chrIV:466243-470797 9.55e-01 100 chrXIII:752887-754041 8.48e-01 100 chrXI:302719-303188 3.84e-01 100 chrV:250120-250496 1.34e-14 32_[+3(1.14e-11)]_9_[-1(4.00e-09)]_\ 13 chrXIII:224071-224381 4.76e-01 100 chrIV:812498-813210 1.84e-01 100 chrXV:505111-505498 5.55e-01 100 chrIV:1095098-1095661 1.58e-06 52_[+1(9.55e-10)]_22 chrXII:241627-242017 9.60e-01 100 chrVII:930723-931214 1.06e-10 46_[+1(3.86e-10)]_7_[+2(2.76e-07)] chrIV:914004-914718 3.95e-01 100 chrVII:338531-341853 8.93e-01 100 chrVII:300791-301807 8.77e-01 100 chrVI:223949-225313 1.00e+00 100 chrIII:210362-211071 9.89e-01 100 chrII:547835-548652 9.68e-01 100 chrV:406089-408965 3.55e-01 100 chrV:441812-442595 2.67e-02 42_[+3(4.13e-05)]_38 chrV:431002-431550 3.68e-02 20_[+1(5.67e-05)]_54 chrIII:168176-168677 9.17e-01 100 chrXV:410849-412566 3.64e-01 100 chrV:99920-100313 4.88e-01 100 chrII:151232-151626 9.73e-01 100 chrXVI:868553-869491 5.67e-01 100 chrIX:438868-439887 6.67e-01 100 chrII:592885-593273 8.09e-01 100 chrXVI:445812-449796 5.18e-02 75_[-2(3.18e-05)]_4 chrII:290386-291484 6.96e-01 100 chrX:451097-451197 2.91e-02 100 chrXIII:484257-486403 6.85e-01 100 chrIV:1062158-1062335 6.21e-01 100 chrIV:992612-993032 8.03e-05 64_[-2(2.76e-07)]_15 chrXII:628180-628623 1.19e-05 36_[-2(1.31e-08)]_43 chrXIII:872713-872908 9.66e-01 100 chrX:390915-391015 6.75e-04 23_[+2(2.94e-07)]_56 chrX:378173-378273 3.98e-06 50_[-2(2.93e-09)]_29 chrII:168531-169693 5.96e-01 100 chrV:299031-301997 8.92e-01 100 chrXIV:96028-96639 2.61e-08 4_[-3(4.95e-10)]_13_[-2(2.22e-05)]_\ 9_[-3(7.89e-05)]_13 chrIV:308026-308389 2.36e-01 100 chrIX:190684-192496 1.72e-01 100 chrIV:187673-190125 4.09e-01 100 chrII:529114-531623 9.15e-01 100 chrXIII:131669-132072 1.37e-07 16_[+1(2.15e-11)]_58 chrIV:359377-359857 3.32e-11 14_[-2(1.31e-08)]_32_[-1(2.40e-09)]_\ 7 chrV:321977-325288 7.20e-01 100 chrVII:479144-482926 4.85e-01 100 chrVIII:173901-176037 2.12e-01 100 chrVII:343860-345218 8.84e-01 100 chrXV:833397-834280 3.01e-01 100 chrXII:261278-264061 5.36e-01 100 chrVIII:442600-443672 3.69e-01 100 chrVIII:237281-238108 1.00e+00 100 chrVII:287205-287627 3.84e-01 100 chrVII:519366-521093 1.21e-01 100 chrIV:1418279-1419802 8.69e-01 100 chrII:405693-406157 1.37e-07 36_[-1(2.15e-11)]_38 chrXV:1060362-1061005 2.53e-01 100 chrXIII:499058-500687 2.49e-01 100 chrVIII:34432-36090 5.82e-01 100 chrVII:648077-648498 5.84e-01 100 chrIX:197416-197766 4.55e-06 55_[+3(1.36e-09)]_25 chrIV:1278195-1279025 7.62e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************