******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--STE12/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:332308-334306 1.0000 100 chrVIII:132787-133355 1.0000 100 chrXIV:675686-676033 1.0000 100 chrVI:222897-224160 1.0000 100 chrXI:163275-164730 1.0000 100 chrI:141560-143693 1.0000 100 chrIV:1359207-1361221 1.0000 100 chrXVI:817989-818404 1.0000 100 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1.0000 100 chrXIV:102463-102961 1.0000 100 chrVII:544376-545995 1.0000 100 chrIX:370228-370609 1.0000 100 chrX:663451-663551 1.0000 100 chrX:291082-291182 1.0000 100 chrX:68956-69056 1.0000 100 chrVI:220811-222068 1.0000 100 chrXV:167966-168451 1.0000 100 chrXV:1003925-1005011 1.0000 100 chrXIII:463338-463894 1.0000 100 chrX:79267-79367 1.0000 100 chrXI:24838-26495 1.0000 100 chrIV:1256857-1257277 1.0000 100 chrXV:228102-228631 1.0000 100 chrVIII:466774-467228 1.0000 100 chrVIII:475474-475921 1.0000 100 chrXIII:756074-756677 1.0000 100 chrXIV:529239-529913 1.0000 100 chrX:541326-541426 1.0000 100 chrIV:1175588-1176071 1.0000 100 chrV:377961-378365 1.0000 100 chrX:531609-531709 1.0000 100 chrXIV:108430-113106 1.0000 100 chrIX:141106-142631 1.0000 100 chrIII:123344-124150 1.0000 100 chrV:354709-355400 1.0000 100 chrIV:520736-521185 1.0000 100 chrVII:147869-149530 1.0000 100 chrIX:316130-318208 1.0000 100 chrX:119357-119457 1.0000 100 chrIII:228633-229727 1.0000 100 chrII:140467-140841 1.0000 100 chrXVI:302652-304346 1.0000 100 chrVIII:62558-62922 1.0000 100 chrVII:828465-828977 1.0000 100 chrXI:302710-303231 1.0000 100 chrXIII:872680-872969 1.0000 100 chrVIII:562272-562584 1.0000 100 chrVII:914785-915205 1.0000 100 chrXIII:145879-147546 1.0000 100 chrXII:368169-371421 1.0000 100 chrV:176895-177443 1.0000 100 chrXI:140786-141484 1.0000 100 chrIV:980780-981289 1.0000 100 chrVII:702849-703266 1.0000 100 chrXV:758890-759543 1.0000 100 chrX:378171-378271 1.0000 100 chrVII:786914-788768 1.0000 100 chrIV:519574-519909 1.0000 100 chrIV:410170-410673 1.0000 100 chrXVI:821634-822502 1.0000 100 chrX:348796-348896 1.0000 100 chrII:413855-415920 1.0000 100 chrXIII:510743-511694 1.0000 100 chrXV:671067-671421 1.0000 100 chrIII:265408-268210 1.0000 100 chrIX:255035-258106 1.0000 100 chrXIV:545622-547450 1.0000 100 chrVI:167266-167702 1.0000 100 chrIV:1362287-1362641 1.0000 100 chrXV:216240-216694 1.0000 100 chrXIV:64908-65538 1.0000 100 chrIV:555381-556676 1.0000 100 chrVIII:455536-456118 1.0000 100 chrIX:0-240 1.0000 100 chrXII:83995-84457 1.0000 100 chrIII:176894-178823 1.0000 100 chrI:180908-181499 1.0000 100 chrVIII:505802-506222 1.0000 100 chrXVI:560002-560483 1.0000 100 chrXIII:504680-505240 1.0000 100 chrV:443041-443503 1.0000 100 chrII:44981-45384 1.0000 100 chrX:745215-745315 1.0000 100 chrVI:86399-86999 1.0000 100 chrXVI:641207-641643 1.0000 100 chrVII:479146-482990 1.0000 100 chrVII:938984-939695 1.0000 100 chrXV:796710-798426 1.0000 100 chrXII:897695-899738 1.0000 100 chrXIV:602139-602527 1.0000 100 chrXI:518586-521136 1.0000 100 chrIV:233867-235249 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--STE12/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--STE12/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--STE12/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.295 C 0.205 G 0.205 T 0.295 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--STE12/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF BSGGRATCGAACCSVGGACCT MEME-1 width = 21 sites = 104 llr = 1693 E-value = 1.5e-323 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVGGACCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :12:65:::aa::13126::: pos.-specific C 44:::2:8:::a7532:1662 probability G 357a42::a::::34581121 matrix T 3::::2a2::::21:2:2316 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * ** * Relative 1.4 * ****** * Entropy 1.2 * ******* * (23.5 bits) 1.0 ** ******* * ** 0.7 ***** ******** * ** 0.5 ***** *********** *** 0.2 ***** *************** 0.0 --------------------- Multilevel CGGGAATCGAACCCGGGACCT consensus TCA GG T GATA T C sequence G CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVGGACCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631673-632117 + 10 2.71e-13 GGGGCGAGC CGGGACTCGAACCCGGGACCT CCCGCACCCT chrIV:83344-83803 - 66 2.46e-11 TTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXV:226440-226878 + 11 2.46e-11 TTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrVII:930767-931206 + 26 2.46e-11 ATGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrX:396558-396658 + 14 2.46e-11 ATGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXVI:860146-860680 - 57 2.46e-11 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXVI:572057-572584 - 40 2.46e-11 TTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrVI:180696-181248 + 61 2.46e-11 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXIII:183705-184185 + 12 2.46e-11 ATGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXII:214694-215165 + 13 5.59e-11 ATGGACGCAA CCGGAATCGAACCGATGACCT CTTCCTTGCA chrI:166013-166610 - 49 5.59e-11 TTGGACGCAA CCGGAATCGAACCGATGACCT CTTCCTTGCA chrIV:410170-410673 - 51 1.41e-10 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrXII:656695-657244 + 24 1.41e-10 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrXIII:320975-321329 + 54 1.41e-10 ATGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrVII:774150-774677 - 29 1.41e-10 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrXIII:768194-768632 + 15 1.41e-10 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrVIII:475474-475921 + 68 1.99e-10 ATGTTCCAAC CGAGGATCGAACTCGGGACCT TTGCCGTGTG chrIV:1075308-1075737 + 9 1.99e-10 GTTCCAAC CGAGGATCGAACTCGGGACCT TTGCCGTGTG chrXIV:567891-568504 - 41 6.15e-10 AGGGGCGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrVI:226435-226927 + 66 6.15e-10 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrXII:92362-92843 - 69 6.15e-10 AGGGGCGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrV:135198-135698 + 36 6.15e-10 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrIV:1201514-1202090 - 41 6.15e-10 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrXV:300871-301420 - 74 6.15e-10 GCGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrXIII:480413-480850 + 49 6.15e-10 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrIV:1352272-1352716 + 31 6.15e-10 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrV:435611-435999 + 6 6.15e-10 CTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrX:414800-414900 - 23 6.15e-10 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrXV:980485-981050 - 41 6.15e-10 AGGGGCGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrVII:122047-122533 - 72 6.15e-10 GCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrVIII:388688-389194 + 11 6.15e-10 TGGGGCGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrXIV:602139-602527 - 73 8.27e-10 GTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXIV:569707-570144 + 1 8.27e-10 . GCGGGATCGAACCGCTGATCC CCGCGTTATT chrVII:779410-779913 - 47 8.27e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrV:176895-177443 - 22 1.11e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrXIII:290633-291140 - 7 1.11e-09 ACTCCGCTAC GGGGAGTCGAACCCCGGTCTC CACGGT chrIX:197315-197940 - 57 1.11e-09 ACTCCGAAGC GGGGAGTCGAACCCCGGTCTC CACGGTGAGA chrIV:1016963-1017500 + 35 1.11e-09 ACTCCGAAGC GGGGAGTCGAACCCCGGTCTC CACGGTGAGA chrV:487071-487596 + 57 1.11e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrVII:541598-542166 - 60 1.11e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrVII:401121-401993 + 29 1.11e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrII:350635-351113 - 45 2.52e-09 AAGGTCTTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrXII:448462-448953 + 2 2.52e-09 C CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrIV:644939-645380 + 53 2.52e-09 AAGGTCCTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrV:130850-131411 + 11 2.52e-09 TAGGTCTTAC CCGGATTCGAACCGGGGTTGT TCGGATCAAA chrVII:412099-412582 + 13 3.26e-09 TTGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXII:687656-688144 + 18 3.26e-09 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:372213-372724 + 36 3.26e-09 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXI:307914-308438 + 27 3.26e-09 TTGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:586421-586885 + 42 3.26e-09 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrII:326547-327152 + 2 3.71e-09 C CGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrXI:578754-579392 - 8 4.20e-09 ACTCCTCATA GGGGGCTCGAACCCCTGACAT TTCGGTA chrVII:828465-828977 + 61 5.38e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrVII:405120-405866 - 69 5.38e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrXI:162262-162734 + 48 5.38e-09 ACACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrIV:568693-569220 - 18 5.38e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrXIII:131604-132088 + 38 5.38e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrX:355151-355251 - 28 5.38e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrXIII:808020-808554 + 18 1.69e-08 AAGGTCCCAC CCGGATTCGAACTGGGGTTGT TCGGATCAGA chrX:58804-58904 + 59 2.09e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrIV:434014-434539 + 47 2.09e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrII:266211-266675 - 28 2.09e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrIX:325495-326123 - 32 2.09e-08 TTGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrXVI:560002-560483 + 15 5.65e-08 ATGCGAATTC TGTGGATCGAACACAGGACCT CCAGATAACT chrXVI:622354-622843 + 1 5.65e-08 . TGTGGATCGAACACAGGACCT CCAGATAACT chrIV:1095137-1095706 + 8 5.65e-08 CGAACTC TGTGGATCGAACACAGGACCT CCAGATATCT chrVIII:358288-358755 + 16 5.65e-08 ATGCGAATTC TGTGGATCGAACACAGGACCT CCAGATAACT chrX:541326-541426 - 54 6.20e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrXIII:463338-463894 - 30 6.20e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrXII:426909-427457 - 41 6.20e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrX:374194-374294 + 4 6.20e-08 GAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrXI:513067-513637 + 39 6.20e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrXI:302710-303231 - 74 7.45e-08 AACGGA CAGGAATTGAACCTGCAACCC TTCGATTGCA chrXIII:378987-379593 + 72 7.45e-08 TTGAAACGGA CAGGAATTGAACCTGCAACCC TTCGATTG chrXVI:55805-56555 + 48 7.45e-08 TTGAAACGGA CAGGAATTGAACCTGCAACCC TTCGATTGCA chrXV:228102-228631 - 59 8.15e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXII:975792-976246 + 23 8.15e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXIV:632424-632910 - 26 8.15e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrVII:730943-731407 - 56 8.15e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXI:74399-74889 - 74 8.15e-08 CCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrVI:167266-167702 - 62 8.91e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrX:354044-354144 - 66 8.91e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXIII:837732-838238 - 52 8.91e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXIII:168600-169052 - 78 8.91e-08 GG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXV:339972-340601 + 72 1.06e-07 TCTTCCCCGC CAGGACTTGAACCTGGAATCT TCTGGTTC chrXIII:572739-573139 + 3 1.90e-07 GG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrXVI:744058-744592 - 51 2.61e-07 TTGCCACCTG TCAGAATTGAACTAACGACCT TTGCATTACA chrII:642850-643256 + 13 3.52e-07 AAGCTCGCAC TCAGGATCGAACTAAGGACCA ACAGATTTGC chrXVI:435634-436177 + 47 3.52e-07 AAGCTCGCAC TCAGGATCGAACTAAGGACCA ACAGATTTGC chrIV:1305407-1305922 - 69 5.04e-07 ACGACAACTG CAGGACTCGAACCTGCGCGGG CCAAAGCCCA chrXII:167724-168246 + 18 5.04e-07 ACGACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrIV:437547-438076 - 63 5.04e-07 ACGACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrXIII:258968-259447 + 10 5.04e-07 CGACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrII:226823-227404 - 64 5.04e-07 ACGACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrVIII:132787-133355 + 14 5.04e-07 TCGACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrXI:83715-84849 - 30 1.10e-06 CTGAAGGATG CGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrII:347392-347920 - 51 1.10e-06 CTGAAGGATG CGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrVII:483239-483822 - 5 1.17e-06 GAAAACAAAC CCGGTCTCGAAGCGGAGATCC GGCG chrX:517626-517726 + 3 1.25e-06 GC TCGGTTTCGATCCGAGGACAT CAGGGTTATG chrXV:710016-710535 - 18 1.25e-06 TTAGCGCCGC TCGGTTTCGATCCGAGGACAT CAGGGTTATG chrXVI:338607-339135 + 36 1.25e-06 TTAGCGCCGC TCGGTTTCGATCCGAGGACAT CAGGGTTATG chrVII:110417-110895 + 28 1.32e-06 TTGCCATCTC CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrXI:313189-313657 + 37 1.32e-06 ATGCCATCTC CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrV:288227-288732 + 23 2.08e-06 ACGACACCAG CAGGATTTGAACCAGCGCGGG CAGAGCCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVGGACCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631673-632117 2.7e-13 9_[+1]_70 chrIV:83344-83803 2.5e-11 65_[-1]_14 chrXV:226440-226878 2.5e-11 10_[+1]_69 chrVII:930767-931206 2.5e-11 25_[+1]_54 chrX:396558-396658 2.5e-11 13_[+1]_66 chrXVI:860146-860680 2.5e-11 56_[-1]_23 chrXVI:572057-572584 2.5e-11 39_[-1]_40 chrVI:180696-181248 2.5e-11 60_[+1]_19 chrXIII:183705-184185 2.5e-11 11_[+1]_68 chrXII:214694-215165 5.6e-11 12_[+1]_67 chrI:166013-166610 5.6e-11 48_[-1]_31 chrIV:410170-410673 1.4e-10 50_[-1]_29 chrXII:656695-657244 1.4e-10 23_[+1]_56 chrXIII:320975-321329 1.4e-10 53_[+1]_26 chrVII:774150-774677 1.4e-10 28_[-1]_51 chrXIII:768194-768632 1.4e-10 14_[+1]_65 chrVIII:475474-475921 2e-10 67_[+1]_12 chrIV:1075308-1075737 2e-10 8_[+1]_71 chrXIV:567891-568504 6.2e-10 40_[-1]_39 chrVI:226435-226927 6.2e-10 65_[+1]_14 chrXII:92362-92843 6.2e-10 68_[-1]_11 chrV:135198-135698 6.2e-10 35_[+1]_44 chrIV:1201514-1202090 6.2e-10 40_[-1]_39 chrXV:300871-301420 6.2e-10 73_[-1]_6 chrXIII:480413-480850 6.2e-10 48_[+1]_31 chrIV:1352272-1352716 6.2e-10 30_[+1]_49 chrV:435611-435999 6.2e-10 5_[+1]_74 chrX:414800-414900 6.2e-10 22_[-1]_57 chrXV:980485-981050 6.2e-10 40_[-1]_39 chrVII:122047-122533 6.2e-10 71_[-1]_8 chrVIII:388688-389194 6.2e-10 10_[+1]_69 chrXIV:602139-602527 8.3e-10 72_[-1]_7 chrXIV:569707-570144 8.3e-10 [+1]_79 chrVII:779410-779913 8.3e-10 46_[-1]_33 chrV:176895-177443 1.1e-09 21_[-1]_58 chrXIII:290633-291140 1.1e-09 6_[-1]_73 chrIX:197315-197940 1.1e-09 56_[-1]_23 chrIV:1016963-1017500 1.1e-09 34_[+1]_45 chrV:487071-487596 1.1e-09 56_[+1]_23 chrVII:541598-542166 1.1e-09 59_[-1]_20 chrVII:401121-401993 1.1e-09 28_[+1]_51 chrII:350635-351113 2.5e-09 44_[-1]_35 chrXII:448462-448953 2.5e-09 1_[+1]_78 chrIV:644939-645380 2.5e-09 52_[+1]_27 chrV:130850-131411 2.5e-09 10_[+1]_69 chrVII:412099-412582 3.3e-09 12_[+1]_67 chrXII:687656-688144 3.3e-09 17_[+1]_62 chrXIII:372213-372724 3.3e-09 35_[+1]_44 chrXI:307914-308438 3.3e-09 26_[+1]_53 chrXIII:586421-586885 3.3e-09 41_[+1]_38 chrII:326547-327152 3.7e-09 1_[+1]_78 chrXI:578754-579392 4.2e-09 7_[-1]_72 chrVII:828465-828977 5.4e-09 60_[+1]_19 chrVII:405120-405866 5.4e-09 68_[-1]_11 chrXI:162262-162734 5.4e-09 47_[+1]_32 chrIV:568693-569220 5.4e-09 17_[-1]_62 chrXIII:131604-132088 5.4e-09 37_[+1]_42 chrX:355151-355251 5.4e-09 27_[-1]_52 chrXIII:808020-808554 1.7e-08 17_[+1]_62 chrX:58804-58904 2.1e-08 58_[+1]_21 chrIV:434014-434539 2.1e-08 46_[+1]_33 chrII:266211-266675 2.1e-08 27_[-1]_52 chrIX:325495-326123 2.1e-08 31_[-1]_48 chrXVI:560002-560483 5.6e-08 14_[+1]_65 chrXVI:622354-622843 5.6e-08 [+1]_79 chrIV:1095137-1095706 5.6e-08 7_[+1]_72 chrVIII:358288-358755 5.6e-08 15_[+1]_64 chrX:541326-541426 6.2e-08 53_[-1]_26 chrXIII:463338-463894 6.2e-08 29_[-1]_50 chrXII:426909-427457 6.2e-08 40_[-1]_39 chrX:374194-374294 6.2e-08 3_[+1]_76 chrXI:513067-513637 6.2e-08 38_[+1]_41 chrXI:302710-303231 7.4e-08 73_[-1]_6 chrXIII:378987-379593 7.4e-08 71_[+1]_8 chrXVI:55805-56555 7.4e-08 47_[+1]_32 chrXV:228102-228631 8.1e-08 58_[-1]_21 chrXII:975792-976246 8.1e-08 22_[+1]_57 chrXIV:632424-632910 8.1e-08 25_[-1]_54 chrVII:730943-731407 8.1e-08 55_[-1]_24 chrXI:74399-74889 8.1e-08 73_[-1]_6 chrVI:167266-167702 8.9e-08 61_[-1]_18 chrX:354044-354144 8.9e-08 65_[-1]_14 chrXIII:837732-838238 8.9e-08 51_[-1]_28 chrXIII:168600-169052 8.9e-08 77_[-1]_2 chrXV:339972-340601 1.1e-07 71_[+1]_8 chrXIII:572739-573139 1.9e-07 2_[+1]_77 chrXVI:744058-744592 2.6e-07 50_[-1]_29 chrII:642850-643256 3.5e-07 12_[+1]_67 chrXVI:435634-436177 3.5e-07 46_[+1]_33 chrIV:1305407-1305922 5e-07 68_[-1]_11 chrXII:167724-168246 5e-07 17_[+1]_62 chrIV:437547-438076 5e-07 62_[-1]_17 chrXIII:258968-259447 5e-07 9_[+1]_70 chrII:226823-227404 5e-07 63_[-1]_16 chrVIII:132787-133355 5e-07 13_[+1]_66 chrXI:83715-84849 1.1e-06 29_[-1]_50 chrII:347392-347920 1.1e-06 50_[-1]_29 chrVII:483239-483822 1.2e-06 4_[-1]_75 chrX:517626-517726 1.2e-06 2_[+1]_77 chrXV:710016-710535 1.2e-06 17_[-1]_62 chrXVI:338607-339135 1.2e-06 35_[+1]_44 chrVII:110417-110895 1.3e-06 27_[+1]_52 chrXI:313189-313657 1.3e-06 36_[+1]_43 chrV:288227-288732 2.1e-06 22_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVGGACCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSGGRATCGAACCSVGGACCT width=21 seqs=104 chrXIV:631673-632117 ( 10) CGGGACTCGAACCCGGGACCT 1 chrIV:83344-83803 ( 66) CCGGAATCGAACCGGGGGCCC 1 chrXV:226440-226878 ( 11) CCGGAATCGAACCGGGGGCCC 1 chrVII:930767-931206 ( 26) CCGGAATCGAACCGGGGGCCC 1 chrX:396558-396658 ( 14) CCGGAATCGAACCGGGGGCCC 1 chrXVI:860146-860680 ( 57) CCGGAATCGAACCGGGGGCCC 1 chrXVI:572057-572584 ( 40) CCGGAATCGAACCGGGGGCCC 1 chrVI:180696-181248 ( 61) CCGGAATCGAACCGGGGGCCC 1 chrXIII:183705-184185 ( 12) CCGGAATCGAACCGGGGGCCC 1 chrXII:214694-215165 ( 13) CCGGAATCGAACCGATGACCT 1 chrI:166013-166610 ( 49) CCGGAATCGAACCGATGACCT 1 chrIV:410170-410673 ( 51) CCGGAATCGAACCGGAGACCT 1 chrXII:656695-657244 ( 24) CCGGAATCGAACCGGAGACCT 1 chrXIII:320975-321329 ( 54) CCGGAATCGAACCGGAGACCT 1 chrVII:774150-774677 ( 29) CCGGAATCGAACCGGAGACCT 1 chrXIII:768194-768632 ( 15) CCGGAATCGAACCGGAGACCT 1 chrVIII:475474-475921 ( 68) CGAGGATCGAACTCGGGACCT 1 chrIV:1075308-1075737 ( 9) CGAGGATCGAACTCGGGACCT 1 chrXIV:567891-568504 ( 41) TGGGAATTGAACCCAGGGCCT 1 chrVI:226435-226927 ( 66) GGGGGCTCGAACCCCTAACCT 1 chrXII:92362-92843 ( 69) TGGGAATTGAACCCAGGGCCT 1 chrV:135198-135698 ( 36) GGGGGCTCGAACCCCTAACCT 1 chrIV:1201514-1202090 ( 41) GGGGGCTCGAACCCCTAACCT 1 chrXV:300871-301420 ( 74) TGGGAATTGAACCCAGGGCCT 1 chrXIII:480413-480850 ( 49) GGGGGCTCGAACCCCTAACCT 1 chrIV:1352272-1352716 ( 31) GGGGGCTCGAACCCCTAACCT 1 chrV:435611-435999 ( 6) GGGGGCTCGAACCCCTAACCT 1 chrX:414800-414900 ( 23) GGGGGCTCGAACCCCTAACCT 1 chrXV:980485-981050 ( 41) TGGGAATTGAACCCAGGGCCT 1 chrVII:122047-122533 ( 72) GGGGGCTCGAACCCCTAACCT 1 chrVIII:388688-389194 ( 11) TGGGAATTGAACCCAGGGCCT 1 chrXIV:602139-602527 ( 73) GCGGGATCGAACCGCTGATCC 1 chrXIV:569707-570144 ( 1) GCGGGATCGAACCGCTGATCC 1 chrVII:779410-779913 ( 47) CGAGAATCGAACCCGTGTCCC 1 chrV:176895-177443 ( 22) GGGGAGTCGAACCCCGGTCTC 1 chrXIII:290633-291140 ( 7) GGGGAGTCGAACCCCGGTCTC 1 chrIX:197315-197940 ( 57) GGGGAGTCGAACCCCGGTCTC 1 chrIV:1016963-1017500 ( 35) GGGGAGTCGAACCCCGGTCTC 1 chrV:487071-487596 ( 57) GGGGAGTCGAACCCCGGTCTC 1 chrVII:541598-542166 ( 60) GGGGAGTCGAACCCCGGTCTC 1 chrVII:401121-401993 ( 29) GGGGAGTCGAACCCCGGTCTC 1 chrII:350635-351113 ( 45) CCGGATTCGAACCGGGGTTGT 1 chrXII:448462-448953 ( 2) CCGGATTCGAACCGGGGTTGT 1 chrIV:644939-645380 ( 53) CCGGATTCGAACCGGGGTTGT 1 chrV:130850-131411 ( 11) CCGGATTCGAACCGGGGTTGT 1 chrVII:412099-412582 ( 13) CCAGGATCGAACTGGGGACGT 1 chrXII:687656-688144 ( 18) CCAGGATCGAACTGGGGACGT 1 chrXIII:372213-372724 ( 36) CCAGGATCGAACTGGGGACGT 1 chrXI:307914-308438 ( 27) CCAGGATCGAACTGGGGACGT 1 chrXIII:586421-586885 ( 42) CCAGGATCGAACTGGGGACGT 1 chrII:326547-327152 ( 2) CGAGGTTCGAACTCGGGATCT 1 chrXI:578754-579392 ( 8) GGGGGCTCGAACCCCTGACAT 1 chrVII:828465-828977 ( 61) TGGGGGTCGAACCCATAATCT 1 chrVII:405120-405866 ( 69) TGGGGGTCGAACCCATAATCT 1 chrXI:162262-162734 ( 48) TGGGGGTCGAACCCATAATCT 1 chrIV:568693-569220 ( 18) TGGGGGTCGAACCCATAATCT 1 chrXIII:131604-132088 ( 38) TGGGGGTCGAACCCATAATCT 1 chrX:355151-355251 ( 28) TGGGGGTCGAACCCATAATCT 1 chrXIII:808020-808554 ( 18) CCGGATTCGAACTGGGGTTGT 1 chrX:58804-58904 ( 59) TCGGATTTGAACCGATGATCT 1 chrIV:434014-434539 ( 47) TCGGATTTGAACCGATGATCT 1 chrII:266211-266675 ( 28) TCGGATTTGAACCGATGATCT 1 chrIX:325495-326123 ( 32) TCGGATTTGAACCGATGATCT 1 chrXVI:560002-560483 ( 15) TGTGGATCGAACACAGGACCT 1 chrXVI:622354-622843 ( 1) TGTGGATCGAACACAGGACCT 1 chrIV:1095137-1095706 ( 8) TGTGGATCGAACACAGGACCT 1 chrVIII:358288-358755 ( 16) TGTGGATCGAACACAGGACCT 1 chrX:541326-541426 ( 54) GGGGAATTGAACCCCGATCTG 1 chrXIII:463338-463894 ( 30) GGGGAATTGAACCCCGATCTG 1 chrXII:426909-427457 ( 41) GGGGAATTGAACCCCGATCTG 1 chrX:374194-374294 ( 4) GGGGAATTGAACCCCGATCTG 1 chrXI:513067-513637 ( 39) GGGGAATTGAACCCCGATCTG 1 chrXI:302710-303231 ( 74) CAGGAATTGAACCTGCAACCC 1 chrXIII:378987-379593 ( 72) CAGGAATTGAACCTGCAACCC 1 chrXVI:55805-56555 ( 48) CAGGAATTGAACCTGCAACCC 1 chrXV:228102-228631 ( 59) TGAGGGTTGAACTCACGATCT 1 chrXII:975792-976246 ( 23) TGAGGGTTGAACTCACGATCT 1 chrXIV:632424-632910 ( 26) TGAGGGTTGAACTCACGATCT 1 chrVII:730943-731407 ( 56) TGAGGGTTGAACTCACGATCT 1 chrXI:74399-74889 ( 74) TGAGGGTTGAACTCACGATCT 1 chrVI:167266-167702 ( 62) GGCGAGTCGAACGCCCGATCT 1 chrX:354044-354144 ( 66) GGCGAGTCGAACGCCCGATCT 1 chrXIII:837732-838238 ( 52) GGCGAGTCGAACGCCCGATCT 1 chrXIII:168600-169052 ( 78) GGCGAGTCGAACGCCCGATCT 1 chrXV:339972-340601 ( 72) CAGGACTTGAACCTGGAATCT 1 chrXIII:572739-573139 ( 3) GGAGGTTCGAACTCTCGACCT 1 chrXVI:744058-744592 ( 51) TCAGAATTGAACTAACGACCT 1 chrII:642850-643256 ( 13) TCAGGATCGAACTAAGGACCA 1 chrXVI:435634-436177 ( 47) TCAGGATCGAACTAAGGACCA 1 chrIV:1305407-1305922 ( 69) CAGGACTCGAACCTGCGCGGG 1 chrXII:167724-168246 ( 18) CAGGACTCGAACCTGCGCGGG 1 chrIV:437547-438076 ( 63) CAGGACTCGAACCTGCGCGGG 1 chrXIII:258968-259447 ( 10) CAGGACTCGAACCTGCGCGGG 1 chrII:226823-227404 ( 64) CAGGACTCGAACCTGCGCGGG 1 chrVIII:132787-133355 ( 14) CAGGACTCGAACCTGCGCGGG 1 chrXI:83715-84849 ( 30) CGAGGTTCGAACTCGCGCGGA 1 chrII:347392-347920 ( 51) CGAGGTTCGAACTCGCGCGGA 1 chrVII:483239-483822 ( 5) CCGGTCTCGAAGCGGAGATCC 1 chrX:517626-517726 ( 3) TCGGTTTCGATCCGAGGACAT 1 chrXV:710016-710535 ( 18) TCGGTTTCGATCCGAGGACAT 1 chrXVI:338607-339135 ( 36) TCGGTTTCGATCCGAGGACAT 1 chrVII:110417-110895 ( 28) CTAGAATCGAACCAGGGTTTC 1 chrXI:313189-313657 ( 37) CTAGAATCGAACCAGGGTTTC 1 chrV:288227-288732 ( 23) CAGGATTTGAACCAGCGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVGGACCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.37866 E= 1.5e-323 -1334 120 48 -9 -154 93 141 -400 -54 -232 189 -300 -1334 -1334 238 -1334 93 -1334 96 -300 55 -15 14 -91 -1334 -1334 -1334 170 -1334 198 -1334 -36 -1334 -1334 238 -1334 170 -1334 -1334 -1334 166 -1334 -1334 -341 -1334 236 -432 -1334 -300 193 -232 -68 -241 141 81 -168 0 43 114 -500 -241 20 135 -41 -48 -1334 202 -1334 95 -115 -62 -68 -1334 168 -115 -5 -300 174 -7 -119 -300 26 -74 100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVGGACCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 104 E= 1.5e-323 0.000000 0.442308 0.269231 0.288462 0.105769 0.365385 0.509615 0.019231 0.211538 0.038462 0.711538 0.038462 0.000000 0.000000 1.000000 0.000000 0.586538 0.000000 0.375000 0.038462 0.451923 0.173077 0.211538 0.163462 0.000000 0.000000 0.000000 1.000000 0.000000 0.759615 0.000000 0.240385 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.971154 0.000000 0.000000 0.028846 0.000000 0.990385 0.009615 0.000000 0.038462 0.730769 0.038462 0.192308 0.057692 0.509615 0.336538 0.096154 0.307692 0.259615 0.423077 0.009615 0.057692 0.221154 0.490385 0.230769 0.221154 0.000000 0.778846 0.000000 0.596154 0.086538 0.125000 0.192308 0.000000 0.615385 0.086538 0.298077 0.038462 0.644231 0.182692 0.134615 0.038462 0.230769 0.115385 0.615385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVGGACCT MEME-1 regular expression -------------------------------------------------------------------------------- [CTG][GC][GA]G[AG][AG]T[CT]GAACC[CG][GAC][GTC][GA]A[CT]C[TC] -------------------------------------------------------------------------------- Time 350.96 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBYNYKTGGCCBAGTBGKTWRAGSSVHM MEME-2 width = 29 sites = 76 llr = 1488 E-value = 6.2e-306 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBYNYKTGGCCBAGTBGKTWRAGSSVHM MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:1322:2:::1a1::::2666:::433 pos.-specific C :33424::::763:::2::1::2:65234 probability G a541214:8a:22:9:4a61:428352:2 matrix T ::34234a::334::a3:464:121:241 bits 2.4 * * * 2.1 * * * * 1.9 * * * * 1.7 * *** ** * * Relative 1.4 * *** *** * * Entropy 1.2 * **** *** ** * * (28.2 bits) 1.0 ** **** *** ** * *** 0.7 ** ***** *** ** ** *** 0.5 *** ****** ****** ** *** 0.2 **** ********************* ** 0.0 ----------------------------- Multilevel GGGCACGTGGCCTAGTGGGTAAAGCCATC consensus CCTGTT TTC T TATG GGCCA sequence T T G C A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCCBAGTBGKTWRAGSSVHM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:602139-602527 + 29 3.48e-13 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrV:443041-443503 - 25 3.48e-13 ATTAAAATTT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXIV:569707-570144 - 37 3.48e-13 AGATAACAGT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrIV:410170-410673 + 8 8.24e-13 AAATATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXII:656695-657244 - 59 8.24e-13 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrX:197111-197211 - 3 8.24e-13 AATAATATTA GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CC chrXIII:768194-768632 - 50 8.24e-13 AATAAGAAAT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrVI:204784-205202 - 25 8.24e-13 ACAAACGTTC GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXII:731917-732318 + 23 7.66e-12 AACATACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrX:617703-617803 + 32 7.66e-12 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrIV:980780-981289 - 43 3.10e-11 TGTAAATTGA GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrIV:1305407-1305922 + 16 3.10e-11 TACAAATTAA GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXII:167724-168246 - 62 3.10e-11 ATAGTCATAT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrIV:437547-438076 + 11 3.10e-11 TCATTAGTAA GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXIII:258968-259447 - 54 3.10e-11 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrII:226823-227404 + 12 3.10e-11 TGTAAAACGA GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrVIII:132787-133355 - 58 3.10e-11 TATAATAAGT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXII:214694-215165 - 48 4.75e-11 ACGCGTTTTA GGGCACATGGCGCAGTTGGTAGCGCGCTT CCCTTGCAAG chrVII:794210-794584 + 70 4.75e-11 CATAGATTGC GGGCACATGGCGCAGTTGGTAGCGCGCTT CC chrI:166013-166610 + 6 4.75e-11 GAGTT GGGCACATGGCGCAGTTGGTAGCGCGCTT CCCTTGCAAG chrX:378171-378271 + 47 6.23e-11 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:469235-469671 + 54 6.23e-11 AGAAATAATT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVII:412099-412582 - 49 6.23e-11 TCAAAAAACT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:379405-379931 + 62 6.23e-11 CAGATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXII:687656-688144 - 54 6.23e-11 ATAAATAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXIII:372213-372724 - 72 6.23e-11 . GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:307914-308438 - 63 6.23e-11 CAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVII:823267-823715 + 41 6.23e-11 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVIII:85166-85563 - 29 6.23e-11 ATAAGAATTT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:288227-288732 - 67 7.12e-11 TGATA GGCACTATGGCCGAGTGGTTAAGGCGACA GACTTGAAAT chrXV:274454-274968 + 12 2.45e-10 AAGTAATCGT GTCCCAGTGGCCGAGTGGTTAAGGCGATG CCCTGCTATT chrXII:784134-784655 + 10 2.45e-10 TGTTCAACC GTCCCAGTGGCCGAGTGGTTAAGGCGATG CCTGCTATTT chrXV:353897-354313 - 30 2.75e-10 ACGGTTTACT GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXIV:560551-560986 - 19 2.75e-10 GTAATAACGG GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXV:228102-228631 + 15 5.31e-10 TAAAATATTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXIV:102463-102961 + 54 5.31e-10 TATATTATAA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXII:975792-976246 - 59 5.31e-10 GGAAATAAAA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXV:487181-487699 + 49 5.31e-10 AACAAAGTTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrVII:730943-731407 + 12 5.31e-10 TAGTCAAAAA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXI:74399-74889 + 30 5.31e-10 ATAGCAATTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrIII:127503-127930 + 50 5.31e-10 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrIV:1095137-1095706 - 62 7.25e-10 TCTTATGTTA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXIV:374651-375107 + 40 7.25e-10 AGAAAAATAA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrIV:83344-83803 + 25 8.86e-10 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVI:162023-162389 + 72 8.86e-10 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC chrXV:226440-226878 - 44 8.86e-10 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrIV:992560-993105 + 50 8.86e-10 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVII:930767-931206 - 59 8.86e-10 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrX:396558-396658 - 47 8.86e-10 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXVI:860146-860680 + 16 8.86e-10 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXIII:183705-184185 - 45 8.86e-10 AATAAAGATC GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXVI:560002-560483 - 69 1.44e-09 TGA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrII:36165-36630 + 51 1.44e-09 TTAGTTGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrIV:1461510-1462052 - 70 1.44e-09 GT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrVIII:237751-238136 - 18 1.44e-09 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXII:628189-628635 + 21 1.44e-09 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrXVI:622354-622843 - 55 1.44e-09 ATTCTGATAT GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVIII:358288-358755 - 70 1.44e-09 AA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXV:300871-301420 + 2 3.21e-09 C GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrVI:101188-101600 + 32 3.21e-09 ACAATAATTC GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXIII:195901-196443 - 20 3.21e-09 AAGTTCACAA GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXV:464240-464711 + 25 3.21e-09 AAGTTAACAA GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrIV:519574-519909 + 52 7.18e-09 GTGATTTTAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXII:605146-605640 - 61 7.18e-09 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTAGAGCTTCG TGCTTATAGC chrX:424281-424381 - 34 7.18e-09 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXII:962813-963282 - 30 7.18e-09 TATTATCGAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrIV:1175588-1176071 + 50 9.00e-09 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrXIII:572739-573139 - 38 9.00e-09 ATAACAGACA GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrX:422640-422740 + 38 9.00e-09 TCCTTTGTAT GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrV:135198-135698 - 71 1.83e-08 A GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrIV:1352272-1352716 - 66 1.83e-08 GAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrV:435611-435999 - 41 1.83e-08 AACAATAAGA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrVII:122047-122533 + 29 1.83e-08 CAACGAATTA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrII:326547-327152 - 38 2.23e-08 TCGAGTTCCG GGTCCAATGGTCCAGTGGTTCAAGACGTC GCCTTTACAC chrIV:359371-359840 + 22 2.54e-08 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrXIV:631673-632117 - 44 5.26e-08 AACTTCTACC GGGCGTGTGGTCTAGAGGTATGATTCTCG CTTAGGGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCCBAGTBGKTWRAGSSVHM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602139-602527 3.5e-13 28_[+2]_43 chrV:443041-443503 3.5e-13 24_[-2]_47 chrXIV:569707-570144 3.5e-13 36_[-2]_35 chrIV:410170-410673 8.2e-13 7_[+2]_64 chrXII:656695-657244 8.2e-13 58_[-2]_13 chrX:197111-197211 8.2e-13 2_[-2]_69 chrXIII:768194-768632 8.2e-13 49_[-2]_22 chrVI:204784-205202 8.2e-13 24_[-2]_47 chrXII:731917-732318 7.7e-12 22_[+2]_49 chrX:617703-617803 7.7e-12 31_[+2]_40 chrIV:980780-981289 3.1e-11 42_[-2]_29 chrIV:1305407-1305922 3.1e-11 15_[+2]_56 chrXII:167724-168246 3.1e-11 61_[-2]_10 chrIV:437547-438076 3.1e-11 10_[+2]_61 chrXIII:258968-259447 3.1e-11 53_[-2]_18 chrII:226823-227404 3.1e-11 11_[+2]_60 chrVIII:132787-133355 3.1e-11 57_[-2]_14 chrXII:214694-215165 4.7e-11 47_[-2]_24 chrVII:794210-794584 4.7e-11 69_[+2]_2 chrI:166013-166610 4.7e-11 5_[+2]_66 chrX:378171-378271 6.2e-11 46_[+2]_25 chrV:469235-469671 6.2e-11 53_[+2]_18 chrVII:412099-412582 6.2e-11 48_[-2]_23 chrXI:379405-379931 6.2e-11 61_[+2]_10 chrXII:687656-688144 6.2e-11 53_[-2]_18 chrXIII:372213-372724 6.2e-11 71_[-2] chrXI:307914-308438 6.2e-11 62_[-2]_9 chrVII:823267-823715 6.2e-11 40_[+2]_31 chrVIII:85166-85563 6.2e-11 28_[-2]_43 chrV:288227-288732 7.1e-11 66_[-2]_5 chrXV:274454-274968 2.5e-10 11_[+2]_60 chrXII:784134-784655 2.5e-10 9_[+2]_62 chrXV:353897-354313 2.7e-10 29_[-2]_42 chrXIV:560551-560986 2.7e-10 18_[-2]_53 chrXV:228102-228631 5.3e-10 14_[+2]_57 chrXIV:102463-102961 5.3e-10 53_[+2]_18 chrXII:975792-976246 5.3e-10 58_[-2]_13 chrXV:487181-487699 5.3e-10 48_[+2]_23 chrVII:730943-731407 5.3e-10 11_[+2]_60 chrXI:74399-74889 5.3e-10 29_[+2]_42 chrIII:127503-127930 5.3e-10 49_[+2]_22 chrIV:1095137-1095706 7.2e-10 61_[-2]_10 chrXIV:374651-375107 7.2e-10 39_[+2]_32 chrIV:83344-83803 8.9e-10 24_[+2]_47 chrVI:162023-162389 8.9e-10 71_[+2] chrXV:226440-226878 8.9e-10 43_[-2]_28 chrIV:992560-993105 8.9e-10 49_[+2]_22 chrVII:930767-931206 8.9e-10 58_[-2]_13 chrX:396558-396658 8.9e-10 46_[-2]_25 chrXVI:860146-860680 8.9e-10 15_[+2]_56 chrXIII:183705-184185 8.9e-10 44_[-2]_27 chrXVI:560002-560483 1.4e-09 68_[-2]_3 chrII:36165-36630 1.4e-09 50_[+2]_21 chrIV:1461510-1462052 1.4e-09 69_[-2]_2 chrVIII:237751-238136 1.4e-09 17_[-2]_54 chrXII:628189-628635 1.4e-09 20_[+2]_51 chrXVI:622354-622843 1.4e-09 54_[-2]_17 chrVIII:358288-358755 1.4e-09 69_[-2]_2 chrXV:300871-301420 3.2e-09 1_[+2]_70 chrVI:101188-101600 3.2e-09 31_[+2]_40 chrXIII:195901-196443 3.2e-09 19_[-2]_52 chrXV:464240-464711 3.2e-09 24_[+2]_47 chrIV:519574-519909 7.2e-09 51_[+2]_20 chrXII:605146-605640 7.2e-09 60_[-2]_11 chrX:424281-424381 7.2e-09 33_[-2]_38 chrXII:962813-963282 7.2e-09 29_[-2]_42 chrIV:1175588-1176071 9e-09 49_[+2]_22 chrXIII:572739-573139 9e-09 37_[-2]_34 chrX:422640-422740 9e-09 37_[+2]_34 chrV:135198-135698 1.8e-08 70_[-2]_1 chrIV:1352272-1352716 1.8e-08 65_[-2]_6 chrV:435611-435999 1.8e-08 40_[-2]_31 chrVII:122047-122533 1.8e-08 28_[+2]_43 chrII:326547-327152 2.2e-08 37_[-2]_34 chrIV:359371-359840 2.5e-08 21_[+2]_50 chrXIV:631673-632117 5.3e-08 43_[-2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCCBAGTBGKTWRAGSSVHM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBYNYKTGGCCBAGTBGKTWRAGSSVHM width=29 seqs=76 chrXIV:602139-602527 ( 29) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrV:443041-443503 ( 25) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:569707-570144 ( 37) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrIV:410170-410673 ( 8) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXII:656695-657244 ( 59) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrX:197111-197211 ( 3) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXIII:768194-768632 ( 50) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrVI:204784-205202 ( 25) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXII:731917-732318 ( 23) GGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrX:617703-617803 ( 32) GGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrIV:980780-981289 ( 43) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrIV:1305407-1305922 ( 16) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXII:167724-168246 ( 62) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrIV:437547-438076 ( 11) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXIII:258968-259447 ( 54) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrII:226823-227404 ( 12) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrVIII:132787-133355 ( 58) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXII:214694-215165 ( 48) GGGCACATGGCGCAGTTGGTAGCGCGCTT 1 chrVII:794210-794584 ( 70) GGGCACATGGCGCAGTTGGTAGCGCGCTT 1 chrI:166013-166610 ( 6) GGGCACATGGCGCAGTTGGTAGCGCGCTT 1 chrX:378171-378271 ( 47) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrV:469235-469671 ( 54) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrVII:412099-412582 ( 49) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXI:379405-379931 ( 62) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXII:687656-688144 ( 54) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXIII:372213-372724 ( 72) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXI:307914-308438 ( 63) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrVII:823267-823715 ( 41) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrVIII:85166-85563 ( 29) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrV:288227-288732 ( 67) GGCACTATGGCCGAGTGGTTAAGGCGACA 1 chrXV:274454-274968 ( 12) GTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrXII:784134-784655 ( 10) GTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrXV:353897-354313 ( 30) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXIV:560551-560986 ( 19) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXV:228102-228631 ( 15) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXIV:102463-102961 ( 54) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXII:975792-976246 ( 59) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXV:487181-487699 ( 49) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrVII:730943-731407 ( 12) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXI:74399-74889 ( 30) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrIII:127503-127930 ( 50) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrIV:1095137-1095706 ( 62) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrXIV:374651-375107 ( 40) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrIV:83344-83803 ( 25) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVI:162023-162389 ( 72) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:226440-226878 ( 44) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrIV:992560-993105 ( 50) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVII:930767-931206 ( 59) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrX:396558-396658 ( 47) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXVI:860146-860680 ( 16) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXIII:183705-184185 ( 45) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXVI:560002-560483 ( 69) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrII:36165-36630 ( 51) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrIV:1461510-1462052 ( 70) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrVIII:237751-238136 ( 18) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrXII:628189-628635 ( 21) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXVI:622354-622843 ( 55) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVIII:358288-358755 ( 70) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrXV:300871-301420 ( 2) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrVI:101188-101600 ( 32) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXIII:195901-196443 ( 20) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXV:464240-464711 ( 25) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrIV:519574-519909 ( 52) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXII:605146-605640 ( 61) GCTCGTGTAGCTCAGTGGTTAGAGCTTCG 1 chrX:424281-424381 ( 34) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXII:962813-963282 ( 30) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrIV:1175588-1176071 ( 50) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrXIII:572739-573139 ( 38) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrX:422640-422740 ( 38) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrV:135198-135698 ( 71) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIV:1352272-1352716 ( 66) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrV:435611-435999 ( 41) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrVII:122047-122533 ( 29) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrII:326547-327152 ( 38) GGTCCAATGGTCCAGTGGTTCAAGACGTC 1 chrIV:359371-359840 ( 22) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrXIV:631673-632117 ( 44) GGGCGTGTGGTCTAGAGGTATGATTCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCCBAGTBGKTWRAGSSVHM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.9651 E= 6.2e-306 -1289 -1289 236 -454 -174 83 149 -355 -296 59 104 -15 -122 94 -55 26 10 13 30 -46 -74 108 -87 -2 -74 -1289 117 31 -1289 -1289 -1289 170 -96 -1289 213 -1289 -1289 -1289 238 -1289 -1289 186 -1289 -2 -1289 159 -29 -23 -138 65 22 21 170 -1289 -1289 -1289 -255 -1289 230 -1289 -454 -287 -1289 164 -296 30 113 -2 -1289 -1289 238 -1289 -1289 -1289 159 45 -55 -155 -106 104 91 -387 -1289 41 101 -1289 99 -1289 88 -29 -29 -138 -1289 -1289 211 -85 -454 159 83 -222 -1289 145 126 -454 36 22 4 -74 -30 71 -228 36 -23 122 4 -174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCCBAGTBGKTWRAGSSVHM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 76 E= 6.2e-306 0.000000 0.000000 0.986842 0.013158 0.092105 0.342105 0.539474 0.026316 0.039474 0.289474 0.394737 0.276316 0.131579 0.368421 0.131579 0.368421 0.328947 0.210526 0.236842 0.223684 0.184211 0.407895 0.105263 0.302632 0.184211 0.000000 0.434211 0.381579 0.000000 0.000000 0.000000 1.000000 0.157895 0.000000 0.842105 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.697368 0.000000 0.302632 0.000000 0.578947 0.157895 0.263158 0.118421 0.302632 0.223684 0.355263 1.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.947368 0.000000 0.013158 0.026316 0.000000 0.960526 0.039474 0.236842 0.421053 0.302632 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.578947 0.421053 0.210526 0.065789 0.092105 0.631579 0.578947 0.013158 0.000000 0.407895 0.618421 0.000000 0.381579 0.000000 0.565789 0.157895 0.157895 0.118421 0.000000 0.000000 0.828947 0.171053 0.013158 0.578947 0.342105 0.065789 0.000000 0.526316 0.460526 0.013158 0.394737 0.223684 0.197368 0.184211 0.250000 0.315789 0.039474 0.394737 0.263158 0.447368 0.197368 0.092105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCCBAGTBGKTWRAGSSVHM MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][GCT][CT][AGTC][CT][GT]TGG[CT][CT][TCG]AGT[GTC]G[GT][TA][AT][AG]AG[CG][CG][AC][TCA][CA] -------------------------------------------------------------------------------- Time 671.16 secs. ******************************************************************************** ******************************************************************************** MOTIF AVAASBGNRHRTBMTAACCAYTAMACTAH MEME-3 width = 29 sites = 39 llr = 755 E-value = 2.8e-112 ******************************************************************************** -------------------------------------------------------------------------------- Motif AVAASBGNRHRTBMTAACCAYTAMACTAH MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8388::13553:14:67::7::936::92 pos.-specific C :41:54232321331::aa:4::61a213 probability G 131253533:5341:23::3::1:3:::: matrix T 2::::222:3:72193::::6a:1::8:4 bits 2.4 ** * 2.1 ** * 1.9 ** * 1.7 ** * * Relative 1.4 * ** * * * Entropy 1.2 ** * ** ** *** (27.9 bits) 1.0 * *** * ******* *** 0.7 ***** ** * ************ 0.5 ******* * ** *************** 0.2 ******* ********************* 0.0 ----------------------------- Multilevel ACAACCGAAAGTGATAACCATTACACTAT consensus G GGCCGCAGCC TG GC AG C C sequence A T GCTC T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBGNRHRTBMTAACCAYTAMACTAH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIII:808020-808554 + 46 5.54e-15 TGTTCGGATC AGAACCGAAAGTGATAACCACTACACTAT AGGACCTTTT chrIV:520736-521185 - 68 4.69e-14 GATC AAAACCGAAAGTGATAACCACTACACTAT AGGACCCTAA chrIV:802560-803029 + 24 4.69e-14 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTAT AGGACCGACA chrII:350635-351113 - 9 4.69e-14 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTAT AAAACCCT chrXII:448462-448953 + 30 4.69e-14 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTAT AGGACCGGAA chrV:130850-131411 + 39 4.69e-14 TGTTCGGATC AAAACCGAAAGTGATAACCACTACACTAT AAAACCTCTT chrIX:197315-197940 - 21 1.34e-11 CTCCACGGTG AGAACGTGATGTGATAGCCGTTACACTAC ATCGGATTTG chrIV:1016963-1017500 + 63 1.34e-11 CTCCACGGTG AGAACGTGATGTGATAGCCGTTACACTAC ATCGGATTG chrX:541326-541426 - 18 4.10e-11 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGATTTT chrIV:568693-569220 - 64 4.10e-11 GGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrXII:426909-427457 - 5 4.10e-11 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACG chrVII:531410-531795 - 64 4.10e-11 GGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGTA chrX:374194-374294 + 32 4.10e-11 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrXI:513067-513637 + 67 4.10e-11 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGG chrIV:1075308-1075737 + 38 5.51e-11 CTTTGCCGTG TGAAGGCAACGTGATAGCCGCTACACTAT TGGAACAATA chrIX:370228-370609 - 55 2.66e-10 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAT chrVII:541598-542166 - 24 2.66e-10 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATGGT chrXVI:209949-210556 + 27 2.66e-10 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTAT ATCGGACAAT chrVII:401121-401993 + 57 2.66e-10 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTAT ATCGGAAACA chrVII:405120-405866 - 33 1.57e-09 TCTTCTGATT AGAAGTCAGACGCGTTGCCATTACGCCAC GCGAGCTACT chrVII:735816-736887 - 45 1.57e-09 TCTTCTGATT AGAAGTCAGACGCGTTGCCATTACGCCAC GCGAGCTATT chrXIII:131604-132088 + 66 1.57e-09 TCTTCTGATT AGAAGTCAGACGCGTTGCCATTACGCCAC GCGAGC chrXIII:747778-748160 + 10 1.57e-09 CTTCTGATT AGAAGTCAGACGCGTTGCCATTACGCCAC GCGAGCTAGT chrVIII:62558-62922 - 71 2.24e-09 C ACAACGATGTGTACTAACCACTATACTAA GATGGCATAT chrVIII:466774-467228 - 45 2.24e-09 CCTTTGCATT ACAAGTGCAACGCTCTACCACTAAGCTAA GGAGGCTAAA chrV:206825-207878 - 62 2.24e-09 TTCATCGGCC ACAACGATGTGTACTAACCACTATACTAA GATGGCGAAC chrXVI:744058-744592 - 15 2.24e-09 CCTTTGCATT ACAAGTGCAACGCTCTACCACTAAGCTAA GGAGGCTTTT chrVII:1004023-1004415 - 53 2.24e-09 CCTTTGCATT ACAAGTGCAACGCTCTACCACTAAGCTAA GGAGGCAAAC chrVII:110417-110895 + 56 2.24e-09 TTCATCGGCC ACAACGATGTGTACTAACCACTATACTAA GATGGCAGGT chrXI:313189-313657 + 65 2.24e-09 TTCATCGGCC ACAACGATGTGTACTAACCACTATACTAA GATGGCA chrX:538364-538464 - 53 2.65e-09 TCTTCTCCTT AGGAGGGAGACGCGTTACCATTACGCCAA CGGAACCAAC chrXIV:6490-7171 + 57 7.08e-09 ACTACTACCA TCCACCGCCCATCATAACCGTTACCCTCC AATTACCCAA chrVII:779410-779913 - 11 1.11e-08 CCCCACCTTG GAAGGGTGGGATGATAACCACTACACTAA CCGCCCGGGG chrXII:11026-11987 + 43 1.18e-08 CTTACCACTA ACCACCGTCCACCATAACCGTTACCCTCC AATTACCCAT chrIV:1256857-1257277 + 28 1.40e-08 CCCATGCTTG GGAAGCATGAATTCTAACCACTGAACCAC TTTCGCTAAG chrX:745215-745315 - 45 2.84e-08 ACTACTACCA TCCACCGTCCACCATAACCGTTACCCTCC AATTACCCAT chrIV:884189-884641 - 2 5.67e-08 AATGTTGCTA TAAGCACGAAGCTCTAACCACTGAGCTAC A chrXI:302710-303231 - 4 8.25e-08 AAGATTTAAT TGGAGTCGAAAGCTCTACCATTGAGCCAC CGC chrX:415800-415900 + 28 8.25e-08 AAGATTTAAT TGGAGTCGAAAGCTCTACCATTGAGCCAC CGCTTCAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBGNRHRTBMTAACCAYTAMACTAH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:808020-808554 5.5e-15 45_[+3]_26 chrIV:520736-521185 4.7e-14 67_[-3]_4 chrIV:802560-803029 4.7e-14 23_[+3]_48 chrII:350635-351113 4.7e-14 8_[-3]_63 chrXII:448462-448953 4.7e-14 29_[+3]_42 chrV:130850-131411 4.7e-14 38_[+3]_33 chrIX:197315-197940 1.3e-11 20_[-3]_51 chrIV:1016963-1017500 1.3e-11 62_[+3]_9 chrX:541326-541426 4.1e-11 17_[-3]_54 chrIV:568693-569220 4.1e-11 63_[-3]_8 chrXII:426909-427457 4.1e-11 4_[-3]_67 chrVII:531410-531795 4.1e-11 63_[-3]_8 chrX:374194-374294 4.1e-11 31_[+3]_40 chrXI:513067-513637 4.1e-11 66_[+3]_5 chrIV:1075308-1075737 5.5e-11 37_[+3]_34 chrIX:370228-370609 2.7e-10 54_[-3]_17 chrVII:541598-542166 2.7e-10 23_[-3]_48 chrXVI:209949-210556 2.7e-10 26_[+3]_45 chrVII:401121-401993 2.7e-10 56_[+3]_15 chrVII:405120-405866 1.6e-09 32_[-3]_39 chrVII:735816-736887 1.6e-09 44_[-3]_27 chrXIII:131604-132088 1.6e-09 65_[+3]_6 chrXIII:747778-748160 1.6e-09 9_[+3]_62 chrVIII:62558-62922 2.2e-09 70_[-3]_1 chrVIII:466774-467228 2.2e-09 44_[-3]_27 chrV:206825-207878 2.2e-09 61_[-3]_10 chrXVI:744058-744592 2.2e-09 14_[-3]_57 chrVII:1004023-1004415 2.2e-09 52_[-3]_19 chrVII:110417-110895 2.2e-09 55_[+3]_16 chrXI:313189-313657 2.2e-09 64_[+3]_7 chrX:538364-538464 2.7e-09 52_[-3]_19 chrXIV:6490-7171 7.1e-09 56_[+3]_15 chrVII:779410-779913 1.1e-08 10_[-3]_61 chrXII:11026-11987 1.2e-08 42_[+3]_29 chrIV:1256857-1257277 1.4e-08 27_[+3]_44 chrX:745215-745315 2.8e-08 44_[-3]_27 chrIV:884189-884641 5.7e-08 1_[-3]_70 chrXI:302710-303231 8.3e-08 3_[-3]_68 chrX:415800-415900 8.3e-08 27_[+3]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBGNRHRTBMTAACCAYTAMACTAH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AVAASBGNRHRTBMTAACCAYTAMACTAH width=29 seqs=39 chrXIII:808020-808554 ( 46) AGAACCGAAAGTGATAACCACTACACTAT 1 chrIV:520736-521185 ( 68) AAAACCGAAAGTGATAACCACTACACTAT 1 chrIV:802560-803029 ( 24) AAAACCGAAAGTGATAACCACTACACTAT 1 chrII:350635-351113 ( 9) AAAACCGAAAGTGATAACCACTACACTAT 1 chrXII:448462-448953 ( 30) AAAACCGAAAGTGATAACCACTACACTAT 1 chrV:130850-131411 ( 39) AAAACCGAAAGTGATAACCACTACACTAT 1 chrIX:197315-197940 ( 21) AGAACGTGATGTGATAGCCGTTACACTAC 1 chrIV:1016963-1017500 ( 63) AGAACGTGATGTGATAGCCGTTACACTAC 1 chrX:541326-541426 ( 18) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrIV:568693-569220 ( 64) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrXII:426909-427457 ( 5) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrVII:531410-531795 ( 64) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrX:374194-374294 ( 32) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrXI:513067-513637 ( 67) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrIV:1075308-1075737 ( 38) TGAAGGCAACGTGATAGCCGCTACACTAT 1 chrIX:370228-370609 ( 55) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrVII:541598-542166 ( 24) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXVI:209949-210556 ( 27) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrVII:401121-401993 ( 57) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrVII:405120-405866 ( 33) AGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrVII:735816-736887 ( 45) AGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrXIII:131604-132088 ( 66) AGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrXIII:747778-748160 ( 10) AGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrVIII:62558-62922 ( 71) ACAACGATGTGTACTAACCACTATACTAA 1 chrVIII:466774-467228 ( 45) ACAAGTGCAACGCTCTACCACTAAGCTAA 1 chrV:206825-207878 ( 62) ACAACGATGTGTACTAACCACTATACTAA 1 chrXVI:744058-744592 ( 15) ACAAGTGCAACGCTCTACCACTAAGCTAA 1 chrVII:1004023-1004415 ( 53) ACAAGTGCAACGCTCTACCACTAAGCTAA 1 chrVII:110417-110895 ( 56) ACAACGATGTGTACTAACCACTATACTAA 1 chrXI:313189-313657 ( 65) ACAACGATGTGTACTAACCACTATACTAA 1 chrX:538364-538464 ( 53) AGGAGGGAGACGCGTTACCATTACGCCAA 1 chrXIV:6490-7171 ( 57) TCCACCGCCCATCATAACCGTTACCCTCC 1 chrVII:779410-779913 ( 11) GAAGGGTGGGATGATAACCACTACACTAA 1 chrXII:11026-11987 ( 43) ACCACCGTCCACCATAACCGTTACCCTCC 1 chrIV:1256857-1257277 ( 28) GGAAGCATGAATTCTAACCACTGAACCAC 1 chrX:745215-745315 ( 45) TCCACCGTCCACCATAACCGTTACCCTCC 1 chrIV:884189-884641 ( 2) TAAGCACGAAGCTCTAACCACTGAGCTAC 1 chrXI:302710-303231 ( 4) TGGAGTCGAAAGCTCTACCATTGAGCCAC 1 chrX:415800-415900 ( 28) TGGAGTCGAAAGCTCTACCATTGAGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBGNRHRTBMTAACCAYTAMACTAH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 9.51413 E= 2.8e-112 137 -1193 -191 -100 -13 109 68 -1193 146 -132 -132 -1193 146 -1193 -32 -1193 -1193 141 134 -1193 -358 109 79 -41 -126 9 134 -78 0 41 41 -78 66 26 55 -1193 59 41 -291 -26 12 9 126 -1193 -1193 -132 41 112 -158 79 90 -58 50 68 -59 -126 -1193 -59 -1193 150 94 -1193 -32 -26 122 -1193 55 -1193 -1193 238 -1193 -1193 -1193 238 -1193 -1193 127 -1193 41 -1193 -1193 118 -1193 87 -1193 -1193 -1193 170 154 -1193 -91 -1193 12 155 -1193 -158 106 -132 55 -1193 -1193 238 -1193 -1193 -1193 9 -1193 137 159 -132 -1193 -1193 -41 79 -1193 50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBGNRHRTBMTAACCAYTAMACTAH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 39 E= 2.8e-112 0.794872 0.000000 0.051282 0.153846 0.282051 0.410256 0.307692 0.000000 0.846154 0.076923 0.076923 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 0.512821 0.487179 0.000000 0.025641 0.410256 0.333333 0.230769 0.128205 0.205128 0.487179 0.179487 0.307692 0.256410 0.256410 0.179487 0.487179 0.230769 0.282051 0.000000 0.461538 0.256410 0.025641 0.256410 0.333333 0.205128 0.461538 0.000000 0.000000 0.076923 0.256410 0.666667 0.102564 0.333333 0.358974 0.205128 0.435897 0.307692 0.128205 0.128205 0.000000 0.128205 0.000000 0.871795 0.589744 0.000000 0.153846 0.256410 0.717949 0.000000 0.282051 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.743590 0.000000 0.256410 0.000000 0.000000 0.435897 0.000000 0.564103 0.000000 0.000000 0.000000 1.000000 0.897436 0.000000 0.102564 0.000000 0.333333 0.564103 0.000000 0.102564 0.641026 0.076923 0.282051 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.205128 0.000000 0.794872 0.923077 0.076923 0.000000 0.000000 0.230769 0.333333 0.000000 0.435897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBGNRHRTBMTAACCAYTAMACTAH MEME-3 regular expression -------------------------------------------------------------------------------- A[CGA]AA[CG][CGT][GC][ACG][AGC][ACT][GAC][TG][GCT][AC]T[AT][AG]CC[AG][TC]TA[CA][AG]C[TC]A[TCA] -------------------------------------------------------------------------------- Time 976.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:332308-334306 4.32e-01 100 chrVIII:132787-133355 5.39e-11 13_[+1(5.04e-07)]_23_[-2(3.10e-11)]_\ 14 chrXIV:675686-676033 5.78e-01 100 chrVI:222897-224160 8.05e-02 100 chrXI:163275-164730 4.08e-01 100 chrI:141560-143693 6.94e-01 100 chrIV:1359207-1361221 6.49e-01 100 chrXVI:817989-818404 4.63e-01 100 chrXIII:540232-541066 4.37e-01 100 chrVII:401121-401993 2.83e-12 28_[+1(1.11e-09)]_7_[+3(2.66e-10)]_\ 15 chrVII:276980-278732 3.70e-02 37_[+3(9.08e-05)]_34 chrXI:313189-313657 1.49e-09 36_[+1(1.32e-06)]_7_[+3(2.24e-09)]_\ 7 chrIV:616294-617550 2.73e-01 100 chrIII:127503-127930 2.88e-06 49_[+2(5.31e-10)]_22 chrXVI:338607-339135 2.36e-04 35_[+1(1.25e-06)]_44 chrIV:1075308-1075737 1.42e-14 8_[+1(1.99e-10)]_8_[+3(5.51e-11)]_\ 34 chrXI:513067-513637 5.23e-12 38_[+1(6.20e-08)]_7_[+3(4.10e-11)]_\ 5 chrIX:325495-326123 1.79e-04 31_[-1(2.09e-08)]_48 chrXIV:275779-276674 8.25e-01 100 chrIV:975896-976783 3.11e-01 100 chrXII:366016-366561 3.80e-01 100 chrIX:323970-325029 1.42e-02 32_[-1(9.09e-05)]_47 chrII:226823-227404 5.39e-11 11_[+2(3.10e-11)]_23_[-1(5.04e-07)]_\ 16 chrXI:382142-382508 2.06e-03 63_[+3(5.80e-05)]_8 chrXVI:66919-67480 1.24e-01 100 chrVII:316621-317399 1.69e-01 100 chrXV:594253-594650 8.19e-01 100 chrXII:11026-11987 6.79e-05 42_[+3(1.18e-08)]_29 chrVII:806088-808038 3.11e-01 100 chrXV:710016-710535 3.98e-03 17_[-1(1.25e-06)]_62 chrXIII:23692-26467 6.94e-01 100 chrV:130850-131411 3.00e-17 10_[+1(2.52e-09)]_7_[+3(4.69e-14)]_\ 33 chrXVI:520103-520523 7.87e-01 100 chrII:555492-558519 1.82e-02 34_[+1(4.95e-05)]_45 chrIV:721058-722834 1.07e-01 100 chrXV:464240-464711 9.62e-06 24_[+2(3.21e-09)]_47 chrIV:945633-946627 6.24e-02 100 chrXIII:661047-662282 7.83e-01 100 chrVI:204784-205202 6.77e-11 24_[-2(8.24e-13)]_47 chrXII:710308-710987 1.07e-01 100 chrVIII:145870-147082 6.24e-02 100 chrX:454290-454390 6.87e-01 100 chrVII:185515-186129 6.28e-01 100 chrVIII:388688-389194 1.84e-06 10_[+1(6.15e-10)]_69 chrXII:809087-812033 7.72e-01 100 chrXIII:195901-196443 3.55e-06 19_[-2(3.21e-09)]_52 chrXIV:63114-64598 7.05e-01 100 chrXIV:560551-560986 1.54e-06 18_[-2(2.75e-10)]_53 chrVII:319079-320182 7.24e-02 100 chrXVI:768950-771142 9.91e-01 100 chrXII:1042945-1043797 6.32e-01 100 chrIX:131796-132098 9.09e-01 100 chrXV:424214-424902 5.39e-01 100 chrXIII:183705-184185 7.80e-15 11_[+1(2.46e-11)]_12_[-2(8.86e-10)]_\ 27 chrVII:876186-876933 9.75e-01 100 chrXI:578754-579392 3.22e-05 7_[-1(4.20e-09)]_23_[-1(8.21e-05)]_\ 28 chrX:374194-374294 4.40e-13 3_[+1(6.20e-08)]_7_[+3(4.10e-11)]_\ 40 chrVI:180696-181248 3.51e-07 60_[+1(2.46e-11)]_19 chrXVI:209949-210556 2.01e-06 26_[+3(2.66e-10)]_45 chrVI:95477-95895 6.75e-02 100 chrII:9377-9999 1.79e-01 100 chrXII:793643-797383 9.95e-01 100 chrXII:5475-5927 6.15e-02 46_[-2(9.82e-05)]_25 chrXI:67666-69067 1.41e-01 100 chrV:268898-270672 9.79e-01 100 chrIV:1079072-1081042 3.96e-01 100 chrVII:110417-110895 1.49e-09 27_[+1(1.32e-06)]_7_[+3(2.24e-09)]_\ 16 chrXIII:302780-303112 6.53e-01 100 chrXIII:878623-881151 7.48e-01 100 chrIII:27041-29369 2.92e-03 30_[+3(7.11e-06)]_41 chrXII:498485-499862 7.37e-01 100 chrVII:1000229-1000614 5.28e-01 100 chrXI:112421-116043 8.35e-01 100 chrIII:107151-107820 8.77e-01 100 chrXII:962813-963282 5.22e-06 29_[-2(7.18e-09)]_42 chrXVI:214344-216016 4.57e-01 100 chrV:321910-323483 6.04e-01 100 chrXII:424093-424512 8.02e-01 100 chrIV:1269878-1271085 1.01e-01 100 chrXII:198226-199710 1.98e-01 100 chrVII:122047-122533 1.98e-12 28_[+2(1.83e-08)]_14_[-1(6.15e-10)]_\ 8 chrXVI:406202-407817 8.41e-01 100 chrVI:63926-65369 8.30e-01 100 chrII:796729-799358 2.38e-01 100 chrII:326547-327152 1.87e-11 1_[+1(3.71e-09)]_15_[-2(2.23e-08)]_\ 34 chrXII:373684-374667 6.24e-02 100 chrII:45579-46669 5.36e-01 100 chrXII:920890-922598 2.91e-01 100 chrXV:866539-868152 1.41e-01 100 chrVIII:85166-85563 2.32e-07 28_[-2(6.23e-11)]_43 chrI:71776-73660 7.09e-01 100 chrXI:74399-74889 4.31e-11 29_[+2(5.31e-10)]_15_[-1(8.15e-08)]_\ 6 chrXV:987111-987898 2.11e-02 3_[-2(2.95e-05)]_68 chrVII:823267-823715 4.22e-07 40_[+2(6.23e-11)]_31 chrXV:24578-24916 5.06e-01 100 chrVII:730943-731407 2.06e-11 11_[+2(5.31e-10)]_15_[-1(8.15e-08)]_\ 24 chrIII:131364-132055 6.91e-03 51_[-2(2.54e-05)]_20 chrXII:568036-569102 1.87e-01 100 chrXVI:810411-811152 9.50e-01 100 chrVIII:451284-453049 6.21e-01 100 chrV:498326-498811 7.51e-01 100 chrII:266211-266675 7.91e-05 27_[-1(2.09e-08)]_52 chrXVI:572057-572584 7.52e-09 39_[-1(2.46e-11)]_40 chrXII:1038583-1042635 3.76e-01 100 chrXII:348062-348801 8.94e-01 100 chrIII:3861-4486 3.80e-01 100 chrIV:434014-434539 1.79e-04 46_[+1(2.09e-08)]_33 chrXVI:879883-881199 2.11e-01 100 chrXII:1051933-1052585 3.57e-01 100 chrXIV:738532-739964 9.43e-01 100 chrXIII:123230-124700 7.21e-01 100 chrIX:210490-211218 9.28e-01 100 chrV:522630-522967 5.71e-01 100 chrVI:210480-210880 1.57e-01 100 chrV:66929-69669 9.05e-01 100 chrIV:667736-668523 9.67e-01 100 chrXV:407610-408227 7.61e-01 100 chrXII:954015-954717 3.05e-01 100 chrIX:204826-205406 5.20e-01 100 chrXV:282003-282634 8.24e-01 100 chrVII:766158-766472 2.19e-01 100 chrXIII:549821-553239 5.83e-01 100 chrVIII:174963-175839 9.49e-01 100 chrXVI:860146-860680 7.80e-15 15_[+2(8.86e-10)]_12_[-1(2.46e-11)]_\ 23 chrV:430982-431547 5.66e-02 100 chrVII:531410-531795 6.05e-10 63_[-3(4.10e-11)]_8 chrXV:980485-981050 7.21e-07 40_[-1(6.15e-10)]_39 chrXIII:747778-748160 2.22e-07 9_[+3(1.57e-09)]_62 chrXV:779684-781009 2.26e-01 100 chrX:538364-538464 5.86e-07 52_[-3(2.65e-09)]_19 chrVII:700410-701266 9.99e-01 100 chrX:422640-422740 2.58e-06 37_[+2(9.00e-09)]_34 chrXII:636486-640315 5.16e-02 100 chrXII:262382-263988 8.63e-01 100 chrIV:644939-645380 1.28e-05 52_[+1(2.52e-09)]_27 chrXIII:586421-586885 1.84e-05 41_[+1(3.26e-09)]_38 chrXIV:241392-241759 4.58e-02 9_[-1(4.78e-05)]_70 chrIV:1449861-1451281 1.32e-01 100 chrVII:541598-542166 2.83e-12 23_[-3(2.66e-10)]_7_[-1(1.11e-09)]_\ 20 chrXI:517738-518153 9.94e-01 100 chrXI:326065-327618 3.61e-01 100 chrV:311419-312288 6.88e-02 100 chrXI:610915-611526 9.95e-01 100 chrXV:571617-572156 9.95e-01 100 chrIV:1300940-1301332 5.67e-01 100 chrIV:1354516-1356031 7.83e-01 100 chrVII:483239-483822 2.76e-03 4_[-1(1.17e-06)]_75 chrX:607822-607922 2.71e-01 100 chrXI:110324-110573 8.43e-02 100 chrVIII:74768-76298 3.11e-01 100 chrXIII:861143-861656 4.81e-01 100 chrVII:1004023-1004415 5.34e-07 52_[-3(2.24e-09)]_19 chrXIII:420260-420858 5.02e-01 100 chrII:392482-394753 2.21e-01 100 chrVIII:358288-358755 9.37e-11 15_[+1(5.65e-08)]_33_[-2(1.44e-09)]_\ 2 chrIV:1468749-1469106 5.53e-01 100 chrVII:648735-649367 5.62e-01 100 chrX:125005-125105 4.38e-01 100 chrIV:385990-387568 5.39e-01 100 chrXII:489298-489615 1.58e-01 100 chrVIII:114069-116453 5.64e-01 100 chrXIII:267690-268885 9.44e-01 100 chrVI:101188-101600 2.24e-06 31_[+2(3.21e-09)]_40 chrVII:310505-312401 6.02e-01 100 chrXII:1064052-1065366 1.61e-01 100 chrXII:426909-427457 5.23e-12 4_[-3(4.10e-11)]_7_[-1(6.20e-08)]_\ 39 chrXII:1028161-1028615 3.62e-01 100 chrII:544490-544849 4.23e-01 100 chrIV:1278296-1279066 5.12e-01 100 chrXIV:776741-777129 7.59e-01 100 chrX:233707-233807 9.88e-06 43_[+2(9.02e-06)]_28 chrIV:490272-492678 9.68e-01 100 chrXI:430542-431719 9.64e-01 100 chrII:680294-682262 5.59e-01 100 chrVIII:134053-134537 3.41e-01 100 chrXIV:493483-495627 9.95e-01 100 chrX:424281-424381 5.22e-06 33_[-2(7.18e-09)]_38 chrII:135993-136298 1.10e-01 100 chrX:396558-396658 7.80e-15 13_[+1(2.46e-11)]_12_[-2(8.86e-10)]_\ 25 chrVI:106510-106853 1.34e-01 100 chrXII:949324-953705 1.65e-01 100 chrXVI:818821-819827 8.79e-01 100 chrV:487071-487596 1.23e-05 56_[+1(1.11e-09)]_23 chrVIII:148929-149252 3.82e-02 41_[+2(6.53e-05)]_30 chrIV:541200-542110 8.87e-01 100 chrXV:504987-505491 3.61e-01 100 chrIX:126961-128984 8.21e-01 100 chrXIV:771938-772360 3.14e-01 100 chrX:414800-414900 1.12e-06 22_[-1(6.15e-10)]_57 chrXII:645672-646210 4.98e-02 100 chrXII:522152-523579 8.11e-01 100 chrVII:930767-931206 7.80e-15 25_[+1(2.46e-11)]_12_[-2(8.86e-10)]_\ 13 chrXII:805419-807204 7.22e-01 100 chrIV:579040-580806 4.17e-02 100 chrXVI:55805-56555 1.89e-04 47_[+1(7.45e-08)]_32 chrVIII:122214-122662 1.86e-01 100 chrXIV:720737-723680 5.18e-01 100 chrX:542777-542877 1.45e-01 100 chrVIII:272218-276005 8.92e-01 100 chrV:61031-62167 3.74e-01 100 chrXIV:727559-729370 1.59e-01 100 chrXIII:768194-768632 7.10e-17 14_[+1(1.41e-10)]_14_[-2(8.24e-13)]_\ 22 chrXIII:161760-164341 1.13e-01 100 chrXIV:374651-375107 1.01e-06 39_[+2(7.25e-10)]_32 chrVII:555110-557998 2.53e-02 100 chrIII:168046-169286 5.99e-01 100 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chrV:42145-42440 7.71e-01 100 chrI:68213-68971 4.34e-01 100 chrIV:1300375-1300783 2.40e-01 100 chrXI:665571-666801 7.95e-01 100 chrIX:197315-197940 1.92e-13 20_[-3(1.34e-11)]_7_[-1(1.11e-09)]_\ 23 chrXV:444593-446189 5.73e-01 100 chrV:288227-288732 3.97e-10 22_[+1(2.08e-06)]_23_[-2(7.12e-11)]_\ 5 chrXIII:751334-751655 3.74e-01 100 chrXV:832189-832836 5.81e-01 100 chrV:482909-484083 6.17e-02 100 chrXIV:569707-570144 6.53e-16 [+1(8.27e-10)]_15_[-2(3.48e-13)]_35 chrXIII:572739-573139 3.18e-10 2_[+1(1.90e-07)]_14_[-2(9.00e-09)]_\ 34 chrVII:364903-366732 9.54e-01 100 chrXIII:736089-737167 4.16e-01 100 chrXIII:362475-363282 1.00e+00 100 chrVII:706302-707393 6.85e-01 100 chrIII:262583-263090 9.96e-02 100 chrXVI:645214-646229 1.67e-01 100 chrIV:45186-46199 5.17e-01 100 chrXII:448462-448953 2.37e-17 1_[+1(2.52e-09)]_7_[+3(4.69e-14)]_\ 42 chrXIV:301062-303746 9.87e-01 100 chrXV:841408-842960 7.76e-01 100 chrIX:394388-395129 8.36e-01 100 chrXII:605146-605640 2.45e-10 60_[-2(7.18e-09)]_11 chrX:160004-160104 5.12e-01 100 chrII:167763-169772 7.30e-01 100 chrII:165046-165552 4.59e-01 100 chrXV:232083-232668 8.82e-01 100 chrIV:358026-358465 9.36e-01 100 chrXVI:731622-732290 5.69e-01 100 chrXV:92121-94807 9.01e-01 100 chrIV:1011539-1013977 4.34e-01 100 chrVIII:237751-238136 2.15e-06 17_[-2(1.44e-09)]_54 chrXV:226440-226878 7.80e-15 10_[+1(2.46e-11)]_12_[-2(8.86e-10)]_\ 28 chrIV:1352272-1352716 1.98e-12 30_[+1(6.15e-10)]_14_[-2(1.83e-08)]_\ 6 chrXII:656695-657244 7.10e-17 23_[+1(1.41e-10)]_14_[-2(8.24e-13)]_\ 13 chrV:396179-398010 6.06e-01 100 chrII:350635-351113 3.00e-17 8_[-3(4.69e-14)]_7_[-1(2.52e-09)]_\ 35 chrXVI:188501-189097 3.81e-01 100 chrII:604083-607116 3.35e-01 100 chrXVI:40049-40683 7.26e-02 100 chrXV:391628-392003 3.15e-01 100 chrXI:202274-203333 6.24e-02 100 chrXI:258347-260026 3.80e-01 100 chrVI:4478-5443 2.62e-02 100 chrX:58804-58904 2.57e-04 58_[+1(2.09e-08)]_21 chrV:362162-362520 1.94e-01 100 chrXI:379405-379931 7.93e-08 9_[-2(7.09e-05)]_23_[+2(6.23e-11)]_\ 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chrXVI:699909-700718 1.00e+00 100 chrX:90030-90130 9.30e-01 100 chrV:6169-6686 2.64e-01 100 chrXIII:224047-224383 6.86e-01 100 chrVI:269461-270159 1.22e-01 100 chrVII:397914-398544 8.12e-02 100 chrII:504463-505188 4.88e-01 100 chrVIII:34398-36320 1.40e-02 63_[-2(6.43e-06)]_8 chrXV:80414-83485 5.10e-01 100 chrII:370850-371092 2.04e-01 100 chrV:135198-135698 1.98e-12 35_[+1(6.15e-10)]_14_[-2(1.83e-08)]_\ 1 chrXII:241603-243669 9.90e-01 100 chrXII:92362-92843 1.84e-06 68_[-1(6.15e-10)]_11 chrXVI:463940-464237 2.91e-01 100 chrXVI:74984-76727 4.19e-01 100 chrX:442398-442498 5.55e-01 100 chrXIII:378987-379593 1.56e-04 71_[+1(7.45e-08)]_8 chrIII:70354-73335 2.41e-01 100 chrXVI:377909-379001 2.10e-01 100 chrXII:214694-215165 6.42e-16 12_[+1(5.59e-11)]_14_[-2(4.75e-11)]_\ 24 chrX:115594-115694 3.02e-01 100 chrVII:436948-439937 3.98e-01 100 chrV:249577-250779 1.30e-02 30_[+1(9.09e-05)]_49 chrXV:487181-487699 2.52e-06 48_[+2(5.31e-10)]_23 chrXII:784134-784655 4.03e-10 9_[+2(2.45e-10)]_41_[-1(2.52e-05)] chrXIV:632424-632910 2.69e-05 25_[-1(8.15e-08)]_54 chrXII:975792-976246 8.50e-11 22_[+1(8.15e-08)]_15_[-2(5.31e-10)]_\ 13 chrVI:226435-226927 1.38e-06 65_[+1(6.15e-10)]_14 chrX:415800-415900 3.00e-06 27_[+3(8.25e-08)]_44 chrVII:405120-405866 7.28e-12 32_[-3(1.57e-09)]_7_[-1(5.38e-09)]_\ 11 chrVII:896856-897940 7.88e-01 100 chrXV:274454-274968 6.70e-08 11_[+2(2.45e-10)]_60 chrXIV:567891-568504 2.40e-06 40_[-1(6.15e-10)]_39 chrXIV:229551-231070 7.30e-01 100 chrVII:328374-329229 9.53e-01 100 chrXV:79606-80157 3.07e-01 100 chrXII:731917-732318 9.32e-09 22_[+2(7.66e-12)]_49 chrXIV:102463-102961 1.94e-06 53_[+2(5.31e-10)]_18 chrVII:544376-545995 7.71e-01 100 chrIX:370228-370609 3.36e-06 54_[-3(2.66e-10)]_17 chrX:663451-663551 5.89e-01 100 chrX:291082-291182 5.21e-01 100 chrX:68956-69056 3.49e-01 100 chrVI:220811-222068 1.58e-01 100 chrXV:167966-168451 3.39e-01 100 chrXV:1003925-1005011 1.00e+00 100 chrXIII:463338-463894 1.65e-04 29_[-1(6.20e-08)]_50 chrX:79267-79367 9.96e-01 100 chrXI:24838-26495 9.63e-01 100 chrIV:1256857-1257277 2.90e-07 27_[+3(1.40e-08)]_44 chrXV:228102-228631 1.01e-10 14_[+2(5.31e-10)]_15_[-1(8.15e-08)]_\ 21 chrVIII:466774-467228 5.34e-07 44_[-3(2.24e-09)]_27 chrVIII:475474-475921 3.18e-06 67_[+1(1.99e-10)]_12 chrXIII:756074-756677 9.96e-01 100 chrXIV:529239-529913 5.25e-02 100 chrX:541326-541426 4.40e-13 17_[-3(4.10e-11)]_7_[-1(6.20e-08)]_\ 26 chrIV:1175588-1176071 9.90e-07 49_[+2(9.00e-09)]_22 chrV:377961-378365 9.46e-01 100 chrX:531609-531709 8.47e-01 100 chrXIV:108430-113106 9.06e-01 100 chrIX:141106-142631 5.65e-02 100 chrIII:123344-124150 7.87e-01 100 chrV:354709-355400 5.45e-01 100 chrIV:520736-521185 6.55e-12 67_[-3(4.69e-14)]_4 chrVII:147869-149530 9.61e-01 100 chrIX:316130-318208 3.64e-01 100 chrX:119357-119457 9.46e-01 100 chrIII:228633-229727 9.78e-01 100 chrII:140467-140841 9.11e-01 100 chrXVI:302652-304346 5.25e-01 100 chrVIII:62558-62922 2.02e-06 70_[-3(2.24e-09)]_1 chrVII:828465-828977 2.37e-05 60_[+1(5.38e-09)]_19 chrXI:302710-303231 6.54e-09 3_[-3(8.25e-08)]_41_[-1(7.45e-08)]_\ 6 chrXIII:872680-872969 5.46e-01 100 chrVIII:562272-562584 4.75e-01 100 chrVII:914785-915205 3.98e-01 100 chrXIII:145879-147546 1.52e-01 100 chrXII:368169-371421 6.01e-01 100 chrV:176895-177443 8.70e-06 21_[-1(1.11e-09)]_58 chrXI:140786-141484 7.83e-01 100 chrIV:980780-981289 5.35e-07 42_[-2(3.10e-11)]_29 chrVII:702849-703266 6.74e-01 100 chrXV:758890-759543 5.45e-01 100 chrX:378171-378271 4.43e-07 46_[+2(6.23e-11)]_25 chrVII:786914-788768 9.94e-01 100 chrIV:519574-519909 5.22e-06 51_[+2(7.18e-09)]_20 chrIV:410170-410673 7.10e-17 7_[+2(8.24e-13)]_14_[-1(1.41e-10)]_\ 29 chrXVI:821634-822502 4.25e-01 100 chrX:348796-348896 5.66e-01 100 chrII:413855-415920 3.04e-01 100 chrXIII:510743-511694 3.88e-01 100 chrXV:671067-671421 8.78e-01 100 chrIII:265408-268210 8.28e-01 100 chrIX:255035-258106 7.31e-01 100 chrXIV:545622-547450 9.28e-01 100 chrVI:167266-167702 5.13e-05 61_[-1(8.91e-08)]_18 chrIV:1362287-1362641 6.31e-01 100 chrXV:216240-216694 3.49e-01 100 chrXIV:64908-65538 8.72e-01 100 chrIV:555381-556676 4.33e-02 12_[+2(9.06e-05)]_59 chrVIII:455536-456118 1.95e-01 100 chrIX:0-240 6.95e-01 100 chrXII:83995-84457 1.58e-01 100 chrIII:176894-178823 7.08e-01 100 chrI:180908-181499 5.13e-01 100 chrVIII:505802-506222 9.91e-01 100 chrXVI:560002-560483 9.37e-11 14_[+1(5.65e-08)]_33_[-2(1.44e-09)]_\ 3 chrXIII:504680-505240 4.30e-01 100 chrV:443041-443503 1.06e-09 24_[-2(3.48e-13)]_47 chrII:44981-45384 7.36e-01 100 chrX:745215-745315 9.87e-08 13_[+2(9.24e-07)]_2_[-3(2.84e-08)]_\ 27 chrVI:86399-86999 4.70e-01 100 chrXVI:641207-641643 3.60e-02 12_[+2(4.41e-05)]_59 chrVII:479146-482990 7.50e-02 100 chrVII:938984-939695 9.60e-01 100 chrXV:796710-798426 9.23e-01 100 chrXII:897695-899738 5.57e-01 100 chrXIV:602139-602527 6.53e-16 28_[+2(3.48e-13)]_15_[-1(8.27e-10)]_\ 7 chrXI:518586-521136 6.35e-01 100 chrIV:233867-235249 7.24e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************