******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:372864-375874 1.0000 100 chrVIII:358270-358780 1.0000 100 chrXV:116380-117755 1.0000 100 chrVII:205351-206462 1.0000 100 chrXI:306839-307384 1.0000 100 chrI:166057-166605 1.0000 100 chrIV:1344819-1345776 1.0000 100 chrXVI:828428-828590 1.0000 100 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chrIX:420750-421008 1.0000 100 chrVIII:84783-85568 1.0000 100 chrIV:218275-218839 1.0000 100 chrIV:118405-118892 1.0000 100 chrXV:779768-780995 1.0000 100 chrIX:142071-143060 1.0000 100 chrVII:959320-959610 1.0000 100 chrVIII:119689-121876 1.0000 100 chrXV:663427-664095 1.0000 100 chrXIII:752970-754263 1.0000 100 chrVIII:516661-519102 1.0000 100 chrXI:146763-147344 1.0000 100 chrXII:673049-675146 1.0000 100 chrVI:180694-181235 1.0000 100 chrII:193306-193996 1.0000 100 chrXIII:807691-808552 1.0000 100 chrII:234720-236073 1.0000 100 chrXI:431860-433014 1.0000 100 chrXI:517750-518323 1.0000 100 chrIV:1161494-1161881 1.0000 100 chrXIII:501069-502062 1.0000 100 chrIV:308112-310218 1.0000 100 chrIII:107066-107841 1.0000 100 chrVII:700084-701243 1.0000 100 chrVII:976760-977249 1.0000 100 chrXV:514397-514792 1.0000 100 chrXIII:650695-653016 1.0000 100 chrIV:129431-130869 1.0000 100 chrXV:854024-854421 1.0000 100 chrXIV:104610-105162 1.0000 100 chrII:642835-643265 1.0000 100 chrXV:832220-832881 1.0000 100 chrIV:410194-410755 1.0000 100 chrXIV:288785-290978 1.0000 100 chrXV:960898-963083 1.0000 100 chrIV:448826-450091 1.0000 100 chrII:165064-165848 1.0000 100 chrIII:168099-168609 1.0000 100 chrV:61002-62148 1.0000 100 chrIV:802575-803008 1.0000 100 chrX:517662-517762 1.0000 100 chrIV:1016436-1017479 1.0000 100 chrXV:770024-770596 1.0000 100 chrVII:650983-651304 1.0000 100 chrVII:914603-915248 1.0000 100 chrXVI:869321-870476 1.0000 100 chrII:45530-46936 1.0000 100 chrV:166828-167668 1.0000 100 chrV:396693-397984 1.0000 100 chrII:168327-169714 1.0000 100 chrVII:774154-774620 1.0000 100 chrXIV:63177-64656 1.0000 100 chrIV:995392-996224 1.0000 100 chrIII:58679-59106 1.0000 100 chrXIII:158469-158821 1.0000 100 chrIV:915087-916240 1.0000 100 chrVII:930750-931211 1.0000 100 chrX:348834-348934 1.0000 100 chrX:139163-139263 1.0000 100 chrI:71547-73738 1.0000 100 chrXIV:585421-586610 1.0000 100 chrXI:46336-46972 1.0000 100 chrVI:224275-225390 1.0000 100 chrVII:779419-779940 1.0000 100 chrIII:224934-225427 1.0000 100 chrXII:167766-168245 1.0000 100 chrVII:786893-788724 1.0000 100 chrVII:794164-794723 1.0000 100 chrIV:385260-387789 1.0000 100 chrVII:1004036-1004410 1.0000 100 chrIV:83356-83843 1.0000 100 chrXI:67290-69214 1.0000 100 chrIV:1116837-1117290 1.0000 100 chrXV:967966-968452 1.0000 100 chrVII:544383-546125 1.0000 100 chrXIV:602086-602552 1.0000 100 chrII:604170-607729 1.0000 100 chrII:197251-197851 1.0000 100 chrII:266178-266694 1.0000 100 chrIV:507575-510009 1.0000 100 chrXIV:102491-103157 1.0000 100 chrIV:1086389-1087422 1.0000 100 chrVIII:447807-448503 1.0000 100 chrXII:1064953-1065260 1.0000 100 chrVII:726518-726744 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.300 C 0.200 G 0.200 T 0.300 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF SSGGRATCGAACCSVSGACCT MEME-1 width = 21 sites = 87 llr = 1461 E-value = 1.8e-274 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVSGACCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :12:66:::aa::12126::: pos.-specific C 54:::1:7:::a7533:1662 probability G 357a41::a::::35581121 matrix T 2::::2a3::::21:2:2316 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * ****** * Entropy 1.2 * ****** * (24.2 bits) 1.0 **** ******* * ** 0.7 ***** ********* * ** 0.5 ***** *********** *** 0.2 ********************* 0.0 --------------------- Multilevel CGGGAATCGAACCCGGGACCT consensus GCA G T TGCC T C sequence AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVSGACCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123346-123779 + 74 5.20e-13 TGGGGCGAGC CGGGACTCGAACCCGGGACCT CCCGCA chrIV:1256807-1257258 + 35 4.13e-12 ATGCGGAAGC CGGGAATCGAACCCGGGCCCC ATGCTTGGGA chrIV:83356-83843 - 40 1.77e-11 TTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrVII:930750-931211 + 32 1.77e-11 ATGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrVI:180694-181235 + 69 1.77e-11 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXV:281709-282686 - 58 1.77e-11 ATGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrVI:162057-162466 - 58 1.77e-11 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrVII:794164-794723 - 67 5.53e-11 ATGGACGCAA CCGGAATCGAACCGATGACCT CTTCCTTGCA chrVII:774154-774620 - 55 5.53e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrXV:854024-854421 + 24 5.53e-11 TTGGACGCAA CCGGAATCGAACCGATGACCT CTTCCTTGCA chrXI:517750-518323 - 45 5.53e-11 ATGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrXII:656683-657192 + 56 5.53e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrX:197121-197221 + 1 5.53e-11 . CCGGAATCGAACCGGAGACCT CTCCCATGCT chrVIII:475485-475887 + 79 5.53e-11 ATGTTCCAAC CGAGGATCGAACTCGGGACCT T chrXVI:856489-857454 - 24 5.53e-11 ATGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrVI:204771-205182 + 7 5.53e-11 ACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrXII:214614-215155 + 58 5.53e-11 ATGGACGCAA CCGGAATCGAACCGATGACCT CTTCCTTGCA chrI:166057-166605 - 29 5.53e-11 TTGGACGCAA CCGGAATCGAACCGATGACCT CTTCCTTGCA chrXV:594014-594673 + 70 1.30e-10 ATGCGCAAGC CGGGAATCGAACCCGGGCCTC ATGCTTGGGA chrVII:779419-779940 - 29 3.83e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrII:197251-197851 - 37 7.81e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrIV:667764-668219 + 75 7.81e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCG chrV:551095-551562 + 16 7.81e-10 TTGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXIV:569641-570153 + 29 7.81e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXI:307893-308449 + 32 8.96e-10 TTGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrV:438518-439016 - 27 8.96e-10 TTGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:586400-586904 + 43 8.96e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrV:469269-469711 - 61 8.96e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXI:379443-379971 - 67 8.96e-10 TTGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrX:414746-414846 - 36 1.17e-09 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrVII:876054-876860 - 30 1.17e-09 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrV:135196-135682 + 45 1.17e-09 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrIX:299979-300498 + 49 1.17e-09 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrVIII:388685-389199 + 10 1.33e-09 GGGGCGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrXII:92379-92837 - 63 1.33e-09 AGGGGCGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrXIV:567902-568559 - 8 1.33e-09 AGGGGCGAGC TGGGAATTGAACCCAGGGCCT CTCGCAT chrIII:168099-168609 + 6 1.52e-09 CCTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrV:130713-131416 + 77 1.52e-09 TAGGTCTTAC CCGGATTCGAACCGGGGTTGT TCG chrII:350626-351138 - 37 1.52e-09 AAGGTCTTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrXII:448424-448916 + 39 1.52e-09 AAGGTCCTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrII:326601-327088 + 7 1.73e-09 TCCAAC CGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrIV:488478-489182 + 26 1.73e-09 CTGATCCAAC CGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrII:644977-645402 - 70 1.73e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrV:487032-487597 + 76 1.73e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACG chrVII:541617-542144 - 62 1.73e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrX:538385-538485 - 72 2.84e-09 GTTCCGTA CGGGACTCGAACCCGCAGTCT TCTCCTTAGG chrXVI:768931-769478 + 62 9.84e-09 ACTCCTCATA GGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXI:578763-579381 - 9 9.84e-09 ACTCCTCATA GGGGGCTCGAACCCCTGACAT TTCGGTAT chrXIII:131588-132078 + 51 2.00e-08 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrX:374181-374281 + 36 2.00e-08 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrIV:884171-884703 - 77 2.21e-08 AGG TGGGGTTTGAACCCACGACGG TCGCGTTGCT chrVIII:466781-467293 - 45 2.43e-08 ATGCCACCTG CCAGAATTGAACTAGCGACCT TTGCATTACA chrII:266178-266694 - 35 3.53e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrXIV:104610-105162 - 12 3.53e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrIX:324148-324567 + 5 3.53e-08 CGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrXV:571717-572363 - 10 3.53e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGAC chrXII:426894-427452 - 51 3.53e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrIX:336124-336598 + 47 3.53e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrIV:568681-569350 - 41 3.53e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrX:541339-541439 - 5 3.53e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCAC chrXI:513145-513607 + 15 3.53e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrX:233699-233799 - 77 3.86e-08 CGC CAGGACTCGAACCTGGAATCT CCTGGTTCGT chrXI:302698-303298 - 46 5.49e-08 ATGAAACGGA CAGGAATTGAACCTGCAACCC TTCGATTGCA chrX:415739-415839 + 8 5.49e-08 AAACGGA CAGGAATTGAACCTGCAACCC TTCGATTGCA chrIV:946179-946633 - 15 6.51e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrVI:210431-210889 + 18 6.51e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXIII:837727-838223 - 62 6.51e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrVI:167269-167726 - 49 6.51e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrVI:157699-158232 + 10 7.69e-08 TGCGAATTC TGTGGATCGAACACAGGACCT CCAGATAACT chrXVI:560020-560486 + 4 7.69e-08 TTC TGTGGATCGAACACAGGACCT CCAGATAACT chrVIII:358270-358780 + 12 7.69e-08 ATGCGAATTC TGTGGATCGAACACAGGACCT CCAGATAACT chrX:390793-390893 + 42 9.04e-08 ATGCTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrXIV:632431-632895 - 30 1.15e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrIII:127528-128087 - 3 1.15e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCT TG chrVII:730959-731472 - 16 1.15e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXII:975775-976234 + 38 1.15e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXVI:744003-744680 - 35 1.93e-07 TTGCCACCTG TCAGAATTGAACTAACGACCT TTGCATTACA chrII:642835-643265 + 16 3.14e-07 AAGCTCGCAC TCAGGATCGAACTAAGGACCA ACAGATTTGC chrII:226879-227374 - 51 4.06e-07 ACGACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrXIII:258896-259430 + 54 4.06e-07 ACGACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrVII:110440-110907 + 11 5.52e-07 TTGCCATCTC CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrV:207131-207698 - 35 5.52e-07 ATGCCATCTC CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrII:9388-9907 - 40 6.21e-07 CTGAAGGATG CGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrII:347407-347907 - 50 6.21e-07 CTGAAGGATG CGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrXII:784137-784777 - 17 9.69e-07 GCGTCACAGA CAGGATTCGAACCTGCGCAGG TAAAACCCAA chrVI:191319-191802 + 12 9.69e-07 GCGTCACAGA CAGGATTCGAACCTGCGCAGG TAAAACCCAA chrV:288218-288735 + 26 1.13e-06 ACGACACCAG CAGGATTTGAACCAGCGCGGG CAGAGCCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVSGACCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123346-123779 5.2e-13 73_[+1]_6 chrIV:1256807-1257258 4.1e-12 34_[+1]_45 chrIV:83356-83843 1.8e-11 39_[-1]_40 chrVII:930750-931211 1.8e-11 31_[+1]_48 chrVI:180694-181235 1.8e-11 68_[+1]_11 chrXV:281709-282686 1.8e-11 57_[-1]_22 chrVI:162057-162466 1.8e-11 57_[-1]_22 chrVII:794164-794723 5.5e-11 66_[-1]_13 chrVII:774154-774620 5.5e-11 54_[-1]_25 chrXV:854024-854421 5.5e-11 23_[+1]_56 chrXI:517750-518323 5.5e-11 44_[-1]_35 chrXII:656683-657192 5.5e-11 55_[+1]_24 chrX:197121-197221 5.5e-11 [+1]_79 chrVIII:475485-475887 5.5e-11 78_[+1]_1 chrXVI:856489-857454 5.5e-11 23_[-1]_56 chrVI:204771-205182 5.5e-11 6_[+1]_73 chrXII:214614-215155 5.5e-11 57_[+1]_22 chrI:166057-166605 5.5e-11 28_[-1]_51 chrXV:594014-594673 1.3e-10 69_[+1]_10 chrVII:779419-779940 3.8e-10 28_[-1]_51 chrII:197251-197851 7.8e-10 36_[-1]_43 chrIV:667764-668219 7.8e-10 74_[+1]_5 chrV:551095-551562 7.8e-10 15_[+1]_64 chrXIV:569641-570153 7.8e-10 28_[+1]_51 chrXI:307893-308449 9e-10 31_[+1]_48 chrV:438518-439016 9e-10 26_[-1]_53 chrXIII:586400-586904 9e-10 42_[+1]_37 chrV:469269-469711 9e-10 60_[-1]_19 chrXI:379443-379971 9e-10 66_[-1]_13 chrX:414746-414846 1.2e-09 35_[-1]_44 chrVII:876054-876860 1.2e-09 29_[-1]_50 chrV:135196-135682 1.2e-09 44_[+1]_35 chrIX:299979-300498 1.2e-09 48_[+1]_31 chrVIII:388685-389199 1.3e-09 9_[+1]_70 chrXII:92379-92837 1.3e-09 62_[-1]_17 chrXIV:567902-568559 1.3e-09 7_[-1]_72 chrIII:168099-168609 1.5e-09 5_[+1]_74 chrV:130713-131416 1.5e-09 76_[+1]_3 chrII:350626-351138 1.5e-09 36_[-1]_43 chrXII:448424-448916 1.5e-09 38_[+1]_41 chrII:326601-327088 1.7e-09 6_[+1]_73 chrIV:488478-489182 1.7e-09 25_[+1]_54 chrII:644977-645402 1.7e-09 69_[-1]_10 chrV:487032-487597 1.7e-09 75_[+1]_4 chrVII:541617-542144 1.7e-09 61_[-1]_18 chrX:538385-538485 2.8e-09 71_[-1]_8 chrXVI:768931-769478 9.8e-09 61_[+1]_18 chrXI:578763-579381 9.8e-09 8_[-1]_71 chrXIII:131588-132078 2e-08 50_[+1]_29 chrX:374181-374281 2e-08 35_[+1]_44 chrIV:884171-884703 2.2e-08 76_[-1]_3 chrVIII:466781-467293 2.4e-08 44_[-1]_35 chrII:266178-266694 3.5e-08 34_[-1]_45 chrXIV:104610-105162 3.5e-08 11_[-1]_68 chrIX:324148-324567 3.5e-08 4_[+1]_75 chrXV:571717-572363 3.5e-08 9_[-1]_70 chrXII:426894-427452 3.5e-08 50_[-1]_29 chrIX:336124-336598 3.5e-08 46_[+1]_33 chrIV:568681-569350 3.5e-08 40_[-1]_39 chrX:541339-541439 3.5e-08 4_[-1]_75 chrXI:513145-513607 3.5e-08 14_[+1]_65 chrX:233699-233799 3.9e-08 76_[-1]_3 chrXI:302698-303298 5.5e-08 45_[-1]_34 chrX:415739-415839 5.5e-08 7_[+1]_72 chrIV:946179-946633 6.5e-08 14_[-1]_65 chrVI:210431-210889 6.5e-08 17_[+1]_62 chrXIII:837727-838223 6.5e-08 61_[-1]_18 chrVI:167269-167726 6.5e-08 48_[-1]_31 chrVI:157699-158232 7.7e-08 9_[+1]_70 chrXVI:560020-560486 7.7e-08 3_[+1]_76 chrVIII:358270-358780 7.7e-08 11_[+1]_68 chrX:390793-390893 9e-08 41_[+1]_38 chrXIV:632431-632895 1.1e-07 29_[-1]_50 chrIII:127528-128087 1.1e-07 2_[-1]_77 chrVII:730959-731472 1.1e-07 15_[-1]_64 chrXII:975775-976234 1.1e-07 37_[+1]_42 chrXVI:744003-744680 1.9e-07 34_[-1]_45 chrII:642835-643265 3.1e-07 15_[+1]_64 chrII:226879-227374 4.1e-07 50_[-1]_29 chrXIII:258896-259430 4.1e-07 53_[+1]_26 chrVII:110440-110907 5.5e-07 10_[+1]_69 chrV:207131-207698 5.5e-07 34_[-1]_45 chrII:9388-9907 6.2e-07 39_[-1]_40 chrII:347407-347907 6.2e-07 49_[-1]_30 chrXII:784137-784777 9.7e-07 16_[-1]_63 chrVI:191319-191802 9.7e-07 11_[+1]_68 chrV:288218-288735 1.1e-06 25_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVSGACCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSGGRATCGAACCSVSGACCT width=21 seqs=87 chrIII:123346-123779 ( 74) CGGGACTCGAACCCGGGACCT 1 chrIV:1256807-1257258 ( 35) CGGGAATCGAACCCGGGCCCC 1 chrIV:83356-83843 ( 40) CCGGAATCGAACCGGGGGCCC 1 chrVII:930750-931211 ( 32) CCGGAATCGAACCGGGGGCCC 1 chrVI:180694-181235 ( 69) CCGGAATCGAACCGGGGGCCC 1 chrXV:281709-282686 ( 58) CCGGAATCGAACCGGGGGCCC 1 chrVI:162057-162466 ( 58) CCGGAATCGAACCGGGGGCCC 1 chrVII:794164-794723 ( 67) CCGGAATCGAACCGATGACCT 1 chrVII:774154-774620 ( 55) CCGGAATCGAACCGGAGACCT 1 chrXV:854024-854421 ( 24) CCGGAATCGAACCGATGACCT 1 chrXI:517750-518323 ( 45) CCGGAATCGAACCGGAGACCT 1 chrXII:656683-657192 ( 56) CCGGAATCGAACCGGAGACCT 1 chrX:197121-197221 ( 1) CCGGAATCGAACCGGAGACCT 1 chrVIII:475485-475887 ( 79) CGAGGATCGAACTCGGGACCT 1 chrXVI:856489-857454 ( 24) CCGGAATCGAACCGGAGACCT 1 chrVI:204771-205182 ( 7) CCGGAATCGAACCGGAGACCT 1 chrXII:214614-215155 ( 58) CCGGAATCGAACCGATGACCT 1 chrI:166057-166605 ( 29) CCGGAATCGAACCGATGACCT 1 chrXV:594014-594673 ( 70) CGGGAATCGAACCCGGGCCTC 1 chrVII:779419-779940 ( 29) CGAGAATCGAACCCGTGTCCC 1 chrII:197251-197851 ( 37) GCGGGATCGAACCGCTGATCC 1 chrIV:667764-668219 ( 75) GCGGGATCGAACCGCTGATCC 1 chrV:551095-551562 ( 16) GCGGGATCGAACCGCTGATCC 1 chrXIV:569641-570153 ( 29) GCGGGATCGAACCGCTGATCC 1 chrXI:307893-308449 ( 32) CCAGGATCGAACTGGGGACGT 1 chrV:438518-439016 ( 27) CCAGGATCGAACTGGGGACGT 1 chrXIII:586400-586904 ( 43) CCAGGATCGAACTGGGGACGT 1 chrV:469269-469711 ( 61) CCAGGATCGAACTGGGGACGT 1 chrXI:379443-379971 ( 67) CCAGGATCGAACTGGGGACGT 1 chrX:414746-414846 ( 36) GGGGGCTCGAACCCCTAACCT 1 chrVII:876054-876860 ( 30) GGGGGCTCGAACCCCTAACCT 1 chrV:135196-135682 ( 45) GGGGGCTCGAACCCCTAACCT 1 chrIX:299979-300498 ( 49) GGGGGCTCGAACCCCTAACCT 1 chrVIII:388685-389199 ( 10) TGGGAATTGAACCCAGGGCCT 1 chrXII:92379-92837 ( 63) TGGGAATTGAACCCAGGGCCT 1 chrXIV:567902-568559 ( 8) TGGGAATTGAACCCAGGGCCT 1 chrIII:168099-168609 ( 6) CCGGATTCGAACCGGGGTTGT 1 chrV:130713-131416 ( 77) CCGGATTCGAACCGGGGTTGT 1 chrII:350626-351138 ( 37) CCGGATTCGAACCGGGGTTGT 1 chrXII:448424-448916 ( 39) CCGGATTCGAACCGGGGTTGT 1 chrII:326601-327088 ( 7) CGAGGTTCGAACTCGGGATCT 1 chrIV:488478-489182 ( 26) CGAGGTTCGAACTCGGGATCT 1 chrII:644977-645402 ( 70) GGGGAGTCGAACCCCGGTCTC 1 chrV:487032-487597 ( 76) GGGGAGTCGAACCCCGGTCTC 1 chrVII:541617-542144 ( 62) GGGGAGTCGAACCCCGGTCTC 1 chrX:538385-538485 ( 72) CGGGACTCGAACCCGCAGTCT 1 chrXVI:768931-769478 ( 62) GGGGGCTCGAACCCCTGACAT 1 chrXI:578763-579381 ( 9) GGGGGCTCGAACCCCTGACAT 1 chrXIII:131588-132078 ( 51) TGGGGGTCGAACCCATAATCT 1 chrX:374181-374281 ( 36) TGGGGGTCGAACCCATAATCT 1 chrIV:884171-884703 ( 77) TGGGGTTTGAACCCACGACGG 1 chrVIII:466781-467293 ( 45) CCAGAATTGAACTAGCGACCT 1 chrII:266178-266694 ( 35) TCGGATTTGAACCGATGATCT 1 chrXIV:104610-105162 ( 12) TCGGATTTGAACCGATGATCT 1 chrIX:324148-324567 ( 5) GGGGAATTGAACCCCGATCTG 1 chrXV:571717-572363 ( 10) GGGGAATTGAACCCCGATCTG 1 chrXII:426894-427452 ( 51) GGGGAATTGAACCCCGATCTG 1 chrIX:336124-336598 ( 47) GGGGAATTGAACCCCGATCTG 1 chrIV:568681-569350 ( 41) GGGGAATTGAACCCCGATCTG 1 chrX:541339-541439 ( 5) GGGGAATTGAACCCCGATCTG 1 chrXI:513145-513607 ( 15) GGGGAATTGAACCCCGATCTG 1 chrX:233699-233799 ( 77) CAGGACTCGAACCTGGAATCT 1 chrXI:302698-303298 ( 46) CAGGAATTGAACCTGCAACCC 1 chrX:415739-415839 ( 8) CAGGAATTGAACCTGCAACCC 1 chrIV:946179-946633 ( 15) GGCGAGTCGAACGCCCGATCT 1 chrVI:210431-210889 ( 18) GGCGAGTCGAACGCCCGATCT 1 chrXIII:837727-838223 ( 62) GGCGAGTCGAACGCCCGATCT 1 chrVI:167269-167726 ( 49) GGCGAGTCGAACGCCCGATCT 1 chrVI:157699-158232 ( 10) TGTGGATCGAACACAGGACCT 1 chrXVI:560020-560486 ( 4) TGTGGATCGAACACAGGACCT 1 chrVIII:358270-358780 ( 12) TGTGGATCGAACACAGGACCT 1 chrX:390793-390893 ( 42) GGAGGTTCGAACTCTCGACCT 1 chrXIV:632431-632895 ( 30) TGAGGGTTGAACTCACGATCT 1 chrIII:127528-128087 ( 3) TGAGGGTTGAACTCACGATCT 1 chrVII:730959-731472 ( 16) TGAGGGTTGAACTCACGATCT 1 chrXII:975775-976234 ( 38) TGAGGGTTGAACTCACGATCT 1 chrXVI:744003-744680 ( 35) TCAGAATTGAACTAACGACCT 1 chrII:642835-643265 ( 16) TCAGGATCGAACTAAGGACCA 1 chrII:226879-227374 ( 51) CAGGACTCGAACCTGCGCGGG 1 chrXIII:258896-259430 ( 54) CAGGACTCGAACCTGCGCGGG 1 chrVII:110440-110907 ( 11) CTAGAATCGAACCAGGGTTTC 1 chrV:207131-207698 ( 35) CTAGAATCGAACCAGGGTTTC 1 chrII:9388-9907 ( 40) CGAGGTTCGAACTCGCGCGGA 1 chrII:347407-347907 ( 50) CGAGGTTCGAACTCGCGCGGA 1 chrXII:784137-784777 ( 17) CAGGATTCGAACCTGCGCAGG 1 chrVI:191319-191802 ( 12) CAGGATTCGAACCTGCGCAGG 1 chrV:288218-288735 ( 26) CAGGATTTGAACCAGCGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVSGACCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.6334 E= 1.8e-274 -1309 145 60 -67 -175 100 142 -375 -36 -204 184 -317 -1309 -1309 240 -1309 103 -1309 96 -1309 83 -58 -34 -85 -1309 -1309 -1309 169 -1309 198 -1309 -30 -1309 -1309 240 -1309 169 -1309 -1309 -1309 169 -1309 -1309 -1309 -1309 240 -1309 -1309 -317 191 -204 -59 -217 142 86 -195 -36 54 131 -475 -217 42 128 -51 -67 -1309 209 -1309 95 -87 -87 -67 -375 171 -172 -5 -375 174 4 -105 -317 20 -34 95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVSGACCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 87 E= 1.8e-274 0.000000 0.517241 0.287356 0.195402 0.091954 0.379310 0.505747 0.022989 0.241379 0.045977 0.678161 0.034483 0.000000 0.000000 1.000000 0.000000 0.632184 0.000000 0.367816 0.000000 0.551724 0.126437 0.149425 0.172414 0.000000 0.000000 0.000000 1.000000 0.000000 0.747126 0.000000 0.252874 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.034483 0.712644 0.045977 0.206897 0.068966 0.505747 0.344828 0.080460 0.241379 0.275862 0.471264 0.011494 0.068966 0.252874 0.459770 0.218391 0.195402 0.000000 0.804598 0.000000 0.597701 0.103448 0.103448 0.195402 0.022989 0.620690 0.057471 0.298851 0.022989 0.632184 0.195402 0.149425 0.034483 0.218391 0.149425 0.597701 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVSGACCT MEME-1 regular expression -------------------------------------------------------------------------------- [CG][GC][GA]G[AG]AT[CT]GAAC[CT][CG][GCA][GCT]GA[CT]C[TC] -------------------------------------------------------------------------------- Time 351.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GRDVSCYYWAMCCACTRVGCCAHRNGVSC MEME-2 width = 29 sites = 58 llr = 1016 E-value = 1.3e-160 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRDVSCYYWAMCCACTRVGCCAHRNGVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 14221111365:3a::433::a4322411 pos.-specific C 21144733114a6:9:23:a7:4131369 probability G 53345221:1::2:::447::::42623: matrix T 223:114563::::1a::::3:2231::: bits 2.4 * * 2.2 * * 1.9 * * * * 1.7 * *** * * * Relative 1.4 * *** *** * Entropy 1.2 * *** **** * (25.3 bits) 1.0 * * *** **** ** 0.7 *** ****** ***** ** 0.5 * *** ************ **** 0.2 ** ********************* **** 0.0 ----------------------------- Multilevel GATCGCTTTAACCACTAGGCCACGCGACC consensus TGGGC CCATC A GCA T AAT CG sequence AA A T G G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDVSCYYWAMCCACTRVGCCAHRNGVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrVII:774154-774620 - 12 1.50e-13 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC AATTAATTGA chrXI:517750-518323 - 2 1.50e-13 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC A chrX:197121-197221 + 36 1.50e-13 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC TAATATTATT chrVI:204771-205182 + 42 1.50e-13 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCC GAACGTTTGT chrXIV:602086-602552 - 43 6.74e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC ATTGTTATCT chrV:551095-551562 + 52 6.74e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC TGTAATCTGT chrXIV:569641-570153 + 65 6.74e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC ACTGTTA chrXII:1051897-1052371 + 32 6.74e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC ATGAAAAGGA chrXII:734606-735001 - 49 6.74e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC AAACTTTGTT chrX:617710-617810 - 4 2.01e-11 ACCTAAATCT GACGCCTTAAACCACTCGGCCAAACTCCC ATT chrVII:794164-794723 - 24 2.74e-11 CTTGCAAGGG AAGCGCGCTACCAACTGCGCCATGTGCCC GCAATCTATG chrXV:854024-854421 + 59 2.74e-11 CTTGCAAGGG AAGCGCGCTACCAACTGCGCCATGTGCCC TGATGACTGT chrV:288218-288735 + 70 3.72e-11 ATTTCAAGTC TGTCGCCTTAACCACTCGGCCATAGTGCC TA chrXII:167766-168245 + 42 6.69e-11 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCC ATATGACTAT chrVIII:132796-133421 + 21 6.69e-11 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCC ACTTATTATA chrI:182413-182753 + 42 6.69e-11 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCC AAAATTGTAT chrX:523864-523964 + 27 6.69e-11 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCC TTTAATCTCT chrXII:605145-605627 + 68 1.54e-10 GCTATAAGCA CGAAGCTCTAACCACTGAGCTACACGAGC ATTT chrXI:307893-308449 + 68 7.02e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC ACTT chrVII:823272-823699 - 47 7.02e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC ACTCTTATTG chrV:469269-469711 - 17 7.02e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC AATTATTTCT chrXI:379443-379971 - 23 7.02e-10 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC TATTAATCTG chrXV:113469-114140 - 48 1.57e-09 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGC TAAATCTCTG chrII:326601-327088 + 43 3.32e-09 GTGTAAAGGC GACGTCTTGAACCACTGGACCATTGGACC CGGAACTCGA chrIV:488478-489182 + 62 3.32e-09 GTGTAAAGGC GACGTCTTGAACCACTGGACCATTGGACC GGAAACCCAT chrVII:700084-701243 - 62 4.08e-09 ACCTCGACCT GACGCCTTAGACCACTCGGCCAGAGTACC AATTCATCTG chrVII:930750-931211 + 65 4.99e-09 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TTACTGA chrXIII:183761-184208 + 6 4.99e-09 GCAAC GTTGGATTTTACCACTAAACCACTTGCGC GATCTTTATT chrXV:281709-282686 - 17 4.99e-09 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC GCTTTCATGT chrVI:162057-162466 - 17 4.99e-09 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrVI:157699-158232 + 64 5.52e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TTCTATTT chrXVI:622362-622848 + 48 5.52e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC ATATCAGAAT chrXVI:560020-560486 + 58 5.52e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TCAATTTCTA chrVIII:358270-358780 + 66 5.52e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTA chrX:424306-424406 + 9 9.84e-09 TTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrXI:83951-84425 - 70 9.84e-09 CT GCCGCCTTAGACCACTCGGCCAACCCTCC ATACAAATTT chrII:642835-643265 + 50 1.42e-08 GATTTGCAAT CTGCTGCGCTACCACTGCGCCATACGAGC TTTCTATTAC chrVI:101190-101629 - 17 1.42e-08 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCC GAATTATTGT chrXVI:775608-776065 + 22 1.42e-08 GATTTGCAAT CTGCTGCGCTACCACTGCGCCATACGAGC TTTTGAATTA chrIV:802575-803008 + 33 4.70e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC GACAATTCAT chrIII:168099-168609 + 40 4.70e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC AGGACTTCTT chrVIII:133951-134703 - 44 4.70e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC GGAACTTACT chrXVI:74650-76682 - 34 4.70e-08 GGGGCCACAG TCAAGCAAATCCAACTCCGCCACAAGACC GAGTGCTATT chrVII:115241-115769 - 33 5.10e-08 CTTAAAAGCC GAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrVII:1004036-1004410 - 43 5.52e-08 CATTACAAGT GCAACGCTCTACCACTAAGCTAAGGAGGC AAACCCTTGA chrVIII:466781-467293 - 3 5.52e-08 CATTACAAGT GCAACGCTCTACCACTAAGCTAAGGAGGC TA chrIV:1175609-1176065 - 42 6.45e-08 ATTATGAGAC TGACGCTCTTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrX:538385-538485 - 30 6.97e-08 CCTTAGGAGG GAGACGCGTTACCATTACGCCAACGGAAC CAACTTGGTT chrXVI:810459-810899 - 47 7.53e-08 TTAACAGTCG CACGCCTTAACCAACTTGGCCATGGAGTC GCAAATAATG chrX:374181-374281 + 70 7.53e-08 GATTAGAAGT CAGACGCGTTGCCATTACGCCACGCGAGC TA chrXVI:731604-732246 - 8 1.27e-07 CTAGCAAAGG TAGCCCACTTACCACTCAGCTATGCGAAA GTTTCAT chrXIV:96031-96602 + 18 1.46e-07 CTTGGAAGGG TGGGATGATAACCACTACACTAACCGCCC ATGTGTTGGA chrV:492142-492708 + 21 2.07e-07 GTTCGTAGCC AGACGCCGTGACCATTGGGCCACGAGGAA TAGGATGTTC chrX:233699-233799 - 34 2.07e-07 GTTCGTAGCC AGACGCCGTGACCATTGGGCCACGAGGAA CAAGAATATA chrXII:489315-489555 - 34 5.40e-07 CTGAGTTTCG CGTATGGTCACCCACTACACTACTCGGTC AGGCTCTTAC chrIV:1256807-1257258 + 69 6.08e-07 CTTGGGAAGC ATGAATTCTAACCACTGAACCACTTTCGC TAA chrXV:988911-989587 + 47 7.67e-07 AAGCGACAGG CACACGCGAACCGGCTAGGCCACCCAAAC GTCATAGCTA chrX:517662-517762 + 41 8.60e-07 GGTTATGAGC CCTGCGCGCTTCCACTGCGCCACGGCGCT TAACTTTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDVSCYYWAMCCACTRVGCCAHRNGVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:774154-774620 1.5e-13 11_[-2]_60 chrXI:517750-518323 1.5e-13 1_[-2]_70 chrX:197121-197221 1.5e-13 35_[+2]_36 chrVI:204771-205182 1.5e-13 41_[+2]_30 chrXIV:602086-602552 6.7e-13 42_[-2]_29 chrV:551095-551562 6.7e-13 51_[+2]_20 chrXIV:569641-570153 6.7e-13 64_[+2]_7 chrXII:1051897-1052371 6.7e-13 31_[+2]_40 chrXII:734606-735001 6.7e-13 48_[-2]_23 chrX:617710-617810 2e-11 3_[-2]_68 chrVII:794164-794723 2.7e-11 23_[-2]_48 chrXV:854024-854421 2.7e-11 58_[+2]_13 chrV:288218-288735 3.7e-11 69_[+2]_2 chrXII:167766-168245 6.7e-11 41_[+2]_30 chrVIII:132796-133421 6.7e-11 20_[+2]_51 chrI:182413-182753 6.7e-11 41_[+2]_30 chrX:523864-523964 6.7e-11 26_[+2]_45 chrXII:605145-605627 1.5e-10 67_[+2]_4 chrXI:307893-308449 7e-10 67_[+2]_4 chrVII:823272-823699 7e-10 46_[-2]_25 chrV:469269-469711 7e-10 16_[-2]_55 chrXI:379443-379971 7e-10 22_[-2]_49 chrXV:113469-114140 1.6e-09 47_[-2]_24 chrII:326601-327088 3.3e-09 42_[+2]_29 chrIV:488478-489182 3.3e-09 61_[+2]_10 chrVII:700084-701243 4.1e-09 61_[-2]_10 chrVII:930750-931211 5e-09 64_[+2]_7 chrXIII:183761-184208 5e-09 5_[+2]_66 chrXV:281709-282686 5e-09 16_[-2]_55 chrVI:162057-162466 5e-09 16_[-2]_55 chrVI:157699-158232 5.5e-09 63_[+2]_8 chrXVI:622362-622848 5.5e-09 47_[+2]_24 chrXVI:560020-560486 5.5e-09 57_[+2]_14 chrVIII:358270-358780 5.5e-09 65_[+2]_6 chrX:424306-424406 9.8e-09 8_[+2]_63 chrXI:83951-84425 9.8e-09 69_[-2]_2 chrII:642835-643265 1.4e-08 49_[+2]_22 chrVI:101190-101629 1.4e-08 16_[-2]_55 chrXVI:775608-776065 1.4e-08 21_[+2]_50 chrIV:802575-803008 4.7e-08 32_[+2]_39 chrIII:168099-168609 4.7e-08 39_[+2]_32 chrVIII:133951-134703 4.7e-08 43_[-2]_28 chrXVI:74650-76682 4.7e-08 33_[-2]_38 chrVII:115241-115769 5.1e-08 32_[-2]_39 chrVII:1004036-1004410 5.5e-08 42_[-2]_29 chrVIII:466781-467293 5.5e-08 2_[-2]_69 chrIV:1175609-1176065 6.5e-08 41_[-2]_30 chrX:538385-538485 7e-08 29_[-2]_42 chrXVI:810459-810899 7.5e-08 46_[-2]_25 chrX:374181-374281 7.5e-08 69_[+2]_2 chrXVI:731604-732246 1.3e-07 7_[-2]_64 chrXIV:96031-96602 1.5e-07 17_[+2]_54 chrV:492142-492708 2.1e-07 20_[+2]_51 chrX:233699-233799 2.1e-07 33_[-2]_38 chrXII:489315-489555 5.4e-07 33_[-2]_38 chrIV:1256807-1257258 6.1e-07 68_[+2]_3 chrXV:988911-989587 7.7e-07 46_[+2]_25 chrX:517662-517762 8.6e-07 40_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDVSCYYWAMCCACTRVGCCAHRNGVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRDVSCYYWAMCCACTRVGCCAHRNGVSC width=29 seqs=58 chrVII:774154-774620 ( 12) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrXI:517750-518323 ( 2) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrX:197121-197221 ( 36) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrVI:204771-205182 ( 42) GAGCGCGCTACCGACTACGCCACACGCCC 1 chrXIV:602086-602552 ( 43) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrV:551095-551562 ( 52) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXIV:569641-570153 ( 65) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:1051897-1052371 ( 32) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:734606-735001 ( 49) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrX:617710-617810 ( 4) GACGCCTTAAACCACTCGGCCAAACTCCC 1 chrVII:794164-794723 ( 24) AAGCGCGCTACCAACTGCGCCATGTGCCC 1 chrXV:854024-854421 ( 59) AAGCGCGCTACCAACTGCGCCATGTGCCC 1 chrV:288218-288735 ( 70) TGTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXII:167766-168245 ( 42) TTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrVIII:132796-133421 ( 21) TTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrI:182413-182753 ( 42) TTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrX:523864-523964 ( 27) TTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:605145-605627 ( 68) CGAAGCTCTAACCACTGAGCTACACGAGC 1 chrXI:307893-308449 ( 68) GATGCCATAACCGACTAGACCACGAAACC 1 chrVII:823272-823699 ( 47) GATGCCATAACCGACTAGACCACGAAACC 1 chrV:469269-469711 ( 17) GATGCCATAACCGACTAGACCACGAAACC 1 chrXI:379443-379971 ( 23) GATGCCATAACCGACTAGACCACGAAACC 1 chrXV:113469-114140 ( 48) TGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrII:326601-327088 ( 43) GACGTCTTGAACCACTGGACCATTGGACC 1 chrIV:488478-489182 ( 62) GACGTCTTGAACCACTGGACCATTGGACC 1 chrVII:700084-701243 ( 62) GACGCCTTAGACCACTCGGCCAGAGTACC 1 chrVII:930750-931211 ( 65) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:183761-184208 ( 6) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrXV:281709-282686 ( 17) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:162057-162466 ( 17) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:157699-158232 ( 64) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrXVI:622362-622848 ( 48) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrXVI:560020-560486 ( 58) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:358270-358780 ( 66) TGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrX:424306-424406 ( 9) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXI:83951-84425 ( 70) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrII:642835-643265 ( 50) CTGCTGCGCTACCACTGCGCCATACGAGC 1 chrVI:101190-101629 ( 17) CGAGAATCATACCACTAGACCACACGCCC 1 chrXVI:775608-776065 ( 22) CTGCTGCGCTACCACTGCGCCATACGAGC 1 chrIV:802575-803008 ( 33) GAAAGTGATAACCACTACACTATAGGACC 1 chrIII:168099-168609 ( 40) GAAAGTGATAACCACTACACTATAGGACC 1 chrVIII:133951-134703 ( 44) GAAAGTGATAACCACTACACTATAGGACC 1 chrXVI:74650-76682 ( 34) TCAAGCAAATCCAACTCCGCCACAAGACC 1 chrVII:115241-115769 ( 33) GAACGCTCTACCAACTGAGCTAACAAGGA 1 chrVII:1004036-1004410 ( 43) GCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVIII:466781-467293 ( 3) GCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrIV:1175609-1176065 ( 42) TGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrX:538385-538485 ( 30) GAGACGCGTTACCATTACGCCAACGGAAC 1 chrXVI:810459-810899 ( 47) CACGCCTTAACCAACTTGGCCATGGAGTC 1 chrX:374181-374281 ( 70) CAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXVI:731604-732246 ( 8) TAGCCCACTTACCACTCAGCTATGCGAAA 1 chrXIV:96031-96602 ( 18) TGGGATGATAACCACTACACTAACCGCCC 1 chrV:492142-492708 ( 21) AGACGCCGTGACCATTGGGCCACGAGGAA 1 chrX:233699-233799 ( 34) AGACGCCGTGACCATTGGGCCACGAGGAA 1 chrXII:489315-489555 ( 34) CGTATGGTCACCCACTACACTACTCGGTC 1 chrIV:1256807-1257258 ( 69) ATGAATTCTAACCACTGAACCACTTTCGC 1 chrXV:988911-989587 ( 47) CACACGCGAACCGGCTAGGCCACCCAAAC 1 chrX:517662-517762 ( 41) CCTGCGCGCTTCCACTGCGCCACGGCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDVSCYYWAMCCACTRVGCCAHRNGVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 8.56204 E= 1.3e-160 -185 -29 145 -36 35 -87 71 -71 -59 -46 71 15 -59 106 106 -1250 -258 93 140 -185 -185 183 -29 -185 -158 54 0 47 -185 54 -46 69 -8 -87 -246 87 92 -146 -114 -26 74 124 -346 -417 -1250 240 -1250 -1250 -26 159 -29 -417 166 -1250 -346 -1250 -1250 230 -1250 -217 -1250 -1250 -1250 169 35 0 100 -317 -26 63 124 -1250 -8 -1250 190 -1250 -1250 240 -1250 -1250 -1250 197 -1250 -26 169 -1250 -1250 -1250 22 106 -346 -47 15 -87 106 -100 -47 54 35 -26 -71 -65 154 -117 47 71 24 -317 -185 159 71 -317 -217 227 -1250 -417 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDVSCYYWAMCCACTRVGCCAHRNGVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 58 E= 1.3e-160 0.086207 0.155172 0.517241 0.241379 0.396552 0.103448 0.310345 0.189655 0.206897 0.137931 0.310345 0.344828 0.206897 0.396552 0.396552 0.000000 0.051724 0.362069 0.500000 0.086207 0.086207 0.672414 0.155172 0.086207 0.103448 0.275862 0.189655 0.431034 0.086207 0.275862 0.137931 0.500000 0.293103 0.103448 0.034483 0.568966 0.586207 0.068966 0.086207 0.258621 0.517241 0.448276 0.017241 0.017241 0.000000 1.000000 0.000000 0.000000 0.258621 0.568966 0.155172 0.017241 0.982759 0.000000 0.017241 0.000000 0.000000 0.931034 0.000000 0.068966 0.000000 0.000000 0.000000 1.000000 0.396552 0.189655 0.379310 0.034483 0.258621 0.293103 0.448276 0.000000 0.293103 0.000000 0.706897 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.741379 0.000000 0.258621 1.000000 0.000000 0.000000 0.000000 0.362069 0.396552 0.017241 0.224138 0.344828 0.103448 0.396552 0.155172 0.224138 0.275862 0.241379 0.258621 0.189655 0.120690 0.551724 0.137931 0.431034 0.310345 0.224138 0.034483 0.086207 0.568966 0.310345 0.034483 0.068966 0.913793 0.000000 0.017241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDVSCYYWAMCCACTRVGCCAHRNGVSC MEME-2 regular expression -------------------------------------------------------------------------------- [GT][AG][TGA][CGA][GC]C[TC][TC][TA][AT][AC]C[CA]ACT[AG][GCA][GA]C[CT]A[CAT][GA][CTGA]G[ACG][CG]C -------------------------------------------------------------------------------- Time 670.06 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTKYTTHYTTTTTTTTTNYY MEME-3 width = 21 sites = 97 llr = 1024 E-value = 4.2e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTKYTTHYTTTTTTTTTNYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:111:2311:1:1:21:3:: pos.-specific C :2213::44:21:31123233 probability G 1:131::::1::::::1121: matrix T 78656a845889a69776367 bits 2.4 2.2 1.9 1.7 Relative 1.4 * * Entropy 1.2 * * (15.2 bits) 1.0 * * *** * * 0.7 ** ** ******** * * 0.5 *** ************** ** 0.2 ****************** ** 0.0 --------------------- Multilevel TTTTTTTTTTTTTTTTTTTTT consensus CGC CC C A CACC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYTTHYTTTTTTTTTNYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrVI:75418-76354 + 69 2.88e-10 TGCTTTCTGC TTTTTTTCTTTTTTTTTTTTT TTAGTCGTGG chrX:58644-58744 - 80 2.50e-09 . TTTTTTTTTTTTTTTTTTTTC ACGCTCTTGA chrII:415562-415917 + 76 3.24e-09 AAGTTTTTCC TTTTTTTTTTTTTTTTTCTTT TTCA chrIII:127528-128087 + 43 3.24e-09 TTAATTTTTC TTTTCTTTTTTTTTTTTTATC TCCGACGGAG chrXVI:282042-283300 + 22 1.27e-08 TGTTTTGGGA TTTTATTCCTTTTTTTTTTTT AGTGTACGTC chrV:122103-123362 - 47 5.57e-08 CTCTTAGTTA TCCTCTTTTTTTTTTTTTTTT CAATTACTGA chrVII:930750-931211 - 3 6.56e-08 GGGCTTGCGC ATTTTTTTCTTTTCTTTTTTC CC chrIV:765287-765537 - 48 9.00e-08 GCACCCAAAT TTTTCTTCTTTCTTTTTCGCT CGTATTCTCT chrVIII:214150-214354 + 53 1.05e-07 ACCATGAATA GCTTTTTTTTTTTTTTTTATT CGAAATCTGG chrXI:426180-429136 - 20 1.22e-07 GGACTCTGGA TTGGCTTTTTTTTCTTTTGCT ATCTTTGTTG chrXIII:279371-280431 + 42 1.22e-07 TCTTTGTCCT TTTTTTACCTTTTTTTTGATT TTTTTTTCAC chrVII:95026-96712 - 14 1.41e-07 AGGCATTCTC TTTTTTTATTTTTATTTTGTT TGTTCTCGAG chrX:646814-646914 + 65 1.63e-07 CAAGTCAAAT TTGTCTTTCTTTTCTTTCATT TTTTAGTCTG chrXII:875205-875786 + 26 1.88e-07 CCTATGAGGA GTTCTTTACTTTTTTTTTATC AACTTCCTTT chrXV:594014-594673 - 4 1.88e-07 ATTCAGACGT TTTGTTATTTTTTTTTCCATT TCA chrIII:107066-107841 - 50 2.17e-07 GTATACTTAT TTTGCTTATTTTTCTTATACT CAGGAAACGT chrVII:609285-610118 - 71 2.49e-07 AGGCCCTTT TTTAGTTCCTTTTTTTTTTCT CCCTCGGTCT chrXIV:102491-103157 + 12 4.27e-07 CCTCACTGGG GTCGTTTATTTTTTTTGTATT TGTGCTTATT chrII:504452-504720 + 8 4.27e-07 ATTTGTG ATTGTTTATTTTTCTTTTGGT TTAGCTCAGT chrII:477157-477796 + 75 4.27e-07 TATTTCTGGC TTTTCCTATTTTTTTTTTTCC ATTTT chrX:120265-120365 + 22 4.88e-07 CAAATCATAA TCTTTTTCTATTTCTTTTCCC TTATAAAAGG chrIV:1344819-1345776 - 73 4.88e-07 TTTTTCA ATTTTTTCTTTTTATTTTTTT CCAGTTTTTT chrXI:302698-303298 + 67 5.55e-07 TCAATTCCTG TCCGTTTCATTTTCTTTTTTT GCCATACATT chrXII:975775-976234 - 12 6.31e-07 CCTCACTGGG GTCGTTTATTTTTTTTGCATT AAATTATTTA chrXIV:106904-107692 - 51 7.16e-07 GACATTTCGC GTTTTTTCCTGTTTTTTTTTT TTTTCGCGGT chrXVI:879958-880548 - 71 7.16e-07 AGAGACCAT TTCTTTTCTCTTTCTTTTTCT CGAAAGAGAC chrIV:83356-83843 + 72 8.10e-07 CTTGCGCAAG TTTAATTTTTTTTCTTTTTCC ACATTGTT chrXIII:352109-352695 + 25 8.10e-07 CGCATTAATT TTTTTTTACTTTTCATTCGTT TTCCTCTTTT chrXI:430010-431402 + 59 8.10e-07 TATACCTTAT ATTATTTCCTCTTTTTTTTTC TGCATGTAGC chrXIII:851835-852870 - 1 8.10e-07 AATTCAAGCA GCTTTTTTTTTTTCTTTTCGT chrXI:578763-579381 - 72 9.14e-07 ATTGAAAC TTATTTTCATTTTTTTTCTTT AGCATTGAAC chrV:100698-102765 + 9 1.03e-06 TTTCTATT TTCTTTTTCTTTTCATTTTTC CTTTTTCTCA chrXVI:172896-174138 + 75 1.03e-06 ATATGACTTC TTTGCTAACATTTTTTTCATT TTTGA chrVII:986846-987829 + 70 1.03e-06 TGCCCCTTTC GTTTTTTATTTTTTTTTGGGT GAACGGAATA chrVIII:491899-493962 - 58 1.16e-06 ATCAGCATTA TTTTTTTCATTTTTGTTTATT GTAATATACC chrXIII:807691-808552 + 73 1.64e-06 TGTATAGAGG TTGGTTTCTTTTTCTTACCTT TCTCTTT chrVII:875065-875465 + 9 1.64e-06 ACAACGCT TTTTTTTCTTTATTTACTTCC TAGCGCGTAT chrXIII:510888-512122 + 76 1.83e-06 CATGGCCGCA TTTGCTGCTGTTTCTTTCGTC CTAG chrV:225178-225725 + 18 2.05e-06 AAAGAAAAAA ATTTTTATTTTTTTTTCCATC GGTCTCCCCC chrVIII:147533-148762 - 24 2.05e-06 GACTTTCGTT TTCGTTTCTATTTATTTCATT ACAGGTTTTA chrXIII:131588-132078 - 20 2.05e-06 TCGTGAGTGC TTTGTTTCTTCTTTTTTGAAT ATGCTAATTC chrXII:366050-366573 + 77 2.55e-06 AAGAGATTTA TTTCGTTTTTTTTTTATCATC GAG chrXIII:158469-158821 + 80 2.84e-06 TTTCATTCCT TTCCTTTCTTGTTCTTTTACT chrXII:214614-215155 - 25 2.84e-06 GCGTCCATTT ATTTTTTACTTTTATTCTCCT TTATTTTTAA chrII:237670-238608 - 6 2.84e-06 TGTTTGAACG TTCTTTTTTTCATTTTCTGCT GAAAG chrXIV:288785-290978 - 68 3.16e-06 TTCACCCTCT TCCTCTTCCTCTTTTCCTACT TTGTCATCTT chrXII:1028807-1030405 - 20 3.16e-06 TGGGAACAAG TTAGCTTCCTTCTTTTCCTTC TTGGTCAATT chrII:544514-544969 - 61 3.16e-06 TATTTCCATC TTTATTTCCGCTTTTATTTCC GCAGCACCGG chrVIII:396577-397213 - 3 3.16e-06 AAAAGACAAG GTTTCTTCCGTATTTTTTCTC TT chrIII:78272-79329 + 42 3.51e-06 GTAATGTTGA GTTCTTGATTTTTTTTTTGTT TCTGTCCTTG chrVII:156180-157615 + 66 3.51e-06 ACACTTTACT TCCTGTATCTTTTTTTTTATC AACTCGCTTG chrVII:914603-915248 - 51 4.32e-06 AATTCACTCG ATGCCTTTTTTTTTTTTTCTC GAATAGATAG chrVIII:447807-448503 - 56 4.78e-06 TTAGTTCCTT TTTGTTTACATTTTCATTACT TATTTTGGCG chrII:625045-625592 - 35 5.29e-06 CACTTTAGAA TTTACTTACTCTTTTACCCTC TCTGTCTCTC chrXV:903642-905752 - 76 6.44e-06 TTTT TTTTCTTAATTTTATATTTCT CTTGTTTAAC chrII:88912-89520 + 52 7.82e-06 TGAAATATGC TTTGGTTTCTTTTCATCTCTT CTTGTGAAAA chrIV:1116837-1117290 + 15 8.60e-06 AGCCTTCGTG TTTGTTTACCTTTTTAGCTCT TTGAAGATCA chrVIII:74656-76945 + 55 8.60e-06 ATAATTTCCA TTAGATTCCTCTTTTTCTCGT CCATTAACCA chrX:73482-73582 - 72 8.60e-06 AATCATAA TCTTCTACCTCTTCTACCACC CTTCTTTCTG chrXVI:286066-287585 + 70 8.60e-06 TCGAGTCCAT TTTCTTTATTTTTTTAATGGT AAGAGGATGA chrIV:520728-521500 + 2 9.44e-06 G TTTTATTTTTCTTTCTTGGCT TTGAATTGCA chrV:138463-140794 - 78 9.44e-06 TA TCTGCTTCCACTTCTACTGCC AAACCAATGG chrXIV:715950-717184 + 4 1.04e-05 CTT GTCTCTTTTTCTTTTCTGCCT CGGTTTCGCG chrVII:31266-31891 + 64 1.24e-05 TTGGAGAGGG TCTACTTCTTTTTCCTGTACC GAGGCGATCA chrIV:1362015-1362787 - 1 1.36e-05 AGCCAGATTT TTCGTTTACTCATTGTTTATT chrIV:720402-722903 - 79 1.49e-05 T TTTTCTAACTATTTTTTTTGC AATTTTTTTG chrXIII:192112-192608 + 65 1.49e-05 AGCCAACTCT ATCTATATCTTTTCTTTTAGT CCTACTTTGG chrXIV:567902-568559 + 70 1.49e-05 GTGGTGTTTC ACTTATTCCTTTTCTAGTATT TTTTTTCCAC chrXVI:188497-189208 + 23 1.63e-05 TACCATTACT TACGATTTTTTTTTTTTCGTT ATGAACCCTG chrXI:463433-463906 - 17 1.63e-05 ATTTCAGTGA TGCGTTTTCTTTTTTTACACC TTTTCACGAG chrXV:832220-832881 + 54 1.77e-05 TAGCAATAGC TTCCTTTACTATTTTATTCTT AGGGAGAACT chrIV:322137-323640 - 37 1.93e-05 TCTTGGCGTC TTCTTCTTCGTTTCTCTTTCT GGAAATTCTC chrXIII:124410-124605 - 20 1.93e-05 AATGTATGGA TTTGTTATATTTTTCTTCAGT TTTTTCCTTA chrXV:472882-473537 - 32 2.11e-05 AAATTTTTTA ATGTCTTCCTTTTCTTAGTTT TTATAGCTTT chrXVI:329036-329708 + 59 2.29e-05 AGAACTATTT TTTGTTTACGTTTTTTTCTGA ATTGAACAAT chrIV:667764-668219 - 44 2.29e-05 TAGAGACCAT TTTTATTTTTTCTCCTCTATT GTTAAAAATA chrV:349639-350086 + 60 2.29e-05 AAAAATTTTC TCAGTTACTTCTTCTATCTTC CGTAGTTTCC chrIII:176717-179364 - 19 2.49e-05 GGCAGTATAT TTTGTCAACTTTTTTTTCGAT GGAAAAGCAA chrXII:406266-407580 + 13 2.49e-05 TTTATGCCTT GTATTTTTTTCTTCTAGCACT TTAACTGTTG chrVIII:372517-373471 + 4 2.49e-05 TTT GTTGCTGCTGTCTCTTTTGTT GTTCTTGCAG chrII:159829-160198 + 20 2.71e-05 CGAAAGCCCT TTTGTTTTTTTTCTGTGTGTC CGGCCGCTCA chrXIV:88229-89984 - 9 2.94e-05 ACTACGATAC TTTGCTATTGCTTCATTTTTT CTATCATA chrXII:65170-65789 - 25 3.19e-05 GTTACCCCAC TTCGTTTCTTTTTTCAGGGGC GATGCCACTT chrII:311555-311890 + 8 3.19e-05 TATACTA TTTGTTTATATATTTCCTATT TGAGTATGAT chrVI:63819-65356 + 36 3.46e-05 CGGTTAAGGT TTTGATAACTTTTTGCTTTCT GGAAGTCTGT chrIV:465137-465745 + 28 3.74e-05 TTTAAATCCG TTTTCTATTTTCTTTAGGTCT TTCCATTGTA chrIV:281694-282396 + 58 4.05e-05 ATACCATCGT ATTACTATTTTTTCTATGGTT ATATGTCGTA chrXI:313078-313628 - 75 4.73e-05 GCATT TTATTTTTTTCCTTTAGCCTT CATGGTCTGT chrIV:218275-218839 - 66 5.11e-05 GACTTTCCTG TTCTACTACACTTTTTTTTTC TTAATTTCAA chrXII:784137-784777 + 48 5.51e-05 TCTGTGACGC TTTTTTTAATTTCTTTACTCC ATGACAAAAG chrVII:771958-772327 + 1 5.94e-05 . GTTACTGACACTTTTTTTTCT AGAAAGTTCC chrXVI:192181-192812 - 42 6.40e-05 ATTATTAAAG TCATTTTCAGTTTTTCTTGTC GTCGGAAGCT chrV:207131-207698 + 64 7.40e-05 AGGAGATGGC ATATTTATTTTTTATATTCTT AATATACAAA chrXIV:720670-724029 + 66 7.40e-05 TTGTGTGGTG TTTCCTTCTTCATATACTCTT CCACGGACTT chrVII:544383-546125 + 64 7.96e-05 AGCCTAACAA TCTTTTTTTATATTTTTCCAT ATTCCTTTAT chrXV:109128-111272 + 31 7.96e-05 TTTCTACTTT ATTACTTTCGTTTTTAACCTC ATTATACTTT chrVIII:466781-467293 + 79 9.17e-05 GTGGCATTAT ACCGGTATTATTTTTTTTCCC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYTTHYTTTTTTTTTNYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVI:75418-76354 2.9e-10 68_[+3]_11 chrX:58644-58744 2.5e-09 79_[-3] chrII:415562-415917 3.2e-09 75_[+3]_4 chrIII:127528-128087 3.2e-09 42_[+3]_37 chrXVI:282042-283300 1.3e-08 21_[+3]_58 chrV:122103-123362 5.6e-08 46_[-3]_33 chrVII:930750-931211 6.6e-08 2_[-3]_77 chrIV:765287-765537 9e-08 47_[-3]_32 chrVIII:214150-214354 1e-07 52_[+3]_27 chrXI:426180-429136 1.2e-07 19_[-3]_60 chrXIII:279371-280431 1.2e-07 41_[+3]_38 chrVII:95026-96712 1.4e-07 13_[-3]_66 chrX:646814-646914 1.6e-07 64_[+3]_15 chrXII:875205-875786 1.9e-07 25_[+3]_54 chrXV:594014-594673 1.9e-07 3_[-3]_76 chrIII:107066-107841 2.2e-07 49_[-3]_30 chrVII:609285-610118 2.5e-07 70_[-3]_9 chrXIV:102491-103157 4.3e-07 11_[+3]_68 chrII:504452-504720 4.3e-07 7_[+3]_72 chrII:477157-477796 4.3e-07 74_[+3]_5 chrX:120265-120365 4.9e-07 21_[+3]_58 chrIV:1344819-1345776 4.9e-07 72_[-3]_7 chrXI:302698-303298 5.5e-07 66_[+3]_13 chrXII:975775-976234 6.3e-07 11_[-3]_68 chrXIV:106904-107692 7.2e-07 50_[-3]_29 chrXVI:879958-880548 7.2e-07 70_[-3]_9 chrIV:83356-83843 8.1e-07 71_[+3]_8 chrXIII:352109-352695 8.1e-07 24_[+3]_55 chrXI:430010-431402 8.1e-07 58_[+3]_21 chrXIII:851835-852870 8.1e-07 [-3]_79 chrXI:578763-579381 9.1e-07 71_[-3]_8 chrV:100698-102765 1e-06 8_[+3]_71 chrXVI:172896-174138 1e-06 74_[+3]_5 chrVII:986846-987829 1e-06 69_[+3]_10 chrVIII:491899-493962 1.2e-06 57_[-3]_22 chrXIII:807691-808552 1.6e-06 72_[+3]_7 chrVII:875065-875465 1.6e-06 8_[+3]_71 chrXIII:510888-512122 1.8e-06 75_[+3]_4 chrV:225178-225725 2.1e-06 17_[+3]_62 chrVIII:147533-148762 2.1e-06 23_[-3]_56 chrXIII:131588-132078 2.1e-06 19_[-3]_60 chrXII:366050-366573 2.6e-06 76_[+3]_3 chrXIII:158469-158821 2.8e-06 79_[+3] chrXII:214614-215155 2.8e-06 24_[-3]_55 chrII:237670-238608 2.8e-06 5_[-3]_74 chrXIV:288785-290978 3.2e-06 67_[-3]_12 chrXII:1028807-1030405 3.2e-06 19_[-3]_60 chrII:544514-544969 3.2e-06 60_[-3]_19 chrVIII:396577-397213 3.2e-06 2_[-3]_77 chrIII:78272-79329 3.5e-06 41_[+3]_38 chrVII:156180-157615 3.5e-06 65_[+3]_14 chrVII:914603-915248 4.3e-06 50_[-3]_29 chrVIII:447807-448503 4.8e-06 55_[-3]_24 chrII:625045-625592 5.3e-06 34_[-3]_45 chrXV:903642-905752 6.4e-06 75_[-3]_4 chrII:88912-89520 7.8e-06 51_[+3]_28 chrIV:1116837-1117290 8.6e-06 14_[+3]_65 chrVIII:74656-76945 8.6e-06 54_[+3]_25 chrX:73482-73582 8.6e-06 71_[-3]_8 chrXVI:286066-287585 8.6e-06 69_[+3]_10 chrIV:520728-521500 9.4e-06 1_[+3]_78 chrV:138463-140794 9.4e-06 77_[-3]_2 chrXIV:715950-717184 1e-05 3_[+3]_76 chrVII:31266-31891 1.2e-05 63_[+3]_16 chrIV:1362015-1362787 1.4e-05 [-3]_79 chrIV:720402-722903 1.5e-05 78_[-3]_1 chrXIII:192112-192608 1.5e-05 64_[+3]_15 chrXIV:567902-568559 1.5e-05 69_[+3]_10 chrXVI:188497-189208 1.6e-05 22_[+3]_57 chrXI:463433-463906 1.6e-05 16_[-3]_63 chrXV:832220-832881 1.8e-05 53_[+3]_26 chrIV:322137-323640 1.9e-05 36_[-3]_43 chrXIII:124410-124605 1.9e-05 19_[-3]_60 chrXV:472882-473537 2.1e-05 31_[-3]_48 chrXVI:329036-329708 2.3e-05 58_[+3]_21 chrIV:667764-668219 2.3e-05 43_[-3]_36 chrV:349639-350086 2.3e-05 59_[+3]_20 chrIII:176717-179364 2.5e-05 18_[-3]_61 chrXII:406266-407580 2.5e-05 12_[+3]_67 chrVIII:372517-373471 2.5e-05 3_[+3]_76 chrII:159829-160198 2.7e-05 19_[+3]_60 chrXIV:88229-89984 2.9e-05 8_[-3]_71 chrXII:65170-65789 3.2e-05 24_[-3]_55 chrII:311555-311890 3.2e-05 7_[+3]_72 chrVI:63819-65356 3.5e-05 35_[+3]_44 chrIV:465137-465745 3.7e-05 27_[+3]_52 chrIV:281694-282396 4.1e-05 57_[+3]_22 chrXI:313078-313628 4.7e-05 74_[-3]_5 chrIV:218275-218839 5.1e-05 65_[-3]_14 chrXII:784137-784777 5.5e-05 47_[+3]_32 chrVII:771958-772327 5.9e-05 [+3]_79 chrXVI:192181-192812 6.4e-05 41_[-3]_38 chrV:207131-207698 7.4e-05 63_[+3]_16 chrXIV:720670-724029 7.4e-05 65_[+3]_14 chrVII:544383-546125 8e-05 63_[+3]_16 chrXV:109128-111272 8e-05 30_[+3]_49 chrVIII:466781-467293 9.2e-05 78_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYTTHYTTTTTTTTTNYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTKYTTHYTTTTTTTTTNYY width=21 seqs=97 chrVI:75418-76354 ( 69) TTTTTTTCTTTTTTTTTTTTT 1 chrX:58644-58744 ( 80) TTTTTTTTTTTTTTTTTTTTC 1 chrII:415562-415917 ( 76) TTTTTTTTTTTTTTTTTCTTT 1 chrIII:127528-128087 ( 43) TTTTCTTTTTTTTTTTTTATC 1 chrXVI:282042-283300 ( 22) TTTTATTCCTTTTTTTTTTTT 1 chrV:122103-123362 ( 47) TCCTCTTTTTTTTTTTTTTTT 1 chrVII:930750-931211 ( 3) ATTTTTTTCTTTTCTTTTTTC 1 chrIV:765287-765537 ( 48) TTTTCTTCTTTCTTTTTCGCT 1 chrVIII:214150-214354 ( 53) GCTTTTTTTTTTTTTTTTATT 1 chrXI:426180-429136 ( 20) TTGGCTTTTTTTTCTTTTGCT 1 chrXIII:279371-280431 ( 42) TTTTTTACCTTTTTTTTGATT 1 chrVII:95026-96712 ( 14) TTTTTTTATTTTTATTTTGTT 1 chrX:646814-646914 ( 65) TTGTCTTTCTTTTCTTTCATT 1 chrXII:875205-875786 ( 26) GTTCTTTACTTTTTTTTTATC 1 chrXV:594014-594673 ( 4) TTTGTTATTTTTTTTTCCATT 1 chrIII:107066-107841 ( 50) TTTGCTTATTTTTCTTATACT 1 chrVII:609285-610118 ( 71) TTTAGTTCCTTTTTTTTTTCT 1 chrXIV:102491-103157 ( 12) GTCGTTTATTTTTTTTGTATT 1 chrII:504452-504720 ( 8) ATTGTTTATTTTTCTTTTGGT 1 chrII:477157-477796 ( 75) TTTTCCTATTTTTTTTTTTCC 1 chrX:120265-120365 ( 22) TCTTTTTCTATTTCTTTTCCC 1 chrIV:1344819-1345776 ( 73) ATTTTTTCTTTTTATTTTTTT 1 chrXI:302698-303298 ( 67) TCCGTTTCATTTTCTTTTTTT 1 chrXII:975775-976234 ( 12) GTCGTTTATTTTTTTTGCATT 1 chrXIV:106904-107692 ( 51) GTTTTTTCCTGTTTTTTTTTT 1 chrXVI:879958-880548 ( 71) TTCTTTTCTCTTTCTTTTTCT 1 chrIV:83356-83843 ( 72) TTTAATTTTTTTTCTTTTTCC 1 chrXIII:352109-352695 ( 25) TTTTTTTACTTTTCATTCGTT 1 chrXI:430010-431402 ( 59) ATTATTTCCTCTTTTTTTTTC 1 chrXIII:851835-852870 ( 1) GCTTTTTTTTTTTCTTTTCGT 1 chrXI:578763-579381 ( 72) TTATTTTCATTTTTTTTCTTT 1 chrV:100698-102765 ( 9) TTCTTTTTCTTTTCATTTTTC 1 chrXVI:172896-174138 ( 75) TTTGCTAACATTTTTTTCATT 1 chrVII:986846-987829 ( 70) GTTTTTTATTTTTTTTTGGGT 1 chrVIII:491899-493962 ( 58) TTTTTTTCATTTTTGTTTATT 1 chrXIII:807691-808552 ( 73) TTGGTTTCTTTTTCTTACCTT 1 chrVII:875065-875465 ( 9) TTTTTTTCTTTATTTACTTCC 1 chrXIII:510888-512122 ( 76) TTTGCTGCTGTTTCTTTCGTC 1 chrV:225178-225725 ( 18) ATTTTTATTTTTTTTTCCATC 1 chrVIII:147533-148762 ( 24) TTCGTTTCTATTTATTTCATT 1 chrXIII:131588-132078 ( 20) TTTGTTTCTTCTTTTTTGAAT 1 chrXII:366050-366573 ( 77) TTTCGTTTTTTTTTTATCATC 1 chrXIII:158469-158821 ( 80) TTCCTTTCTTGTTCTTTTACT 1 chrXII:214614-215155 ( 25) ATTTTTTACTTTTATTCTCCT 1 chrII:237670-238608 ( 6) TTCTTTTTTTCATTTTCTGCT 1 chrXIV:288785-290978 ( 68) TCCTCTTCCTCTTTTCCTACT 1 chrXII:1028807-1030405 ( 20) TTAGCTTCCTTCTTTTCCTTC 1 chrII:544514-544969 ( 61) TTTATTTCCGCTTTTATTTCC 1 chrVIII:396577-397213 ( 3) GTTTCTTCCGTATTTTTTCTC 1 chrIII:78272-79329 ( 42) GTTCTTGATTTTTTTTTTGTT 1 chrVII:156180-157615 ( 66) TCCTGTATCTTTTTTTTTATC 1 chrVII:914603-915248 ( 51) ATGCCTTTTTTTTTTTTTCTC 1 chrVIII:447807-448503 ( 56) TTTGTTTACATTTTCATTACT 1 chrII:625045-625592 ( 35) TTTACTTACTCTTTTACCCTC 1 chrXV:903642-905752 ( 76) TTTTCTTAATTTTATATTTCT 1 chrII:88912-89520 ( 52) TTTGGTTTCTTTTCATCTCTT 1 chrIV:1116837-1117290 ( 15) TTTGTTTACCTTTTTAGCTCT 1 chrVIII:74656-76945 ( 55) TTAGATTCCTCTTTTTCTCGT 1 chrX:73482-73582 ( 72) TCTTCTACCTCTTCTACCACC 1 chrXVI:286066-287585 ( 70) TTTCTTTATTTTTTTAATGGT 1 chrIV:520728-521500 ( 2) TTTTATTTTTCTTTCTTGGCT 1 chrV:138463-140794 ( 78) TCTGCTTCCACTTCTACTGCC 1 chrXIV:715950-717184 ( 4) GTCTCTTTTTCTTTTCTGCCT 1 chrVII:31266-31891 ( 64) TCTACTTCTTTTTCCTGTACC 1 chrIV:1362015-1362787 ( 1) TTCGTTTACTCATTGTTTATT 1 chrIV:720402-722903 ( 79) TTTTCTAACTATTTTTTTTGC 1 chrXIII:192112-192608 ( 65) ATCTATATCTTTTCTTTTAGT 1 chrXIV:567902-568559 ( 70) ACTTATTCCTTTTCTAGTATT 1 chrXVI:188497-189208 ( 23) TACGATTTTTTTTTTTTCGTT 1 chrXI:463433-463906 ( 17) TGCGTTTTCTTTTTTTACACC 1 chrXV:832220-832881 ( 54) TTCCTTTACTATTTTATTCTT 1 chrIV:322137-323640 ( 37) TTCTTCTTCGTTTCTCTTTCT 1 chrXIII:124410-124605 ( 20) TTTGTTATATTTTTCTTCAGT 1 chrXV:472882-473537 ( 32) ATGTCTTCCTTTTCTTAGTTT 1 chrXVI:329036-329708 ( 59) TTTGTTTACGTTTTTTTCTGA 1 chrIV:667764-668219 ( 44) TTTTATTTTTTCTCCTCTATT 1 chrV:349639-350086 ( 60) TCAGTTACTTCTTCTATCTTC 1 chrIII:176717-179364 ( 19) TTTGTCAACTTTTTTTTCGAT 1 chrXII:406266-407580 ( 13) GTATTTTTTTCTTCTAGCACT 1 chrVIII:372517-373471 ( 4) GTTGCTGCTGTCTCTTTTGTT 1 chrII:159829-160198 ( 20) TTTGTTTTTTTTCTGTGTGTC 1 chrXIV:88229-89984 ( 9) TTTGCTATTGCTTCATTTTTT 1 chrXII:65170-65789 ( 25) TTCGTTTCTTTTTTCAGGGGC 1 chrII:311555-311890 ( 8) TTTGTTTATATATTTCCTATT 1 chrVI:63819-65356 ( 36) TTTGATAACTTTTTGCTTTCT 1 chrIV:465137-465745 ( 28) TTTTCTATTTTCTTTAGGTCT 1 chrIV:281694-282396 ( 58) ATTACTATTTTTTCTATGGTT 1 chrXI:313078-313628 ( 75) TTATTTTTTTCCTTTAGCCTT 1 chrIV:218275-218839 ( 66) TTCTACTACACTTTTTTTTTC 1 chrXII:784137-784777 ( 48) TTTTTTTAATTTCTTTACTCC 1 chrVII:771958-772327 ( 1) GTTACTGACACTTTTTTTTCT 1 chrXVI:192181-192812 ( 42) TCATTTTCAGTTTTTCTTGTC 1 chrV:207131-207698 ( 64) ATATTTATTTTTTATATTCTT 1 chrXIV:720670-724029 ( 66) TTTCCTTCTTCATATACTCTT 1 chrVII:544383-546125 ( 64) TCTTTTTTTATATTTTTCCAT 1 chrXV:109128-111272 ( 31) ATTACTTTCGTTTTTAACCTC 1 chrVIII:466781-467293 ( 79) ACCGGTATTATTTTTTTTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYTTHYTTTTTTTTTNYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.0575 E= 4.2e-056 -110 -1324 -50 122 -491 -29 -420 141 -191 19 -188 107 -174 -120 80 67 -159 61 -188 84 -1324 -220 -1324 163 -82 -1324 -220 134 -16 89 -1324 26 -210 105 -1324 79 -159 -320 -103 134 -391 5 -320 130 -210 -162 -1324 148 -1324 -320 -1324 166 -210 66 -1324 102 -291 -162 -220 146 -52 -162 -1324 122 -210 -29 -88 111 -1324 61 -103 99 -5 -11 5 9 -333 71 -88 84 -491 80 -1324 109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYTTHYTTTTTTTTTNYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 97 E= 4.2e-056 0.144330 0.000000 0.134021 0.721649 0.010309 0.154639 0.010309 0.824742 0.082474 0.216495 0.051546 0.649485 0.092784 0.082474 0.329897 0.494845 0.103093 0.288660 0.051546 0.556701 0.000000 0.041237 0.000000 0.958763 0.175258 0.000000 0.041237 0.783505 0.278351 0.350515 0.000000 0.371134 0.072165 0.391753 0.000000 0.536082 0.103093 0.020619 0.092784 0.783505 0.020619 0.195876 0.020619 0.762887 0.072165 0.061856 0.000000 0.865979 0.000000 0.020619 0.000000 0.979381 0.072165 0.298969 0.000000 0.628866 0.041237 0.061856 0.041237 0.855670 0.216495 0.061856 0.000000 0.721649 0.072165 0.154639 0.103093 0.670103 0.000000 0.288660 0.092784 0.618557 0.298969 0.175258 0.195876 0.329897 0.030928 0.309278 0.103093 0.556701 0.010309 0.329897 0.000000 0.659794 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKYTTHYTTTTTTTTTNYY MEME-3 regular expression -------------------------------------------------------------------------------- TT[TC][TG][TC]TT[TCA][TC]TTTT[TC]T[TA]T[TC][TA][TC][TC] -------------------------------------------------------------------------------- Time 986.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:372864-375874 8.07e-01 100 chrVIII:358270-358780 2.12e-09 11_[+1(7.69e-08)]_33_[+2(5.52e-09)]_\ 6 chrXV:116380-117755 1.87e-01 100 chrVII:205351-206462 8.97e-01 100 chrXI:306839-307384 5.78e-01 100 chrI:166057-166605 8.56e-07 28_[-1(5.53e-11)]_51 chrIV:1344819-1345776 2.46e-03 72_[-3(4.88e-07)]_7 chrXVI:828428-828590 9.80e-01 100 chrXIII:659304-659710 9.62e-02 100 chrVII:541617-542144 3.69e-06 61_[-1(1.73e-09)]_18 chrVII:398460-401759 3.15e-01 100 chrXI:379443-379971 7.62e-12 22_[-2(7.02e-10)]_15_[-1(8.96e-10)]_\ 13 chrIV:601726-602377 8.39e-01 100 chrIII:82012-82801 6.85e-01 100 chrXVI:435389-436169 9.25e-01 100 chrIV:1011816-1013663 6.71e-01 100 chrXI:578763-579381 5.49e-08 8_[-1(9.84e-09)]_42_[-3(9.14e-07)]_\ 8 chrIX:316702-318272 4.83e-01 100 chrXIV:567902-568559 2.61e-08 7_[-1(1.33e-09)]_41_[+3(1.49e-05)]_\ 10 chrIV:892115-892689 9.18e-01 100 chrXII:448424-448916 2.47e-05 38_[+1(1.52e-09)]_41 chrIX:299979-300498 3.11e-06 48_[+1(1.17e-09)]_31 chrII:237670-238608 6.48e-03 5_[-3(2.84e-06)]_74 chrXI:463433-463906 1.53e-02 16_[-3(1.63e-05)]_63 chrXVI:246236-246774 3.29e-01 100 chrVII:397905-398222 6.07e-01 100 chrXV:859853-860846 9.88e-01 100 chrXII:97166-98023 2.09e-01 100 chrVII:875065-875465 1.37e-03 8_[+3(1.64e-06)]_71 chrXV:908110-909015 8.80e-01 100 chrXIII:168622-169403 9.91e-01 100 chrV:135196-135682 6.04e-06 44_[+1(1.17e-09)]_35 chrXVI:627226-627646 7.08e-01 100 chrII:408617-409142 8.16e-01 100 chrIV:601245-601505 5.07e-01 100 chrXV:778198-779469 9.77e-01 100 chrIV:750217-751358 5.03e-01 100 chrXIII:759119-763171 6.92e-01 100 chrVII:31266-31891 7.78e-03 63_[+3(1.24e-05)]_16 chrXII:780677-781868 2.81e-01 100 chrVIII:214150-214354 6.97e-04 52_[+3(1.05e-07)]_27 chrX:523864-523964 5.99e-07 26_[+2(6.69e-11)]_45 chrVII:276954-279919 7.30e-01 100 chrVIII:396577-397213 5.75e-04 2_[-3(3.16e-06)]_77 chrXII:921236-922577 6.61e-01 100 chrXIII:279371-280431 8.94e-04 41_[+3(1.22e-07)]_[+3(7.82e-06)]_17 chrXIV:215713-217574 4.62e-01 100 chrXIV:720670-724029 9.38e-02 65_[+3(7.40e-05)]_14 chrVII:363697-364462 4.61e-01 100 chrXVI:789370-789958 3.17e-01 100 chrXIII:122897-124243 7.98e-01 100 chrIV:1362015-1362787 4.15e-03 [-3(1.36e-05)]_79 chrXV:710024-710713 3.19e-02 100 chrXIII:252228-253578 6.20e-01 100 chrVII:877766-879020 4.12e-01 100 chrXI:558475-559468 5.12e-01 100 chrX:374181-374281 1.08e-08 35_[+1(2.00e-08)]_13_[+2(7.53e-08)]_\ 2 chrVI:183204-183957 2.03e-01 100 chrXVI:338466-341050 7.70e-01 100 chrVI:63819-65356 6.14e-02 35_[+3(3.46e-05)]_44 chrXI:309124-309892 1.23e-01 100 chrXII:837560-839660 1.59e-01 100 chrXII:47353-49418 2.86e-01 100 chrXI:7795-8179 9.62e-01 100 chrV:151161-153228 1.36e-01 100 chrII:347407-347907 8.17e-04 49_[-1(6.21e-07)]_30 chrVII:115241-115769 4.54e-04 32_[-2(5.10e-08)]_39 chrXIII:334949-335405 5.98e-01 100 chrXIV:88229-89984 2.45e-03 8_[-3(2.94e-05)]_71 chrXIII:23608-26702 3.43e-02 59_[+1(3.68e-05)]_20 chrXII:534538-535591 4.11e-01 100 chrVII:972332-974027 9.94e-01 100 chrXI:83951-84425 1.63e-05 69_[-2(9.84e-09)]_2 chrXI:513145-513607 1.82e-06 14_[+1(3.53e-08)]_13_[+2(2.04e-05)]_\ 23 chrXII:975775-976234 1.84e-08 11_[-3(6.31e-07)]_5_[+1(1.15e-07)]_\ 42 chrII:592305-593308 1.53e-01 13_[-2(9.91e-05)]_58 chrV:207131-207698 6.44e-05 34_[-1(5.52e-07)]_8_[+3(7.40e-05)]_\ 16 chrXII:424075-424494 8.14e-01 100 chrII:139490-140995 4.74e-01 100 chrII:236248-237384 7.89e-02 100 chrVII:110440-110907 3.23e-04 10_[+1(5.52e-07)]_69 chrXVI:560020-560486 2.12e-09 3_[+1(7.69e-08)]_33_[+2(5.52e-09)]_\ 14 chrV:469269-469711 7.83e-12 16_[-2(7.02e-10)]_15_[-1(8.96e-10)]_\ 19 chrXIV:642108-643164 1.41e-01 100 chrVII:736205-736727 3.78e-01 100 chrXII:368140-371840 7.24e-01 100 chrXVI:432914-434362 7.51e-01 100 chrII:413898-415318 6.67e-01 100 chrXV:1027763-1029355 8.85e-01 100 chrVII:1019403-1022529 5.09e-01 100 chrVI:167269-167726 3.14e-05 48_[-1(6.51e-08)]_31 chrX:705063-705163 2.80e-01 100 chrXVI:108558-114704 4.99e-02 100 chrVII:730959-731472 5.04e-04 15_[-1(1.15e-07)]_64 chrXV:251228-255134 6.72e-02 11_[-2(8.44e-05)]_60 chrVII:648083-648496 7.38e-01 100 chrXVI:303045-304363 1.38e-01 100 chrXII:521872-523580 2.10e-01 100 chrXVI:818659-818914 3.00e-01 100 chrVIII:236209-238120 7.97e-01 100 chrV:362686-363294 8.92e-01 100 chrXI:617680-619251 9.41e-01 100 chrXVI:644778-646341 7.00e-01 100 chrXII:1017681-1019348 7.95e-01 100 chrXII:253110-255314 2.89e-01 100 chrXVI:775608-776065 1.77e-04 21_[+2(1.42e-08)]_50 chrVII:986846-987829 2.96e-04 69_[+3(1.03e-06)]_10 chrXVI:879958-880548 4.60e-03 70_[-3(7.16e-07)]_9 chrXII:1042912-1043606 1.42e-01 100 chrXV:128528-129134 4.77e-01 100 chrXIII:124410-124605 2.64e-02 19_[-3(1.93e-05)]_60 chrIV:1278610-1279126 7.91e-01 100 chrV:343447-343613 3.13e-02 100 chrVI:53054-55702 4.28e-01 100 chrIX:177597-178041 1.43e-01 100 chrXVI:901307-902283 8.98e-02 100 chrXV:594014-594673 2.18e-10 3_[-3(1.88e-07)]_45_[+1(1.30e-10)]_\ 10 chrIII:287712-288146 9.95e-01 100 chrIV:1239338-1240440 3.89e-01 100 chrXV:471901-472474 9.64e-01 100 chrVII:598338-599485 3.45e-01 100 chrXIII:549525-553495 9.57e-01 100 chrVIII:48124-48522 3.04e-01 100 chrIV:322137-323640 3.26e-02 36_[-3(1.93e-05)]_43 chrV:138463-140794 2.19e-02 77_[-3(9.44e-06)]_2 chrVII:344041-345271 5.73e-01 100 chrXVI:74650-76682 3.17e-04 33_[-2(4.70e-08)]_38 chrXIII:696423-697155 4.58e-01 100 chrII:238792-239235 8.11e-01 100 chrX:390793-390893 5.98e-05 41_[+1(9.04e-08)]_38 chrVII:479026-483043 6.39e-02 100 chrX:227736-227836 1.41e-01 100 chrIII:67044-68670 9.73e-01 100 chrXII:92379-92837 2.60e-06 62_[-1(1.33e-09)]_17 chrII:477157-477796 3.61e-04 74_[+3(4.27e-07)]_5 chrXIII:556613-558545 1.59e-01 100 chrXIV:392049-392794 6.88e-01 100 chrIV:681450-681909 6.29e-01 100 chrIV:525437-527520 5.33e-01 100 chrII:625045-625592 9.85e-03 34_[-3(5.29e-06)]_45 chrXI:158216-159681 1.70e-01 100 chrIX:370139-370702 8.78e-02 100 chrXI:333744-335033 2.94e-01 100 chrXV:762246-762477 9.73e-01 100 chrX:191278-191378 3.49e-01 100 chrXIII:510888-512122 5.23e-04 75_[+3(1.83e-06)]_4 chrVII:255170-255698 4.94e-01 100 chrIV:562680-563452 1.17e-01 100 chrX:632852-632952 9.44e-01 100 chrVII:845277-845921 6.06e-01 100 chrXIII:861110-861536 3.27e-01 100 chrVII:771958-772327 7.22e-02 [+3(5.94e-05)]_79 chrXIII:378619-379628 2.85e-01 100 chrXII:953986-954743 8.43e-01 100 chrVII:1026797-1027139 9.63e-01 100 chrII:100982-101627 5.00e-01 100 chrIV:644996-645523 6.25e-01 100 chrVIII:381207-383776 8.09e-01 100 chrXVI:403302-407898 4.96e-01 100 chrXII:300019-301081 1.23e-01 100 chrVII:857112-857642 3.38e-02 100 chrXIII:192112-192608 2.88e-02 64_[+3(1.49e-05)]_15 chrV:288218-288735 3.56e-12 25_[+1(1.13e-06)]_23_[+2(3.72e-11)]_\ 2 chrVI:162057-162466 1.63e-13 16_[-2(4.99e-09)]_12_[-1(1.77e-11)]_\ 22 chrIV:975834-976772 1.32e-01 100 chrXII:214614-215155 9.88e-10 24_[-3(2.84e-06)]_12_[+1(5.53e-11)]_\ 22 chrXII:897679-899973 7.59e-01 100 chrVII:919591-920180 7.04e-01 100 chrX:233699-233799 3.30e-09 33_[-2(2.07e-07)]_14_[-1(3.86e-08)]_\ 3 chrXV:109128-111272 1.73e-01 30_[+3(7.96e-05)]_49 chrVIII:455501-456179 1.02e-01 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1.86e-01 100 chrIV:1256807-1257258 1.42e-12 34_[+1(4.13e-12)]_13_[+2(6.08e-07)]_\ 3 chrVIII:504138-504646 7.85e-01 100 chrXIV:771836-772374 4.20e-02 51_[-1(5.24e-05)]_28 chrI:182413-182753 5.08e-07 41_[+2(6.69e-11)]_30 chrIII:123346-123779 1.02e-08 73_[+1(5.20e-13)]_6 chrIV:619663-620231 7.61e-02 100 chrVII:95026-96712 8.78e-04 13_[-3(1.41e-07)]_66 chrI:141472-143668 2.71e-01 100 chrV:66905-69369 4.31e-01 100 chrVIII:400833-402025 3.15e-01 100 chrVI:204771-205182 1.86e-16 6_[+1(5.53e-11)]_14_[+2(1.50e-13)]_\ 30 chrXIV:495258-495745 2.72e-01 100 chrXVI:514319-517339 1.44e-01 100 chrXII:728037-730810 8.19e-02 100 chrXVI:425781-426014 2.95e-01 100 chrXII:22783-23235 9.18e-01 100 chrXV:258905-259975 2.51e-02 100 chrXII:734606-735001 1.93e-08 48_[-2(6.74e-13)]_23 chrXII:722649-723515 6.92e-01 100 chrIII:127528-128087 1.83e-09 2_[-1(1.15e-07)]_16_[+3(2.50e-09)]_\ 40 chrXI:248033-248776 4.06e-01 100 chrXV:234226-234822 3.79e-01 100 chrXIII:388921-391012 2.07e-02 55_[-1(4.40e-05)]_24 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9_[-1(3.53e-08)]_70 chrXIII:219870-221161 4.74e-01 100 chrVIII:74656-76945 3.99e-04 54_[+3(8.60e-06)]_25 chrX:339285-339385 7.52e-02 100 chrV:282096-284305 1.48e-01 100 chrXIII:504672-505243 1.94e-01 100 chrII:796306-798001 1.16e-01 100 chrVIII:388685-389199 4.12e-06 9_[+1(1.33e-09)]_70 chrXI:364354-365218 2.95e-01 100 chrXII:844180-846183 6.39e-01 100 chrXV:677785-679178 9.48e-01 100 chrIV:359201-359897 4.94e-01 100 chrVIII:475485-475887 1.12e-07 78_[+1(5.53e-11)]_1 chrX:617710-617810 5.86e-09 3_[-2(2.01e-11)]_42_[-1(3.95e-05)]_\ 5 chrXVI:701854-702331 2.44e-01 100 chrII:88912-89520 2.43e-02 51_[+3(7.82e-06)]_28 chrV:363620-364472 4.08e-01 100 chrIV:1269840-1271071 3.10e-01 100 chrX:197121-197221 1.28e-16 [+1(5.53e-11)]_14_[+2(1.50e-13)]_36 chrIX:324148-324567 1.82e-06 4_[+1(3.53e-08)]_13_[+2(2.04e-05)]_\ 33 chrIV:541214-542435 3.06e-01 100 chrV:225178-225725 1.11e-02 17_[+3(2.05e-06)]_62 chrIV:946179-946633 6.22e-05 14_[-1(6.51e-08)]_65 chrXI:333369-333580 7.78e-01 100 chrIV:913950-914913 5.60e-01 100 chrXVI:329036-329708 4.70e-03 58_[+3(2.29e-05)]_21 chrXV:79548-80037 4.48e-01 100 chrXI:202859-203333 1.64e-01 100 chrXII:720038-722301 7.99e-01 100 chrXVI:280433-281832 8.66e-01 100 chrXV:899752-901286 9.39e-01 100 chrII:135959-136316 2.25e-01 100 chrV:100698-102765 3.10e-03 8_[+3(1.03e-06)]_71 chrXIV:575017-577479 7.77e-01 100 chrIV:1175609-1176065 1.37e-04 41_[-2(6.45e-08)]_30 chrIII:137376-139432 7.39e-01 100 chrIII:176717-179364 2.38e-02 18_[-3(2.49e-05)]_61 chrXVI:378707-378986 1.55e-01 100 chrV:284706-286157 6.08e-01 100 chrXIV:632431-632895 1.73e-05 29_[-1(1.15e-07)]_50 chrV:287415-287762 2.94e-01 100 chrXIII:309672-310108 2.08e-01 100 chrV:141114-141470 8.97e-01 100 chrXII:656683-657192 2.02e-07 55_[+1(5.53e-11)]_24 chrXV:903642-905752 2.12e-02 75_[-3(6.44e-06)]_4 chrII:504452-504720 2.68e-05 7_[+3(4.27e-07)]_72 chrXIV:493300-495075 3.33e-01 100 chrXIV:173095-174690 9.83e-01 100 chrVI:157699-158232 2.12e-09 9_[+1(7.69e-08)]_33_[+2(5.52e-09)]_\ 8 chrVII:206718-206888 8.58e-01 100 chrXV:1011405-1012844 5.37e-02 100 chrIX:420750-421008 8.24e-01 100 chrVIII:84783-85568 5.07e-01 100 chrIV:218275-218839 2.82e-02 65_[-3(5.11e-05)]_14 chrIV:118405-118892 5.81e-01 100 chrXV:779768-780995 2.12e-01 100 chrIX:142071-143060 2.08e-01 100 chrVII:959320-959610 2.51e-01 100 chrVIII:119689-121876 8.60e-01 100 chrXV:663427-664095 6.77e-01 100 chrXIII:752970-754263 7.13e-01 100 chrVIII:516661-519102 5.06e-01 100 chrXI:146763-147344 7.50e-01 100 chrXII:673049-675146 1.47e-01 100 chrVI:180694-181235 3.94e-07 68_[+1(1.77e-11)]_11 chrII:193306-193996 7.22e-01 100 chrXIII:807691-808552 6.24e-03 72_[+3(1.64e-06)]_7 chrII:234720-236073 3.73e-01 100 chrXI:431860-433014 6.10e-01 100 chrXI:517750-518323 3.71e-18 1_[-2(1.50e-13)]_14_[-1(5.53e-11)]_\ 35 chrIV:1161494-1161881 3.78e-02 54_[+3(7.40e-05)]_25 chrXIII:501069-502062 6.09e-01 100 chrIV:308112-310218 2.44e-01 100 chrIII:107066-107841 1.45e-03 49_[-3(2.17e-07)]_30 chrVII:700084-701243 1.23e-05 61_[-2(4.08e-09)]_10 chrVII:976760-977249 7.07e-01 100 chrXV:514397-514792 8.38e-01 100 chrXIII:650695-653016 2.33e-01 100 chrIV:129431-130869 9.55e-01 100 chrXV:854024-854421 2.36e-14 23_[+1(5.53e-11)]_14_[+2(2.74e-11)]_\ 13 chrXIV:104610-105162 2.19e-04 11_[-1(3.53e-08)]_68 chrII:642835-643265 2.88e-08 15_[+1(3.14e-07)]_13_[+2(1.42e-08)]_\ 22 chrXV:832220-832881 5.06e-02 53_[+3(1.77e-05)]_26 chrIV:410194-410755 1.35e-02 100 chrXIV:288785-290978 7.49e-03 67_[-3(3.16e-06)]_12 chrXV:960898-963083 6.56e-01 100 chrIV:448826-450091 9.20e-01 100 chrII:165064-165848 1.41e-02 100 chrIII:168099-168609 6.15e-11 5_[+1(1.52e-09)]_13_[+2(4.70e-08)]_\ 32 chrV:61002-62148 2.63e-01 100 chrIV:802575-803008 5.25e-06 32_[+2(4.70e-08)]_39 chrX:517662-517762 1.01e-04 1_[-1(4.89e-05)]_18_[+2(8.60e-07)]_\ 31 chrIV:1016436-1017479 6.73e-01 100 chrXV:770024-770596 4.88e-01 100 chrVII:650983-651304 9.18e-01 100 chrVII:914603-915248 1.78e-02 50_[-3(4.32e-06)]_29 chrXVI:869321-870476 4.42e-01 100 chrII:45530-46936 7.91e-01 100 chrV:166828-167668 5.47e-01 100 chrV:396693-397984 8.34e-01 100 chrII:168327-169714 1.92e-02 25_[-1(9.79e-05)]_54 chrVII:774154-774620 1.90e-17 11_[-2(1.50e-13)]_14_[-1(5.53e-11)]_\ 25 chrXIV:63177-64656 1.42e-01 100 chrIV:995392-996224 8.69e-01 100 chrIII:58679-59106 9.88e-01 100 chrXIII:158469-158821 1.60e-02 79_[+3(2.84e-06)] chrIV:915087-916240 1.99e-01 100 chrVII:930750-931211 2.29e-17 2_[-3(6.56e-08)]_8_[+1(1.77e-11)]_\ 12_[+2(4.99e-09)]_7 chrX:348834-348934 3.78e-01 100 chrX:139163-139263 1.39e-01 100 chrI:71547-73738 6.08e-01 100 chrXIV:585421-586610 7.98e-01 100 chrXI:46336-46972 7.41e-01 100 chrVI:224275-225390 8.23e-01 100 chrVII:779419-779940 1.54e-07 28_[-1(3.83e-10)]_51 chrIII:224934-225427 8.56e-01 100 chrXII:167766-168245 4.70e-07 41_[+2(6.69e-11)]_30 chrVII:786893-788724 5.60e-01 100 chrVII:794164-794723 2.36e-14 23_[-2(2.74e-11)]_14_[-1(5.53e-11)]_\ 13 chrIV:385260-387789 5.87e-01 100 chrVII:1004036-1004410 1.75e-04 42_[-2(5.52e-08)]_29 chrIV:83356-83843 5.89e-11 39_[-1(1.77e-11)]_11_[+3(8.10e-07)]_\ 8 chrXI:67290-69214 2.40e-01 100 chrIV:1116837-1117290 1.52e-02 14_[+3(8.60e-06)]_65 chrXV:967966-968452 1.39e-01 100 chrVII:544383-546125 1.27e-01 63_[+3(7.96e-05)]_16 chrXIV:602086-602552 7.37e-09 42_[-2(6.74e-13)]_29 chrII:604170-607729 1.05e-01 100 chrII:197251-197851 2.59e-06 36_[-1(7.81e-10)]_43 chrII:266178-266694 1.18e-05 34_[-1(3.53e-08)]_45 chrIV:507575-510009 2.34e-01 100 chrXIV:102491-103157 7.87e-04 11_[+3(4.27e-07)]_68 chrIV:1086389-1087422 2.44e-01 100 chrVIII:447807-448503 2.34e-02 55_[-3(4.78e-06)]_24 chrXII:1064953-1065260 4.57e-01 100 chrVII:726518-726744 7.57e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************