Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/BY4742--RPD3.fa
Database contains 944 sequences, 1024517 residues

MOTIFS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
GRVTCGAA 8 GAATCGAA
KCTACCR 7 TCTACCA
AAAAAWR 7 AAAAAAA
ACCACTM 7 ACCACTA
TGCCAKA 7 TGCCATA
GCCAAGW 7 GCCAAGA
CGYCCA 6 CGCCCA
AGCATGSG 8 AGCATGCG
TATATANA 8 TATATATA
GGGAATTK 8 GGGAATTG

Random model letter frequencies (/srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/background):
A 0.310 C 0.190 G 0.190 T 0.310

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CGYCCA DREME-7 chrIII + 17094 17099 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV + 24332 24337 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrV + 51951 51956 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVIII + 56309 56314 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI + 67302 67307 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI + 67857 67862 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIX + 69535 69540 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 73834 73839 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 74555 74560 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVI + 75614 75619 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 76574 76579 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVIII + 85303 85308 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV + 87310 87315 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 87410 87415 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV + 89927 89932 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV + 96307 96312 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI + 99973 99978 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV + 102598 102603 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI + 106535 106540 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII + 108468 108473 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI + 110104 110109 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 110328 110333 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI + 114110 114115 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 117538 117543 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrV + 117971 117976 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVIII + 122443 122448 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrV + 122572 122577 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 128802 128807 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 132413 132418 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI + 159109 159114 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX + 160147 160152 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 161847 161852 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIII + 164271 164276 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX + 172647 172652 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX + 172667 172672 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV + 174008 174013 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVI + 183807 183812 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 192552 192557 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 196132 196137 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI + 246735 246740 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 253921 253926 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 253947 253952 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 281851 281856 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII + 282024 282029 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 302974 302979 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 305430 305435 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI + 308149 308154 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIX + 324344 324349 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 331295 331300 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIX + 336390 336395 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI + 340380 340385 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 372450 372455 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX + 374465 374470 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrII + 374621 374626 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVIII + 375237 375242 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVIII + 376077 376082 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 384767 384772 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 386919 386924 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrV + 386954 386959 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 388183 388188 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVIII + 388957 388962 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVIII + 388990 388995 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 391791 391796 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 391870 391875 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 412299 412304 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 420593 420598 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrV + 422583 422588 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI + 433417 433422 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 465396 465401 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrII + 466623 466628 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI + 513373 513378 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 514551 514556 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII + 515572 515577 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 544618 544623 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI + 569526 569531 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 586641 586646 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX + 607959 607964 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX + 609233 609238 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 610022 610027 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX + 647161 647166 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII + 657001 657006 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 663817 663822 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 679159 679164 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 680000 680005 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII + 687864 687869 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 703017 703022 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 706936 706941 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII + 712216 712221 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 759391 759396 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 761113 761118 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 761812 761817 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 762402 762407 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII + 764361 764366 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 766372 766377 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 768436 768441 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI + 770639 770644 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 772213 772218 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 797772 797777 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII + 806117 806122 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI + 832089 832094 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 842102 842107 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII + 880944 880949 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 904020 904025 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 915651 915656 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV + 978913 978918 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII + 1029312 1029317 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 1080799 1080804 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 1117117 1117122 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 1237806 1237811 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 1355503 1355508 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 1461609 1461614 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 1468415 1468420 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 1490130 1490135 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV + 1490244 1490249 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI - 21451 21456 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 24229 24234 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 65524 65529 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI - 68523 68528 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV - 74473 74478 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI - 75424 75429 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX - 75565 75570 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX - 75631 75636 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 87259 87264 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV - 89472 89477 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 92579 92584 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVI - 101407 101412 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 108668 108673 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 109485 109490 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX - 123213 123218 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII - 123676 123681 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrV - 135362 135367 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrI - 139183 139188 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVI - 148337 148342 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 148769 148774 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 156455 156460 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 157390 157395 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX - 159836 159841 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVI - 167680 167685 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIII - 177420 177425 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVI - 183584 183589 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVI - 183822 183827 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX - 204758 204763 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV - 216643 216648 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII - 223390 223395 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVI - 223735 223740 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrII - 235475 235480 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrII - 235664 235669 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 253908 253913 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI - 258702 258707 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 271754 271759 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrV - 284884 284889 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 288503 288508 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 300889 300894 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 301128 301133 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII - 302970 302975 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 317042 317047 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI - 327661 327666 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI - 338540 338545 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrV - 341484 341489 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX - 355479 355484 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 370795 370800 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 371291 371296 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVIII - 374726 374731 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX - 378421 378426 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI - 379741 379746 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVIII - 381666 381671 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 382977 382982 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 384797 384802 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIX - 394828 394833 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 400800 400805 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrII - 405983 405988 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 407258 407263 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV - 410377 410382 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX - 412859 412864 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV - 418042 418047 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 427155 427160 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 436636 436641 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrV - 438761 438766 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 438878 438883 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV - 442807 442812 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII - 463577 463582 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 464481 464486 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrV - 469518 469523 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 479212 479217 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII - 511703 511708 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXI - 517986 517991 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 531633 531638 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX - 541531 541536 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV - 547125 547130 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII - 549797 549802 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVIII - 556702 556707 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV - 562992 562997 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV - 568146 568151 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV - 568987 568992 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 571981 571986 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIV - 576265 576270 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII - 626113 626118 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrX - 633555 633560 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI - 645545 645550 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 661873 661878 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII - 661980 661985 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 665243 665248 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 702948 702953 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 708149 708154 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 721173 721178 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrII - 728273 728278 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII - 759273 759278 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 766559 766564 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 771980 771985 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 774347 774352 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 793941 793946 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 809482 809487 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI - 818384 818389 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI - 820302 820307 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 823543 823548 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 823690 823695 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 832447 832452 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXIII - 852762 852767 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXVI - 870205 870210 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 896679 896684 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 898553 898558 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXII - 930818 930823 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 968274 968279 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 977068 977073 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 980681 980686 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrXV - 980714 980719 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 987392 987397 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV - 1016543 1016548 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrVII - 1050515 1050520 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV - 1164394 1164399 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV - 1202030 1202035 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV - 1345510 1345515 7.61e-05 0.665 CGCCCA
CGYCCA DREME-7 chrIV - 1466729 1466734 7.61e-05 0.665 CGCCCA
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/background --motif CGYCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/BY4742--RPD3.fa

Settings: 


  

    output_directory = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/fimo_out_7
    MEME file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/dreme_out/dreme.xml
    sequence file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/BY4742--RPD3.fa
  
  

    background file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--RPD3/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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