******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--PDR8/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:3-1323 1.0000 100 chrI:81818-82353 1.0000 100 chrI:138795-139378 1.0000 100 chrI:142092-143677 1.0000 100 chrI:166011-166820 1.0000 100 chrI:180964-181491 1.0000 100 chrI:182307-182772 1.0000 100 chrI:229118-230194 1.0000 100 chrII:9333-9910 1.0000 100 chrII:36147-36591 1.0000 100 chrII:36774-36951 1.0000 100 chrII:44946-45371 1.0000 100 chrII:60627-61362 1.0000 100 chrII:88979-89980 1.0000 100 chrII:165050-165576 1.0000 100 chrII:167724-168727 1.0000 100 chrII:181292-181675 1.0000 100 chrII:196922-197882 1.0000 100 chrII:226813-227744 1.0000 100 chrII:266136-266740 1.0000 100 chrII:326520-327238 1.0000 100 chrII:332300-333413 1.0000 100 chrII:347353-347937 1.0000 100 chrII:350394-351163 1.0000 100 chrII:405091-405338 1.0000 100 chrII:405549-406322 1.0000 100 chrII:414683-415947 1.0000 100 chrII:476853-477744 1.0000 100 chrII:592847-593501 1.0000 100 chrII:604071-605255 1.0000 100 chrII:605424-607092 1.0000 100 chrII:642893-643255 1.0000 100 chrII:644968-645472 1.0000 100 chrII:680894-682201 1.0000 100 chrIII:1-679 1.0000 100 chrIII:11083-11574 1.0000 100 chrIII:13966-15892 1.0000 100 chrIII:58721-59006 1.0000 100 chrIII:81986-82793 1.0000 100 chrIII:123418-123814 1.0000 100 chrIII:127522-128290 1.0000 100 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chrXV:1028543-1029646 1.0000 100 chrXVI:55806-56556 1.0000 100 chrXVI:76150-76735 1.0000 100 chrXVI:90298-90768 1.0000 100 chrXVI:121405-121790 1.0000 100 chrXVI:135489-135872 1.0000 100 chrXVI:172798-174122 1.0000 100 chrXVI:188523-189106 1.0000 100 chrXVI:194116-194603 1.0000 100 chrXVI:208894-211094 1.0000 100 chrXVI:279754-280217 1.0000 100 chrXVI:280666-282967 1.0000 100 chrXVI:302559-304427 1.0000 100 chrXVI:338649-339198 1.0000 100 chrXVI:377902-379039 1.0000 100 chrXVI:404568-405720 1.0000 100 chrXVI:406165-407776 1.0000 100 chrXVI:435592-436466 1.0000 100 chrXVI:515105-517187 1.0000 100 chrXVI:520124-520545 1.0000 100 chrXVI:559988-560515 1.0000 100 chrXVI:571976-572600 1.0000 100 chrXVI:581842-582441 1.0000 100 chrXVI:622241-622850 1.0000 100 chrXVI:627376-627655 1.0000 100 chrXVI:689094-689837 1.0000 100 chrXVI:699891-700694 1.0000 100 chrXVI:718499-719302 1.0000 100 chrXVI:731716-732332 1.0000 100 chrXVI:743783-744898 1.0000 100 chrXVI:768935-770468 1.0000 100 chrXVI:775640-776100 1.0000 100 chrXVI:794379-796099 1.0000 100 chrXVI:810445-810861 1.0000 100 chrXVI:819164-819982 1.0000 100 chrXVI:856513-857278 1.0000 100 chrXVI:860107-860650 1.0000 100 chrXVI:880158-880600 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--PDR8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--PDR8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--PDR8/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 555 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 55500 N= 555 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.304 C 0.196 G 0.196 T 0.304 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--PDR8/background): A 0.318 C 0.182 G 0.182 T 0.318 ******************************************************************************** ******************************************************************************** MOTIF GGRATCGAACCSVKGAYCTYCNGRTT MEME-1 width = 26 sites = 85 llr = 1621 E-value = 8.5e-341 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRATCGAACCSVKGAYCTYCNGRTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:55:::aa::13:27:1:122:511 pos.-specific C :::2:7:::a7532::6624533211 probability G 7a52::a::::44581:2::127311 matrix T :::2a3::::2::3:2417422::77 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * ** * Relative 1.5 * ****** * * Entropy 1.2 * ******* * * * (27.5 bits) 1.0 *** ******** * * * 0.7 *** ******** * *** * 0.5 *** ***************** **** 0.2 ************************** 0.0 -------------------------- Multilevel GGAATCGAACCCGGGACCTCCCGATT consensus A G T TGCTATT CTTGCG sequence A AT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRATCGAACCSVKGAYCTYCNGRTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrXVI:819164-819982 - 43 5.68e-13 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXIV:602089-602595 - 57 5.68e-13 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXIV:569604-570179 + 37 5.68e-13 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXII:1051740-1052428 + 48 5.68e-13 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrV:550929-551737 + 13 5.68e-13 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIX:210488-210954 - 31 5.68e-13 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIV:667766-668258 + 56 5.68e-13 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIII:123418-123814 + 22 1.81e-12 GGGCGAGCCG GGACTCGAACCCGGGACCTCCCGCAC CCTAAGCGAG chrXV:853995-854447 + 27 1.62e-11 GGACGCAACC GGAATCGAACCGATGACCTCTTCCTT GCAAGGGAAG chrXI:46487-47062 + 22 4.58e-11 GCCCTCTGTG GGAATTGAACCCACGATCCCCGCATT ACGAGTGCGA chrVIII:134041-134663 - 54 4.58e-11 GGTCCTACCC GGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrIV:802534-803015 + 18 4.58e-11 GGTCCTACCC GGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrIV:644968-645390 + 35 4.58e-11 GGTCCTACCC GGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrIII:168075-168625 + 12 4.58e-11 GGTCCTACCC GGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrXVI:581842-582441 - 7 6.95e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATT AAGAGT chrXVI:571976-572600 - 65 6.95e-11 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXIII:480390-480915 + 30 6.95e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrXI:202829-203267 - 37 6.95e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrX:531561-532239 - 12 6.95e-11 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrX:414711-415371 - 11 6.95e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrVII:930754-931265 + 5 6.95e-11 GCCC GGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrVII:185283-186166 + 51 6.95e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrV:135187-135735 + 25 6.95e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIV:1201476-1202119 - 39 6.95e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIV:992574-993227 - 16 6.95e-11 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrX:374202-374848 + 42 7.97e-11 ACTCACGATG GGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrVII:405276-405818 - 8 7.97e-11 ACTCACGATG GGGGTCGAACCCATAATCTTCTGATT AGAAGTC chrII:405549-406322 - 28 7.97e-11 ACTCACGATG GGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrV:130797-131464 + 13 9.11e-11 GGTCTTACCC GGATTCGAACCGGGGTTGTTCGGATC AAAACCGAAA chrVII:541581-542202 - 44 1.54e-10 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrIX:370144-370777 - 42 1.54e-10 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrII:644968-645472 - 32 1.54e-10 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrIV:1075159-1075767 + 70 1.98e-10 GTTCCAACCG AGGATCGAACTCGGGACCTTTGCCGT GTGAA chrXV:663523-664135 + 44 2.24e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:586433-586909 + 26 2.24e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:372143-372773 + 48 2.24e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:320952-321350 + 57 2.24e-10 GGACGAGTCC GGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrXII:656646-657200 + 72 2.24e-10 GGACGAGTCC GGAATCGAACCGGAGACCTCTCCCAT GCT chrXI:379488-379961 - 43 2.24e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrVIII:146007-146459 + 70 2.24e-10 GGACGAGTCC GGAATCGAACCGGAGACCTCTCCCAT GCTAA chrVIII:84990-85602 + 63 2.24e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrVII:73632-74117 + 16 2.24e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrV:469255-469712 - 61 2.24e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrIV:410198-410731 - 1 2.24e-10 GGACGAGTCC GGAATCGAACCGGAGACCTCTCCCAT chrXIV:567867-568530 - 33 2.53e-10 GGGCGAGCTG GGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrXIV:546941-547418 - 31 2.53e-10 GGGCGAGCTG GGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrVIII:388607-389237 + 32 2.53e-10 GGGCGAGCTG GGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrXV:353864-354308 + 16 2.86e-10 GCTTCCAATC GGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrIX:325511-326133 - 12 2.86e-10 GCTTCCAATC GGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrIX:174765-175332 - 69 2.86e-10 CCAATC GGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrIV:434024-434579 + 24 2.86e-10 GCTTCCAATC GGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrII:266136-266740 - 26 2.86e-10 GCTTCCAATC GGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrIV:488460-489140 + 58 4.08e-10 GATCCAACCG AGGTTCGAACTCGGGATCTTCGCCGT GTAAAGGCGA chrXIII:808008-808576 + 15 6.45e-10 GGTCCCACCC GGATTCGAACTGGGGTTGTTCGGATC AGAACCGAAA chrXV:438402-439085 - 9 8.05e-10 TCCTCATAGG GGGCTCGAACCCCTGACATTTCGGTA TCCTTGCT chrXII:875211-875674 - 43 8.05e-10 TCCTCATAGG GGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrXI:578771-579347 - 15 8.05e-10 TCCTCATAGG GGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrX:538326-538811 - 72 8.05e-10 ACG GGACTCGAACCCGCAGTCTTCTCCTT AGGAGGGAGA chrXV:340054-340632 + 17 3.69e-09 TTCCCCGCCA GGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrXV:487225-487709 - 59 4.87e-09 GACCCCAGTG AGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXIV:632397-632858 - 59 4.87e-09 GACCCCAGTG AGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXIV:102495-103072 - 20 4.87e-09 GACCCCAGTG AGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXII:975678-976316 + 47 4.87e-09 GACCCCAGTG AGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXI:74413-74965 - 22 4.87e-09 GACCCCAGTG AGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXVI:55806-56556 + 49 5.33e-09 GAAACGGACA GGAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrIV:1175562-1176260 - 4 5.83e-09 GCTCCAGGGG AGGTTCGAACTCTCGACCTTCAGATT ATG chrXVI:622241-622850 + 56 7.59e-09 GCGAATTCTG TGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrXVI:559988-560515 + 8 7.59e-09 AATTCTG TGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrVIII:466722-467308 - 60 7.59e-09 GCCACCTGCC AGAATTGAACTAGCGACCTTTGCATT ACAAGTGCAA chrIV:1094940-1095776 + 73 7.59e-09 GCGAACTCTG TGGATCGAACACAGGACCTCCAGATA TC chrXVI:743783-744898 - 29 1.48e-08 GCCACCTGTC AGAATTGAACTAACGACCTTTGCATT ACAAGTGCAA chrVI:210444-210899 + 9 2.02e-08 CCCGGGGG CGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrIV:946143-946625 - 30 2.02e-08 CTCCCGGGGG CGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrVII:706957-707356 + 13 2.94e-08 GCTCGCACTC AGGATCGAACTAAGGACCAACAGATT TGCAATCTGC chrXIII:362847-363334 - 59 4.50e-08 GCCATCTCCT AGAATCGAACCAGGGTTTCATCGGCC ACAACGATGT chrXI:313224-313692 + 4 4.50e-08 CCT AGAATCGAACCAGGGTTTCATCGGCC ACAACGATGT chrVIII:62528-63138 - 7 4.50e-08 GCCATCTCCT AGAATCGAACCAGGGTTTCATCGGCC ACAACG chrVII:110401-110955 + 8 4.50e-08 ATCTCCT AGAATCGAACCAGGGTTTCATCGGCC ACAACGATGT chrV:207088-207681 - 58 4.50e-08 GCCATCTCCT AGAATCGAACCAGGGTTTCATCGGCC ACAACGATGT chrXV:709964-710579 - 15 5.16e-08 AGCGCCGCTC GGTTTCGATCCGAGGACATCAGGGTT ATGAGCCCTG chrX:517612-518092 + 22 5.16e-08 AGCGCCGCTC GGTTTCGATCCGAGGACATCAGGGTT ATGAGCCCTG chrXV:571673-572290 - 62 1.49e-07 TCCGCGACGG GGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXII:426903-427470 - 31 1.49e-07 TCCGCGACGG GGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrX:355082-355922 - 39 1.49e-07 TCCGCGACGG GGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrIX:323994-324606 + 64 1.49e-07 TCCGCGACGG GGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRATCGAACCSVKGAYCTYCNGRTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:819164-819982 5.7e-13 42_[-1]_32 chrXIV:602089-602595 5.7e-13 56_[-1]_18 chrXIV:569604-570179 5.7e-13 36_[+1]_38 chrXII:1051740-1052428 5.7e-13 47_[+1]_27 chrV:550929-551737 5.7e-13 12_[+1]_62 chrIX:210488-210954 5.7e-13 30_[-1]_44 chrIV:667766-668258 5.7e-13 55_[+1]_19 chrIII:123418-123814 1.8e-12 21_[+1]_53 chrXV:853995-854447 1.6e-11 26_[+1]_48 chrXI:46487-47062 4.6e-11 21_[+1]_53 chrVIII:134041-134663 4.6e-11 53_[-1]_21 chrIV:802534-803015 4.6e-11 17_[+1]_57 chrIV:644968-645390 4.6e-11 34_[+1]_40 chrIII:168075-168625 4.6e-11 11_[+1]_63 chrXVI:581842-582441 7e-11 6_[-1]_68 chrXVI:571976-572600 7e-11 64_[-1]_10 chrXIII:480390-480915 7e-11 29_[+1]_45 chrXI:202829-203267 7e-11 36_[-1]_38 chrX:531561-532239 7e-11 11_[-1]_63 chrX:414711-415371 7e-11 10_[-1]_64 chrVII:930754-931265 7e-11 4_[+1]_70 chrVII:185283-186166 7e-11 50_[+1]_24 chrV:135187-135735 7e-11 24_[+1]_50 chrIV:1201476-1202119 7e-11 38_[-1]_36 chrIV:992574-993227 7e-11 15_[-1]_59 chrX:374202-374848 8e-11 41_[+1]_33 chrVII:405276-405818 8e-11 7_[-1]_67 chrII:405549-406322 8e-11 27_[-1]_47 chrV:130797-131464 9.1e-11 12_[+1]_62 chrVII:541581-542202 1.5e-10 43_[-1]_31 chrIX:370144-370777 1.5e-10 41_[-1]_33 chrII:644968-645472 1.5e-10 31_[-1]_43 chrIV:1075159-1075767 2e-10 69_[+1]_5 chrXV:663523-664135 2.2e-10 43_[+1]_31 chrXIII:586433-586909 2.2e-10 25_[+1]_49 chrXIII:372143-372773 2.2e-10 47_[+1]_27 chrXIII:320952-321350 2.2e-10 56_[+1]_18 chrXII:656646-657200 2.2e-10 71_[+1]_3 chrXI:379488-379961 2.2e-10 42_[-1]_32 chrVIII:146007-146459 2.2e-10 69_[+1]_5 chrVIII:84990-85602 2.2e-10 62_[+1]_12 chrVII:73632-74117 2.2e-10 15_[+1]_59 chrV:469255-469712 2.2e-10 60_[-1]_14 chrIV:410198-410731 2.2e-10 [-1]_74 chrXIV:567867-568530 2.5e-10 32_[-1]_42 chrXIV:546941-547418 2.5e-10 30_[-1]_44 chrVIII:388607-389237 2.5e-10 31_[+1]_43 chrXV:353864-354308 2.9e-10 15_[+1]_59 chrIX:325511-326133 2.9e-10 11_[-1]_63 chrIX:174765-175332 2.9e-10 68_[-1]_6 chrIV:434024-434579 2.9e-10 23_[+1]_51 chrII:266136-266740 2.9e-10 25_[-1]_49 chrIV:488460-489140 4.1e-10 57_[+1]_17 chrXIII:808008-808576 6.4e-10 14_[+1]_60 chrXV:438402-439085 8e-10 8_[-1]_66 chrXII:875211-875674 8e-10 42_[-1]_32 chrXI:578771-579347 8e-10 14_[-1]_60 chrX:538326-538811 8e-10 71_[-1]_3 chrXV:340054-340632 3.7e-09 16_[+1]_58 chrXV:487225-487709 4.9e-09 58_[-1]_16 chrXIV:632397-632858 4.9e-09 58_[-1]_16 chrXIV:102495-103072 4.9e-09 19_[-1]_55 chrXII:975678-976316 4.9e-09 46_[+1]_28 chrXI:74413-74965 4.9e-09 21_[-1]_53 chrXVI:55806-56556 5.3e-09 48_[+1]_26 chrIV:1175562-1176260 5.8e-09 3_[-1]_71 chrXVI:622241-622850 7.6e-09 55_[+1]_19 chrXVI:559988-560515 7.6e-09 7_[+1]_67 chrVIII:466722-467308 7.6e-09 59_[-1]_15 chrIV:1094940-1095776 7.6e-09 72_[+1]_2 chrXVI:743783-744898 1.5e-08 28_[-1]_46 chrVI:210444-210899 2e-08 8_[+1]_66 chrIV:946143-946625 2e-08 29_[-1]_45 chrVII:706957-707356 2.9e-08 12_[+1]_62 chrXIII:362847-363334 4.5e-08 58_[-1]_16 chrXI:313224-313692 4.5e-08 3_[+1]_71 chrVIII:62528-63138 4.5e-08 6_[-1]_68 chrVII:110401-110955 4.5e-08 7_[+1]_67 chrV:207088-207681 4.5e-08 57_[-1]_17 chrXV:709964-710579 5.2e-08 14_[-1]_60 chrX:517612-518092 5.2e-08 21_[+1]_53 chrXV:571673-572290 1.5e-07 61_[-1]_13 chrXII:426903-427470 1.5e-07 30_[-1]_44 chrX:355082-355922 1.5e-07 38_[-1]_36 chrIX:323994-324606 1.5e-07 63_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRATCGAACCSVKGAYCTYCNGRTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRATCGAACCSVKGAYCTYCNGRTT width=26 seqs=85 chrXVI:819164-819982 ( 43) GGGATCGAACCGCTGATCCCCGCGTT 1 chrXIV:602089-602595 ( 57) GGGATCGAACCGCTGATCCCCGCGTT 1 chrXIV:569604-570179 ( 37) GGGATCGAACCGCTGATCCCCGCGTT 1 chrXII:1051740-1052428 ( 48) GGGATCGAACCGCTGATCCCCGCGTT 1 chrV:550929-551737 ( 13) GGGATCGAACCGCTGATCCCCGCGTT 1 chrIX:210488-210954 ( 31) GGGATCGAACCGCTGATCCCCGCGTT 1 chrIV:667766-668258 ( 56) GGGATCGAACCGCTGATCCCCGCGTT 1 chrIII:123418-123814 ( 22) GGACTCGAACCCGGGACCTCCCGCAC 1 chrXV:853995-854447 ( 27) GGAATCGAACCGATGACCTCTTCCTT 1 chrXI:46487-47062 ( 22) GGAATTGAACCCACGATCCCCGCATT 1 chrVIII:134041-134663 ( 54) GGATTCGAACCGGGGTTGTCCGGATC 1 chrIV:802534-803015 ( 18) GGATTCGAACCGGGGTTGTCCGGATC 1 chrIV:644968-645390 ( 35) GGATTCGAACCGGGGTTGTCCGGATC 1 chrIII:168075-168625 ( 12) GGATTCGAACCGGGGTTGTCCGGATC 1 chrXVI:581842-582441 ( 7) GGGCTCGAACCCCTAACCTTATGATT 1 chrXVI:571976-572600 ( 65) GGAATCGAACCGGGGGCCCAACGATG 1 chrXIII:480390-480915 ( 30) GGGCTCGAACCCCTAACCTTATGATT 1 chrXI:202829-203267 ( 37) GGGCTCGAACCCCTAACCTTATGATT 1 chrX:531561-532239 ( 12) GGAATCGAACCGGGGGCCCAACGATG 1 chrX:414711-415371 ( 11) GGGCTCGAACCCCTAACCTTATGATT 1 chrVII:930754-931265 ( 5) GGAATCGAACCGGGGGCCCAACGATG 1 chrVII:185283-186166 ( 51) GGGCTCGAACCCCTAACCTTATGATT 1 chrV:135187-135735 ( 25) GGGCTCGAACCCCTAACCTTATGATT 1 chrIV:1201476-1202119 ( 39) GGGCTCGAACCCCTAACCTTATGATT 1 chrIV:992574-993227 ( 16) GGAATCGAACCGGGGGCCCAACGATG 1 chrX:374202-374848 ( 42) GGGGTCGAACCCATAATCTTCTGATT 1 chrVII:405276-405818 ( 8) GGGGTCGAACCCATAATCTTCTGATT 1 chrII:405549-406322 ( 28) GGGGTCGAACCCATAATCTTCTGATT 1 chrV:130797-131464 ( 13) GGATTCGAACCGGGGTTGTTCGGATC 1 chrVII:541581-542202 ( 44) GGAGTCGAACCCCGGTCTCCACGGTG 1 chrIX:370144-370777 ( 42) GGAGTCGAACCCCGGTCTCCACGGTG 1 chrII:644968-645472 ( 32) GGAGTCGAACCCCGGTCTCCACGGTG 1 chrIV:1075159-1075767 ( 70) AGGATCGAACTCGGGACCTTTGCCGT 1 chrXV:663523-664135 ( 44) AGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:586433-586909 ( 26) AGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:372143-372773 ( 48) AGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:320952-321350 ( 57) GGAATCGAACCGGAGACCTCTCCCAT 1 chrXII:656646-657200 ( 72) GGAATCGAACCGGAGACCTCTCCCAT 1 chrXI:379488-379961 ( 43) AGGATCGAACTGGGGACGTTCTGCGT 1 chrVIII:146007-146459 ( 70) GGAATCGAACCGGAGACCTCTCCCAT 1 chrVIII:84990-85602 ( 63) AGGATCGAACTGGGGACGTTCTGCGT 1 chrVII:73632-74117 ( 16) AGGATCGAACTGGGGACGTTCTGCGT 1 chrV:469255-469712 ( 61) AGGATCGAACTGGGGACGTTCTGCGT 1 chrIV:410198-410731 ( 1) GGAATCGAACCGGAGACCTCTCCCAT 1 chrXIV:567867-568530 ( 33) GGAATTGAACCCAGGGCCTCTCGCAT 1 chrXIV:546941-547418 ( 31) GGAATTGAACCCAGGGCCTCTCGCAT 1 chrVIII:388607-389237 ( 32) GGAATTGAACCCAGGGCCTCTCGCAT 1 chrXV:353864-354308 ( 16) GGATTTGAACCGATGATCTCCACATT 1 chrIX:325511-326133 ( 12) GGATTTGAACCGATGATCTCCACATT 1 chrIX:174765-175332 ( 69) GGATTTGAACCGATGATCTCCACATT 1 chrIV:434024-434579 ( 24) GGATTTGAACCGATGATCTCCACATT 1 chrII:266136-266740 ( 26) GGATTTGAACCGATGATCTCCACATT 1 chrIV:488460-489140 ( 58) AGGTTCGAACTCGGGATCTTCGCCGT 1 chrXIII:808008-808576 ( 15) GGATTCGAACTGGGGTTGTTCGGATC 1 chrXV:438402-439085 ( 9) GGGCTCGAACCCCTGACATTTCGGTA 1 chrXII:875211-875674 ( 43) GGGCTCGAACCCCTGACATTTCGGTA 1 chrXI:578771-579347 ( 15) GGGCTCGAACCCCTGACATTTCGGTA 1 chrX:538326-538811 ( 72) GGACTCGAACCCGCAGTCTTCTCCTT 1 chrXV:340054-340632 ( 17) GGACTTGAACCTGGAATCTTCTGGTT 1 chrXV:487225-487709 ( 59) AGGGTTGAACTCACGATCTTGCGATT 1 chrXIV:632397-632858 ( 59) AGGGTTGAACTCACGATCTTGCGATT 1 chrXIV:102495-103072 ( 20) AGGGTTGAACTCACGATCTTGCGATT 1 chrXII:975678-976316 ( 47) AGGGTTGAACTCACGATCTTGCGATT 1 chrXI:74413-74965 ( 22) AGGGTTGAACTCACGATCTTGCGATT 1 chrXVI:55806-56556 ( 49) GGAATTGAACCTGCAACCCTTCGATT 1 chrIV:1175562-1176260 ( 4) AGGTTCGAACTCTCGACCTTCAGATT 1 chrXVI:622241-622850 ( 56) TGGATCGAACACAGGACCTCCAGATA 1 chrXVI:559988-560515 ( 8) TGGATCGAACACAGGACCTCCAGATA 1 chrVIII:466722-467308 ( 60) AGAATTGAACTAGCGACCTTTGCATT 1 chrIV:1094940-1095776 ( 73) TGGATCGAACACAGGACCTCCAGATA 1 chrXVI:743783-744898 ( 29) AGAATTGAACTAACGACCTTTGCATT 1 chrVI:210444-210899 ( 9) CGAGTCGAACGCCCGATCTCAAGATT 1 chrIV:946143-946625 ( 30) CGAGTCGAACGCCCGATCTCAAGATT 1 chrVII:706957-707356 ( 13) AGGATCGAACTAAGGACCAACAGATT 1 chrXIII:362847-363334 ( 59) AGAATCGAACCAGGGTTTCATCGGCC 1 chrXI:313224-313692 ( 4) AGAATCGAACCAGGGTTTCATCGGCC 1 chrVIII:62528-63138 ( 7) AGAATCGAACCAGGGTTTCATCGGCC 1 chrVII:110401-110955 ( 8) AGAATCGAACCAGGGTTTCATCGGCC 1 chrV:207088-207681 ( 58) AGAATCGAACCAGGGTTTCATCGGCC 1 chrXV:709964-710579 ( 15) GGTTTCGATCCGAGGACATCAGGGTT 1 chrX:517612-518092 ( 22) GGTTTCGATCCGAGGACATCAGGGTT 1 chrXV:571673-572290 ( 62) GGAATTGAACCCCGATCTGGCACGCG 1 chrXII:426903-427470 ( 31) GGAATTGAACCCCGATCTGGCACGCG 1 chrX:355082-355922 ( 39) GGAATTGAACCCCGATCTGGCACGCG 1 chrIX:323994-324606 ( 64) GGAATTGAACCCCGATCTGGCACGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRATCGAACCSVKGAYCTYCNGRTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 41625 bayes= 7.54434 E= 8.5e-341 -23 -295 188 -317 -1305 -1305 246 -1305 70 -1305 133 -375 70 -25 -25 -85 -1305 -1305 -1305 165 -1305 203 -1305 -30 -1305 -1305 246 -1305 165 -1305 -1305 -1305 162 -1305 -1305 -375 -1305 246 -1305 -1305 -317 198 -295 -51 -176 133 122 -375 -11 75 109 -475 -276 -25 144 -6 -67 -1305 214 -1305 113 -1305 -95 -59 -1305 163 -1305 45 -243 183 -25 -117 -475 44 -195 113 -143 122 -195 37 -59 144 -163 -43 -76 91 37 -43 -1305 80 191 -1305 60 30 69 -1305 -176 -78 -78 113 -217 -37 -49 105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRATCGAACCSVKGAYCTYCNGRTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 85 E= 8.5e-341 0.270588 0.023529 0.670588 0.035294 0.000000 0.000000 1.000000 0.000000 0.517647 0.000000 0.458824 0.023529 0.517647 0.152941 0.152941 0.176471 0.000000 0.000000 0.000000 1.000000 0.000000 0.741176 0.000000 0.258824 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.976471 0.000000 0.000000 0.023529 0.000000 1.000000 0.000000 0.000000 0.035294 0.717647 0.023529 0.223529 0.094118 0.458824 0.423529 0.023529 0.294118 0.305882 0.388235 0.011765 0.047059 0.152941 0.494118 0.305882 0.200000 0.000000 0.800000 0.000000 0.694118 0.000000 0.094118 0.211765 0.000000 0.564706 0.000000 0.435294 0.058824 0.647059 0.152941 0.141176 0.011765 0.247059 0.047059 0.694118 0.117647 0.423529 0.047059 0.411765 0.211765 0.494118 0.058824 0.235294 0.188235 0.341176 0.235294 0.235294 0.000000 0.317647 0.682353 0.000000 0.482353 0.223529 0.294118 0.000000 0.094118 0.105882 0.105882 0.694118 0.070588 0.141176 0.129412 0.658824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRATCGAACCSVKGAYCTYCNGRTT MEME-1 regular expression -------------------------------------------------------------------------------- [GA]G[AG]AT[CT]GAAC[CT][CG][GCA][GT][GA][AT][CT]C[TC][CT][CTA][CGT][GC][AGC]TT -------------------------------------------------------------------------------- Time 298.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBYNYKTGGCSYAGTKGKTWRAGSS MEME-2 width = 26 sites = 94 llr = 1575 E-value = 1.6e-296 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBYNYKTGGCSYAGTKGKTWRAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1312:2:::1a1::::255421: pos.-specific C 133424::::754::12::1:12155 probability G 9631224:8a:31:9:5a5:132644 matrix T :144334a::324::93:56411111 bits 2.5 * 2.2 * * 2.0 * * * 1.7 * * * ** * Relative 1.5 * *** ** * Entropy 1.2 * **** *** * (24.2 bits) 1.0 ** **** *** * ** 0.7 ** ***** ****** *** 0.5 ** * ****** ****** *** 0.2 **** ***************** *** 0.0 -------------------------- Multilevel GGTCTCTTGGCCCAGTGGGTAAAGCC consensus CCTATG A TGT T TATGG GG sequence G C T C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCSYAGTKGKTWRAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrXVI:880158-880600 - 15 3.67e-13 ACAATATAAT GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:819164-819982 + 6 3.67e-13 AGAAT GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:602089-602595 + 20 3.67e-13 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:569604-570179 - 74 3.67e-13 T GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrVII:738769-739444 + 66 3.67e-13 GAAAAAAATA GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTA chrV:550929-551737 - 50 3.67e-13 ACAGATTACA GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:443009-443524 - 34 3.67e-13 ATTAAAATTT GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:856513-857278 + 57 6.75e-12 AACAAGATTC GGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXV:853995-854447 - 63 6.75e-12 ACAGTCATCA GGGCACATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXII:214726-215175 - 30 6.75e-12 ACGCGTTTTA GGGCACATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrX:197172-197626 - 11 6.75e-12 AATAATATTA GGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrV:311760-312435 - 23 6.75e-12 CAGAAATTCT GGGCACATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXIII:258952-259502 - 37 2.99e-11 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167698-168260 - 71 2.99e-11 ATAT GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrX:523807-524313 - 58 2.99e-11 AGAGATTAAA GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrVIII:132793-133384 - 44 2.99e-11 TATAATAAGT GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1305351-1305923 + 43 2.99e-11 TACAAATTAA GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:980808-981299 - 27 2.99e-11 TGTAAATTGA GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXIII:586433-586909 - 63 1.31e-10 AACTTACTAT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:420281-421024 - 34 1.31e-10 ACAAATAACA GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXII:687615-688223 - 38 1.31e-10 ATAAATAATA GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:379488-379961 + 6 1.31e-10 TAATA GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:307962-308443 - 40 1.31e-10 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:617670-618166 + 51 1.31e-10 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrX:378130-378585 + 53 1.31e-10 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823268-823674 + 61 1.31e-10 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:412127-412598 - 30 1.31e-10 TCAAAAAACT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:73632-74117 - 53 1.31e-10 TCAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:469255-469712 + 24 1.31e-10 AGAAATAATT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrIII:227725-228219 + 20 2.07e-10 AAATCGAAAT GGCACTATGGCCGAGTGGTTAAGGCG AGAGACTCGA chrXV:353864-354308 - 52 7.36e-10 ACGGTTTACT GCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIX:174765-175332 + 33 7.36e-10 ACAAGTACGA GCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIV:434024-434579 - 60 7.36e-10 CAAATCAGAA GCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIV:884163-884658 + 1 1.41e-09 . GCTCGTGTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXIII:480390-480915 - 66 1.60e-09 CAATAAGTA GCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXI:202829-203267 + 1 1.60e-09 . GCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:121896-122634 + 54 1.60e-09 CAACGAATTA GCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:226550-226956 - 32 1.60e-09 AGATTAAAAT GCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:135187-135735 - 61 1.60e-09 CAAGAAAAAA GCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1352331-1352772 - 12 1.60e-09 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201476-1202119 + 3 1.60e-09 TA GCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:204897-206239 + 3 2.60e-09 GT GGTTGTTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrIV:1461481-1462172 - 28 2.60e-09 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXI:83947-84452 + 59 3.30e-09 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424297-424771 - 6 3.30e-09 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGC GGCAG chrII:347353-347937 + 8 3.30e-09 TTTATAC GGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrII:9333-9910 + 12 3.30e-09 GAAAATTCGT GGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXV:487225-487709 + 22 4.66e-09 AACAAAGTTA GACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:632397-632858 + 22 4.66e-09 AATTTAAAGT GACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:374691-375087 + 30 1.38e-08 AGAAAAATAA GCGGACTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXV:464218-464710 + 36 1.52e-08 AAGTTAACAA GGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIII:195886-196455 - 25 1.52e-08 AAGTTCACAA GGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrVI:101095-101621 + 68 1.52e-08 ACAATAATTC GGGCGTGTGGTCTAGTGGTATGATTC TCGCTTT chrXVI:860107-860650 + 51 1.69e-08 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:571976-572600 + 31 1.69e-08 ACAATACTTC GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226468-226903 - 21 1.69e-08 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIII:183774-184200 - 6 1.69e-08 AATAAAGATC GCGCAAGTGGTTTAGTGGTAAAATCC AACGT chrVII:930754-931265 - 39 1.69e-08 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:161960-162472 + 62 1.69e-08 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:83278-83804 + 57 1.69e-08 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:559988-560515 - 63 3.34e-08 TAGAAATTGA GCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:352082-352508 + 35 3.34e-08 ATGAATATAA GCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:358278-358802 - 54 3.34e-08 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrII:326520-327238 - 11 4.43e-08 TCGAGTTCCG GGTCCAATGGTCCAGTGGTTCAAGAC GTCGCCTTTA chrIV:359315-359885 + 27 9.02e-08 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXI:46487-47062 - 57 9.82e-08 AAATTACTCA GCCCTTTTGGCCAAGTGGTAAGGCAT CGCACTCGTA chrXIII:923166-924361 - 59 1.26e-07 TCATTATGCA CGGCACTTGCCTCAGTGGTCTATACC CTGTTCCATT chrXV:593994-594860 - 23 1.37e-07 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTAGAATT TATGCTTCCC chrXIII:808008-808576 - 50 1.37e-07 AGAAGAAAAA GGTCCTATAGTGTAGTGGTTATCACT TTCGGTTCTG chrVIII:466722-467308 + 25 1.37e-07 TGTATTTTTA GCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVIII:134041-134663 + 19 1.37e-07 AGTAAGTTCC GGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:802534-803015 - 53 1.37e-07 ATGAATTGTC GGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:644968-645390 - 70 1.37e-07 GTTAC GGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIII:168075-168625 - 47 1.37e-07 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXV:976135-976707 + 50 1.49e-07 TATTTTGTGC GCTTCAGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrVII:706957-707356 - 48 1.90e-07 AGAAAATCAA GCTCGTATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrII:642893-643255 - 29 1.90e-07 GTAATAGAAA GCTCGTATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXV:340054-340632 - 53 2.40e-07 TCAAGATCTG TTCCTCGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXI:0-1113 + 43 2.59e-07 TCATTATTCA CGGCACTTGCCTCAGCGGTTTATACC CTGTGCAATT chrV:130797-131464 - 48 3.25e-07 ATAATTAAGA GGTTTTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIII:123418-123814 - 57 5.04e-07 TTTCAAAGGA GGGCGTGTGGTCTAGAGGTATGATTC TCGCTTAGGG chrIV:1524076-1525655 - 43 6.22e-07 TCATTATACA CGGCACTTGCCTCAGCGGTCTATACC CTGTGCCATT chrI:229118-230194 - 40 6.22e-07 TCACCATACA CGGCACTTGCCTCAGCGGTCTATACC CTGTCCCATT chrX:538326-538811 + 37 6.67e-07 AACCAAGTTG GTTCCGTTGGCGTAATGGTAACGCGT CTCCCTCCTA chrXVI:338649-339198 - 21 7.14e-07 ATGATTTAGC AGCGCCGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrX:517612-518092 - 57 7.14e-07 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrV:99895-100359 + 56 7.14e-07 AAGTTGGCTA AGCGCCGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrXV:287958-288420 + 53 7.64e-07 AAAATAGCTT CTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXIII:837645-838258 + 27 7.64e-07 AGTTAATTGA CTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXIII:168572-169058 + 30 7.64e-07 AAAATAGTCA CTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:210444-210899 - 61 7.64e-07 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:167256-167664 + 27 7.64e-07 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVII:828253-829312 - 37 8.18e-07 ACAAACAGTA GCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXII:489294-489582 + 31 3.33e-06 GTAAGAGCCT GACCGAGTAGTGTAGTGGGTGACCAT ACGCGAAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCSYAGTKGKTWRAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:880158-880600 3.7e-13 14_[-2]_60 chrXVI:819164-819982 3.7e-13 5_[+2]_69 chrXIV:602089-602595 3.7e-13 19_[+2]_55 chrXIV:569604-570179 3.7e-13 73_[-2]_1 chrVII:738769-739444 3.7e-13 65_[+2]_9 chrV:550929-551737 3.7e-13 49_[-2]_25 chrV:443009-443524 3.7e-13 33_[-2]_41 chrXVI:856513-857278 6.7e-12 56_[+2]_18 chrXV:853995-854447 6.7e-12 62_[-2]_12 chrXII:214726-215175 6.7e-12 29_[-2]_45 chrX:197172-197626 6.7e-12 10_[-2]_64 chrV:311760-312435 6.7e-12 22_[-2]_52 chrXIII:258952-259502 3e-11 36_[-2]_38 chrXII:167698-168260 3e-11 70_[-2]_4 chrX:523807-524313 3e-11 57_[-2]_17 chrVIII:132793-133384 3e-11 43_[-2]_31 chrIV:1305351-1305923 3e-11 42_[+2]_32 chrIV:980808-981299 3e-11 26_[-2]_48 chrXIII:586433-586909 1.3e-10 62_[-2]_12 chrXIII:420281-421024 1.3e-10 33_[-2]_41 chrXII:687615-688223 1.3e-10 37_[-2]_37 chrXI:379488-379961 1.3e-10 5_[+2]_69 chrXI:307962-308443 1.3e-10 39_[-2]_35 chrX:617670-618166 1.3e-10 50_[+2]_24 chrX:378130-378585 1.3e-10 52_[+2]_22 chrVII:823268-823674 1.3e-10 60_[+2]_14 chrVII:412127-412598 1.3e-10 29_[-2]_45 chrVII:73632-74117 1.3e-10 52_[-2]_22 chrV:469255-469712 1.3e-10 23_[+2]_51 chrIII:227725-228219 2.1e-10 19_[+2]_55 chrXV:353864-354308 7.4e-10 51_[-2]_23 chrIX:174765-175332 7.4e-10 32_[+2]_42 chrIV:434024-434579 7.4e-10 59_[-2]_15 chrIV:884163-884658 1.4e-09 [+2]_74 chrXIII:480390-480915 1.6e-09 65_[-2]_9 chrXI:202829-203267 1.6e-09 [+2]_74 chrVII:121896-122634 1.6e-09 53_[+2]_21 chrVI:226550-226956 1.6e-09 31_[-2]_43 chrV:135187-135735 1.6e-09 60_[-2]_14 chrIV:1352331-1352772 1.6e-09 11_[-2]_63 chrIV:1201476-1202119 1.6e-09 2_[+2]_72 chrVII:204897-206239 2.6e-09 2_[+2]_72 chrIV:1461481-1462172 2.6e-09 27_[-2]_47 chrXI:83947-84452 3.3e-09 58_[+2]_16 chrX:424297-424771 3.3e-09 5_[-2]_69 chrII:347353-347937 3.3e-09 7_[+2]_67 chrII:9333-9910 3.3e-09 11_[+2]_63 chrXV:487225-487709 4.7e-09 21_[+2]_53 chrXIV:632397-632858 4.7e-09 21_[+2]_53 chrXIV:374691-375087 1.4e-08 29_[+2]_45 chrXV:464218-464710 1.5e-08 35_[+2]_39 chrXIII:195886-196455 1.5e-08 24_[-2]_50 chrVI:101095-101621 1.5e-08 67_[+2]_7 chrXVI:860107-860650 1.7e-08 50_[+2]_24 chrXVI:571976-572600 1.7e-08 30_[+2]_44 chrXV:226468-226903 1.7e-08 20_[-2]_54 chrXIII:183774-184200 1.7e-08 5_[-2]_69 chrVII:930754-931265 1.7e-08 38_[-2]_36 chrVI:161960-162472 1.7e-08 61_[+2]_13 chrIV:83278-83804 1.7e-08 56_[+2]_18 chrXVI:559988-560515 3.3e-08 62_[-2]_12 chrXIII:352082-352508 3.3e-08 34_[+2]_40 chrVIII:358278-358802 3.3e-08 53_[-2]_21 chrII:326520-327238 4.4e-08 10_[-2]_64 chrIV:359315-359885 9e-08 26_[+2]_48 chrXI:46487-47062 9.8e-08 56_[-2]_18 chrXIII:923166-924361 1.3e-07 58_[-2]_16 chrXV:593994-594860 1.4e-07 22_[-2]_52 chrXIII:808008-808576 1.4e-07 49_[-2]_25 chrVIII:466722-467308 1.4e-07 24_[+2]_50 chrVIII:134041-134663 1.4e-07 18_[+2]_56 chrIV:802534-803015 1.4e-07 52_[-2]_22 chrIV:644968-645390 1.4e-07 69_[-2]_5 chrIII:168075-168625 1.4e-07 46_[-2]_28 chrXV:976135-976707 1.5e-07 49_[+2]_25 chrVII:706957-707356 1.9e-07 47_[-2]_27 chrII:642893-643255 1.9e-07 28_[-2]_46 chrXV:340054-340632 2.4e-07 52_[-2]_22 chrXI:0-1113 2.6e-07 42_[+2]_32 chrV:130797-131464 3.3e-07 47_[-2]_27 chrIII:123418-123814 5e-07 56_[-2]_18 chrIV:1524076-1525655 6.2e-07 42_[-2]_32 chrI:229118-230194 6.2e-07 39_[-2]_35 chrX:538326-538811 6.7e-07 36_[+2]_38 chrXVI:338649-339198 7.1e-07 20_[-2]_54 chrX:517612-518092 7.1e-07 56_[-2]_18 chrV:99895-100359 7.1e-07 55_[+2]_19 chrXV:287958-288420 7.6e-07 52_[+2]_22 chrXIII:837645-838258 7.6e-07 26_[+2]_48 chrXIII:168572-169058 7.6e-07 29_[+2]_45 chrVI:210444-210899 7.6e-07 60_[-2]_14 chrVI:167256-167664 7.6e-07 26_[+2]_48 chrVII:828253-829312 8.2e-07 36_[-2]_38 chrXII:489294-489582 3.3e-06 30_[+2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCSYAGTKGKTWRAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBYNYKTGGCSYAGTKGKTWRAGSS width=26 seqs=94 chrXVI:880158-880600 ( 15) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXVI:819164-819982 ( 6) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXIV:602089-602595 ( 20) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXIV:569604-570179 ( 74) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrVII:738769-739444 ( 66) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrV:550929-551737 ( 50) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrV:443009-443524 ( 34) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXVI:856513-857278 ( 57) GGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrXV:853995-854447 ( 63) GGGCACATGGCGCAGTTGGTAGCGCG 1 chrXII:214726-215175 ( 30) GGGCACATGGCGCAGTTGGTAGCGCG 1 chrX:197172-197626 ( 11) GGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrV:311760-312435 ( 23) GGGCACATGGCGCAGTTGGTAGCGCG 1 chrXIII:258952-259502 ( 37) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrXII:167698-168260 ( 71) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrX:523807-524313 ( 58) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrVIII:132793-133384 ( 44) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrIV:1305351-1305923 ( 43) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrIV:980808-981299 ( 27) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrXIII:586433-586909 ( 63) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXIII:420281-421024 ( 34) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXII:687615-688223 ( 38) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXI:379488-379961 ( 6) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXI:307962-308443 ( 40) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrX:617670-618166 ( 51) GGGAGTTTGGCCGAGTGGTTTAAGGC 1 chrX:378130-378585 ( 53) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrVII:823268-823674 ( 61) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrVII:412127-412598 ( 30) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrVII:73632-74117 ( 53) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrV:469255-469712 ( 24) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrIII:227725-228219 ( 20) GGCACTATGGCCGAGTGGTTAAGGCG 1 chrXV:353864-354308 ( 52) GCTTCTATGGCCAAGTTGGTAAGGCG 1 chrIX:174765-175332 ( 33) GCTTCTATGGCCAAGTTGGTAAGGCG 1 chrIV:434024-434579 ( 60) GCTTCTATGGCCAAGTTGGTAAGGCG 1 chrIV:884163-884658 ( 1) GCTCGTGTAGCTCAGTGGTTAGAGCT 1 chrXIII:480390-480915 ( 66) GCCTTGTTGGCGCAATCGGTAGCGCG 1 chrXI:202829-203267 ( 1) GCCTTGTTGGCGCAATCGGTAGCGCG 1 chrVII:121896-122634 ( 54) GCCTTGTTGGCGCAATCGGTAGCGCG 1 chrVI:226550-226956 ( 32) GCCTTGTTGGCGCAATCGGTAGCGCG 1 chrV:135187-135735 ( 61) GCCTTGTTGGCGCAATCGGTAGCGCG 1 chrIV:1352331-1352772 ( 12) GCCTTGTTGGCGCAATCGGTAGCGCG 1 chrIV:1201476-1202119 ( 3) GCCTTGTTGGCGCAATCGGTAGCGCG 1 chrVII:204897-206239 ( 3) GGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrIV:1461481-1462172 ( 28) GGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrXI:83947-84452 ( 59) GGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrX:424297-424771 ( 6) GGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrII:347353-347937 ( 8) GGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrII:9333-9910 ( 12) GGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrXV:487225-487709 ( 22) GACTCCATGGCCAAGTTGGTTAAGGC 1 chrXIV:632397-632858 ( 22) GACTCCATGGCCAAGTTGGTTAAGGC 1 chrXIV:374691-375087 ( 30) GCGGACTTAGCTCAGTTGGGAGAGCG 1 chrXV:464218-464710 ( 36) GGGCGTGTGGTCTAGTGGTATGATTC 1 chrXIII:195886-196455 ( 25) GGGCGTGTGGTCTAGTGGTATGATTC 1 chrVI:101095-101621 ( 68) GGGCGTGTGGTCTAGTGGTATGATTC 1 chrXVI:860107-860650 ( 51) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXVI:571976-572600 ( 31) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXV:226468-226903 ( 21) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXIII:183774-184200 ( 6) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrVII:930754-931265 ( 39) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrVI:161960-162472 ( 62) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrIV:83278-83804 ( 57) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXVI:559988-560515 ( 63) GCGGATTTAGCTCAGTTGGGAGAGCG 1 chrXIII:352082-352508 ( 35) GCGGATTTAGCTCAGTTGGGAGAGCG 1 chrVIII:358278-358802 ( 54) GCGGATTTAGCTCAGTTGGGAGAGCG 1 chrII:326520-327238 ( 11) GGTCCAATGGTCCAGTGGTTCAAGAC 1 chrIV:359315-359885 ( 27) TCCTTGTTAGCTCAGTTGGTAGAGCG 1 chrXI:46487-47062 ( 57) GCCCTTTTGGCCAAGTGGTAAGGCAT 1 chrXIII:923166-924361 ( 59) CGGCACTTGCCTCAGTGGTCTATACC 1 chrXV:593994-594860 ( 23) GCGCAAGTGGTTCAGTGGTTAGAATT 1 chrXIII:808008-808576 ( 50) GGTCCTATAGTGTAGTGGTTATCACT 1 chrVIII:466722-467308 ( 25) GCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrVIII:134041-134663 ( 19) GGTCCTATAGTGTAGTGGTTATCACT 1 chrIV:802534-803015 ( 53) GGTCCTATAGTGTAGTGGTTATCACT 1 chrIV:644968-645390 ( 70) GGTCCTATAGTGTAGTGGTTATCACT 1 chrIII:168075-168625 ( 47) GGTCCTATAGTGTAGTGGTTATCACT 1 chrXV:976135-976707 ( 50) GCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrVII:706957-707356 ( 48) GCTCGTATGGCGCAGTGGTAGCGCAG 1 chrII:642893-643255 ( 29) GCTCGTATGGCGCAGTGGTAGCGCAG 1 chrXV:340054-340632 ( 53) TTCCTCGTGGCCCAATGGTCACGGCG 1 chrXI:0-1113 ( 43) CGGCACTTGCCTCAGCGGTTTATACC 1 chrV:130797-131464 ( 48) GGTTTTATAGTGTAGTGGTTATCACT 1 chrIII:123418-123814 ( 57) GGGCGTGTGGTCTAGAGGTATGATTC 1 chrIV:1524076-1525655 ( 43) CGGCACTTGCCTCAGCGGTCTATACC 1 chrI:229118-230194 ( 40) CGGCACTTGCCTCAGCGGTCTATACC 1 chrX:538326-538811 ( 37) GTTCCGTTGGCGTAATGGTAACGCGT 1 chrXVI:338649-339198 ( 21) AGCGCCGTGGCGCAGTGGAAGCGCGC 1 chrX:517612-518092 ( 57) AGCGCCGTGGCGCAGTGGAAGCGCGC 1 chrV:99895-100359 ( 56) AGCGCCGTGGCGCAGTGGAAGCGCGC 1 chrXV:287958-288420 ( 53) CTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrXIII:837645-838258 ( 27) CTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrXIII:168572-169058 ( 30) CTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrVI:210444-210899 ( 61) CTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrVI:167256-167664 ( 27) CTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrVII:828253-829312 ( 37) GCTCGCGTGGCGTAATGGCAACGCGT 1 chrXII:489294-489582 ( 31) GACCGAGTAGTGTAGTGGGTGACCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCSYAGTKGKTWRAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 41625 bayes= 9.87114 E= 1.6e-296 -332 -93 223 -390 -332 81 166 -209 -290 76 60 23 -190 130 -64 14 -26 43 7 -9 -144 119 7 -20 -73 -1320 111 38 -1320 -1320 -1320 165 -58 -1320 211 -1320 -1320 -210 240 -1320 -1320 190 -1320 1 -1320 149 60 -58 -144 107 -29 14 165 -1320 -1320 -1320 -158 -1320 230 -1320 -490 -177 -1320 156 -490 15 152 -26 -1320 -1320 246 -1320 -332 -409 143 56 -51 -77 -210 98 65 -409 -129 38 74 -110 55 -144 46 15 23 -109 -90 -77 174 -144 -258 146 111 -258 -1320 140 107 -120 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCSYAGTKGKTWRAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 94 E= 1.6e-296 0.031915 0.095745 0.851064 0.021277 0.031915 0.319149 0.574468 0.074468 0.042553 0.308511 0.276596 0.372340 0.085106 0.446809 0.117021 0.351064 0.265957 0.244681 0.191489 0.297872 0.117021 0.414894 0.191489 0.276596 0.191489 0.000000 0.393617 0.414894 0.000000 0.000000 0.000000 1.000000 0.212766 0.000000 0.787234 0.000000 0.000000 0.042553 0.957447 0.000000 0.000000 0.680851 0.000000 0.319149 0.000000 0.510638 0.276596 0.212766 0.117021 0.382979 0.148936 0.351064 1.000000 0.000000 0.000000 0.000000 0.106383 0.000000 0.893617 0.000000 0.010638 0.053191 0.000000 0.936170 0.010638 0.202128 0.521277 0.265957 0.000000 0.000000 1.000000 0.000000 0.031915 0.010638 0.489362 0.468085 0.223404 0.106383 0.042553 0.627660 0.500000 0.010638 0.074468 0.414894 0.531915 0.085106 0.265957 0.117021 0.436170 0.202128 0.212766 0.148936 0.170213 0.106383 0.606383 0.117021 0.053191 0.500000 0.393617 0.053191 0.000000 0.478723 0.382979 0.138298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYKTGGCSYAGTKGKTWRAGSS MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][TCG][CT][TAC][CT][TG]T[GA]G[CT][CGT][CT]AGT[GTC]G[GT][TA][AT][AG][AGC]G[CG][CG] -------------------------------------------------------------------------------- Time 572.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TGDRTGTGRTGTRTGGGTG MEME-3 width = 19 sites = 47 llr = 667 E-value = 1.5e-071 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGDRTGTGRTGTRTGGGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2133:1123:::5:::1:: pos.-specific C :21:112::::31::::11 probability G 2535271771a:41aa9:8 matrix T 52226151:9:719:::91 bits 2.5 * 2.2 * ** 2.0 * *** 1.7 * *** Relative 1.5 * *** * Entropy 1.2 *** ****** (20.5 bits) 1.0 ***** ****** 0.7 * ***** ****** 0.5 * *** ************ 0.2 ******************* 0.0 ------------------- Multilevel TGAGTGTGGTGTATGGGTG consensus A GA C A CG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDRTGTGRTGTRTGGGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrXIII:5328-5744 - 58 4.34e-13 TGTGTGGGTG TGGGTGTGGTGTGTGGGTG TGGGTGTATA chrXII:5465-5915 - 27 4.34e-13 GGGTGTGGTG TGGGTGTGGTGTGTGGGTG TGGTGTATAT chrVIII:562305-562580 + 67 4.34e-13 GTGAAAAGTG TGGGTGTGGTGTGTGGGTG TGGGTGTGTG chrIV:28-347 - 1 1.78e-10 TGTTAGGGGT AGTGTGTGGTGTGTGGGTG chrX:545469-545666 + 33 1.08e-09 TTGCCACGTG CGAGTGCGGTGCATGGGTG GCTGTCTTTT chrVIII:175032-175432 - 61 1.08e-09 GCTAGAAGAC TGGGTGTGATGCGGGGGTG GGGGTGTGCA chrXIII:302852-303141 + 12 1.76e-09 AAAAAATCCA GGGGTGTGGGGTGTGGGCG CCCATATGCG chrVII:371224-371491 - 49 1.76e-09 CGCGTGCGGC GGTGTGAGGTGCATGGGTG CCGGTATTTT chrVI:95434-95859 + 33 2.04e-09 TCTTCTATAC GCAGTCCGGTGTGTGGGTG CATGACTGAT chrXII:1012157-1012395 - 13 2.37e-09 TGCGCACATT TGCGTGTGGTGCATGGGTT CTATTCCTCA chrV:6145-6644 - 6 2.37e-09 CAAGTGAAGG TGAGCATGGTGTGTGGGTG TGGGT chrVII:856739-857000 + 38 3.69e-09 GCTAGTTCCA TTGGTGCGGTGTATGGGCG GGTACCCTCA chrIV:538971-539201 - 70 3.69e-09 GTAGAAGGAT TGAATGAGGGGTGTGGGTG TGATAATTCA chrIV:525072-525366 + 27 4.27e-09 AGGAATATTT TTGGTGTAGTGTATGGGTG TTGTGAAAAT chrXV:968097-968428 + 50 5.64e-09 GGATCTCAAA AGCGTGGGGTGCGTGGGCG TGCGCTGCTC chrIV:125305-125655 + 41 6.45e-09 TTGTAATAAT TTGGTGCGGTGTATGGGTT CAAGTTCCCA chrXIV:783713-784321 + 63 1.10e-08 TAGGGTAGTG TTAGGGTAGTGTGTGGGTG TGGTGTGTGT chrXII:903377-903703 - 33 1.10e-08 TGGGTCCTAA TGCATGTGGTGCATGGGTC CAATGCTTCT chrXV:216239-216682 - 66 1.41e-08 CACGGTTACC TGGGGGCGGTGCCTGGGTT GAGGAAGGCG chrIII:1-679 - 23 1.41e-08 GTGTGGTGTG GGTGTGGTGTGTGTGGGTG TGGGTGTGTG chrXV:167929-168483 - 52 2.30e-08 AACCTCGTTC TCAATGTGATGTGTGGGCG GCTTTAAACA chrIV:1062793-1063125 + 41 2.30e-08 ATTTCCTGCC ATCATGCGATGTGTGGGTG CTATTTATTT chrIV:411219-411689 - 32 2.92e-08 GGGGACTTTG GGTGCCCGGGGTGTGGGTG TTTGATTTGT chrII:181292-181675 - 63 4.59e-08 TGTAATGTAT TCAATGTAATGTATGGGTG CTTTGTAAAG chrXII:1028167-1028603 - 64 1.60e-07 TATGACCCAT ACATTTTGGTGCATGGGTG ATATTTTGTC chrXVI:627376-627655 + 71 1.76e-07 GCTCGCCCGG TCGTTTGGATGCGTGGGTG GTATAGTTTC chrX:160032-160311 - 54 1.94e-07 GTCACGTGCA ACATTATGGGGTATGGGTG TGTCACACAT chrXVI:121405-121790 - 15 2.13e-07 ATTGAAAAAT TAGATGTGGTGTTTGGGTT TATTCCATTT chrXII:370583-370958 + 59 2.13e-07 TTTTGGACTA ACCGTGTGGTTCATGGGTG GGCGAAGTGC chrXVI:699891-700694 - 19 4.39e-07 GGGGAAATTT AGTATGCTGTGCTTGGGTG TTTTGAAGTG chrVIII:505798-506226 + 32 4.39e-07 ACAAAATGTC TGGGTGAAATGTATGGATG CATAATTGTC chrI:81818-82353 - 51 7.27e-07 GCACCTCCGC TAGATGAGGTGCAGGGGTC TATCAAGAAC chrX:90021-90449 - 77 7.89e-07 AAAAA ACAAGGCCATGTATGGGTG AGAATGTCCA chrXI:382187-382480 - 23 1.17e-06 GGTTTTGTGT TGGGTGTGATGTCCGGATG CAACAGCAGC chrXV:1025670-1026123 - 31 1.26e-06 GATGTCCAAT TACACGTGATGAATGGGTG TTCAGCATAT chrXII:645833-646069 - 40 1.36e-06 TTCGCCCGAC GGGTGAATGGGTGTGGGTG GAACGAGGAT chrIV:358089-358465 + 15 1.47e-06 TTGTTTCCTT GTCAGATAATGTATGGGTG GTGTGTACAC chrXIII:145880-146621 + 53 2.12e-06 CAGTGTGGAA TCAAGGTGGTGCCGGTGTG AAGCCGCCTC chrVII:1000332-1000589 - 49 2.12e-06 GGTCGTCCAA ATATGCAGGTGTTTGGGTG CTATCCTAGT chrXV:161103-161414 + 31 3.00e-06 GGTATTATAG GAATCCCGATGTATGGGTT TGGTTGCCAG chrXVI:188523-189106 - 27 4.18e-06 TGGTAACCAT AGTAACCGATGCATGGGTT TTAAAAGTCA chrXV:505083-505501 - 53 4.46e-06 GGTGTGATAA GGTTCATTGTGTATGGGTT TGAAATGAAT chrXV:79746-80139 + 27 4.75e-06 TGCAATGAAG AGATGAGGAGGCATGGGTC ACTTATTTAA chrIX:254235-254546 + 11 5.39e-06 GAAGGCGCGG CAATTAGAATGTGTGGGTG CGGAAGCTCG chrXII:234609-234822 + 31 5.73e-06 AAGCTACGTT TTTAAGGAAGGTATGGGTG CAGTGTGCTT chrIX:1-208 - 11 6.89e-06 GTAGATGAGA GAGAGTTGGTGTGGGTGTG GTGTGTGGGT chrIV:1355680-1356041 + 46 1.16e-05 GGGTGTAATT TTAACCGAATGTATGGATG TTACAGGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDRTGTGRTGTRTGGGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:5328-5744 4.3e-13 57_[-3]_24 chrXII:5465-5915 4.3e-13 26_[-3]_55 chrVIII:562305-562580 4.3e-13 66_[+3]_15 chrIV:28-347 1.8e-10 [-3]_81 chrX:545469-545666 1.1e-09 32_[+3]_49 chrVIII:175032-175432 1.1e-09 60_[-3]_21 chrXIII:302852-303141 1.8e-09 11_[+3]_70 chrVII:371224-371491 1.8e-09 48_[-3]_33 chrVI:95434-95859 2e-09 32_[+3]_49 chrXII:1012157-1012395 2.4e-09 12_[-3]_69 chrV:6145-6644 2.4e-09 5_[-3]_76 chrVII:856739-857000 3.7e-09 37_[+3]_44 chrIV:538971-539201 3.7e-09 69_[-3]_12 chrIV:525072-525366 4.3e-09 26_[+3]_55 chrXV:968097-968428 5.6e-09 49_[+3]_32 chrIV:125305-125655 6.5e-09 40_[+3]_41 chrXIV:783713-784321 1.1e-08 62_[+3]_19 chrXII:903377-903703 1.1e-08 32_[-3]_49 chrXV:216239-216682 1.4e-08 65_[-3]_16 chrIII:1-679 1.4e-08 22_[-3]_59 chrXV:167929-168483 2.3e-08 51_[-3]_30 chrIV:1062793-1063125 2.3e-08 40_[+3]_41 chrIV:411219-411689 2.9e-08 31_[-3]_50 chrII:181292-181675 4.6e-08 62_[-3]_19 chrXII:1028167-1028603 1.6e-07 63_[-3]_18 chrXVI:627376-627655 1.8e-07 70_[+3]_11 chrX:160032-160311 1.9e-07 53_[-3]_28 chrXVI:121405-121790 2.1e-07 14_[-3]_67 chrXII:370583-370958 2.1e-07 58_[+3]_23 chrXVI:699891-700694 4.4e-07 18_[-3]_63 chrVIII:505798-506226 4.4e-07 31_[+3]_50 chrI:81818-82353 7.3e-07 50_[-3]_31 chrX:90021-90449 7.9e-07 76_[-3]_5 chrXI:382187-382480 1.2e-06 22_[-3]_59 chrXV:1025670-1026123 1.3e-06 30_[-3]_51 chrXII:645833-646069 1.4e-06 39_[-3]_42 chrIV:358089-358465 1.5e-06 14_[+3]_67 chrXIII:145880-146621 2.1e-06 52_[+3]_29 chrVII:1000332-1000589 2.1e-06 48_[-3]_33 chrXV:161103-161414 3e-06 30_[+3]_51 chrXVI:188523-189106 4.2e-06 26_[-3]_55 chrXV:505083-505501 4.5e-06 52_[-3]_29 chrXV:79746-80139 4.8e-06 26_[+3]_55 chrIX:254235-254546 5.4e-06 10_[+3]_71 chrXII:234609-234822 5.7e-06 30_[+3]_51 chrIX:1-208 6.9e-06 10_[-3]_71 chrIV:1355680-1356041 1.2e-05 45_[+3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDRTGTGRTGTRTGGGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGDRTGTGRTGTRTGGGTG width=19 seqs=47 chrXIII:5328-5744 ( 58) TGGGTGTGGTGTGTGGGTG 1 chrXII:5465-5915 ( 27) TGGGTGTGGTGTGTGGGTG 1 chrVIII:562305-562580 ( 67) TGGGTGTGGTGTGTGGGTG 1 chrIV:28-347 ( 1) AGTGTGTGGTGTGTGGGTG 1 chrX:545469-545666 ( 33) CGAGTGCGGTGCATGGGTG 1 chrVIII:175032-175432 ( 61) TGGGTGTGATGCGGGGGTG 1 chrXIII:302852-303141 ( 12) GGGGTGTGGGGTGTGGGCG 1 chrVII:371224-371491 ( 49) GGTGTGAGGTGCATGGGTG 1 chrVI:95434-95859 ( 33) GCAGTCCGGTGTGTGGGTG 1 chrXII:1012157-1012395 ( 13) TGCGTGTGGTGCATGGGTT 1 chrV:6145-6644 ( 6) TGAGCATGGTGTGTGGGTG 1 chrVII:856739-857000 ( 38) TTGGTGCGGTGTATGGGCG 1 chrIV:538971-539201 ( 70) TGAATGAGGGGTGTGGGTG 1 chrIV:525072-525366 ( 27) TTGGTGTAGTGTATGGGTG 1 chrXV:968097-968428 ( 50) AGCGTGGGGTGCGTGGGCG 1 chrIV:125305-125655 ( 41) TTGGTGCGGTGTATGGGTT 1 chrXIV:783713-784321 ( 63) TTAGGGTAGTGTGTGGGTG 1 chrXII:903377-903703 ( 33) TGCATGTGGTGCATGGGTC 1 chrXV:216239-216682 ( 66) TGGGGGCGGTGCCTGGGTT 1 chrIII:1-679 ( 23) GGTGTGGTGTGTGTGGGTG 1 chrXV:167929-168483 ( 52) TCAATGTGATGTGTGGGCG 1 chrIV:1062793-1063125 ( 41) ATCATGCGATGTGTGGGTG 1 chrIV:411219-411689 ( 32) GGTGCCCGGGGTGTGGGTG 1 chrII:181292-181675 ( 63) TCAATGTAATGTATGGGTG 1 chrXII:1028167-1028603 ( 64) ACATTTTGGTGCATGGGTG 1 chrXVI:627376-627655 ( 71) TCGTTTGGATGCGTGGGTG 1 chrX:160032-160311 ( 54) ACATTATGGGGTATGGGTG 1 chrXVI:121405-121790 ( 15) TAGATGTGGTGTTTGGGTT 1 chrXII:370583-370958 ( 59) ACCGTGTGGTTCATGGGTG 1 chrXVI:699891-700694 ( 19) AGTATGCTGTGCTTGGGTG 1 chrVIII:505798-506226 ( 32) TGGGTGAAATGTATGGATG 1 chrI:81818-82353 ( 51) TAGATGAGGTGCAGGGGTC 1 chrX:90021-90449 ( 77) ACAAGGCCATGTATGGGTG 1 chrXI:382187-382480 ( 23) TGGGTGTGATGTCCGGATG 1 chrXV:1025670-1026123 ( 31) TACACGTGATGAATGGGTG 1 chrXII:645833-646069 ( 40) GGGTGAATGGGTGTGGGTG 1 chrIV:358089-358465 ( 15) GTCAGATAATGTATGGGTG 1 chrXIII:145880-146621 ( 53) TCAAGGTGGTGCCGGTGTG 1 chrVII:1000332-1000589 ( 49) ATATGCAGGTGTTTGGGTG 1 chrXV:161103-161414 ( 31) GAATCCCGATGTATGGGTT 1 chrXVI:188523-189106 ( 27) AGTAACCGATGCATGGGTT 1 chrXV:505083-505501 ( 53) GGTTCATTGTGTATGGGTT 1 chrXV:79746-80139 ( 27) AGATGAGGAGGCATGGGTC 1 chrIX:254235-254546 ( 11) CAATTAGAATGTGTGGGTG 1 chrXII:234609-234822 ( 31) TTTAAGGAAGGTATGGGTG 1 chrIX:1-208 ( 11) GAGAGTTGGTGTGGGTGTG 1 chrIV:1355680-1356041 ( 46) TTAACCGAATGTATGGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDRTGTGRTGTRTGGGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 45510 bayes= 10.3435 E= 1.5e-071 -44 -210 23 68 -132 7 143 -73 10 -29 90 -90 10 -1220 136 -73 -290 -51 7 101 -109 -51 186 -232 -132 36 -29 62 -90 -309 199 -190 10 -1220 186 -1220 -1220 -1220 -29 142 -1220 -1220 243 -390 -390 81 -1220 105 56 -151 115 -232 -1220 -309 -110 149 -1220 -1220 246 -1220 -1220 -1220 240 -290 -232 -1220 236 -1220 -1220 -110 -1220 152 -1220 -151 211 -109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDRTGTGRTGTRTGGGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 47 E= 1.5e-071 0.234043 0.042553 0.212766 0.510638 0.127660 0.191489 0.489362 0.191489 0.340426 0.148936 0.340426 0.170213 0.340426 0.000000 0.468085 0.191489 0.042553 0.127660 0.191489 0.638298 0.148936 0.127660 0.659574 0.063830 0.127660 0.234043 0.148936 0.489362 0.170213 0.021277 0.723404 0.085106 0.340426 0.000000 0.659574 0.000000 0.000000 0.000000 0.148936 0.851064 0.000000 0.000000 0.978723 0.021277 0.021277 0.319149 0.000000 0.659574 0.468085 0.063830 0.404255 0.063830 0.000000 0.021277 0.085106 0.893617 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.957447 0.042553 0.063830 0.000000 0.936170 0.000000 0.000000 0.085106 0.000000 0.914894 0.000000 0.063830 0.787234 0.148936 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGDRTGTGRTGTRTGGGTG MEME-3 regular expression -------------------------------------------------------------------------------- [TAG]G[AG][GA]TG[TC]G[GA]TG[TC][AG]TGGGTG -------------------------------------------------------------------------------- Time 834.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3-1323 6.31e-01 100 chrI:81818-82353 1.42e-03 50_[-3(7.27e-07)]_31 chrI:138795-139378 8.75e-02 100 chrI:142092-143677 6.85e-01 100 chrI:166011-166820 9.49e-01 100 chrI:180964-181491 1.45e-01 100 chrI:182307-182772 1.88e-01 100 chrI:229118-230194 1.15e-03 39_[-2(6.22e-07)]_35 chrII:9333-9910 5.12e-07 11_[+2(3.30e-09)]_63 chrII:36147-36591 7.77e-01 100 chrII:36774-36951 7.50e-01 100 chrII:44946-45371 7.08e-02 62_[-3(5.50e-05)]_19 chrII:60627-61362 4.90e-01 100 chrII:88979-89980 7.41e-01 100 chrII:165050-165576 2.38e-01 100 chrII:167724-168727 1.37e-01 100 chrII:181292-181675 6.01e-04 62_[-3(4.59e-08)]_19 chrII:196922-197882 9.94e-01 100 chrII:226813-227744 6.55e-01 100 chrII:266136-266740 3.06e-06 25_[-1(2.86e-10)]_49 chrII:326520-327238 8.54e-07 10_[-2(4.43e-08)]_64 chrII:332300-333413 9.59e-02 100 chrII:347353-347937 5.12e-07 7_[+2(3.30e-09)]_67 chrII:350394-351163 6.72e-01 100 chrII:405091-405338 9.58e-01 100 chrII:405549-406322 1.46e-08 27_[-1(7.97e-11)]_21_[+2(3.44e-05)] chrII:414683-415947 7.65e-01 100 chrII:476853-477744 1.11e-01 100 chrII:592847-593501 9.89e-01 100 chrII:604071-605255 8.76e-01 100 chrII:605424-607092 1.30e-01 100 chrII:642893-643255 1.12e-03 28_[-2(1.90e-07)]_46 chrII:644968-645472 1.19e-06 31_[-1(1.54e-10)]_43 chrII:680894-682201 8.98e-01 100 chrIII:1-679 2.19e-05 22_[-3(1.41e-08)]_13_[-3(4.59e-08)]_\ 27 chrIII:11083-11574 6.46e-01 100 chrIII:13966-15892 6.18e-01 100 chrIII:58721-59006 5.75e-02 58_[-3(5.73e-05)]_23 chrIII:81986-82793 8.77e-01 100 chrIII:123418-123814 1.58e-12 21_[+1(1.81e-12)]_9_[-2(5.04e-07)]_\ 18 chrIII:127522-128290 4.56e-01 100 chrIII:142247-143048 2.75e-01 100 chrIII:161980-163892 7.22e-01 100 chrIII:168075-168625 3.65e-11 11_[+1(4.58e-11)]_9_[-2(1.37e-07)]_\ 28 chrIII:177098-178864 9.11e-01 100 chrIII:227725-228219 1.97e-06 19_[+2(2.07e-10)]_55 chrIII:262682-262985 3.21e-01 100 chrIII:291748-293064 7.44e-01 100 chrIII:294606-295951 8.51e-01 100 chrIII:315626-316619 3.05e-01 100 chrIV:28-347 4.89e-07 [-3(1.78e-10)]_81 chrIV:83278-83804 2.03e-05 56_[+2(1.69e-08)]_18 chrIV:98185-98410 8.61e-01 100 chrIV:117107-118203 4.52e-01 100 chrIV:125305-125655 1.89e-05 40_[+3(6.45e-09)]_41 chrIV:129417-130996 4.62e-01 100 chrIV:217101-218033 3.33e-01 100 chrIV:221160-222374 7.64e-01 100 chrIV:229395-230680 3.53e-01 100 chrIV:307983-309029 7.71e-02 29_[+2(4.46e-05)]_45 chrIV:321679-322019 5.70e-01 100 chrIV:322178-323563 6.89e-01 100 chrIV:341195-341642 3.95e-02 67_[+3(6.50e-05)]_14 chrIV:358089-358465 8.97e-03 14_[+3(1.47e-06)]_67 chrIV:359315-359885 3.95e-04 26_[+2(9.02e-08)]_48 chrIV:410198-410731 5.42e-07 [-1(2.24e-10)]_74 chrIV:411219-411689 5.41e-06 31_[-3(2.92e-08)]_50 chrIV:434024-434579 1.32e-12 23_[+1(2.86e-10)]_10_[-2(7.36e-10)]_\ 15 chrIV:434906-435088 9.97e-01 100 chrIV:437505-438296 8.53e-01 100 chrIV:465169-465610 3.50e-01 100 chrIV:488460-489140 2.90e-06 57_[+1(4.08e-10)]_17 chrIV:490457-492697 5.97e-01 100 chrIV:519512-521281 5.99e-01 100 chrIV:525072-525366 8.02e-06 26_[+3(4.27e-09)]_55 chrIV:538971-539201 9.45e-07 69_[-3(3.69e-09)]_12 chrIV:568470-569245 3.42e-03 74_[+2(8.18e-07)] chrIV:579024-580850 6.63e-01 100 chrIV:619629-620268 5.95e-01 100 chrIV:644968-645390 3.65e-11 34_[+1(4.58e-11)]_9_[-2(1.37e-07)]_\ 5 chrIV:667766-668258 3.70e-09 55_[+1(5.68e-13)]_19 chrIV:802534-803015 3.65e-11 17_[+1(4.58e-11)]_9_[-2(1.37e-07)]_\ 22 chrIV:835779-836370 6.49e-01 100 chrIV:884163-884658 1.64e-06 [+2(1.41e-09)]_74 chrIV:946143-946625 3.47e-05 29_[-1(2.02e-08)]_45 chrIV:980808-981299 8.59e-07 26_[-2(2.99e-11)]_48 chrIV:992574-993227 2.73e-07 15_[-1(6.95e-11)]_59 chrIV:1013650-1013958 3.30e-01 100 chrIV:1016917-1017696 7.73e-01 100 chrIV:1062793-1063125 5.87e-05 40_[+3(2.30e-08)]_41 chrIV:1075159-1075767 1.19e-06 69_[+1(1.98e-10)]_5 chrIV:1094940-1095776 3.03e-06 72_[+1(7.59e-09)]_2 chrIV:1116803-1117092 5.92e-01 100 chrIV:1150486-1151769 5.90e-01 100 chrIV:1175562-1176260 3.21e-05 3_[-1(5.83e-09)]_71 chrIV:1201476-1202119 5.62e-13 2_[+2(1.60e-09)]_10_[-1(6.95e-11)]_\ 36 chrIV:1256867-1257335 9.31e-04 2_[-2(6.67e-07)]_72 chrIV:1278711-1278947 4.87e-01 100 chrIV:1300200-1301639 5.14e-01 100 chrIV:1305028-1305180 7.76e-01 100 chrIV:1305351-1305923 5.17e-07 42_[+2(2.99e-11)]_32 chrIV:1352331-1352772 6.73e-06 11_[-2(1.60e-09)]_63 chrIV:1355680-1356041 3.11e-02 21_[+3(2.93e-05)]_5_[+3(1.16e-05)]_\ 36 chrIV:1359197-1361119 6.62e-01 100 chrIV:1400861-1401049 5.74e-01 100 chrIV:1401211-1401921 5.48e-01 100 chrIV:1450566-1451313 9.05e-01 100 chrIV:1461481-1462172 2.48e-06 27_[-2(2.60e-09)]_47 chrIV:1488995-1489948 9.84e-01 100 chrIV:1524076-1525655 1.02e-03 42_[-2(6.22e-07)]_32 chrIX:1-208 9.25e-03 10_[-3(6.89e-06)]_71 chrIX:66837-69863 4.70e-02 50_[-3(5.73e-05)]_31 chrIX:98936-100072 7.51e-01 100 chrIX:115941-116973 9.07e-01 100 chrIX:131538-132738 1.70e-01 100 chrIX:174765-175332 1.32e-12 32_[+2(7.36e-10)]_10_[-1(2.86e-10)]_\ 6 chrIX:183056-183714 1.63e-01 100 chrIX:197025-198094 8.17e-01 100 chrIX:210488-210954 1.01e-09 30_[-1(5.68e-13)]_44 chrIX:232709-233029 9.70e-01 100 chrIX:248601-249364 3.57e-01 100 chrIX:254235-254546 3.96e-03 10_[+3(5.39e-06)]_71 chrIX:255377-256284 3.12e-01 100 chrIX:256520-257895 6.78e-01 100 chrIX:299958-300696 5.19e-01 100 chrIX:316102-317463 1.83e-01 100 chrIX:323994-324606 1.56e-04 63_[+1(1.49e-07)]_11 chrIX:325511-326133 3.40e-06 11_[-1(2.86e-10)]_63 chrIX:336118-337009 9.04e-01 100 chrIX:370144-370777 5.37e-07 41_[-1(1.54e-10)]_33 chrIX:438532-439887 4.12e-01 100 chrM:58235-58726 1.00e+00 100 chrM:61097-61406 6.29e-01 100 chrV:6145-6644 3.31e-05 5_[-3(2.37e-09)]_76 chrV:53503-54721 5.36e-01 100 chrV:60973-62214 5.03e-01 100 chrV:85120-86959 3.54e-01 100 chrV:99895-100359 9.14e-04 55_[+2(7.14e-07)]_19 chrV:110024-110945 1.77e-02 100 chrV:117512-118372 3.52e-01 100 chrV:130797-131464 3.08e-11 12_[+1(9.11e-11)]_9_[-2(3.25e-07)]_\ 27 chrV:135187-135735 5.62e-13 24_[+1(6.95e-11)]_10_[-2(1.60e-09)]_\ 14 chrV:138134-140892 1.45e-01 100 chrV:176232-177393 3.56e-01 100 chrV:207088-207681 4.28e-05 57_[-1(4.50e-08)]_17 chrV:225414-225736 4.80e-01 100 chrV:250116-250910 9.63e-01 100 chrV:269716-270723 8.21e-01 100 chrV:287467-287963 7.95e-01 100 chrV:288159-288771 1.71e-01 100 chrV:305220-306922 2.47e-01 100 chrV:311760-312435 3.16e-09 22_[-2(6.75e-12)]_52 chrV:321923-323295 9.99e-01 100 chrV:354687-355676 1.53e-01 100 chrV:361972-362517 1.99e-01 100 chrV:396143-398038 8.63e-01 100 chrV:406470-409213 6.84e-02 100 chrV:423112-424369 4.93e-01 100 chrV:430984-431595 5.86e-03 6_[+1(4.07e-05)]_68 chrV:434378-436067 8.04e-01 100 chrV:438085-438985 6.58e-01 100 chrV:441737-442660 4.45e-01 100 chrV:443009-443524 3.21e-09 33_[-2(3.67e-13)]_41 chrV:469255-469712 1.86e-13 23_[+2(1.31e-10)]_11_[-1(2.24e-10)]_\ 14 chrV:486864-487609 2.62e-01 100 chrV:492034-492577 9.04e-01 100 chrV:522656-523029 3.90e-01 100 chrV:550929-551737 1.61e-18 12_[+1(5.68e-13)]_11_[-2(3.67e-13)]_\ 25 chrVI:4480-5545 5.54e-01 100 chrVI:64072-65426 9.26e-01 100 chrVI:95434-95859 4.20e-07 32_[+3(2.04e-09)]_49 chrVI:101095-101621 2.49e-05 67_[+2(1.52e-08)]_7 chrVI:136944-137943 1.80e-01 100 chrVI:157515-158554 9.91e-01 100 chrVI:161960-162472 3.56e-05 61_[+2(1.69e-08)]_13 chrVI:166851-167073 3.97e-01 100 chrVI:167256-167664 9.31e-04 26_[+2(7.64e-07)]_48 chrVI:180599-181736 7.73e-01 100 chrVI:190973-191862 1.51e-01 42_[+2(8.97e-05)]_32 chrVI:204728-205628 5.85e-01 100 chrVI:210444-210899 3.36e-08 8_[+1(2.02e-08)]_26_[-2(7.64e-07)]_\ 14 chrVI:221450-222097 7.15e-01 100 chrVI:223763-224172 7.07e-01 100 chrVI:226550-226956 3.80e-06 31_[-2(1.60e-09)]_43 chrVI:269219-270160 9.14e-01 100 chrVII:9-190 6.43e-02 100 chrVII:514-1598 6.09e-01 100 chrVII:9951-10504 6.72e-01 100 chrVII:67223-67653 8.37e-01 100 chrVII:73632-74117 1.42e-13 15_[+1(2.24e-10)]_11_[-2(1.31e-10)]_\ 22 chrVII:84076-84630 1.55e-01 100 chrVII:110401-110955 1.23e-05 7_[+1(4.50e-08)]_67 chrVII:114938-115767 6.58e-01 100 chrVII:121896-122634 6.63e-06 53_[+2(1.60e-09)]_21 chrVII:147897-149557 7.79e-01 100 chrVII:185283-186166 2.06e-07 50_[+1(6.95e-11)]_24 chrVII:204897-206239 1.34e-05 2_[+2(2.60e-09)]_72 chrVII:228474-228812 3.79e-01 100 chrVII:254054-254720 1.43e-01 100 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chrXV:281658-282469 6.08e-01 100 chrXV:287958-288420 1.49e-03 52_[+2(7.64e-07)]_22 chrXV:300590-301438 7.54e-01 100 chrXV:340054-340632 5.74e-09 16_[+1(3.69e-09)]_10_[-2(2.40e-07)]_\ 22 chrXV:353864-354308 1.32e-12 15_[+1(2.86e-10)]_10_[-2(7.36e-10)]_\ 23 chrXV:424405-424749 6.14e-01 100 chrXV:431782-432220 7.46e-01 100 chrXV:438402-439085 1.39e-07 8_[-1(8.05e-10)]_23_[-2(8.97e-05)]_\ 17 chrXV:444577-444726 3.98e-01 100 chrXV:444892-446122 2.77e-01 100 chrXV:446686-447334 3.90e-03 4_[+2(9.73e-06)]_70 chrXV:464218-464710 2.04e-05 35_[+2(1.52e-08)]_39 chrXV:487225-487709 7.39e-11 21_[+2(4.66e-09)]_11_[-1(4.87e-09)]_\ 16 chrXV:505083-505501 1.77e-02 52_[-3(4.46e-06)]_6_[-3(3.53e-05)]_\ 4 chrXV:571673-572290 3.11e-06 26_[+2(3.44e-05)]_9_[-1(1.49e-07)]_\ 13 chrXV:593994-594860 1.43e-04 22_[-2(1.37e-07)]_52 chrXV:639192-639678 8.71e-01 100 chrXV:663523-664135 1.57e-07 43_[+1(2.24e-10)]_31 chrXV:677936-679306 9.98e-01 100 chrXV:709964-710579 1.65e-04 14_[-1(5.16e-08)]_60 chrXV:779711-780814 5.19e-01 100 chrXV:832248-832844 9.99e-01 100 chrXV:853995-854447 4.78e-16 26_[+1(1.62e-11)]_10_[-2(6.75e-12)]_\ 12 chrXV:866564-867097 5.20e-01 100 chrXV:900089-901861 1.00e+00 100 chrXV:925198-925401 4.29e-01 100 chrXV:968097-968428 1.58e-06 25_[+3(8.63e-05)]_5_[+3(5.64e-09)]_\ 32 chrXV:976135-976707 3.95e-04 49_[+2(1.49e-07)]_25 chrXV:978774-979156 1.56e-02 100 chrXV:980450-981386 9.16e-01 100 chrXV:1003922-1005224 9.98e-01 100 chrXV:1025670-1026123 1.93e-03 30_[-3(1.26e-06)]_51 chrXV:1028543-1029646 9.64e-01 100 chrXVI:55806-56556 5.64e-05 48_[+1(5.33e-09)]_26 chrXVI:76150-76735 8.70e-02 100 chrXVI:90298-90768 9.99e-01 100 chrXVI:121405-121790 1.14e-03 14_[-3(2.13e-07)]_67 chrXVI:135489-135872 8.07e-01 100 chrXVI:172798-174122 9.72e-01 100 chrXVI:188523-189106 5.45e-03 26_[-3(4.18e-06)]_55 chrXVI:194116-194603 9.62e-01 100 chrXVI:208894-211094 6.98e-01 100 chrXVI:279754-280217 7.47e-01 100 chrXVI:280666-282967 2.56e-02 100 chrXVI:302559-304427 1.95e-02 100 chrXVI:338649-339198 8.58e-04 20_[-2(7.14e-07)]_54 chrXVI:377902-379039 9.95e-01 100 chrXVI:404568-405720 1.70e-01 100 chrXVI:406165-407776 9.36e-01 100 chrXVI:435592-436466 8.13e-02 67_[+2(7.07e-05)]_7 chrXVI:515105-517187 2.11e-01 100 chrXVI:520124-520545 3.00e-02 100 chrXVI:559988-560515 8.34e-10 7_[+1(7.59e-09)]_29_[-2(3.34e-08)]_\ 12 chrXVI:571976-572600 3.23e-12 30_[+2(1.69e-08)]_8_[-1(6.95e-11)]_\ 10 chrXVI:581842-582441 4.93e-07 6_[-1(6.95e-11)]_68 chrXVI:622241-622850 1.49e-06 55_[+1(7.59e-09)]_19 chrXVI:627376-627655 9.60e-06 70_[+3(1.76e-07)]_11 chrXVI:689094-689837 5.54e-01 100 chrXVI:699891-700694 2.60e-03 18_[-3(4.39e-07)]_63 chrXVI:718499-719302 4.49e-01 100 chrXVI:731716-732332 6.60e-01 100 chrXVI:743783-744898 1.28e-05 28_[-1(1.48e-08)]_46 chrXVI:768935-770468 9.93e-01 100 chrXVI:775640-776100 8.78e-01 100 chrXVI:794379-796099 8.18e-01 100 chrXVI:810445-810861 1.73e-05 72_[+2(4.66e-09)]_2 chrXVI:819164-819982 1.61e-18 5_[+2(3.67e-13)]_11_[-1(5.68e-13)]_\ 32 chrXVI:856513-857278 3.48e-09 56_[+2(6.75e-12)]_18 chrXVI:860107-860650 1.67e-05 50_[+2(1.69e-08)]_24 chrXVI:880158-880600 5.60e-09 14_[-2(3.67e-13)]_60 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************