Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.016544
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.057451
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.073398
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.013198
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.064124
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background
Finished invoke:
  name: bg  status: 0  time: 0.013355
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 967.444276
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 63.90161
Invoking:
  centrimo -seqlen 523 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.181936
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.491759
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary HCDMBSGGRDTCGAACCSVKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.652102
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary SSCTYWAMCMACTRRRCYAHV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.644168
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary AYCTYCDSATTASHAGTSMGACGCBTTDCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.439982
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.296041
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary ARAAAWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.561125
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary CDCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.486161
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary GMTACCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.250155
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.245743
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary CAWAACCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.246808
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.25482
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary TGTTGKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.322249
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary ATCKTGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.274911
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary GMTTAACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.286087
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background -primary AACAARGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.242095
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif HCDMBSGGRDTCGAACCSVKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.3214
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif SSCTYWAMCMACTRRRCYAHV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.321039
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif AYCTYCDSATTASHAGTSMGACGCBTTDCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.328386
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.213697
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif ARAAAWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.19265
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif CDCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.210803
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif GMTACCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.215841
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.21421
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif CAWAACCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.214779
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.211395
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif TGTTGKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.208796
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif ATCKTGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.215751
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif GMTTAACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.214661
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/background --motif AACAARGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/BY4742--NRG1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.215493
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NRG1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.157139
Done